RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5541
(301 letters)
>gnl|CDD|217730 pfam03792, PBC, PBC domain. The PBC domain is a member of the TALE
(three-amino-acid loop extension) superclass of
homeodomain proteins.
Length = 192
Score = 174 bits (442), Expect = 5e-54
Identities = 74/88 (84%), Positives = 78/88 (88%)
Query: 20 IEHSDYRAKLAQIRTIYQQELEKYEQACSEFTTHVMNLLREQSRTRPITPKEIERMVQII 79
IEHSDYRAKL+QIR IY ELEKYEQAC EFT HVMNLLREQSRTRPI+ +EIERMV II
Sbjct: 105 IEHSDYRAKLSQIRQIYHSELEKYEQACKEFTQHVMNLLREQSRTRPISQREIERMVNII 164
Query: 80 HRKFSSIQMQLKQSTCEAVMILRSRFLD 107
RKF+ IQ QLKQSTCEAVMILRSRFLD
Sbjct: 165 SRKFNKIQFQLKQSTCEAVMILRSRFLD 192
Score = 48.3 bits (115), Expect = 8e-07
Identities = 22/28 (78%), Positives = 24/28 (85%)
Query: 274 GPRKQDISDILQQILNITDQSLDEAQAR 301
R QDISD+LQQI+ ITDQSLDEAQAR
Sbjct: 3 AQRSQDISDLLQQIMKITDQSLDEAQAR 30
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 73.0 bits (180), Expect = 6e-17
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
RRKR F+ + E L + F NPYPS E +EELA++ +T QV WF N+R + K+
Sbjct: 1 RRKRTRFTPEQLEELEKEF---EKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
Query: 169 N 169
+
Sbjct: 58 S 58
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 67.9 bits (167), Expect = 3e-15
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 127 FYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIR 165
HL NPYPSEE K ELAR+ ++ Q+ NWF N R R
Sbjct: 2 LLEHLHNPYPSEEEKSELARQTGLSRKQIDNWFINARRR 40
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 67.9 bits (167), Expect = 5e-15
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
RRKR F+ + E L + F N YPS E +EELA+K +T QV WF N+R ++K+
Sbjct: 1 RRKRTTFTPEQLEELEKEF---EKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 67.3 bits (165), Expect = 9e-15
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
RRKR +F+ + E L + F NPYPS E +EELA+K ++ QV WF N+R ++K
Sbjct: 2 RRKRTSFTPEQLEELEKEF---QKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 48.6 bits (116), Expect = 4e-07
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 107 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRY 166
+ KRR + + +L F NPYPS + +L+ N+ V WF NKR +
Sbjct: 50 PPKSKRRRTTDEQLMVLEREF---EINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKE 106
Query: 167 KK 168
KK
Sbjct: 107 KK 108
>gnl|CDD|220700 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 438
Score = 32.7 bits (75), Expect = 0.21
Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 25/148 (16%)
Query: 1 MESVTSLIYFFTLR-ILLHAIEHSDYRAKLAQIRTIYQQELEKYEQACSEFTTHVMNLLR 59
+ V L YF+ L L A YR E+ YE T LLR
Sbjct: 298 ISPVVGLSYFYDLFERLRRAAIDKKYR------------EVGAYE------TPERPRLLR 339
Query: 60 EQSRTRPITPKEIERMVQIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQA 119
+ +P+T +++ +++ +H F+ + ++ + + +L+A + R +S
Sbjct: 340 ARI-QKPLTVVDLDEVMKALHEPFAPL-LE----AADEGLEHIVEWLEAANRFRWYSTWL 393
Query: 120 SEILNEYFYSHLSNPYPSEEAKEELARK 147
++ +E E L +
Sbjct: 394 PGNHKKHVEKQKEAAAELKETAEALEKA 421
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 31.7 bits (72), Expect = 0.41
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 45 QACSEFTTHVMNLLREQSRTRPITPKEIERMVQIIHRKFS-SIQMQLKQSTCEAVMILRS 103
Q EF +++ L E+ + + + +IH F ++ + C +
Sbjct: 23 QDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTE 82
Query: 104 RFLD 107
L
Sbjct: 83 PELF 86
>gnl|CDD|214822 smart00798, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase (AICARFT), this enzyme catalyses the
formylation of AICAR with 10-formyl-tetrahydrofolate to
yield FAICAR and tetrahydrofolate. The last step is
catalysed by IMP (Inosine monophosphate) cyclohydrolase
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 311
Score = 29.4 bits (67), Expect = 2.0
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 113 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R ++ +E +N+ F + P EEA E L++K N+ L + + +K
Sbjct: 176 RPVDEETAEAINKIFLEVIIAPDFDEEALEILSKKKNLRLLECGPLPDPDGLEFKS 231
>gnl|CDD|238045 cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators.
Length = 58
Score = 27.1 bits (61), Expect = 2.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 142 EELARKCNITLSQVSNWFGNKR 163
EELA K ++ S +S KR
Sbjct: 16 EELAEKLGVSRSTISRIENGKR 37
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 29.2 bits (65), Expect = 3.1
Identities = 15/89 (16%), Positives = 30/89 (33%)
Query: 151 TLSQVSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMGASTPMMSPAPDSVGYS 210
T+ + S + K+ + + +G + N A+ S S A+T + P +
Sbjct: 97 TVDEYSETYKEKKFQVLETLGTYNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVL 156
Query: 211 KEANLYAAKKAAGASPYSMGASTPMMSPA 239
K A G + A+ +
Sbjct: 157 KANAASAPNTTTGVGSAATTAAISATTAT 185
>gnl|CDD|197775 smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.
Length = 56
Score = 26.3 bits (59), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 142 EELARKCNITLSQVSNWFGNKRI 164
EELA K ++ S +S KR
Sbjct: 14 EELAEKLGVSRSTLSRIENGKRK 36
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 28.8 bits (64), Expect = 4.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 143 ELARKCNITLSQVSNWFGNKRIRYKKNI---GKAQEEANLYAAKKAAGASPYSMGASTPM 199
+LA+ + LS V RIR K+++ KA EEA AA AA A+P + A+
Sbjct: 274 KLAKDKGVDLSTVKGTGVGGRIR-KQDVLAAAKAAEEARAAAAAPAAAAAPAAPAAAAK- 331
Query: 200 MSPAPD 205
PD
Sbjct: 332 -PAEPD 336
>gnl|CDD|180161 PRK05609, nusG, transcription antitermination protein NusG;
Validated.
Length = 181
Score = 27.8 bits (63), Expect = 4.5
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 51 TTHVMNLL-REQSRTRPITPKEIERMVQIIHRKFSSIQMQLKQSTCEAVMIL 101
T V + S+ P++ KE+E++++ + + ++ E V ++
Sbjct: 85 TPGVTGFVGSTGSKPTPLSEKEVEKILKQLQEGVEKPKPKVDFEVGEMVRVI 136
>gnl|CDD|218411 pfam05067, Mn_catalase, Manganese containing catalase. Catalases
are important antioxidant metalloenzymes that catalyze
disproportionation of hydrogen peroxide, forming
dioxygen and water. Two families of catalases are known,
one having a heme cofactor, and this family that is a
structurally distinct family containing non-heme
manganese.
Length = 283
Score = 28.4 bits (63), Expect = 4.6
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 104 RFLDAR-RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNK 162
FL AR +N +A EIL E + P+P + K+E+ARK S+ G++
Sbjct: 173 SFLLARETVHQNQFYKALEILEEVETIVVPVPFPRKLEKQEVARKL-FNFSR-----GDE 226
Query: 163 RIRYKKNIGKAQEEANLYAAKKAAGASPYSMGASTPMMSPAP 204
+ G+A + + K GA GA P + PAP
Sbjct: 227 STIGRWAKGEAPDGGGAFEYVKEPGA-----GAPIPDLRPAP 263
>gnl|CDD|148727 pfam07286, DUF1445, Protein of unknown function (DUF1445). This
family represents a conserved region approximately 150
residues long within a number of hypothetical bacterial
and eukaryotic proteins of unknown function.
Length = 143
Score = 27.5 bits (62), Expect = 4.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 65 RPITPKEIERMVQIIHR 81
RPI ++ R VQI R
Sbjct: 55 RPIPADDVIRAVQITSR 71
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 28.7 bits (64), Expect = 4.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 181 AAKKAAGASPYSMGASTPMMSPAPDSVGYSKEANLYAAKKAAGASPYSMGASTPMMSPAP 240
AA AA A+ ++ A+ SPAP+++ +++A A G A P +PA
Sbjct: 407 AAAPAAAAAARAVAAAPARRSPAPEALAAARQA------SARGPGGAPAPAPAPAAAPAA 460
>gnl|CDD|216464 pfam01375, Enterotoxin_a, Heat-labile enterotoxin alpha chain.
Length = 258
Score = 28.3 bits (63), Expect = 5.2
Identities = 29/144 (20%), Positives = 43/144 (29%), Gaps = 31/144 (21%)
Query: 134 PYPSEEAKEELARKCNITLSQVSNW----FGNKRIRYKKNIGKAQEEANLYAAKKAAGAS 189
PYPSE E+A I SQ+ W FG +N ++ LY A A
Sbjct: 121 PYPSEN---EVAALGGIPYSQIYGWYRVSFGAIDPGLHRNRDYRRD---LYRNLTIAPAE 174
Query: 190 PYSMGASTPMMSPA---------------------PDSVGYSKEANLYAAKKAAGASPYS 228
A P PA + +A L A S
Sbjct: 175 DGYQLAGFPPDFPAWREEPWRHFAPFGCGPNNRYRSNGTCALVQARLSQHDLADFQSRVK 234
Query: 229 MGASTPMMSPAPDSVGYSSMEDRM 252
+ + D +G + ++D +
Sbjct: 235 RQLNLLFSTYQSDFIGPNGIKDEL 258
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.6 bits (64), Expect = 5.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 191 YSMGASTPMMSPAPDSVGYSKEANLYAAKKAAGAS 225
++M S M+ PDSV YSK L+ A A ++
Sbjct: 110 HAMVQSYEMIFAQPDSVTYSKTGMLFGANLVAKST 144
>gnl|CDD|233251 TIGR01054, rgy, reverse gyrase. This model describes reverse gyrase,
found in both archaeal and bacterial thermophiles. This
enzyme, a fusion of a type I topoisomerase domain and a
helicase domain, introduces positive supercoiling to
increase the melting temperature of DNA double strands.
Generally, these gyrases are encoded as a single
polypeptide. An exception was found in Methanopyrus
kandleri, where enzyme is split within the topoisomerase
domain, yielding a heterodimer of gene products
designated RgyB and RgyA [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1171
Score = 28.6 bits (64), Expect = 5.6
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 64 TRPITPKEIERMVQ------------------IIHRKFSSIQMQ-----LKQSTCEAVMI 100
TRP+ +++R++ +I R+F + QM+ K+ T +A
Sbjct: 966 TRPLDVDDLQRLILEGVIELEGLTREHLRLYDLIFRRFMASQMRPAKVDTKEITLKADGK 1025
Query: 101 LRSRFLDARRKRRNFSK 117
R F
Sbjct: 1026 EAEEEGIVEIVERGFEL 1042
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 28.3 bits (63), Expect = 6.2
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 144 LARKCNITLSQVSNWFGNKRIRYKKNIGKAQEEANLYA--AKKAAGASPYSMGASTPMMS 201
LAR+ + LS V RI +E+ + A A+ S P
Sbjct: 254 LAREFGVDLSAVKGTGIKGRI--------LREDVQRFVKEPSVRAQAAAASAAGGAPGAL 305
Query: 202 PAPDSVGYSK-----EANLYAAKKAAGASPYSMGASTPMMS 237
P P+ V +SK E ++ +K +GA+ P ++
Sbjct: 306 PWPN-VDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVT 345
>gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed.
Length = 378
Score = 27.8 bits (63), Expect = 7.0
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 22 HSDYRAKLAQIRTIYQQ---ELEKYEQACSEFTTHVMNLLREQS--RTRPITPKEIERMV 76
HS A ++ ++ EL + E+ C ++ ++E S + R +T +E++ +V
Sbjct: 319 HSGRHA----LKNKLKEYGIELSR-EELCE-----LLEKVKELSERKKRSLTDEELKELV 368
Query: 77 QIIHRK 82
+ + R
Sbjct: 369 EDVRRS 374
>gnl|CDD|226203 COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic
inhibitor/zinc-resistance associated protein
[Intracellular trafficking and secretion / Cell motility
and secretio / Signal transduction mechanisms /
Inorganic ion transport and metabolism].
Length = 160
Score = 27.4 bits (61), Expect = 7.5
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 214 NLYAAKKAAGASPYSMGASTPMMSPAPDSVGYSSMEDRMHNTNMLPNYIEGANDINTDPQ 273
N+ A GA+ ++ AS + A + M D H P + G D
Sbjct: 1 NMRKVTAAVGAAALALTASALAHAAATAAAPPLPMADAHHGGQFGPRHQGGMFKG-LDLT 59
Query: 274 GPRKQDISDILQQ 286
++Q I D++Q
Sbjct: 60 RAQRQQIRDLMQA 72
>gnl|CDD|219478 pfam07586, HXXSHH, Protein of unknown function (DUF1552). A family
of proteins identified in Rhodopirellula baltica.
Length = 298
Score = 27.6 bits (62), Expect = 7.8
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 61 QSRTRPITPKEIERMVQIIHRKFSSI---------QMQLKQSTCEAVMILRSRFLDARRK 111
+PI Q+ R F S +++ ++S IL + DA+
Sbjct: 120 NGPGQPIPA--ENDPRQLFDRLFGSGSASLEQRKARLRRRRS------ILDAVLEDAKSL 171
Query: 112 RRNFSKQASEILNEYFYS 129
RR K+ L+EY S
Sbjct: 172 RRKLGKEDRAKLDEYLTS 189
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 27.8 bits (62), Expect = 8.8
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 25/150 (16%)
Query: 23 SDYRAKLAQIRTIYQQELEKYE----QACSEFTTHVMNLLREQSRTRPITPKEIERMVQI 78
++R K++ ++ I Q + Y+ Q SEF +NL+ E+S P E+ R++Q+
Sbjct: 63 DNWRLKVSNLKKILQGIYDYYQDVLGQQLSEFLLPDLNLIAEKS-----DPAELGRLLQL 117
Query: 79 I-------HRKFSSIQ--MQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEY--- 126
I K IQ M L++S VM + + S + E
Sbjct: 118 ILGCAVNCEEKQEYIQQIMTLEESVQHVVM----TAIQELMSKEQGSSPSRESAGNLDQQ 173
Query: 127 FYSHLSNPYPSEEAKEELARKCNITLSQVS 156
L + ++E K+ELA++C+ QV
Sbjct: 174 LKKALEDLKEAQEEKDELAQRCHELDKQVL 203
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 27.8 bits (62), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 51 TTHVMNLLREQSRTRPITPKEIERMVQIIHRKFSSI 86
T + +LRE R PI ++I + Q I K+ +
Sbjct: 198 TNFIQQMLRE--RGEPIPAEDILLLAQRIKEKYCYV 231
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 27.7 bits (62), Expect = 9.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 211 KEANLYAAKKAAGASPYSMGASTPMMSPAPDSVGYSSMEDRMHNT 255
K+ +L A AA A S STP M+ S Y+ E R HN+
Sbjct: 488 KQKHLETASAAAPALKKS--VSTPFMNTNTGSKQYTMSEVRKHNS 530
>gnl|CDD|222950 PHA02952, PHA02952, EEV maturation protein; Provisional.
Length = 648
Score = 27.7 bits (62), Expect = 9.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 148 CNITLSQ-VSNWFGNKRIRYKKNIGKAQEEANLYAAKKAAGASPYSMGAST 197
C ++LS +W G K R K I KA+ + + A +KAA S Y + +
Sbjct: 325 CGLSLSDYCKHWGGKKVSRPKDLITKAEAKRKIKALEKAASESAYYLYDAV 375
>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase.
Length = 303
Score = 27.4 bits (60), Expect = 9.8
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 14 RILLHAIEHSDYRAKLAQIRTIYQQELEKYEQACSEFTTHVMNLLREQSRTRPITPKEI 72
R LLH Y ++ I+ + E Y A + + + R +TP EI
Sbjct: 220 RPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEI 278
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.127 0.354
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,086,259
Number of extensions: 1409874
Number of successful extensions: 1873
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1855
Number of HSP's successfully gapped: 64
Length of query: 301
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 205
Effective length of database: 6,679,618
Effective search space: 1369321690
Effective search space used: 1369321690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)