RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5541
(301 letters)
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 87.7 bits (217), Expect = 8e-23
Identities = 66/73 (90%), Positives = 71/73 (97%)
Query: 108 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
ARRKRRNF+KQA+EILNEYFYSHLSNPYPSEEAKEELA+KC IT+SQVSNWFGNKRIRYK
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60
Query: 168 KNIGKAQEEANLY 180
KNIGK QEEAN+Y
Sbjct: 61 KNIGKFQEEANIY 73
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 81.3 bits (201), Expect = 1e-20
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 108 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
+ KR K A+ ++ + + H+ +PYP+E+ K+++A + N+TL QV+NWF N R R
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 61
Query: 168 K 168
+
Sbjct: 62 Q 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 72.1 bits (177), Expect = 3e-17
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 111 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
+ F+K+ IL +F ++ NPY + E L + +++ Q+ NW N+R + K
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 58.6 bits (142), Expect = 3e-12
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 116 SKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKKN 169
+ Q + IL + F + +P E+ E L+++ + + + WF +R + K +
Sbjct: 1 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 58.3 bits (141), Expect = 4e-12
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
+R R +F+++ E L + F YP A+E LA K ++ +++ WF N+R ++++
Sbjct: 2 QRNRTSFTQEQIEALEKEF---ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 58
Query: 169 NIGKAQEE 176
+
Sbjct: 59 EEKLRNQR 66
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 58.3 bits (141), Expect = 4e-12
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
+ + FS + L + F + Y S ++ LA+ ++ QV WF N+R ++++
Sbjct: 1 KGGQVRFSNDQTIELEKKF---ETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 58.5 bits (141), Expect = 5e-12
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 108 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
++ EIL F + N +P +A + +T Q WF + ++
Sbjct: 1 GSEGAATMTEDQVEILEYNF--NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 58
Query: 168 KNIGKAQEEANL 179
++ G E ++
Sbjct: 59 RSEGLPSECRSV 70
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 57.5 bits (139), Expect = 7e-12
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 110 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
+ + ++ L + F S YP E+ + L+++ + ++ ++ WF ++R + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 57.4 bits (138), Expect = 1e-11
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R R S +A IL + + YP +EA L+ + ++ + +F N+R K
Sbjct: 8 PRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
Query: 169 N 169
+
Sbjct: 66 S 66
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 57.1 bits (138), Expect = 1e-11
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R+KR ++K + L + F L N Y + + + E+AR N+T QV WF N+R++ KK
Sbjct: 14 RKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 56.4 bits (136), Expect = 2e-11
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 112 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
+ + S QA L + F + + KEE+A+KC IT QV WF NKR+R K
Sbjct: 1 KSSISPQARAFLEQVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 56.4 bits (136), Expect = 2e-11
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R+KR +SK L + ++ + +++ + +++ +++ Q++ WF N+R++ KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAAN---KFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 56.2 bits (135), Expect = 5e-11
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 88 MQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARK 147
M++K++ + + R NF+ + L N Y S + E+A
Sbjct: 7 MKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELE---KEFHFNKYLSRARRVEIAAT 63
Query: 148 CNITLSQVSNWFGNKRIRYKK 168
+ +QV WF N+R++ KK
Sbjct: 64 LELNETQVKIWFQNRRMKQKK 84
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 55.4 bits (133), Expect = 7e-11
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 109 RRKRRNFSKQASEILNEYFY-SHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
+R R F+ + E + + + A E+ + + + W N +
Sbjct: 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77
Query: 168 K 168
Sbjct: 78 S 78
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 54.8 bits (132), Expect = 8e-11
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R R +++ L + +NP P KE+L ++ + WF NKR + KK
Sbjct: 4 TRVRTVLNEKQLHTLRTCY---AANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 53.8 bits (129), Expect = 2e-10
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
RR R FS + L F YP +EELA++ N+T +++ WF N+R R +K
Sbjct: 3 RRSRTTFSASQLDELERAF---ERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 59
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 52.6 bits (126), Expect = 4e-10
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
RR+R +F+ Q + L F N YP +EE+A N+T ++V WF N+R +++K
Sbjct: 2 RRQRTHFTSQQLQQLEATF---QRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 53.1 bits (127), Expect = 4e-10
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 20/84 (23%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCN---------------ITLS 153
R R + K+ ++ YF N YP E +EE+A CN +T
Sbjct: 1 RGSRFTWRKECLAVMESYF---NENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSL 57
Query: 154 QVSNWFGNKRIRYKK--NIGKAQE 175
+V NWF N+R K+ NI E
Sbjct: 58 KVYNWFANRRKEIKRRANIAAILE 81
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 52.1 bits (125), Expect = 5e-10
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 112 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R+ +++ + L + F N Y + + E+A ++T Q+ WF N+R+++KK
Sbjct: 1 RQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 52.2 bits (125), Expect = 6e-10
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
RR R F+ L ++F L Y + +L+ K + +QV WF N+R R+K
Sbjct: 2 RRTRTTFTSSQIAELEQHF---LQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 58
Query: 169 NIGKAQEEA 177
+ ++++
Sbjct: 59 QSDQHKDQS 67
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 51.1 bits (122), Expect = 2e-09
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 110 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
++R S A + L +F H PS + +A + N+ V WF N+R R K+
Sbjct: 1 KRRTTISIAAKDALERHFGEH---SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 50.7 bits (121), Expect = 2e-09
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R+ R F+ L F Y S + E + ++T +QV WF N+R + K+
Sbjct: 1 RKPRTPFTTAQLLALERKF---RQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 50.3 bits (120), Expect = 2e-09
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 110 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R R F++ L + F Y S + ELA + N+ S + WF N+R++ K+
Sbjct: 1 RYRTAFTRDQLGRLEKEF---YKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 50.7 bits (121), Expect = 3e-09
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R++R FS+ L F Y S +E LA ++T +QV WF N R + K+
Sbjct: 3 RKRRVLFSQAQVYELERRF---KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59
Query: 169 N 169
Sbjct: 60 Q 60
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 49.1 bits (117), Expect = 6e-09
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 110 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIR 165
R R FS + L F N Y +E +++L+ + + +Q+ WF N R +
Sbjct: 1 RPRTAFSSEQLARLKREF---NENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 49.2 bits (117), Expect = 9e-09
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
+RKR + + L F P PS + +A + + V WF N+R + K+
Sbjct: 9 KRKRTSIENRVRWSLETMFLKC---PKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 47.9 bits (114), Expect = 2e-08
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 112 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKR 163
R F+ L+ F N PS+E + ++++ + LS VSN+F N R
Sbjct: 2 RLVFTDVQRRTLHAIF---KENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 46.6 bits (110), Expect = 9e-08
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 109 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
R++R F+K + L F Y S +E LA +T +QV WF N R + K+
Sbjct: 10 RKRRVLFTKAQTYELERRF---RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 45.7 bits (108), Expect = 1e-07
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 111 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYKK 168
KR + L + F + P+ E +A + N+ + WF N+R + K+
Sbjct: 1 KRTSIETNIRVALEKSFMEN---QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 45.9 bits (108), Expect = 2e-07
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 24/78 (30%)
Query: 112 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCN---------------------I 150
R + + +IL + + PS+E +E L +CN +
Sbjct: 1 RFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLV 57
Query: 151 TLSQVSNWFGNKRIRYKK 168
T +V NWF N+R
Sbjct: 58 TEVRVYNWFANRRKEEAF 75
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.3 bits (104), Expect = 6e-07
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 108 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
+K + + + +L F L++ ++E L + +T ++ WF K+
Sbjct: 4 TPQKFKEKTAEQLRVLQASF---LNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 60
Query: 168 KNIGKAQEE 176
K + +
Sbjct: 61 LKEEKMEID 69
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 40.9 bits (95), Expect = 1e-05
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 108 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNKRIRYK 167
+ + +K+ IL + L + E ++L + + ++ WFG+ R K
Sbjct: 3 SGSSGKRKTKEQLAILKSF---FLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59
Query: 168 KNIGKAQEE 176
K +
Sbjct: 60 HGQLKWFRD 68
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.4 bits (65), Expect = 0.65
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 13 LRILLHAIEHSDYRAKLAQIRTIYQQELEKYEQACSEFTTHVMNLLREQSRTRPITPKEI 72
+ +L +E +DY + + + EKY + + ++NL+R ++ +
Sbjct: 398 VAEMLSYLETADYSIREEIVLKVAIL-AEKYAVDYTWYVDTILNLIRIAGDY--VSEEVW 454
Query: 73 ERMVQIIHRKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQASEILNEY 126
R++QI+ +Q ++ EA L A N K IL E+
Sbjct: 455 YRVIQIV-INRDDVQGYAAKTVFEA--------LQAPACHENLVKVGGYILGEF 499
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 78
Score = 26.7 bits (59), Expect = 0.90
Identities = 7/56 (12%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 107 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITLSQVSNWFGNK 162
DA ++R + + + + L+ E +A + + ++ + F ++
Sbjct: 4 DALKRREHIITTTCNLYRTHHHDSLTM--------ENIAEQAGVGVATLYRNFPDR 51
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 27.7 bits (61), Expect = 1.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 23 SDYRAKLAQIRTIYQQELEKYEQACSEFTTH 53
+DY KL Y+ E + A +E H
Sbjct: 5 ADYPVKLKA----YEDEQASIKAALAELEKH 31
>d1m1ha2 d.58.42.1 (A:5-50,A:132-186) N-utilization substance G
protein NusG, N-terminal domain {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 26.4 bits (58), Expect = 2.0
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 49 EFTTHVMNLLREQSRTRPITPKEIERMVQII 79
E T HV + + P+ +E++ ++ I
Sbjct: 69 EKTPHVFRPVMVGGKPVPLKEEEVQNILNQI 99
>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 119
Score = 26.5 bits (58), Expect = 2.2
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 51 TTHVMNLLREQSRTRPITPKEIERMVQII 79
T + + R P++P E+ ++++
Sbjct: 87 TPGITGFVGAGMRPVPLSPDEVRHILEVS 115
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 26.0 bits (57), Expect = 2.2
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 93 STCEAVMILRSRFLDARRKRR-NFSKQASEILNEYFYSHLSNPYPSEEAKEEL 144
C + M F++ R+ R NF + A+++ + N S + E+
Sbjct: 17 RRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQ-SDPNDPKSRYDRNEI 68
>d2oqea2 d.17.2.1 (A:18-115) Copper amine oxidase, domains 1 and 2
{Yeast (Hansenula polymorpha) [TaxId: 4905]}
Length = 98
Score = 24.9 bits (54), Expect = 5.4
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 66 PITPKEIERMVQIIHRKFSSIQMQLKQST 94
P++ EI+ + F+ ++ T
Sbjct: 10 PLSTAEIKAATNTVKSYFAGKKISFNTVT 38
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 256
Score = 25.9 bits (57), Expect = 5.4
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 65 RPITPKEIERMVQIIHR 81
RPI + I R
Sbjct: 166 RPIPADRVAEASAISGR 182
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 24.0 bits (52), Expect = 5.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 142 EELARKCNITLSQVSNWFGNKRI 164
EE + + +I L + +W +
Sbjct: 16 EEFSARYHIPLGTLRDWEQGRSE 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.127 0.354
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,719
Number of extensions: 47957
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 47
Length of query: 301
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,240,546
Effective search space: 267957936
Effective search space used: 267957936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)