Query psy5542
Match_columns 86
No_of_seqs 119 out of 1026
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:13:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lss_A Seryl-tRNA synthetase; 99.9 2E-26 6.7E-31 174.4 8.1 86 1-86 277-367 (484)
2 3err_A Fusion protein of micro 99.9 3.8E-26 1.3E-30 174.5 7.6 86 1-86 342-432 (536)
3 3vbb_A Seryl-tRNA synthetase, 99.9 8.4E-26 2.9E-30 172.2 7.8 86 1-86 279-369 (522)
4 1wle_A Seryl-tRNA synthetase; 99.9 5.4E-26 1.9E-30 172.6 6.4 86 1-86 290-379 (501)
5 3qne_A Seryl-tRNA synthetase, 99.9 2.4E-25 8.1E-30 168.6 6.3 85 1-86 254-344 (485)
6 3ial_A Prolyl-tRNA synthetase; 99.9 4.1E-25 1.4E-29 168.3 6.2 85 1-85 130-215 (518)
7 1ses_A Seryl-tRNA synthetase; 99.9 5.5E-25 1.9E-29 164.0 5.8 85 1-85 233-322 (421)
8 2dq0_A Seryl-tRNA synthetase; 99.9 1E-23 3.5E-28 158.5 7.5 85 1-86 260-348 (455)
9 4hvc_A Bifunctional glutamate/ 99.9 1.2E-23 4.2E-28 160.2 7.3 85 1-85 136-221 (519)
10 2i4l_A Proline-tRNA ligase; al 99.9 1.7E-23 5.9E-28 156.4 7.3 85 2-86 138-222 (458)
11 2j3l_A Prolyl-tRNA synthetase; 99.9 1.5E-23 5.2E-28 159.5 6.4 85 1-85 117-201 (572)
12 2dq3_A Seryl-tRNA synthetase; 99.9 4.6E-23 1.6E-27 153.7 7.9 85 1-86 239-327 (425)
13 1nj1_A PROR, proline-tRNA synt 99.9 3.5E-22 1.2E-26 151.2 7.4 85 1-85 145-230 (501)
14 1hc7_A Prolyl-tRNA synthetase; 99.9 4.8E-22 1.6E-26 149.7 7.0 81 1-82 119-200 (477)
15 1evl_A Threonyl-tRNA synthetas 99.9 8.2E-22 2.8E-26 144.7 7.1 81 1-82 99-181 (401)
16 1ati_A Glycyl-tRNA synthetase; 99.8 2.7E-22 9.2E-27 152.0 3.7 80 2-82 197-277 (505)
17 1nj8_A Proline-tRNA synthetase 99.8 1.8E-21 6.2E-26 145.9 7.6 82 1-82 113-195 (459)
18 1qf6_A THRRS, threonyl-tRNA sy 99.8 1.4E-21 4.7E-26 151.4 6.6 81 1-82 340-422 (642)
19 3uh0_A Threonyl-tRNA synthetas 99.8 1.7E-21 5.7E-26 146.4 6.3 74 1-75 137-212 (460)
20 1nyr_A Threonyl-tRNA synthetas 99.8 2.2E-20 7.6E-25 144.3 7.1 80 1-81 342-423 (645)
21 1g5h_A Mitochondrial DNA polym 99.8 1.4E-20 4.9E-25 141.2 3.5 74 1-75 150-227 (454)
22 2cja_A Seryl-tRNA synthetase; 99.8 1E-19 3.5E-24 138.8 7.1 75 1-76 332-408 (522)
23 3a32_A Probable threonyl-tRNA 99.8 2.7E-19 9.3E-24 134.1 4.5 81 2-83 119-209 (471)
24 3ikl_A DNA polymerase subunit 99.7 2.5E-18 8.4E-23 129.6 8.2 81 2-83 161-248 (459)
25 2zt5_A Glycyl-tRNA synthetase; 99.7 3.3E-19 1.1E-23 139.4 2.9 73 3-75 255-369 (693)
26 3mf2_A BLL0957 protein; aminoa 99.7 4.4E-17 1.5E-21 119.2 7.6 75 2-81 158-233 (346)
27 1h4v_B Histidyl-tRNA synthetas 99.7 1.3E-16 4.4E-21 117.1 6.3 75 4-84 92-167 (421)
28 1qe0_A Histidyl-tRNA synthetas 99.6 1.4E-16 4.8E-21 116.8 6.2 77 2-84 89-167 (420)
29 1wu7_A Histidyl-tRNA synthetas 99.6 4.6E-16 1.6E-20 115.0 6.3 71 7-84 94-166 (434)
30 1htt_A Histidyl-tRNA synthetas 99.6 1.1E-15 3.8E-20 112.3 7.9 72 7-84 95-168 (423)
31 4e51_A Histidine--tRNA ligase; 99.5 2.7E-14 9.2E-19 107.1 6.6 76 2-84 120-196 (467)
32 1z7m_A ATP phosphoribosyltrans 99.5 8.3E-14 2.9E-18 101.1 6.0 70 8-83 112-182 (344)
33 3od1_A ATP phosphoribosyltrans 99.3 2.9E-12 9.9E-17 94.7 7.0 69 8-82 98-167 (400)
34 3rac_A Histidine-tRNA ligase; 99.3 4.5E-12 1.5E-16 93.0 6.9 71 9-84 113-190 (373)
35 3lc0_A Histidyl-tRNA synthetas 99.3 7.7E-12 2.6E-16 93.8 7.0 68 8-81 118-188 (456)
36 4g84_A Histidine--tRNA ligase, 99.2 2.4E-11 8.3E-16 89.8 6.0 71 6-80 97-168 (464)
37 3net_A Histidyl-tRNA synthetas 99.2 2.6E-11 8.8E-16 90.8 5.6 66 8-79 115-183 (465)
38 1usy_A ATP phosphoribosyltrans 99.1 7.7E-11 2.6E-15 83.1 6.5 67 8-83 64-132 (275)
39 3dsq_A Pyrrolysyl-tRNA synthet 99.1 1.8E-10 6E-15 82.1 7.2 69 6-81 143-212 (288)
40 4g85_A Histidine-tRNA ligase, 99.1 1.1E-10 3.7E-15 88.0 6.0 69 6-80 150-221 (517)
41 3qtc_A Pyrrolysyl-tRNA synthet 98.6 7.7E-08 2.6E-12 68.0 6.8 65 7-79 149-213 (290)
42 3a5y_A GENX, putative lysyl-tR 97.9 2.5E-05 8.4E-10 56.9 5.7 46 15-63 111-156 (345)
43 1nnh_A Asparaginyl-tRNA synthe 97.8 3E-05 1E-09 55.0 5.1 44 13-59 88-134 (294)
44 3a74_A Lysyl-tRNA synthetase; 97.7 6.9E-05 2.4E-09 56.8 5.9 44 14-60 243-286 (493)
45 1e1o_A Lysyl-tRNA synthetase, 97.6 8.4E-05 2.9E-09 56.5 5.8 43 15-60 253-295 (504)
46 1x54_A Asparaginyl-tRNA synthe 97.6 0.00011 3.8E-09 54.8 5.7 46 13-61 200-246 (434)
47 1wyd_A Hypothetical aspartyl-t 97.5 0.00015 5.3E-09 54.0 5.7 45 13-60 199-244 (429)
48 1eov_A ASPRS, aspartyl-tRNA sy 97.5 0.00015 5.1E-09 54.8 5.4 46 13-61 244-291 (487)
49 4ah6_A Aspartate--tRNA ligase, 97.4 0.00019 6.4E-09 55.9 5.6 38 15-55 218-255 (617)
50 1l0w_A Aspartyl-tRNA synthetas 97.4 0.00029 9.8E-09 54.4 6.0 44 15-61 214-257 (580)
51 1c0a_A Aspartyl tRNA synthetas 97.4 0.00029 9.9E-09 54.3 6.0 45 15-62 208-252 (585)
52 3bju_A Lysyl-tRNA synthetase; 97.3 0.00042 1.4E-08 52.8 6.0 44 15-61 246-289 (521)
53 1n9w_A Aspartyl-tRNA synthetas 97.3 0.00025 8.7E-09 52.7 4.6 42 13-57 190-233 (422)
54 4ex5_A Lysine--tRNA ligase; st 97.2 0.00052 1.8E-08 52.5 6.0 45 15-62 274-318 (529)
55 2xgt_A Asparaginyl-tRNA synthe 97.2 0.00075 2.6E-08 50.3 5.8 45 15-62 199-244 (435)
56 3i7f_A Aspartyl-tRNA synthetas 96.9 0.0015 5.1E-08 50.3 5.3 45 15-61 312-357 (548)
57 3nem_A Aspartyl-tRNA synthetas 96.9 0.0025 8.4E-08 47.6 6.3 45 15-62 205-251 (438)
58 3m4p_A Ehasnrs, asparaginyl-tR 96.7 0.0037 1.3E-07 46.9 6.0 45 15-61 223-267 (456)
59 3l4g_A Phenylalanyl-tRNA synth 96.4 0.0042 1.5E-07 47.4 5.1 58 10-75 344-401 (508)
60 2du3_A O-phosphoseryl-tRNA syn 96.1 0.019 6.7E-07 44.0 7.2 65 8-80 200-266 (534)
61 1b7y_A Phers, protein (phenyla 95.9 0.015 5.2E-07 42.3 5.7 57 10-74 190-247 (350)
62 2rhq_A Phenylalanyl-tRNA synth 95.7 0.022 7.7E-07 40.1 5.7 58 10-75 129-187 (294)
63 3pco_A Phenylalanyl-tRNA synth 94.3 0.15 5E-06 36.8 6.7 56 8-72 179-234 (327)
64 2odr_B Phosphoseryl-tRNA synth 92.6 0.27 9.3E-06 38.6 6.1 64 8-79 219-284 (648)
65 2odr_A Phosphoseryl-tRNA synth 92.5 0.28 9.5E-06 38.6 6.1 64 8-79 219-284 (665)
66 2odr_D Phosphoseryl-tRNA synth 92.5 0.28 9.7E-06 38.7 6.1 64 8-79 219-284 (685)
67 2du7_A O-phosphoseryl-tRNA syn 92.5 0.26 8.8E-06 38.0 5.7 60 8-75 212-272 (549)
68 2odr_C Phosphoseryl-tRNA synth 92.4 0.29 1E-05 38.7 6.1 64 8-79 219-284 (701)
69 3l4g_B Phenylalanyl-tRNA synth 88.8 1 3.4E-05 34.6 6.1 58 10-75 468-525 (589)
70 3ig2_A Phenylalanyl-tRNA synth 78.8 7.6 0.00026 25.6 6.3 64 10-75 80-154 (213)
71 3ica_A Phenylalanyl-tRNA synth 78.2 5.9 0.0002 26.1 5.7 62 12-75 82-154 (213)
72 2rhq_B Phenylalanyl-tRNA synth 76.9 2.3 7.8E-05 33.8 3.8 64 10-77 568-637 (795)
73 3cmq_A Phenylalanyl-tRNA synth 75.6 18 0.00062 26.5 8.1 60 12-75 132-222 (415)
74 3k1t_A Glutamate--cysteine lig 72.4 6.4 0.00022 29.4 5.0 49 37-85 235-288 (432)
75 2xi5_A RNA polymerase L, L-pro 69.8 21 0.00073 23.7 6.7 48 33-80 82-129 (184)
76 1b7y_B Phers, protein (phenyla 62.3 15 0.00051 29.2 5.5 55 11-78 565-626 (785)
77 2jvf_A De novo protein M7; tet 33.2 70 0.0024 18.3 4.6 26 58-83 62-87 (96)
78 2lqo_A Putative glutaredoxin R 31.1 49 0.0017 18.7 3.0 21 63-83 18-38 (92)
79 2jz5_A Uncharacterized protein 30.9 83 0.0028 18.4 4.1 39 42-82 15-53 (91)
80 2qhs_A Lipoyltransferase; glob 29.3 1.3E+02 0.0043 20.0 5.7 54 21-77 89-142 (237)
81 1aba_A Glutaredoxin; electron 29.3 64 0.0022 17.3 3.2 21 62-82 17-37 (87)
82 1txn_A Coproporphyrinogen III 28.5 33 0.0011 24.8 2.3 48 21-76 199-251 (328)
83 2khd_A Uncharacterized protein 26.2 1.1E+02 0.0038 18.4 4.6 40 41-82 31-70 (108)
84 3qmx_A Glutaredoxin A, glutare 26.2 65 0.0022 18.1 3.0 22 62-83 29-50 (99)
85 1vju_A Coproporphyrinogen III 25.8 32 0.0011 24.7 1.8 50 21-76 182-234 (309)
86 3q8k_A Flap endonuclease 1; he 24.0 1E+02 0.0035 21.8 4.2 22 59-80 134-155 (341)
87 1wik_A Thioredoxin-like protei 23.1 1E+02 0.0036 17.3 3.5 21 63-83 34-54 (109)
88 1t1v_A SH3BGRL3, SH3 domain-bi 21.9 94 0.0032 16.9 3.1 21 63-83 22-42 (93)
89 2d9w_A Docking protein 2; PH d 21.6 95 0.0033 19.3 3.2 26 39-64 94-119 (127)
90 2k3i_A Uncharacterized protein 21.5 1.5E+02 0.005 18.0 4.6 43 42-84 30-75 (109)
91 2aex_A Coproporphyrinogen III 20.7 38 0.0013 24.7 1.3 48 21-76 217-269 (346)
92 2ct6_A SH3 domain-binding glut 20.6 1.3E+02 0.0045 17.1 3.9 23 61-83 26-48 (111)
93 1nbw_B Glycerol dehydratase re 20.1 1.6E+02 0.0054 17.9 4.3 39 41-83 5-43 (117)
No 1
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.93 E-value=2e-26 Score=174.41 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=80.0
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCC----CCceeeceeeeeeeeEEcCChH-hHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPK----FGLMRSREFLMKDLYAFTASEV-DANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~----~Gl~R~reF~~~d~~~f~~~~~-~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
||+++++||++||++++++++|||+|+++. .||+|+|||+|+|+|+||++++ ++.++++++++++++||+.||||
T Consensus 277 l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp 356 (484)
T 3lss_A 277 YHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP 356 (484)
T ss_dssp HTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 578999999999999999999999999653 5999999999999999999865 47889999999999999999999
Q ss_pred EEEEEecCCCC
Q psy5542 76 YRKVIVRHGAV 86 (86)
Q Consensus 76 ~~~~~~~~g~~ 86 (86)
|+++.+|+|+|
T Consensus 357 yrvv~l~tgdl 367 (484)
T 3lss_A 357 YRVVNICSGAL 367 (484)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEEcCCccc
Confidence 99999999986
No 2
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.93 E-value=3.8e-26 Score=174.49 Aligned_cols=86 Identities=24% Similarity=0.390 Sum_probs=80.4
Q ss_pred CcccccCCcCCcchhhheeeceeecCCC----CCCCceeeceeeeeeeeEEcCCh-HhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELR----PKFGLMRSREFLMKDLYAFTASE-VDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~----~~~Gl~R~reF~~~d~~~f~~~~-~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
|++++++||++||++++|+++|||+|++ ++.||+|+|||+|+|+|+||+++ +++.++++++++.++++|++||||
T Consensus 342 l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLp 421 (536)
T 3err_A 342 LHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 421 (536)
T ss_dssp HTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999994 35699999999999999999987 577889999999999999999999
Q ss_pred EEEEEecCCCC
Q psy5542 76 YRKVIVRHGAV 86 (86)
Q Consensus 76 ~~~~~~~~g~~ 86 (86)
|+++.+++|+|
T Consensus 422 yrvv~~~tgdl 432 (536)
T 3err_A 422 YRLVEVATGDM 432 (536)
T ss_dssp EEEEECCTTTS
T ss_pred EEEEEcCCccc
Confidence 99999999986
No 3
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.92 E-value=8.4e-26 Score=172.16 Aligned_cols=86 Identities=19% Similarity=0.398 Sum_probs=80.1
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCC----CCCceeeceeeeeeeeEEcCChH-hHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRP----KFGLMRSREFLMKDLYAFTASEV-DANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~----~~Gl~R~reF~~~d~~~f~~~~~-~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
||+++++||++||++++++++|||+|+++ +.||+|+|||+|+|+|+||++++ ++.++++++++.++++|+.||||
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLp 358 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIP 358 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 68999999999999999999999999964 46999999999999999999874 57889999999999999999999
Q ss_pred EEEEEecCCCC
Q psy5542 76 YRKVIVRHGAV 86 (86)
Q Consensus 76 ~~~~~~~~g~~ 86 (86)
|+++.+|+|+|
T Consensus 359 yrvv~l~tgdl 369 (522)
T 3vbb_A 359 YHIVNIVSGSL 369 (522)
T ss_dssp EEEEECCGGGC
T ss_pred eEEEEcCCccC
Confidence 99999999986
No 4
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.92 E-value=5.4e-26 Score=172.58 Aligned_cols=86 Identities=15% Similarity=0.331 Sum_probs=80.3
Q ss_pred CcccccCCcCCcchhhheeeceeecCCC---CCCCceeeceeeeeeeeEEcCCh-HhHHHHHHHHHHHHHHHHHHcCCcE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELR---PKFGLMRSREFLMKDLYAFTASE-VDANDVYNLVGKCYDDVFNTLGIKY 76 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~---~~~Gl~R~reF~~~d~~~f~~~~-~~~~~~~~~~~~~~~~i~~~lgi~~ 76 (86)
||+++++||++||++++|+++|||+|++ ++.||+|+|||+|+|+|+||+++ +++.+++++++++++++|+.|||||
T Consensus 290 l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpy 369 (501)
T 1wle_A 290 YFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHF 369 (501)
T ss_dssp HHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 4789999999999999999999999987 35699999999999999999987 7888899999999999999999999
Q ss_pred EEEEecCCCC
Q psy5542 77 RKVIVRHGAV 86 (86)
Q Consensus 77 ~~~~~~~g~~ 86 (86)
+++.+++|+|
T Consensus 370 rvv~l~tgdl 379 (501)
T 1wle_A 370 RVLDMPTQEL 379 (501)
T ss_dssp EEEECCGGGS
T ss_pred EEEEccCccc
Confidence 9999999975
No 5
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.91 E-value=2.4e-25 Score=168.55 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=77.6
Q ss_pred CcccccCC--cCCcchhhheeeceeecCCCC----CCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC
Q psy5542 1 MVADMKLS--HKALPLLLYQFTSKFRDELRP----KFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI 74 (86)
Q Consensus 1 ~~~~~i~S--yr~LP~~l~q~~~~fR~E~~~----~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi 74 (86)
|++++++| |++||++++|+++|||+|+++ +.||+|+|||+|+|+|+||++ +++++++++++++++++|+.|||
T Consensus 254 l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~p-e~s~~e~e~ml~~~e~il~~LgL 332 (485)
T 3qne_A 254 YHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEP-EKSWEEFDRMIGCSEEFYQSLGL 332 (485)
T ss_dssp HTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCH-HHHHHHHHHHHHHHHHHHHHCCC
Confidence 46788887 999999999999999999976 459999999999999999997 46788999999999999999999
Q ss_pred cEEEEEecCCCC
Q psy5542 75 KYRKVIVRHGAV 86 (86)
Q Consensus 75 ~~~~~~~~~g~~ 86 (86)
||+++.+|+|+|
T Consensus 333 pyrvv~~~tgdl 344 (485)
T 3qne_A 333 PYRVVGIVSGEL 344 (485)
T ss_dssp CEEEEECCGGGC
T ss_pred cEEEEEcCCccc
Confidence 999999999986
No 6
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.91 E-value=4.1e-25 Score=168.31 Aligned_cols=85 Identities=27% Similarity=0.232 Sum_probs=79.3
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHH-HHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVF-NTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~-~~lgi~~~~~ 79 (86)
+|+++++||++||+++||+++|||+|.+|+.||+|+|||+|+|+|+||.+++++++++..++++|.++| +.|||||+.+
T Consensus 130 ~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~ 209 (518)
T 3ial_A 130 MFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKL 209 (518)
T ss_dssp HHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEE
T ss_pred HHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 478899999999999999999999999999999999999999999998888999999999999999999 8999999998
Q ss_pred EecCCC
Q psy5542 80 IVRHGA 85 (86)
Q Consensus 80 ~~~~g~ 85 (86)
..+.++
T Consensus 210 ~~~~~e 215 (518)
T 3ial_A 210 RRVCWD 215 (518)
T ss_dssp EECGGG
T ss_pred ecChhh
Confidence 876543
No 7
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.91 E-value=5.5e-25 Score=163.98 Aligned_cols=85 Identities=25% Similarity=0.391 Sum_probs=79.2
Q ss_pred CcccccCCcCCcchhhheeeceeecCC----CCCCCceeeceeeeeeeeEEcCC-hHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDEL----RPKFGLMRSREFLMKDLYAFTAS-EVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~----~~~~Gl~R~reF~~~d~~~f~~~-~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
++++++.||++||++++|+++|||+|+ +++.||+|+|||+|+|+|+||.+ .+++++++.++++++.++|+.||||
T Consensus 233 ~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~ 312 (421)
T 1ses_A 233 LHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 312 (421)
T ss_dssp TTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 578999999999999999999999999 66779999999999999999998 4677889999999999999999999
Q ss_pred EEEEEecCCC
Q psy5542 76 YRKVIVRHGA 85 (86)
Q Consensus 76 ~~~~~~~~g~ 85 (86)
|+++.+++|+
T Consensus 313 ~rvv~l~t~d 322 (421)
T 1ses_A 313 YRLVEVATGD 322 (421)
T ss_dssp EEEEECCHHH
T ss_pred eEEEEecCcc
Confidence 9999998875
No 8
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.89 E-value=1e-23 Score=158.51 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=78.8
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCC----CCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPK----FGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKY 76 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~----~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~ 76 (86)
+|+++++||++||++++++++|||+|.++. .||+|+|||+|+|+|+||++ +++.++++++++.+.++|+.|||||
T Consensus 260 ~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~p-e~s~~~~~e~l~~~~~il~~LGL~y 338 (455)
T 2dq0_A 260 MHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRP-EESWEWHEKIIRNAEELFQELEIPY 338 (455)
T ss_dssp TTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECT-TTHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCH-HHHHHHHHHHHHHHHHHHHHcCCce
Confidence 578999999999999999999999998753 59999999999999999998 5677899999999999999999999
Q ss_pred EEEEecCCCC
Q psy5542 77 RKVIVRHGAV 86 (86)
Q Consensus 77 ~~~~~~~g~~ 86 (86)
+++..++|++
T Consensus 339 rv~~~~~gdl 348 (455)
T 2dq0_A 339 RVVNICTGDL 348 (455)
T ss_dssp EEEECCGGGS
T ss_pred EEEECCCccc
Confidence 9999998875
No 9
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=160.16 Aligned_cols=85 Identities=25% Similarity=0.268 Sum_probs=77.5
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHc-CCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTL-GIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~l-gi~~~~~ 79 (86)
+|+++++|||+||++++|+++|||+|.+|+.||+|+|||+|+|+|+|+.+++++++++..+++.|.++|+.| ||||+++
T Consensus 136 ~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~ 215 (519)
T 4hvc_A 136 AYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKG 215 (519)
T ss_dssp HHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEE
T ss_pred HHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceee
Confidence 478899999999999999999999999999999999999999999966667888999999999999999996 9999998
Q ss_pred EecCCC
Q psy5542 80 IVRHGA 85 (86)
Q Consensus 80 ~~~~g~ 85 (86)
..+.++
T Consensus 216 ~~t~~e 221 (519)
T 4hvc_A 216 RKTEKE 221 (519)
T ss_dssp ECCTTT
T ss_pred ecCCcc
Confidence 866543
No 10
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.89 E-value=1.7e-23 Score=156.41 Aligned_cols=85 Identities=42% Similarity=0.670 Sum_probs=79.9
Q ss_pred cccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy5542 2 VADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIV 81 (86)
Q Consensus 2 ~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~ 81 (86)
+++++.||++||+++||+++|||+|.+|+.||+|+|||+|.|+|+||.+.++++.++..+.+++.++|++|||+++.+.+
T Consensus 138 ~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~ 217 (458)
T 2i4l_A 138 FRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRA 217 (458)
T ss_dssp HHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEc
Confidence 56788899999999999999999999998899999999999999999888999999999999999999999999999998
Q ss_pred cCCCC
Q psy5542 82 RHGAV 86 (86)
Q Consensus 82 ~~g~~ 86 (86)
++|.|
T Consensus 218 ~~g~~ 222 (458)
T 2i4l_A 218 ETGPI 222 (458)
T ss_dssp CCCSS
T ss_pred ccccc
Confidence 88764
No 11
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.88 E-value=1.5e-23 Score=159.52 Aligned_cols=85 Identities=42% Similarity=0.712 Sum_probs=79.3
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
++++++.||++||+++||+++|||+|.+|+.||+|+|||+|.|+|+||.+++++++++..+++++.++|+.|||+|..+.
T Consensus 117 ~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~ 196 (572)
T 2j3l_A 117 LIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAII 196 (572)
T ss_dssp HHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 36778899999999999999999999888779999999999999999998899999999999999999999999999998
Q ss_pred ecCCC
Q psy5542 81 VRHGA 85 (86)
Q Consensus 81 ~~~g~ 85 (86)
+++|.
T Consensus 197 ~~~g~ 201 (572)
T 2j3l_A 197 GDGGA 201 (572)
T ss_dssp CCGGG
T ss_pred ccccc
Confidence 88764
No 12
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.88 E-value=4.6e-23 Score=153.69 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=78.5
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCC----CCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRP----KFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKY 76 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~----~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~ 76 (86)
+|++++.||++||++++++++|||+|.++ +.||+|+|||+|.|+|+||+++ ++++++.++++.+.++|+.|||||
T Consensus 239 ~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe-~s~~~~~e~i~~~~~il~~LGL~~ 317 (425)
T 2dq3_A 239 LYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPD-TSYDELEKLVKDAEEVLQLLGLPY 317 (425)
T ss_dssp GGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHH-HHHHHHHHHHHHHHHHHHHCCCce
Confidence 57889999999999999999999999854 5699999999999999999975 577789999999999999999999
Q ss_pred EEEEecCCCC
Q psy5542 77 RKVIVRHGAV 86 (86)
Q Consensus 77 ~~~~~~~g~~ 86 (86)
+++..++|++
T Consensus 318 rvv~l~~gdl 327 (425)
T 2dq3_A 318 RVVELCTGDL 327 (425)
T ss_dssp EEEECCTTTC
T ss_pred EEEEecCCcC
Confidence 9999999975
No 13
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.86 E-value=3.5e-22 Score=151.23 Aligned_cols=85 Identities=29% Similarity=0.386 Sum_probs=77.1
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceee-eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFL-MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~-~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
+|++++.||++||+++||+++|||+|.++..||+|+|||+ |+|+|+|+.+.+++++++.++++++.++|+.|||||++.
T Consensus 145 ~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~ 224 (501)
T 1nj1_A 145 MFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLIT 224 (501)
T ss_dssp HHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4678999999999999999999999987455999999999 999999888888999999999999999999999999988
Q ss_pred EecCCC
Q psy5542 80 IVRHGA 85 (86)
Q Consensus 80 ~~~~g~ 85 (86)
..+.++
T Consensus 225 ~~~~~e 230 (501)
T 1nj1_A 225 RRPPWD 230 (501)
T ss_dssp ECCTTT
T ss_pred eCCchh
Confidence 876554
No 14
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.86 E-value=4.8e-22 Score=149.75 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=73.8
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHH-HHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVF-NTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~-~~lgi~~~~~ 79 (86)
+|++++.||++||+++||+++|||+|.+|+ ||+|+|||+|+|+|+|+.+.+++++++..++++|.++| +.|||||+..
T Consensus 119 ~~~~~~~s~r~LP~rl~qig~vfR~E~~~r-Gl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~ 197 (477)
T 1hc7_A 119 MWSKWIRSWRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEG 197 (477)
T ss_dssp HHHHHCCBGGGCCEEEEEEEEEECCCSSCB-TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred HHHhhhhccccCCeeeEeecCEEeCCCCCC-CcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 367889999999999999999999998877 99999999999999988888899999999999999999 7999997766
Q ss_pred Eec
Q psy5542 80 IVR 82 (86)
Q Consensus 80 ~~~ 82 (86)
..+
T Consensus 198 ~~~ 200 (477)
T 1hc7_A 198 LKT 200 (477)
T ss_dssp ECC
T ss_pred eCC
Confidence 544
No 15
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.85 E-value=8.2e-22 Score=144.68 Aligned_cols=81 Identities=28% Similarity=0.328 Sum_probs=73.3
Q ss_pred CcccccCCcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC-cEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI-KYRK 78 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi-~~~~ 78 (86)
++++++.||++||+++||+++|||+|.+ |+.||+|+|||+|.|+|+||+ .+++++++.++++++.++|++||| ++.+
T Consensus 99 ~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~-~~~~~~e~~e~i~~~~~~~~~lgl~~~~~ 177 (401)
T 1evl_A 99 IFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT-EEQIRDEVNGCIRLVYDMYSTFGFEKIVV 177 (401)
T ss_dssp HHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHHTTTCSCCEE
T ss_pred HHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCC-HHHHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 3678899999999999999999999987 688999999999999999997 677888899999999999999999 7877
Q ss_pred EEec
Q psy5542 79 VIVR 82 (86)
Q Consensus 79 ~~~~ 82 (86)
...+
T Consensus 178 ~~~~ 181 (401)
T 1evl_A 178 KLST 181 (401)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6554
No 16
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.85 E-value=2.7e-22 Score=151.97 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=71.5
Q ss_pred cccccCCc-CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 2 VADMKLSH-KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 2 ~~~~i~Sy-r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
|++++.|| ++||+++||+++|||+|++|+.||+|+|||+|+|+|.||++ +++.+++.++++++.++|++|||++..+.
T Consensus 197 ~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~-e~~~~~~~~~i~~~~~i~~~LGl~~~~v~ 275 (505)
T 1ati_A 197 FKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRP-GEDEYWHRYWVEERLKWWQEMGLSRENLV 275 (505)
T ss_dssp HHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECH-HHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 46788999 99999999999999999999999999999999999988875 56677899999999999999999865555
Q ss_pred ec
Q psy5542 81 VR 82 (86)
Q Consensus 81 ~~ 82 (86)
.+
T Consensus 276 ~~ 277 (505)
T 1ati_A 276 PY 277 (505)
T ss_dssp EE
T ss_pred EC
Confidence 44
No 17
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.84 E-value=1.8e-21 Score=145.89 Aligned_cols=82 Identities=27% Similarity=0.378 Sum_probs=74.5
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceee-eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFL-MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~-~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
+|++++.||++||+++||+++|||+|.++..||+|+|||+ |+|+|+|+.+.+++++++.++++++.++|+.||||+...
T Consensus 113 ~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~ 192 (459)
T 1nj8_A 113 MMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLIS 192 (459)
T ss_dssp HHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEe
Confidence 3678999999999999999999999987355999999999 999999988889999999999999999999999998776
Q ss_pred Eec
Q psy5542 80 IVR 82 (86)
Q Consensus 80 ~~~ 82 (86)
..+
T Consensus 193 ~~~ 195 (459)
T 1nj8_A 193 KRP 195 (459)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
No 18
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.84 E-value=1.4e-21 Score=151.41 Aligned_cols=81 Identities=27% Similarity=0.314 Sum_probs=72.6
Q ss_pred CcccccCCcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC-cEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI-KYRK 78 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi-~~~~ 78 (86)
+|++++.|||+||+++||+++|||+|.+ ++.||+|+|||+|+|+|+||++ +++++++.++++++.++|++||| +|.+
T Consensus 340 ~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~~~i~~~~~i~~~lGl~~~~v 418 (642)
T 1qf6_A 340 IFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE-EQIRDEVNGCIRLVYDMYSTFGFEKIVV 418 (642)
T ss_dssp HHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHGGGTCCCCEE
T ss_pred HHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH-HHHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 4678899999999999999999999988 4669999999999999999985 67888899999999999999999 7777
Q ss_pred EEec
Q psy5542 79 VIVR 82 (86)
Q Consensus 79 ~~~~ 82 (86)
...+
T Consensus 419 ~l~~ 422 (642)
T 1qf6_A 419 KLST 422 (642)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5443
No 19
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=99.84 E-value=1.7e-21 Score=146.37 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=68.7
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCC-CCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHH-HHcCCc
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPK-FGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVF-NTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~-~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~-~~lgi~ 75 (86)
+|+++++||++||++++|+++|||+|.++. .||+|+|||+|+|+|+||++ +++++++.++++.+.++| +.|||+
T Consensus 137 ~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~-e~~~~e~~~~i~~~~~~~~~~lGl~ 212 (460)
T 3uh0_A 137 IFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTP-SQVKSEIFNSLKLIDIVYNKIFPFV 212 (460)
T ss_dssp HHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCH-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 478899999999999999999999998884 69999999999999999996 577888899999999999 899998
No 20
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.81 E-value=2.2e-20 Score=144.31 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=69.8
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCC-CCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC-cEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRP-KFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI-KYRK 78 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~-~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi-~~~~ 78 (86)
+|++.+.||++||+++||+++|||+|.++ ..||+|+|||+|.|+|+||+++ ++.+++.++++++.++|++||| +|..
T Consensus 342 ~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~-~~~d~~~e~i~~~~~~l~~lGl~~~~~ 420 (645)
T 1nyr_A 342 IYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPD-QIKEEFKRVVNMIIDVYKDFGFEDYSF 420 (645)
T ss_dssp HHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHH-HHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 36788899999999999999999999884 4699999999999999999864 4555789999999999999999 6766
Q ss_pred EEe
Q psy5542 79 VIV 81 (86)
Q Consensus 79 ~~~ 81 (86)
...
T Consensus 421 ~l~ 423 (645)
T 1nyr_A 421 RLS 423 (645)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 21
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.80 E-value=1.4e-20 Score=141.20 Aligned_cols=74 Identities=14% Similarity=0.039 Sum_probs=60.1
Q ss_pred CcccccCCcC-Ccchhhheeeceee---cCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 1 MVADMKLSHK-ALPLLLYQFTSKFR---DELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr-~LP~~l~q~~~~fR---~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
+|++++.||+ +||++++|+++||| ||.+|+.||+|+|||+|+|+|+||. ++++.+++..+++.+..++++|||+
T Consensus 150 ~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~-pe~~~e~~~~~~~~~~~~~~~lgi~ 227 (454)
T 1g5h_A 150 HYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTP-TRTSSQWLDFWLRHRLLWWRKFAMS 227 (454)
T ss_dssp THHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEEC-HHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeC-HhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 3677888888 99999999999999 6999988999999999999999997 5677889999999999999999997
No 22
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.79 E-value=1e-19 Score=138.77 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=66.2
Q ss_pred CcccccCCcCCcchhhhe-eeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHH-HHHHHHHHHcCCcE
Q psy5542 1 MVADMKLSHKALPLLLYQ-FTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVG-KCYDDVFNTLGIKY 76 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q-~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~-~~~~~i~~~lgi~~ 76 (86)
+|++++.||++||++++| +++|||+|+++..||+|+|||+|.|+|+||++ +++.+++++++ +....+++.||||.
T Consensus 332 ~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~F~~p-e~s~ee~ee~i~~~~~~~l~~LGLp~ 408 (522)
T 2cja_A 332 YVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTK-EEVLKCAEELHDRYMHIFNDILDIEW 408 (522)
T ss_dssp GTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEEH-HHHHHHHHHHHHHHHHHHHHTSCCCE
T ss_pred HHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEEEeCh-HHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 478899999999999999 99999999544479999999999999999975 56677889999 77777789999993
No 23
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.76 E-value=2.7e-19 Score=134.07 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=71.5
Q ss_pred cccccCCcC---CcchhhheeeceeecCCCCC-CCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHH-cCC--
Q psy5542 2 VADMKLSHK---ALPLLLYQFTSKFRDELRPK-FGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNT-LGI-- 74 (86)
Q Consensus 2 ~~~~i~Syr---~LP~~l~q~~~~fR~E~~~~-~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~-lgi-- 74 (86)
|++++.||| +||+++||+++|||+|.+++ .||+|+|||+|.|+|+||.++ .+.+++.++++++.++|++ |||
T Consensus 119 ~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~-~~~de~~e~i~~~~~~l~~~lGl~~ 197 (471)
T 3a32_A 119 FLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGG-RVIDVVYDVFEEMKLVLERLFKLGV 197 (471)
T ss_dssp HHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGG-GHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred HHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChH-HHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 567788998 99999999999999998877 699999999999999999865 4555789999999999999 999
Q ss_pred ---cEEEEEecC
Q psy5542 75 ---KYRKVIVRH 83 (86)
Q Consensus 75 ---~~~~~~~~~ 83 (86)
++..+..+.
T Consensus 198 ~~~~~~l~i~~~ 209 (471)
T 3a32_A 198 SSETFKVRLSMS 209 (471)
T ss_dssp STTTEEEEEECC
T ss_pred CCCCeEEEEecC
Confidence 587776655
No 24
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=129.56 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=66.9
Q ss_pred cccccCCcC-CcchhhheeeceeecCC---CCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc--
Q psy5542 2 VADMKLSHK-ALPLLLYQFTSKFRDEL---RPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-- 75 (86)
Q Consensus 2 ~~~~i~Syr-~LP~~l~q~~~~fR~E~---~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-- 75 (86)
|++...||+ +||++++|+++|||+|+ ++..||+|+|||+|+|+|.||.++ ++++++..+++....+++.|||+
T Consensus 161 fk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe-~~~e~~~~~~~~~~~~~~~LGi~~~ 239 (459)
T 3ikl_A 161 YVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPR-TSNQWLDFWLRHRLQWWRKFAMSPS 239 (459)
T ss_dssp TTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHHHCSSGG
T ss_pred HhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChh-HHHHHHHHHHHHHHHHHHHhCCChh
Confidence 678899999 99999999999999996 455699999999999999999965 55678999999999999999998
Q ss_pred -EEEEEecC
Q psy5542 76 -YRKVIVRH 83 (86)
Q Consensus 76 -~~~~~~~~ 83 (86)
++....+.
T Consensus 240 ~~r~~~~~~ 248 (459)
T 3ikl_A 240 NFSSSDCQD 248 (459)
T ss_dssp GEEEEEECC
T ss_pred hEEEeecCc
Confidence 87776643
No 25
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.74 E-value=3.3e-19 Score=139.39 Aligned_cols=73 Identities=26% Similarity=0.380 Sum_probs=63.7
Q ss_pred ccccCC-cCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhH---------------------------
Q psy5542 3 ADMKLS-HKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDA--------------------------- 54 (86)
Q Consensus 3 ~~~i~S-yr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~--------------------------- 54 (86)
++...| |++||+++||+|++||||.+|+.||+|+|||+|.|+|+||.+++..
T Consensus 255 ~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~ 334 (693)
T 2zt5_A 255 KRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSAR 334 (693)
T ss_dssp HHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCE
T ss_pred HHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhccccccc
Confidence 444455 8999999999999999999999999999999999999999876542
Q ss_pred --------------HHHHHHHHHHHHHHHHHcCCc
Q psy5542 55 --------------NDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 55 --------------~~~~~~~~~~~~~i~~~lgi~ 75 (86)
.+++..++..+..++..|||+
T Consensus 335 ~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~ 369 (693)
T 2zt5_A 335 KMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGIS 369 (693)
T ss_dssp EEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred cchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcC
Confidence 256778999999999999996
No 26
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.69 E-value=4.4e-17 Score=119.15 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=66.0
Q ss_pred cccc-cCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 2 VADM-KLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 2 ~~~~-i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
|+++ +++ +.|+++..+++|||+|++ .||+|+|||+|.|+|.||++ +++.++.+++++..+.+++.|||||+++.
T Consensus 158 ~~~eg~i~--~~plr~~~~g~CFR~EaS--~GL~RvhqF~kvE~v~~~tp-Eqs~~e~e~l~~~ae~il~~LgLpyrv~~ 232 (346)
T 3mf2_A 158 AASRGPLP--KGGLRFDVAADCFRREPS--KHLDRLQSFRMREYVCIGTP-DDVSDFRERWMVRAQAIARDLGLTFRVDY 232 (346)
T ss_dssp HHTTCSCC--TTCEEEEEEEEEECCCCC--SSTTSCSEEEEEEEEEEESH-HHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HccCCccc--ccCeEEEEECCccCCcCC--CCCeeeeeeEEEEEEEEeCH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5555 666 449999999999999983 69999999999999999985 55666889999999999999999999998
Q ss_pred e
Q psy5542 81 V 81 (86)
Q Consensus 81 ~ 81 (86)
+
T Consensus 233 ~ 233 (346)
T 3mf2_A 233 A 233 (346)
T ss_dssp C
T ss_pred c
Confidence 7
No 27
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.65 E-value=1.3e-16 Score=117.14 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=64.7
Q ss_pred cccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEEec
Q psy5542 4 DMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVIVR 82 (86)
Q Consensus 4 ~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~~~ 82 (86)
....||++||+++||++++||+| +|+.| |.|||+|.|+|+|+.+.+.++ .+++.++.++|++||++ +..+..+
T Consensus 92 ~~~~~~~~lP~rl~~~g~vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~ad---~e~i~~~~~~l~~lgl~~~~i~i~~ 165 (421)
T 1h4v_B 92 EHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILD---AEAVVLLYECLKELGLRRLKVKLSS 165 (421)
T ss_pred hccccccCCCeEEEEecCeecCC-CCCCC--CcccEEEccEEEECCCChhhh---HHHHHHHHHHHHHcCCCceEEEEcC
Confidence 34567899999999999999999 78788 999999999999999877776 57889999999999997 7766655
Q ss_pred CC
Q psy5542 83 HG 84 (86)
Q Consensus 83 ~g 84 (86)
.|
T Consensus 166 ~g 167 (421)
T 1h4v_B 166 VG 167 (421)
T ss_pred CC
Confidence 44
No 28
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.65 E-value=1.4e-16 Score=116.83 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=61.3
Q ss_pred cccccCCc-CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q psy5542 2 VADMKLSH-KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKV 79 (86)
Q Consensus 2 ~~~~i~Sy-r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~ 79 (86)
++++..|| ++||+++||+++|||+| +|+.| |+|||+|.|+|+|+.+.+.++ .+++.++.++|+.||++ +...
T Consensus 89 ~~~~~~~~~~~lP~r~~~~g~vfR~E-~~~~g--R~reF~q~~~e~~~~~~~~~d---~e~i~~~~~~l~~lgl~~~~i~ 162 (420)
T 1qe0_A 89 YIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVD---AEVLAMVMHIYQSFGLKHLKLV 162 (420)
T ss_dssp HHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHH---HHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHhccccccCCCCeEEEEecCEeecC-CCcCC--CcccEEEeeEEEECCCCchhH---HHHHHHHHHHHHHcCCCceEEE
Confidence 45677899 99999999999999999 66666 999999999999999877776 67889999999999998 7776
Q ss_pred EecCC
Q psy5542 80 IVRHG 84 (86)
Q Consensus 80 ~~~~g 84 (86)
..+.|
T Consensus 163 l~~~g 167 (420)
T 1qe0_A 163 INSVG 167 (420)
T ss_dssp EEECC
T ss_pred EcccC
Confidence 66544
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.62 E-value=4.6e-16 Score=114.95 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=62.6
Q ss_pred CCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc--EEEEEecCC
Q psy5542 7 LSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK--YRKVIVRHG 84 (86)
Q Consensus 7 ~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~--~~~~~~~~g 84 (86)
.++ +||+++||++++||+| +|+.| |.|||+|.|+|+|+.+...++ .+++.++.++|++||++ +..+.++.|
T Consensus 94 ~~~-~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~ad---~E~i~~~~~~l~~lgl~~~~~i~l~~~g 166 (434)
T 1wu7_A 94 KDL-QRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEAD---AEVIALASSILDRLGLQDIYEIRINSRK 166 (434)
T ss_dssp TTC-CSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHTTTTTSEEEEEEEHH
T ss_pred CCC-CCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChHhh---HHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 445 7999999999999999 88888 999999999999999877776 46889999999999997 888877654
No 30
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.62 E-value=1.1e-15 Score=112.26 Aligned_cols=72 Identities=22% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC--cEEEEEecCC
Q psy5542 7 LSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI--KYRKVIVRHG 84 (86)
Q Consensus 7 ~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi--~~~~~~~~~g 84 (86)
.+|++||+++||++++||+| +|+.| |.|||+|.|+|+|+.+...++ .+++.++.++|++||+ ++..+..+.|
T Consensus 95 ~~~~~~P~rl~~~g~vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~ad---~e~i~~~~~~l~~lgl~~~~~i~i~~~g 168 (423)
T 1htt_A 95 GLLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDID---AELIMLTARWWRALGISEHVTLELNSIG 168 (423)
T ss_dssp TCSTTCCEEEEEEEEEECCC-CCCSS--CCSEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHHTCGGGCEEEEEECC
T ss_pred ccccCCCeEEEEEcCEecCC-CCCCC--ccceeEEeeEEEECCCCchhh---HHHHHHHHHHHHHCCCCCCcEEEEcCCC
Confidence 45889999999999999999 88888 999999999999999877776 4678999999999999 4877776654
No 31
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.50 E-value=2.7e-14 Score=107.13 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=61.3
Q ss_pred cccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEE
Q psy5542 2 VADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVI 80 (86)
Q Consensus 2 ~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~ 80 (86)
+.....|| +||+|+|++++|||+| +|+.| |+|||+|.|+|+|+.+...++ .+++.++.++++.||++ +....
T Consensus 120 ~~~~~~~~-~lP~r~~~~g~vfR~E-~~~~g--R~ReF~Q~d~ei~g~~~~~ad---aEvi~l~~~~l~~lGl~~~~i~i 192 (467)
T 4e51_A 120 AIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDAD---AEIVMMCQRLWEDLGLTGIKLEI 192 (467)
T ss_dssp HHHTTTTT-TSCEEEEEEEEEECCC-CC-----CCSEEEEEEEEEETCCCSHHH---HHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHccccc-CCCEEEEEEccEEccC-CCCCC--CcCceEEEEEEEEeCCChHHH---HHHHHHHHHHHHHcCCCceEEEE
Confidence 34556788 6999999999999999 55556 999999999999999877776 78999999999999994 65555
Q ss_pred ecCC
Q psy5542 81 VRHG 84 (86)
Q Consensus 81 ~~~g 84 (86)
.+.|
T Consensus 193 n~~g 196 (467)
T 4e51_A 193 NSLG 196 (467)
T ss_dssp EECC
T ss_pred eCCC
Confidence 4433
No 32
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.45 E-value=8.3e-14 Score=101.12 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=54.7
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEEecC
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVIVRH 83 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~~~~ 83 (86)
+++++|+|+|++++|||+| +|+.| |.|||+|.|+++|+.+...++ .+++.++.+++++||++ +.....+.
T Consensus 112 ~~~~~P~rl~y~g~vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~~aD---aEvi~l~~~~l~~lgl~~~~i~l~~~ 182 (344)
T 1z7m_A 112 IKDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESADKSE---LEILSLALQVIEQLGLNKTVFEIGSA 182 (344)
T ss_dssp CCSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHHHHH---HHHHHHHHHHHHHHTCSSEEEEEEEH
T ss_pred cCCCCCeEEEEECcEEccC-CCCCC--CcceeEEEEEEEEcCCCcHHH---HHHHHHHHHHHHHCCCCcEEEEECCH
Confidence 3778999999999999999 77778 999999999999999876666 57999999999999996 76665544
No 33
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.32 E-value=2.9e-12 Score=94.72 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=57.1
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEEec
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVIVR 82 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~~~ 82 (86)
.++++|+|+|++++|||+| +|+.| |.|||+|.|+++|+.+...++ .+++.+..++++.||++ +.....+
T Consensus 98 ~~~~~P~r~~y~g~vfR~e-~~~~g--R~Ref~Q~g~ei~G~~~~~aD---aEvi~l~~~~l~~lgl~~~~i~l~~ 167 (400)
T 3od1_A 98 KDRAYPLRLAYQSNVYRAQ-QNEGG--KPAEFEQLGVELIGDGTASAD---GEVIALMIAALKRAGLSEFKVAIGH 167 (400)
T ss_dssp SSSCSCEEEEEEEEEECCC-C---C--CCSEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred ccCCCCeEEEEEcCEEeCC-CCCCC--CCCccEEeEEEEECCCChHhH---HHHHHHHHHHHHHCCCCceEEEecC
Confidence 4689999999999999999 67677 999999999999999876666 67999999999999994 6555433
No 34
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.30 E-value=4.5e-12 Score=92.97 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=54.6
Q ss_pred cCCcchhhheeeceeecCCCC-----CCCceeeceeeeeeeeEEcCC-hHhHHHHHHHHHHHHHHHHHHcCC-cEEEEEe
Q psy5542 9 HKALPLLLYQFTSKFRDELRP-----KFGLMRSREFLMKDLYAFTAS-EVDANDVYNLVGKCYDDVFNTLGI-KYRKVIV 81 (86)
Q Consensus 9 yr~LP~~l~q~~~~fR~E~~~-----~~Gl~R~reF~~~d~~~f~~~-~~~~~~~~~~~~~~~~~i~~~lgi-~~~~~~~ 81 (86)
.+++|+|+|++++|||+|..| ..| |.|||+|.|+++|+.+ ...++ .+++.++.++++.||+ ++.+...
T Consensus 113 ~~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aD---aEvi~l~~~~l~~lgl~~~~i~l~ 187 (373)
T 3rac_A 113 AGRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEEASVDVD---MDVLRLLHEASAAAGVRHHRIVVS 187 (373)
T ss_dssp TTCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSCCCHHHH---HHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred cCCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCCCCHHHH---HHHHHHHHHHHHHcCCCceEEEec
Confidence 378999999999999999654 446 9999999999999998 45555 6799999999999999 4666655
Q ss_pred cCC
Q psy5542 82 RHG 84 (86)
Q Consensus 82 ~~g 84 (86)
+.|
T Consensus 188 ~~~ 190 (373)
T 3rac_A 188 HAR 190 (373)
T ss_dssp ETT
T ss_pred CHH
Confidence 543
No 35
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.27 E-value=7.7e-12 Score=93.76 Aligned_cols=68 Identities=19% Similarity=0.144 Sum_probs=54.3
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC---cEEEEEe
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI---KYRKVIV 81 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi---~~~~~~~ 81 (86)
.++++|+|+|++++|||+| +|..| |.|||+|.|+++|+.+...++ .+++.++.++++.||+ ++.....
T Consensus 118 ~~~~~P~r~~y~g~vfR~e-~~~~g--R~ReF~Q~g~ei~G~~~~~~D---aEvi~l~~~~l~~lgl~~~~~~i~in 188 (456)
T 3lc0_A 118 RSLLLPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAE---VELVCAACWAMRSLGLSSKDVGIKVN 188 (456)
T ss_dssp TTCCSSEEEEECCEEECCC-C-------CCEEEEEEEEEESCCSTHHH---HHHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred cccCCCEEEEEeccEEecC-CCCCC--CccceEEEEEEEEcCCChHhh---HHHHHHHHHHHHHcCCCCCceEEEEc
Confidence 4678999999999999999 57667 999999999999999876666 5799999999999999 3554443
No 36
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.19 E-value=2.4e-11 Score=89.80 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=53.8
Q ss_pred cCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChH-hHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 6 KLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEV-DANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 6 i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~-~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
..+++.+|+++|+++++||+| +|+.|..|.|||+|.++++|+..+. .++ .+++.++.++++.||++-..+.
T Consensus 97 ~~~~~~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~~aD---aEvi~l~~~~l~~lgl~~~~i~ 168 (464)
T 4g84_A 97 LAMNKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPD---AECLKIMCEILSSLQIGDFLVK 168 (464)
T ss_dssp HHHTTCSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTTHHH---HHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHhcCCCCceeEEEecceecc-CCccccCccceeeecceeccCCccchhhH---HHHHHHHHHHHHHhCCCCccee
Confidence 346788999999999999999 8866666999999999999997543 345 5688999999999999644443
No 37
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.17 E-value=2.6e-11 Score=90.77 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=52.6
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhH--HHHHHHHHHHHHHHHHHcCCc-EEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDA--NDVYNLVGKCYDDVFNTLGIK-YRKV 79 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~--~~~~~~~~~~~~~i~~~lgi~-~~~~ 79 (86)
.+..+|+|+|++++|||+| +|+.| |.|||+|.++++|+.+...+ + .+++.+..++++.||++ +...
T Consensus 115 ~~~~~p~r~~y~g~vfR~e-~~~~g--r~Ref~Q~g~ei~G~~~~~a~~D---aEvi~l~~~~l~~lgl~~~~i~ 183 (465)
T 3net_A 115 NDLTFPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREKLSLLYD---AQMPAIITEIFEAVNIGDFVIR 183 (465)
T ss_dssp GGSCSSEEEEECCEEECBC---------CCEEEEEEEEEECSSCCCHHHH---HHHHHHHHHHHHHHTCSCEEEE
T ss_pred cccCCCeEEEEeccEEecC-CCCCC--CcceeEEeeEEEECCCCccchhh---HHHHHHHHHHHHHcCCCceEEE
Confidence 3568999999999999999 67777 99999999999999987667 5 57999999999999996 4443
No 38
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.14 E-value=7.7e-11 Score=83.09 Aligned_cols=67 Identities=7% Similarity=-0.145 Sum_probs=56.0
Q ss_pred CcCC-cchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEEecC
Q psy5542 8 SHKA-LPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVIVRH 83 (86)
Q Consensus 8 Syr~-LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~~~~ 83 (86)
.+++ +|+|+|++++|||+|..+. |||+|.|+|+|+.+...++ .+++.+..++++.||++ +.....+.
T Consensus 64 ~~~~~~p~R~~y~g~vfR~e~~~~------Ref~Q~g~ei~g~~~~~~D---aEvi~l~~~~l~~lgl~~~~i~l~~~ 132 (275)
T 1usy_A 64 RYSPDSQIKVWYADFVYRYSGSDL------VAEYQLGLEKVPRNSLDDS---LEVLEIIVESASEFFEGPVIVEIGHT 132 (275)
T ss_dssp TCTTCCCEEEECCEEEEEEETTEE------EEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHHCCSCEEEEEEET
T ss_pred hcCCCCceEEEEeceEEecCCCCC------CeeeEeCEEEecCCCchhH---HHHHHHHHHHHHHcCCCCeEEEeCCH
Confidence 3667 9999999999999995442 9999999999999877666 78999999999999996 65554443
No 39
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.11 E-value=1.8e-10 Score=82.10 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=56.7
Q ss_pred cCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC-cEEEEEe
Q psy5542 6 KLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI-KYRKVIV 81 (86)
Q Consensus 6 i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi-~~~~~~~ 81 (86)
+.+ +++|++++++|+|||+|..+ ..|++||+|.|++.++.+++. .+..+..+++.++++||+ ++..+..
T Consensus 143 ~~~-~~~PlrlfeiG~vFR~E~~~---~~r~~EF~qle~~i~g~~~~~---~f~elkg~le~ll~~LGl~~~~~~~~ 212 (288)
T 3dsq_A 143 ERL-WDKPIRIFEIGTCYRKESQG---AQHLNEFTMLNLTELGTPLEE---RHQRLEDMARWVLEAAGIREFELVTE 212 (288)
T ss_dssp TTT-SCSCEEEEEEEEEECSCCSS---SCCCSEEEEEEEEEETCCGGG---HHHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred HhC-CCCCEEEEEEeeEEecCCCC---CCcCccEEEEEEEEEcCCchh---hHHHHHHHHHHHHHHcCCCCcEEecC
Confidence 344 89999999999999999654 348999999999999986433 368899999999999999 5665543
No 40
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=88.05 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=52.6
Q ss_pred cCCcCCcchhhheeeceeecCCCCCC--CceeeceeeeeeeeEEcCChH-hHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 6 KLSHKALPLLLYQFTSKFRDELRPKF--GLMRSREFLMKDLYAFTASEV-DANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 6 i~Syr~LP~~l~q~~~~fR~E~~~~~--Gl~R~reF~~~d~~~f~~~~~-~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
..+++.+|+++|+++++||+| +|+. | |.|||+|.|+++|+..+. .++ .+++.++.++++.||+.-..+.
T Consensus 150 ~~~~~~~p~k~yyig~vfR~E-rp~~~~G--R~ReF~Q~g~ei~G~~~~~~aD---aEvi~l~~~~l~~lgl~~~~i~ 221 (517)
T 4g85_A 150 LAMNKLTNIKRYHIAKVYRRD-NPAMTRG--RYREFYQCDFDIAGNFDPMIPD---AECLKIMCEILSSLQIGDFLVK 221 (517)
T ss_dssp HHHTTCSCEEEEEEEEEECCC-C---------CCEEEEEEEEEESCCCTTHHH---HHHHHHHHHHHHHHCCCCEEEE
T ss_pred HHhCCCCCceeEEEeceEecc-CcccccC--ccceeeeeceeccCCccchHHH---HHHHHHHHHHHHhhcCCccccc
Confidence 345788999999999999999 6643 6 999999999999997543 345 4688999999999999644333
No 41
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.63 E-value=7.7e-08 Score=68.01 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 7 LSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 7 ~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
.+...+|+++|++++|||+|..+ .+ |.+||+|.|+..+..+. .+..+..+++.+++.||+++...
T Consensus 149 ~~~~~~p~rlfeiG~vFR~E~~~-~~--~~~Ef~ql~~~~~g~~~-----~f~elkg~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 149 DRALPDPIKIFEIGPCYRKESDG-KE--HLEEFTMLVFWQMGSGC-----TRENLESIITDFLNHLGIDFKIV 213 (290)
T ss_dssp TTTSCSSEEEEEEEEEECCCSCS-SS--CCSEEEEEEEEEESTTC-----CHHHHHHHHHHHHHHHTCCCEEE
T ss_pred hccCCCCeEEEEEcCEEecCCCC-Cc--CcchheEEEEEEEcCCh-----HHHHHHHHHHHHHHHcCCCcEEe
Confidence 34578999999999999999543 33 89999999999998753 24678899999999999987654
No 42
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.85 E-value=2.5e-05 Score=56.85 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=35.7
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGK 63 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~ 63 (86)
++||+++|||+|..++. ++.||+|.|++.-..+.++..+..+.++.
T Consensus 111 rvyqIg~~FR~E~~~~r---H~pEFt~lE~e~af~d~~d~m~~~E~li~ 156 (345)
T 3a5y_A 111 PVFQLCRSFRNEEMGRY---HNPEFTMLEWYRPHYDMYRLMNEVDDLLQ 156 (345)
T ss_dssp SEEEEEEEECCCCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred cEEEEEcceeCCCCccc---ccchhheeeeeeeCCCHHHHHHHHHHHHH
Confidence 78999999999977544 99999999999888776655544444443
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=97.78 E-value=3e-05 Score=55.04 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=33.3
Q ss_pred chhhheeeceeecCCCCC--CCceeec-eeeeeeeeEEcCChHhHHHHHH
Q psy5542 13 PLLLYQFTSKFRDELRPK--FGLMRSR-EFLMKDLYAFTASEVDANDVYN 59 (86)
Q Consensus 13 P~~l~q~~~~fR~E~~~~--~Gl~R~r-eF~~~d~~~f~~~~~~~~~~~~ 59 (86)
|.++||+++|||+|. |+ .| |-+ ||+|.|++....+.++.....+
T Consensus 88 ~~rvf~ig~~FR~E~-pq~~~~--RH~~EFtqle~e~~~~~~~~l~~~~e 134 (294)
T 1nnh_A 88 LKKIFVLSPNIRLES-RQKDDG--RHAYEFTQLDFEVERAKMEDIMRLIE 134 (294)
T ss_dssp CCEEEEEEEEECCCC-GGGCSS--SCCSEEEEEEEEEETCCHHHHHHHHH
T ss_pred ccceEEEEccEeCCC-CCCCCC--ccccceeEEEEEecCCCHHHHHHHHH
Confidence 779999999999995 22 14 667 9999999999887555443333
No 44
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.68 E-value=6.9e-05 Score=56.79 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=34.9
Q ss_pred hhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHH
Q psy5542 14 LLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNL 60 (86)
Q Consensus 14 ~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~ 60 (86)
-++||+++|||+|...+. +..||+|.|++....+.++..+..+.
T Consensus 243 ~rVyeig~~FR~E~~~~r---H~pEFT~lE~e~af~d~~dlm~l~E~ 286 (493)
T 3a74_A 243 EKVYEIGRVFRNEGISTR---HNPEFTMLELYEAYADFRDIMKLTEN 286 (493)
T ss_dssp CEEEEEEEEECCCCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred CceEEECccccCCCCCcc---cCCceeEEEEEecCCCHHHHHHHHHH
Confidence 479999999999976553 99999999999998876655444333
No 45
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.63 E-value=8.4e-05 Score=56.48 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=34.0
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNL 60 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~ 60 (86)
++||+++|||+|...+. +..||+|.|++....+.++..+..+.
T Consensus 253 rVyeIg~~FR~E~~~~r---H~pEFt~lE~e~af~d~~dlm~l~E~ 295 (504)
T 1e1o_A 253 RVFEINRNFRNEGISVR---HNPEFTMMELYMAYADYHDLIELTES 295 (504)
T ss_dssp EEEEEEEEECCCCCCC----CCSEEEEEEEEEESCCHHHHHHHHHH
T ss_pred cEEEEcccccCCCCCcc---ccCceeeeeeeecCCCHHHHHHHHHH
Confidence 78999999999976543 99999999999988876665544333
No 46
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=97.57 E-value=0.00011 Score=54.78 Aligned_cols=46 Identities=24% Similarity=0.171 Sum_probs=34.7
Q ss_pred chhhheeeceeecCCCCCCCceeec-eeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 13 PLLLYQFTSKFRDELRPKFGLMRSR-EFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 13 P~~l~q~~~~fR~E~~~~~Gl~R~r-eF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
|.++||+++|||+|. +..| |-+ ||+|.|++....+.++..+..+.+
T Consensus 200 ~~rvf~ig~~FR~E~-~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~l 246 (434)
T 1x54_A 200 LEKVWSLTPSFRAEK-SRTR--RHLTEFWHLELEAAWMDLWDIMKVEEEL 246 (434)
T ss_dssp HSEEEEEEEEECCCC-CCCS--SCCSEEEEEEEEEETCCHHHHHHHHHHH
T ss_pred ccceEEEecceecCC-CCCc--ccccEEEEeeEEEcCCCHHHHHHHHHHH
Confidence 679999999999994 3333 666 999999999988765554443333
No 47
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=97.51 E-value=0.00015 Score=53.97 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=34.0
Q ss_pred chhhheeeceeecCCCCCCCceeec-eeeeeeeeEEcCChHhHHHHHHH
Q psy5542 13 PLLLYQFTSKFRDELRPKFGLMRSR-EFLMKDLYAFTASEVDANDVYNL 60 (86)
Q Consensus 13 P~~l~q~~~~fR~E~~~~~Gl~R~r-eF~~~d~~~f~~~~~~~~~~~~~ 60 (86)
|-++||+++|||+|.. ..| |-+ ||+|.|++....+.++..+..+.
T Consensus 199 ~~rvf~ig~~FR~E~~-~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ 244 (429)
T 1wyd_A 199 VERVFEVAPAWRAEES-DTP--FHLAEFISMDVEMAFADYNDVMQLLEK 244 (429)
T ss_dssp HSEEEEEEEEECCCCC-CSS--SCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred cCceEEEcccccccCC-ccc--cccceeeEeeeeecCCCHHHHHHHHHH
Confidence 5689999999999943 333 666 99999999998876555444333
No 48
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=97.49 E-value=0.00015 Score=54.83 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=32.5
Q ss_pred chhhheeeceeecCCCCCCCceeec-eeeeeeee-EEcCChHhHHHHHHHH
Q psy5542 13 PLLLYQFTSKFRDELRPKFGLMRSR-EFLMKDLY-AFTASEVDANDVYNLV 61 (86)
Q Consensus 13 P~~l~q~~~~fR~E~~~~~Gl~R~r-eF~~~d~~-~f~~~~~~~~~~~~~~ 61 (86)
+-++||+++|||+|.. ..+ |-+ ||+|.|++ +|..+.++..+..+.+
T Consensus 244 ~~rvy~ig~~FR~E~~-~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~l 291 (487)
T 1eov_A 244 FERVYEIGPVFRAENS-NTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSEL 291 (487)
T ss_dssp CCEEEEEEEEECCCCC-CCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred CCceEEEeccEecCCC-CCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 4589999999999954 334 777 99999996 4876544443333333
No 49
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.44 E-value=0.00019 Score=55.89 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=31.5
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDAN 55 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~ 55 (86)
++||+++|||+|...+. |..||+|.|++.-..+.++..
T Consensus 218 rvfqi~~~FR~E~~~t~---r~pEFt~lE~e~af~d~~d~m 255 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRPD---RQPEFTQIDIEMSFVDQTGIQ 255 (617)
T ss_dssp EEEEEEEEECCCSSCSS---SCSEEEEEEEEEESCCHHHHH
T ss_pred cEEEEEhheecccCCCC---cCcceecceeeecCCCHHHHH
Confidence 78999999999976655 899999999998777655544
No 50
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.39 E-value=0.00029 Score=54.38 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=34.3
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
++||+++|||+|...+. |--||+|.|++.-..+.++..+..+.+
T Consensus 214 rvfqI~~~FR~E~~~~~---r~pEFT~lE~e~af~d~~dvm~~~E~l 257 (580)
T 1l0w_A 214 RYFQIARCFRDEDLRAD---RQPDFTQLDLEMSFVEVEDVLELNERL 257 (580)
T ss_dssp EEEEEEEEECCCCCCSS---CCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred CeEEEeceeeCCCCCCC---cCCCccceeeeecCCCHHHHHHHHHHH
Confidence 68999999999976655 777999999998887766655443433
No 51
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.38 E-value=0.00029 Score=54.35 Aligned_cols=45 Identities=24% Similarity=0.214 Sum_probs=35.0
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVG 62 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~ 62 (86)
++||+++|||+|...+. |--||+|.|++.-..+.++..+..+.++
T Consensus 208 rvfqI~~~FR~E~~~t~---r~pEFT~lE~e~af~d~~dvm~~~E~li 252 (585)
T 1c0a_A 208 RYYQIVKCFRDEDLRAD---RQPEFTQIDVETSFMTAPQVREVMEALV 252 (585)
T ss_dssp EEEEEEEEECCCCCBTT---BCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEeceeecCCCCCC---cCcccceeeeeecCCCHHHHHHHHHHHH
Confidence 68999999999976655 7779999999988877666554444433
No 52
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.30 E-value=0.00042 Score=52.82 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=34.8
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
++||++++||+|...+. ++-||+|.|++.--.+-++..+..+.+
T Consensus 246 rVyeig~~FR~E~~~tr---H~pEFtmlE~e~af~d~~dlm~l~E~l 289 (521)
T 3bju_A 246 RVYEIGRQFRNEGIDLT---HNPEFTTCEFYMAYADYHDLMEITEKM 289 (521)
T ss_dssp EEEEEEEEECCSCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHH
T ss_pred ceEEEEcceeCCCCCCc---cchhhhhhhhhhhcCCHHHHHHHHHHH
Confidence 68999999999977664 889999999999888766655444433
No 53
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=97.29 E-value=0.00025 Score=52.70 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=23.9
Q ss_pred chhhheeeceeecCCCCCCCceeec-eeeeeeeeEEcC-ChHhHHHH
Q psy5542 13 PLLLYQFTSKFRDELRPKFGLMRSR-EFLMKDLYAFTA-SEVDANDV 57 (86)
Q Consensus 13 P~~l~q~~~~fR~E~~~~~Gl~R~r-eF~~~d~~~f~~-~~~~~~~~ 57 (86)
+-++||+++|||+|. +..| |-+ ||+|.|++.... +.++..+.
T Consensus 190 ~~rvf~ig~~FR~E~-~~~~--RH~pEFtqle~e~~~~~d~~dlm~l 233 (422)
T 1n9w_A 190 FERVYEVAPVWRMEE-HHTS--RHLNEYLSLDVEMGFIADEEDLMRL 233 (422)
T ss_dssp HSEEEEEEEC----------------CCEEEEEEEESCSSHHHHHHH
T ss_pred CCceeEEeCceECCC-CCCC--cccceeEEeeeeeeCCCCHHHHHHH
Confidence 358999999999994 4334 776 999999999988 65544433
No 54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.25 E-value=0.00052 Score=52.52 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=34.8
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVG 62 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~ 62 (86)
++||+++|||+|...+. +.-||+|.|++.-..+.++..+..+.++
T Consensus 274 rVyeIg~~FR~E~~~~r---H~pEFtmlE~e~af~d~~dlm~l~E~li 318 (529)
T 4ex5_A 274 RVFEINRNFRNEGVSPR---HNPEFTMMEFYAAYTDYRWLMDFTERLI 318 (529)
T ss_dssp EEEEEEEEECCSCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred cEEEeehheecCCCCCC---cccHhHhhhhhhhcCCHHHHHHHHHHHH
Confidence 67999999999976654 8999999999988777666554444333
No 55
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=97.15 E-value=0.00075 Score=50.27 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=32.9
Q ss_pred hhheeeceeecCCCCCCCceeec-eeeeeeeeEEcCChHhHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSR-EFLMKDLYAFTASEVDANDVYNLVG 62 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~r-eF~~~d~~~f~~~~~~~~~~~~~~~ 62 (86)
++||+++|||+|...+. |=. ||+|.|++.-..+.++..+..+.++
T Consensus 199 rvfeIg~~FR~E~~~t~---RH~~EFT~lE~e~af~d~~d~m~~~E~li 244 (435)
T 2xgt_A 199 DVFCIAQSYRAEKSRTR---RHLAEYAHVEAECPFITLDDLMEKIEELV 244 (435)
T ss_dssp SEEEEEEEECCCSSCCT---TCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred ceEEEecceecCCCCcc---ccccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 78999999999963221 334 9999999998887766554444443
No 56
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=96.87 E-value=0.0015 Score=50.26 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=30.3
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeee-EEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLY-AFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~-~f~~~~~~~~~~~~~~ 61 (86)
++||+++|||+|...+. -=+-||+|.|++ +|..+.++..+..+.+
T Consensus 312 rVfeI~~~FR~E~~~t~--RHl~EFtmlE~e~af~~d~~d~m~~~E~l 357 (548)
T 3i7f_A 312 KVFEVGPVFRAENSNTR--RHLTEFEGLDIEMEIVENYHECIDVMEKL 357 (548)
T ss_dssp EEEEEEEECCCSCCCSS--SCCSCEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred cEEEEeeeEecCCCCCC--CcchhhhchhhhhhhhcCHHHHHHHHHHH
Confidence 68999999999965322 024699999999 5775545444343433
No 57
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=96.86 E-value=0.0025 Score=47.65 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=32.5
Q ss_pred hhheeeceeecCCCCCCCcee-eceeeeeeeeEEcCC-hHhHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMR-SREFLMKDLYAFTAS-EVDANDVYNLVG 62 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R-~reF~~~d~~~f~~~-~~~~~~~~~~~~ 62 (86)
++||+++|||+|...+. | ..||+|.|++.-..+ .++..+..+.++
T Consensus 205 rvf~i~~~FR~E~~~t~---RH~pEFt~le~e~a~~~~~~d~m~~~E~li 251 (438)
T 3nem_A 205 RVYEIAPIFRAEEHNTT---RHLNEAWSIDSEMAFIEDEEEVMSFLERLV 251 (438)
T ss_dssp EEEEEEEEECCCSSCCT---TCCSEEEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred ceEEEcceEECCCCCCc---ccccceeeeeeeeccCccHHHHHHHHHHHH
Confidence 78999999999965432 3 359999999987776 665544444433
No 58
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.66 E-value=0.0037 Score=46.91 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=31.8
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
++||+++|||+|...+. -=+-||+|.|++.-..+.++..+..+.+
T Consensus 223 rVyeig~~FR~E~~~t~--rH~pEFtmlE~e~af~d~~d~m~~~E~l 267 (456)
T 3m4p_A 223 KSFCMLSSYRAEQSRTV--RHLAEYLHLEAELPFISFEDLLNHLEDL 267 (456)
T ss_dssp SEEEEEEEECCCSCCCS--SCCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred cEEEEEhheecCCCCCC--cchHHHHHhHHHHhcCCHHHHHHHHHHH
Confidence 68999999999964221 0235999999999877766654444433
No 59
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.42 E-value=0.0042 Score=47.37 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
+..|++++++++|||+|..... ++.+|.|.++.....+ + .+..+..+.+.++++||+.
T Consensus 344 ~~~PiriFeiGrVFR~d~~Dat---HlpeFhQlegl~~~~~---v--~f~dLKg~Le~~l~~lG~~ 401 (508)
T 3l4g_A 344 PFTPVKYFSIDRVFRNETLDAT---HLAEFHQIEGVVADHG---L--TLGHLMGVLREFFTKLGIT 401 (508)
T ss_dssp SCCCEEEEEEEEEECCSCCCSS---SCSEEEEEEEEEEEES---C--CHHHHHHHHHHHHHTTTCC
T ss_pred CCCCceEEEEccEEecCCCCCC---cCCeEEEEEEEEECCC---C--CHHHHHHHHHHHHHHcCCc
Confidence 4689999999999999964433 6789999999887542 1 3466778888889999873
No 60
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.10 E-value=0.019 Score=44.00 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=48.6
Q ss_pred CcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVI 80 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~ 80 (86)
+.+..|++++++|.|||.|.. ... +.+||.|.++.....+. .+..+....+.+++.||+. +....
T Consensus 200 ~r~~~pvrLFEIG~VFr~d~~~d~t---h~~Ef~qLagli~G~~v-----df~dLKgilE~LL~~LGi~~~r~~~ 266 (534)
T 2du3_A 200 DKLPLPIKLFSIDRCFRREQGEDAT---RLYTYFSASCVLVDEEL-----SVDDGKAVAEALLRQFGFENFRFRK 266 (534)
T ss_dssp TTSCSSEEEEEEEEEECCCTTCSSS---CCSEEEEEEEEEECSSC-----CHHHHHHHHHHHHGGGTCCEEEEEE
T ss_pred hCCCCCeeEEEEeeEEecCcccccc---ccceeeEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 456899999999999998742 222 56899999999887532 1356778888999999985 54443
No 61
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=95.92 E-value=0.015 Score=42.25 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=43.1
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHc-CC
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTL-GI 74 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~l-gi 74 (86)
+..|++++++|.|||+|..... ...||+|.+++....+- .+..+....+.+++.+ |+
T Consensus 190 ~~~piriFEiGrVFR~d~~d~t---H~pEF~qlegl~~g~~v-----~f~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 190 HTPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGEGI-----AMAHLKGAIYELAQALFGP 247 (350)
T ss_dssp CCSSEEEEEEEEEECCCCCCSS---CCSEEEEEEEEEEETTC-----CHHHHHHHHHHHHHHHSCS
T ss_pred cCCCeeEEEeeeEEECCCCCCC---CCChhHEEEEEEECCCC-----CHHHHHHHHHHHHHhhcCC
Confidence 4679999999999998753322 45899999999997631 2456677777888876 75
No 62
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=95.69 E-value=0.022 Score=40.09 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=42.2
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHc-CCc
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTL-GIK 75 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~l-gi~ 75 (86)
++.|++++++|.|||+|..... ...||+|.+++....+- .+..+....+.+++.| |++
T Consensus 129 ~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~~g~~~-----df~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 129 GQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLVVDKNI-----KMSDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp TCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEEEESSC-----CHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEEECCCC-----CHHHHHHHHHHHHHHHhCCC
Confidence 3679999999999998642322 34699999999987532 1455667777778876 763
No 63
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=94.31 E-value=0.15 Score=36.81 Aligned_cols=56 Identities=7% Similarity=0.134 Sum_probs=38.6
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHc
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTL 72 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~l 72 (86)
+++..|++++++|.|||++ .... .+.+|.|.++.....+- .+..+....+.+++.|
T Consensus 179 ~~~~~pirifeiGrVyR~d-~d~t---h~p~fhqlegl~v~~~v-----~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 179 KAQQPPIRIIAPGRVYRND-YDQT---HTPMFHQMEGLIVDTNI-----SFTNLKGTLHDFLRNF 234 (327)
T ss_dssp TTCCSSCCBCCEECCBCSC-CBTT---BCSBCCEEEEEEEETTC-----CHHHHHHHHHHHHHHH
T ss_pred HhCCCCeeEEeeccEEecC-CCcc---cCCcccEEEEEEECCCC-----CHHHHHHHHHHHHHHH
Confidence 4567899999999999998 2322 45679999887764321 1355666666666665
No 64
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.59 E-value=0.27 Score=38.57 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=47.0
Q ss_pred CcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKV 79 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~ 79 (86)
+.++.|+++++++.|||++.. ... ...||.|.++-....+- .+..+....+.+++.||++ ++..
T Consensus 219 ~R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~v-----dF~DLKGvLE~LL~~LGi~~vrfr 284 (648)
T 2odr_B 219 NKKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV-----DINDGKAIAEGLLSQFGFTNFKFI 284 (648)
T ss_dssp TTSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC-----CHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred hcCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 345889999999999997642 222 24899999999886521 2466788888889999983 4443
No 65
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.54 E-value=0.28 Score=38.61 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=47.0
Q ss_pred CcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKV 79 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~ 79 (86)
+.++.|+++++++.|||++.. ... ...||.|.++-....+- .+..+....+.+++.||++ ++..
T Consensus 219 ~R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~v-----dF~DLKGvLE~LL~~LGi~~vrfr 284 (665)
T 2odr_A 219 NKKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV-----DINDGKAIAEGLLSQFGFTNFKFI 284 (665)
T ss_dssp TTSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC-----CHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred hcCCCCeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 345889999999999997642 222 24899999999886521 2466788888889999983 4443
No 66
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.48 E-value=0.28 Score=38.67 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=47.0
Q ss_pred CcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKV 79 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~ 79 (86)
+.++.|+++++++.|||++.. ... ...||.|.++-....+- .+..+....+.+++.||++ ++..
T Consensus 219 ~R~~~pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~v-----DF~DLKGvLE~LL~~LGi~~vrfr 284 (685)
T 2odr_D 219 NKKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV-----DINDGKAIAEGLLSQFGFTNFKFI 284 (685)
T ss_dssp TTSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC-----CHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred hCCCCCeEEEEeccEEecCcccccc---CCCcceEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 345889999999999997642 222 24899999999886521 2466788888889999983 4443
No 67
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=92.46 E-value=0.26 Score=37.99 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=45.6
Q ss_pred CcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 8 SHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
+.+..|++++++|.|||.+.. ... ..+||.|.++-....+- .+..+....+.+++.||++
T Consensus 212 ~r~~~pvrlFEiGrVFr~D~~~d~t---h~~ef~qLaglv~G~~v-----dF~DLKG~Le~ll~~LGi~ 272 (549)
T 2du7_A 212 KKRKLPLKLFSIDRCFRREQREDRS---HLMSYHSASCVVVGEDV-----SVDDGKVVAEGLLAQFGFT 272 (549)
T ss_dssp TTSCSSEEEEEEEEECCCCSSCSSS---CCSCEEEEEEEEECTTC-----CHHHHHHHHHHHHGGGTCC
T ss_pred hcCCCCeEEEEEeeEEecCCcccCc---CCCcceEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCC
Confidence 345889999999999997642 222 45899999999987631 3566888888899999873
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.40 E-value=0.29 Score=38.68 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=47.0
Q ss_pred CcCCcchhhheeeceeecCCC-CCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELR-PKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKV 79 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~-~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~ 79 (86)
+.++.|+++++++.|||++.. ... ...||.|.++-....+- .+..+....+.+++.||++ ++..
T Consensus 219 ~R~~~pvRLFEIGrVFR~D~~lDat---h~~EfhqLeGlv~G~~v-----DF~DLKGvLE~LL~~LGi~~vrfr 284 (701)
T 2odr_C 219 NKKPLPFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGV-----DINDGKAIAEGLLSQFGFTNFKFI 284 (701)
T ss_dssp TTSCSCEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTC-----CHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred hCCCCCeEEEEEeeEEccCcccccc---CCCcceEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 345889999999999997642 222 24899999999886521 2466788888889999983 4443
No 69
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=88.78 E-value=1 Score=34.58 Aligned_cols=58 Identities=12% Similarity=0.302 Sum_probs=41.2
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
++.|++++++|.+||.+.....| .+|+.+..+....... .|..+....+.+++.||++
T Consensus 468 ~~~~vrlFEiG~Vf~~d~~~~~~---~~e~~~la~~~~g~~~-----~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 468 MPLPLKLFEISDIVIKDSNTDVG---AKNYRHLCAVYYNKNP-----GFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp SCSCEEEEEEEEEEEECTTSTTS---EEEEEEEEEEEESSSC-----CHHHHHHHHHHHHHHTTCC
T ss_pred CCCceEEEEeeeEEecCCccccC---CccccEEEEEEECCCC-----CHHHHHHHHHHHHHHcCCC
Confidence 35799999999999976543333 4677777776554321 2566777778889999986
No 70
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=78.76 E-value=7.6 Score=25.59 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCcchhhheeeceeecCCCCC---CCceeeceeeeeeeeEEcC--------ChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 10 KALPLLLYQFTSKFRDELRPK---FGLMRSREFLMKDLYAFTA--------SEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~---~Gl~R~reF~~~d~~~f~~--------~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
+.-+++++++|.+|+.+.... ..+--.+|..+.-+..... ....+ .|..+....+.+++.||++
T Consensus 80 ~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~--df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 80 KNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENT--SVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp ---CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHH--HHHHHHHHHHHHHHHTTBC
T ss_pred CCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCc--CHHHHHHHHHHHHHHhCCC
Confidence 344589999999999764211 0000124444444333221 11222 4678899999999999987
No 71
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=78.20 E-value=5.9 Score=26.13 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=37.4
Q ss_pred cchhhheeeceeecCCCCC---CCceeeceeeeeeeeEEcCC--------hHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 12 LPLLLYQFTSKFRDELRPK---FGLMRSREFLMKDLYAFTAS--------EVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 12 LP~~l~q~~~~fR~E~~~~---~Gl~R~reF~~~d~~~f~~~--------~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
-+++++++|.+|+.+.... ..+--..|..+.-+...... ...+ .|..+....+.+++.||++
T Consensus 82 ~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~--df~d~Kg~ve~ll~~lgi~ 154 (213)
T 3ica_A 82 LSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPT--SVFELKAVVEQVLCRVGIE 154 (213)
T ss_dssp SEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBC--CHHHHHHHHHHHHHHTTCC
T ss_pred CCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCc--CHHHHHHHHHHHHHHhCCC
Confidence 3489999999998764221 10112345554444333321 1112 2577888999999999997
No 72
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=76.85 E-value=2.3 Score=33.83 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=42.0
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChH-hH-----HHHHHHHHHHHHHHHHHcCCcEE
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEV-DA-----NDVYNLVGKCYDDVFNTLGIKYR 77 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~-~~-----~~~~~~~~~~~~~i~~~lgi~~~ 77 (86)
++.|++++++|.+||.+..... . +|+.+..+-......+ .. .-.|..+....+.+++.||+++.
T Consensus 568 ~~~~vrlFEiG~Vf~~d~~~~~---~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~ 637 (795)
T 2rhq_B 568 KNKDVRLYEIGRVFFGNGEGEL---P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFS 637 (795)
T ss_dssp TCCCEEEEEEEEEEECCCTTSC---C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCCeEEEEEeeEEecCCcccC---c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 4789999999999996432111 2 6777776666553210 00 01357788888999999998644
No 73
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=75.60 E-value=18 Score=26.54 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=38.0
Q ss_pred cchhhheeeceeecCCCCCCCceeeceeeeeeeeEEc------------------------------CChHhHHHHHHHH
Q psy5542 12 LPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFT------------------------------ASEVDANDVYNLV 61 (86)
Q Consensus 12 LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~------------------------------~~~~~~~~~~~~~ 61 (86)
.| ++..+|.|||.+.--.. ..-+|.|.+...+. ...+..+..+..+
T Consensus 132 ~~-k~~~~G~VyR~D~~da~---h~n~fhQ~egv~lfe~g~~f~~~~~~~~la~~~~g~~~~~~~~~~~~~~vd~~f~dl 207 (415)
T 3cmq_A 132 LD-AFLVVGDVYRRDQIDSQ---HYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDL 207 (415)
T ss_dssp CS-EEEEEEEEECCCCCBTT---BCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHH
T ss_pred CC-CEEEeeeEEeccchhhh---hhHHhcCCCcEEEEeccceeccccccceEEEEEecCcccccccccccccccccHHHH
Confidence 35 99999999998842222 34455555544331 1122334456788
Q ss_pred HHHHHHHHHHc-CCc
Q psy5542 62 GKCYDDVFNTL-GIK 75 (86)
Q Consensus 62 ~~~~~~i~~~l-gi~ 75 (86)
....+.+++.| |++
T Consensus 208 Kg~le~ll~~lfg~~ 222 (415)
T 3cmq_A 208 KQTLTRLMAHLFGDE 222 (415)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCC
Confidence 88889999986 875
No 74
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=72.44 E-value=6.4 Score=29.44 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=36.4
Q ss_pred ceeeeeeeeEEcCCh--HhHHHHHHHHHHHHHHHHHHcCC---cEEEEEecCCC
Q psy5542 37 REFLMKDLYAFTASE--VDANDVYNLVGKCYDDVFNTLGI---KYRKVIVRHGA 85 (86)
Q Consensus 37 reF~~~d~~~f~~~~--~~~~~~~~~~~~~~~~i~~~lgi---~~~~~~~~~g~ 85 (86)
-.|.+++..-|...+ ++..+....++.-+.+=|+..|| ||+.|+||.|.
T Consensus 235 p~F~~c~~vdF~~~~G~~~La~~Vd~lL~kIr~KY~eygI~~~PfV~VKADaGT 288 (432)
T 3k1t_A 235 PYFDTCGGLDFHARLGEEQLAEKVDSLLAKIRRKYAEYGVKQEPFVIVKADAGT 288 (432)
T ss_dssp CCEEEEECCCTTSSTTHHHHHHHHHHHHHHHHHHHHHHTCCSCCCEEEEEECGG
T ss_pred HhhhccCCcccCccccHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCC
Confidence 346677777777643 44555567778888888999998 79999999984
No 75
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=69.84 E-value=21 Score=23.65 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=36.5
Q ss_pred ceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 33 LMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 33 l~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
.+...+..+.==+-+.-+.++...++++--+.+.+++..+|||+.+|.
T Consensus 82 Yii~~~~L~I~DyKVSVd~~Ss~~T~~KY~~~i~~~~~~lgi~~EivI 129 (184)
T 2xi5_A 82 YLYINNVLYIIDYKVSVSNESSVITYDKYYELTRDISDRLSIPIEIVI 129 (184)
T ss_dssp EEEETTEEEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECCEEEEEEEEEEecCcchHHHHHHHHHHHHHHhhhcCCceEEEE
Confidence 445555665555556666677788999999999999999999977664
No 76
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=62.25 E-value=15 Score=29.23 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=38.7
Q ss_pred CcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCCh-------HhHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy5542 11 ALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASE-------VDANDVYNLVGKCYDDVFNTLGIKYRK 78 (86)
Q Consensus 11 ~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~-------~~~~~~~~~~~~~~~~i~~~lgi~~~~ 78 (86)
..|++++++|.+|| | +|+.+..+-...... ... .|..+....+.+++.||+++..
T Consensus 565 ~~~vrlFEiG~Vf~-~----------~e~~~lagl~~G~~~~~~w~~~~~v--df~dlKg~le~ll~~lgi~~~~ 626 (785)
T 1b7y_B 565 PERALLFEVGRVFR-E----------REETHLAGLLFGEGVGLPWAKERLS--GYFLLKGYLEALFARLGLAFRV 626 (785)
T ss_dssp CSCEEEEEEEEEES-S----------SEEEEEEEEEESSCBSCSSSSCCBC--SHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCeEEEEEeeeec-c----------ChhhEEEEEEECCCcccccCccCCc--CHHHHHHHHHHHHHHcCCceEE
Confidence 58999999999998 3 566666665554421 112 3567888888899998986554
No 77
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=33.17 E-value=70 Score=18.28 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEecC
Q psy5542 58 YNLVGKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 58 ~~~~~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
..++++.+.+++++||..-+-|...+
T Consensus 62 akelleliarllqklgykdinvrvng 87 (96)
T 2jvf_A 62 AKELLELIARLLQKLGYKDINVRVNG 87 (96)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEET
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEcC
Confidence 36788999999999998877666544
No 78
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=31.08 E-value=49 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCcEEEEEecC
Q psy5542 63 KCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 63 ~~~~~i~~~lgi~~~~~~~~~ 83 (86)
...+++|++.||+|..+..+.
T Consensus 18 ~~aK~~L~~~gi~y~~idi~~ 38 (92)
T 2lqo_A 18 LRLKTALTANRIAYDEVDIEH 38 (92)
T ss_dssp HHHHHHHHHTTCCCEEEETTT
T ss_pred HHHHHHHHhcCCceEEEEcCC
Confidence 445677888899998887654
No 79
>2jz5_A Uncharacterized protein VPA0419; GFT protein structure, NESG, structural genomics, unknown function, PSI-2; NMR {Vibrio parahaemolyticus rimd 2210633}
Probab=30.94 E-value=83 Score=18.43 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=29.6
Q ss_pred eeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEec
Q psy5542 42 KDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIVR 82 (86)
Q Consensus 42 ~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~~ 82 (86)
.+.-.+..++++|+..++.+.+..+.+. ++|.+.+...+
T Consensus 15 a~~~~~~~~~~~Ae~~l~~l~ekAk~ve--c~I~~ei~~~~ 53 (91)
T 2jz5_A 15 ADVTIFAETKDALESELAKYIELAKSVC--AGVEYNVSELT 53 (91)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHHC--TTCEEECCCCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHHh--CceeeeEEEec
Confidence 4455666778889988899999888877 78887766554
No 80
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=29.35 E-value=1.3e+02 Score=20.02 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=34.7
Q ss_pred ceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEE
Q psy5542 21 SKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYR 77 (86)
Q Consensus 21 ~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~ 77 (86)
+++|.... |-.=.+.-=+.=.|.+........+.+..+.+.+.+.++.+||+..
T Consensus 89 ~vvrr~rG---GgavyH~pGqlv~Y~i~~~~~~~~~~~~~l~~~ii~~L~~lGi~a~ 142 (237)
T 2qhs_A 89 ELYWVERG---GDVTYHGPGQLVGYPIFPVGREVRRFLRQIEEAIVRVAAGYGISAY 142 (237)
T ss_dssp EEEECCSS---SSEEEECTTEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHTTCCCB
T ss_pred eEEEEcCC---CEEEEECCCCEEEEEEEECCcCHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 46666633 3223333334446777664445666778899999999999999743
No 81
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=29.25 E-value=64 Score=17.32 Aligned_cols=21 Identities=0% Similarity=-0.042 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCcEEEEEec
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVR 82 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~ 82 (86)
+...+++++.+|++|..+..+
T Consensus 17 C~~ak~~L~~~gi~y~~idI~ 37 (87)
T 1aba_A 17 CDNAKRLLTVKKQPFEFINIM 37 (87)
T ss_dssp HHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHcCCCEEEEEee
Confidence 345567788899999988876
No 82
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=28.47 E-value=33 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=28.7
Q ss_pred ceeecCCCCCCCceeeceeeeeeeeEEcCChHh----HHHHHHHHHHHHHHHHHH-cCCcE
Q psy5542 21 SKFRDELRPKFGLMRSREFLMKDLYAFTASEVD----ANDVYNLVGKCYDDVFNT-LGIKY 76 (86)
Q Consensus 21 ~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~----~~~~~~~~~~~~~~i~~~-lgi~~ 76 (86)
-.+|+|.||-+||+ .+|... .+.+. ..+.-..++.+|..|+++ .+.||
T Consensus 199 i~HR~E~RGvGGIF------fDdl~~--~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~ 251 (328)
T 1txn_A 199 ITHRKETRGIGGIF------FDDYDE--RDPQEILKMVEDCFDAFLPSYLTIVKRRKDMPY 251 (328)
T ss_dssp GGTCCCCCCCEEEE------EEEECS--SCHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hhhcCCCCCCCeEe------cCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36899999988864 344442 12121 233445677788887774 55554
No 83
>2khd_A Uncharacterized protein VC_A0919; alpha beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Vibrio cholerae o1 biovar el tor str}
Probab=26.25 E-value=1.1e+02 Score=18.42 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=30.8
Q ss_pred eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEec
Q psy5542 41 MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIVR 82 (86)
Q Consensus 41 ~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~~ 82 (86)
..+...+..++++|+..++.+.+..+.++ ++|.+.+...+
T Consensus 31 ~a~~~~~~~~~~~Ae~~l~~ltekAk~ve--c~I~sei~~v~ 70 (108)
T 2khd_A 31 VAEVSLFGSDKAHLEGKLAEYISLAKQVY--ANVEYEVAPVA 70 (108)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHS--TTCEEEECCCC
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHHHHHHh--CcceeeEEEec
Confidence 34556667778889989999999988877 78887776654
No 84
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=26.21 E-value=65 Score=18.14 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCcEEEEEecC
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
+...+.+++.+|++|..+..+.
T Consensus 29 C~~ak~~L~~~~i~y~~idI~~ 50 (99)
T 3qmx_A 29 CMRALALLKRKGVEFQEYCIDG 50 (99)
T ss_dssp HHHHHHHHHHHTCCCEEEECTT
T ss_pred HHHHHHHHHHCCCCCEEEEcCC
Confidence 3445667788899998887764
No 85
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=25.81 E-value=32 Score=24.66 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=29.0
Q ss_pred ceeecCCCCCCCceeeceeeeeeeeE--EcCChHhHHHHHHHHHHHHHHHHHH-cCCcE
Q psy5542 21 SKFRDELRPKFGLMRSREFLMKDLYA--FTASEVDANDVYNLVGKCYDDVFNT-LGIKY 76 (86)
Q Consensus 21 ~~fR~E~~~~~Gl~R~reF~~~d~~~--f~~~~~~~~~~~~~~~~~~~~i~~~-lgi~~ 76 (86)
-.+|+|.||-+||+ .+|... |..+-.=..+.-..++.+|..|+++ .+.||
T Consensus 182 l~HR~E~RGVGGIF------fDdl~~~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~ 234 (309)
T 1vju_A 182 IPYRNEARGIGGLF------FDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPY 234 (309)
T ss_dssp EGGGTEESSSEEEE------EEEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhcCCCCCCCeEe------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36899999988864 344442 1111111233445677888888774 56554
No 86
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=23.95 E-value=1e+02 Score=21.76 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEE
Q psy5542 59 NLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 59 ~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
..+...+.++++.+|||++.+.
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap 155 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAP 155 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCEEECC
Confidence 4566778889999999998754
No 87
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=23.15 E-value=1e+02 Score=17.31 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCcEEEEEecC
Q psy5542 63 KCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 63 ~~~~~i~~~lgi~~~~~~~~~ 83 (86)
.....+++.+|++|..+..+.
T Consensus 34 ~~ak~~L~~~~i~~~~vdi~~ 54 (109)
T 1wik_A 34 KQILEILNSTGVEYETFDILE 54 (109)
T ss_dssp HHHHHHHHHTCSCEEEEESSS
T ss_pred HHHHHHHHHcCCCeEEEECCC
Confidence 344566778899988887654
No 88
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.94 E-value=94 Score=16.91 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCcEEEEEecC
Q psy5542 63 KCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 63 ~~~~~i~~~lgi~~~~~~~~~ 83 (86)
....++++..|++|..+..+.
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~ 42 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQ 42 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTS
T ss_pred HHHHHHHHHCCCceEEEECCC
Confidence 445667888999998887654
No 89
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.55 E-value=95 Score=19.28 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=19.7
Q ss_pred eeeeeeeEEcCChHhHHHHHHHHHHH
Q psy5542 39 FLMKDLYAFTASEVDANDVYNLVGKC 64 (86)
Q Consensus 39 F~~~d~~~f~~~~~~~~~~~~~~~~~ 64 (86)
-|....|.|+++.++.++++..++++
T Consensus 94 ~T~er~~~laAe~~E~~~Wi~~ic~~ 119 (127)
T 2d9w_A 94 ETKERLYLLAAPAAERGDWVQAICLL 119 (127)
T ss_dssp EESSCEEEEEECHHHHHHHHHHHHHH
T ss_pred EeCCcEEEEEeCcHHHHHHHHHHHHH
Confidence 45778999999877777777776664
No 90
>2k3i_A Uncharacterized protein YIIS; GFT protein structure, PSI, NESG, structural genomics, structure initiative; NMR {Shigella flexneri 2A}
Probab=21.48 E-value=1.5e+02 Score=17.99 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=32.5
Q ss_pred eeeeEEcCChHhHHHHHHHHHHHHHHH--HHH-cCCcEEEEEecCC
Q psy5542 42 KDLYAFTASEVDANDVYNLVGKCYDDV--FNT-LGIKYRKVIVRHG 84 (86)
Q Consensus 42 ~d~~~f~~~~~~~~~~~~~~~~~~~~i--~~~-lgi~~~~~~~~~g 84 (86)
.+.-.+..++++|+...+.+.+..+.+ ... ++|.+.+...+.|
T Consensus 30 a~~~~~~~~~~~Ae~~l~~ltekAk~v~~esepc~I~sei~~v~~g 75 (109)
T 2k3i_A 30 SKFSRFFATREEAESFMTKLKELAAAASSADEGASVAYKIKDLEGQ 75 (109)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEEEECSSC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHhhhcCCCccceEEEEEEcCCc
Confidence 445566667889999999999999988 653 7788877776655
No 91
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=20.73 E-value=38 Score=24.66 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=29.2
Q ss_pred ceeecCCCCCCCceeeceeeeeeeeEEcCChHh----HHHHHHHHHHHHHHHHHH-cCCcE
Q psy5542 21 SKFRDELRPKFGLMRSREFLMKDLYAFTASEVD----ANDVYNLVGKCYDDVFNT-LGIKY 76 (86)
Q Consensus 21 ~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~----~~~~~~~~~~~~~~i~~~-lgi~~ 76 (86)
-.+|+|.||-+||+ .+|... .+.+. ..+.-..++.+|..|+++ .+.||
T Consensus 217 i~HR~E~RGVGGIF------fDdln~--~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~ 269 (346)
T 2aex_A 217 IAHRGERRGIGGIF------FDDLDS--PSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSF 269 (346)
T ss_dssp EGGGTEESSSEEEE------EEEECC--SCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCC
T ss_pred hhhcCCCCCCCeEe------cCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36899999988854 345443 12122 233445677888888774 55554
No 92
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=1.3e+02 Score=17.13 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEecC
Q psy5542 61 VGKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 61 ~~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
-++..+.+++..|++|..+..+.
T Consensus 26 ~~~~ak~~L~~~gi~y~~vdI~~ 48 (111)
T 2ct6_A 26 KQQDVVRFLEANKIEFEEVDITM 48 (111)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTT
T ss_pred hHHHHHHHHHHcCCCEEEEECCC
Confidence 33456677888999998887654
No 93
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=20.10 E-value=1.6e+02 Score=17.88 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=22.1
Q ss_pred eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEecC
Q psy5542 41 MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 41 ~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
+.-+++|+.+.....+.+.+++.=++ ++ |||+++.....
T Consensus 5 ~PaI~i~~~~~~~~~~~l~~vl~GIE---EE-Gip~~v~~~~~ 43 (117)
T 1nbw_B 5 PPGVRLFYDPRGHHAGAINELCWGLE---EQ-GVPCQTITYDG 43 (117)
T ss_dssp CCCEEEEECTTSCCHHHHHHHHHHHH---HT-TCCEEEEECTT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHhhhh---hc-CCCeEEEEeCC
Confidence 45677888543332323344433332 44 99999988764
Done!