Query psy5542
Match_columns 86
No_of_seqs 119 out of 1026
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 20:13:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5542.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5542hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra4 d.104.1.1 (A:242-532) 99.9 9.5E-28 6.9E-32 170.0 7.3 85 1-86 101-186 (291)
2 d1qf6a4 d.104.1.1 (A:242-532) 99.9 6E-28 4.4E-32 171.0 5.6 84 1-85 99-183 (291)
3 d1nj8a3 d.104.1.1 (A:0-267) Pr 99.9 2.1E-26 1.5E-30 160.7 7.7 86 1-86 110-196 (268)
4 d1nj1a3 d.104.1.1 (A:19-283) P 99.9 1.8E-25 1.3E-29 154.9 7.4 86 1-86 107-193 (265)
5 d1seta2 d.104.1.1 (A:111-421) 99.8 1.7E-21 1.2E-25 139.0 8.5 86 1-86 123-213 (311)
6 d1b76a2 d.104.1.1 (A:1-394) Gl 99.8 3.9E-21 2.8E-25 137.4 4.4 75 3-78 136-211 (331)
7 d1hc7a2 d.104.1.1 (A:5-276) Pr 99.7 7.9E-19 5.7E-23 120.2 5.8 80 1-81 115-194 (272)
8 d1g5ha2 d.104.1.1 (A:41-330) T 99.7 1.3E-17 9.4E-22 117.5 4.5 75 6-81 132-209 (290)
9 d1atia2 d.104.1.1 (A:1-394) Gl 99.4 4.6E-13 3.4E-17 97.5 6.7 66 9-75 205-270 (394)
10 d1z7ma1 d.104.1.1 (A:6-323) AT 98.6 3.1E-08 2.3E-12 68.3 6.8 65 8-78 91-155 (318)
11 d1qe0a2 d.104.1.1 (A:1-325) Hi 98.5 7E-08 5.1E-12 66.6 6.4 68 7-80 95-163 (325)
12 d1wu7a2 d.104.1.1 (A:3-329) Hi 98.3 9.9E-07 7.2E-11 60.9 6.9 60 10-75 94-153 (327)
13 d1kmma2 d.104.1.1 (A:4-325) Hi 98.2 1.2E-06 9.1E-11 60.1 6.8 62 8-75 94-155 (322)
14 d1h4vb2 d.104.1.1 (B:2-325) Hi 98.2 1.2E-06 8.8E-11 60.4 6.4 60 10-75 97-156 (324)
15 d1usya_ d.104.1.1 (A:) ATP pho 98.1 6.9E-06 5E-10 55.7 7.3 64 9-81 66-130 (275)
16 d1e1oa2 d.104.1.1 (A:161-502) 97.4 0.00013 9.1E-09 50.6 5.8 44 15-61 93-136 (342)
17 d1c0aa3 d.104.1.1 (A:107-287,A 97.4 0.0002 1.5E-08 49.8 6.6 44 15-61 102-145 (346)
18 d1l0wa3 d.104.1.1 (A:105-294,A 97.2 0.00032 2.4E-08 49.0 6.3 50 15-70 110-159 (356)
19 d1nnha_ d.104.1.1 (A:) Hypothe 97.0 0.00065 4.7E-08 46.4 6.0 47 15-61 89-135 (293)
20 d1eova2 d.104.1.1 (A:205-557) 96.6 0.0017 1.2E-07 44.9 5.7 45 15-61 112-157 (353)
21 d1b8aa2 d.104.1.1 (A:104-438) 96.4 0.0036 2.6E-07 42.7 6.0 46 15-62 102-148 (335)
22 d1n9wa2 d.104.1.1 (A:111-414) 95.4 0.0079 5.7E-07 40.5 4.1 38 15-54 82-120 (304)
23 d1jjca_ d.104.1.1 (A:) Phenyl- 91.6 0.13 9.4E-06 34.5 4.7 54 11-72 107-160 (266)
24 d1t1va_ c.47.1.14 (A:) SH3BGRL 66.9 3.2 0.00024 22.4 3.4 42 41-83 1-42 (93)
25 d1jjcb5 d.104.1.1 (B:475-681) 53.3 4.2 0.0003 25.1 2.5 61 13-80 93-154 (207)
26 d2adza1 b.55.1.1 (A:1-43,A:117 42.9 16 0.0012 20.7 3.7 54 8-65 46-103 (105)
27 d1fova_ c.47.1.1 (A:) Glutared 39.0 17 0.0012 18.6 3.2 23 62-84 14-36 (82)
28 d1p5dx4 d.129.2.1 (X:368-463) 32.2 17 0.0012 19.6 2.6 27 50-76 70-96 (96)
29 d1vjua_ d.248.1.1 (A:) Hypothe 30.3 11 0.00081 25.1 1.8 50 21-76 175-227 (302)
30 d1h75a_ c.47.1.1 (A:) Glutared 29.6 25 0.0018 17.6 2.9 22 62-83 14-35 (76)
31 d1r7ha_ c.47.1.1 (A:) Glutared 28.7 26 0.0019 17.3 2.9 22 62-83 14-35 (74)
32 d1abaa_ c.47.1.1 (A:) Glutared 26.8 37 0.0027 17.5 3.4 23 61-83 16-38 (87)
33 d1y74a1 a.194.1.1 (A:17-73) Li 25.2 17 0.0013 18.3 1.6 18 57-74 39-56 (57)
34 d1wika_ c.47.1.1 (A:) Thioredo 25.2 41 0.003 18.3 3.5 23 62-84 33-55 (109)
35 d1vk3a2 d.79.4.1 (A:346-507) P 24.9 62 0.0045 19.0 4.5 40 40-80 94-133 (162)
36 d1nm3a1 c.47.1.1 (A:166-239) C 23.7 35 0.0025 16.8 2.8 22 62-83 18-39 (74)
37 d1tkla_ d.248.1.1 (A:) Copropo 22.5 12 0.0009 25.2 0.8 49 22-76 197-248 (325)
38 d1nzea_ a.24.18.1 (A:) Oxygen- 21.0 55 0.004 18.1 3.5 24 50-73 89-112 (112)
39 d1k6ya1 a.4.10.1 (A:1-46) N-te 21.0 16 0.0011 17.6 0.9 24 52-75 6-29 (46)
40 d1o57a1 a.4.5.40 (A:2-74) N-te 20.7 23 0.0017 18.7 1.6 33 52-84 33-66 (73)
41 d1knwa2 c.1.6.1 (A:32-278) Dia 20.2 61 0.0044 19.6 3.9 43 42-84 154-196 (247)
No 1
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=99.94 E-value=9.5e-28 Score=170.03 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=78.3
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCC-CceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKF-GLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~-Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
|++++++|||+||++++|+++|||+|++|+. ||+|+|||+|+|+|+||+++ ++.+++.++++.+.+++++||++++.+
T Consensus 101 ~~~~~~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~e-q~~~e~~~~~~~~~~i~~~lGl~~~~v 179 (291)
T d1nyra4 101 IYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPD-QIKEEFKRVVNMIIDVYKDFGFEDYSF 179 (291)
T ss_dssp HHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred hhhcEeccccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCCc-ccHHHHHHHHHHHHHHhhhcCcCceEE
Confidence 4789999999999999999999999999986 99999999999999999865 555578999999999999999999999
Q ss_pred EecCCCC
Q psy5542 80 IVRHGAV 86 (86)
Q Consensus 80 ~~~~g~~ 86 (86)
..++|++
T Consensus 180 ~~~~~d~ 186 (291)
T d1nyra4 180 RLSYRDP 186 (291)
T ss_dssp EEEECCC
T ss_pred EEecCCC
Confidence 9998864
No 2
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=6e-28 Score=171.04 Aligned_cols=84 Identities=26% Similarity=0.292 Sum_probs=77.3
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCC-CceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKF-GLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~-Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
||+++++|||+||+++||+++|||+|++|+. ||+|+|||+|+|+|+||++++.++ ++.++++++.++|++||++++.+
T Consensus 99 ~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~-e~~~~~~~~~~i~~~lGl~~~~v 177 (291)
T d1qf6a4 99 IFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRD-EVNGCIRLVYDMYSTFGFEKIVV 177 (291)
T ss_dssp HHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHH-HHHHHHHHHHHHHGGGTCCCCEE
T ss_pred HHHccccchhhcCeeEeecceeeecccccccccccccccceeccceeEecchhhHH-HHHHHHHHHHHHHHHcCCceEEE
Confidence 4789999999999999999999999999986 999999999999999999876655 56789999999999999999999
Q ss_pred EecCCC
Q psy5542 80 IVRHGA 85 (86)
Q Consensus 80 ~~~~g~ 85 (86)
.+++|.
T Consensus 178 ~~s~~~ 183 (291)
T d1qf6a4 178 KLSTRP 183 (291)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999875
No 3
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=99.93 E-value=2.1e-26 Score=160.75 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=81.2
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceee-eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFL-MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~-~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
+|+++++|||+||+++||+++|||+|+++..|++|+|||+ |+|+|+||.+++++++++.+++++|.++|++||++++.+
T Consensus 110 i~~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~y~~if~~l~l~~~~~ 189 (268)
T d1nj8a3 110 MMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLIS 189 (268)
T ss_dssp HHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred hhhhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHHHHHHHHHhcCcceeec
Confidence 4789999999999999999999999988888999999997 888999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy5542 80 IVRHGAV 86 (86)
Q Consensus 80 ~~~~g~~ 86 (86)
.++++++
T Consensus 190 ~~~~~~~ 196 (268)
T d1nj8a3 190 KRPEWDK 196 (268)
T ss_dssp EECTTSC
T ss_pred ccccccc
Confidence 9998874
No 4
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=99.91 E-value=1.8e-25 Score=154.94 Aligned_cols=86 Identities=29% Similarity=0.375 Sum_probs=80.9
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceee-eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFL-MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKV 79 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~-~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~ 79 (86)
+++++++|||+||+++||+++|||+|.+++.||+|+|||+ |+|.|+|+.+++++++++..+++.|.++++++|+|++++
T Consensus 107 ~~~~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~l~~~~~ 186 (265)
T d1nj1a3 107 MFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLIT 186 (265)
T ss_dssp HHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred eeeeeeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhHHHHHHHHhhcCCceeEE
Confidence 4788999999999999999999999998889999999995 789999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy5542 80 IVRHGAV 86 (86)
Q Consensus 80 ~~~~g~~ 86 (86)
.++++++
T Consensus 187 ~~~~~~~ 193 (265)
T d1nj1a3 187 RRPPWDK 193 (265)
T ss_dssp ECCTTTS
T ss_pred EccCccc
Confidence 9998864
No 5
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=99.84 E-value=1.7e-21 Score=139.04 Aligned_cols=86 Identities=24% Similarity=0.376 Sum_probs=79.1
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCC----CCceeeceeeeeeeeEEcCC-hHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPK----FGLMRSREFLMKDLYAFTAS-EVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~----~Gl~R~reF~~~d~~~f~~~-~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
|++++++++++||++++++++|||.|+++. .||+|+|||++.|+|++|.+ ++++.+.++++++..+.+++.||||
T Consensus 123 ~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lp 202 (311)
T d1seta2 123 LHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 202 (311)
T ss_dssp TTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCc
Confidence 689999999999999999999999998653 49999999999999999974 4667778899999999999999999
Q ss_pred EEEEEecCCCC
Q psy5542 76 YRKVIVRHGAV 86 (86)
Q Consensus 76 ~~~~~~~~g~~ 86 (86)
|+++..++||+
T Consensus 203 yrvv~~~~~dl 213 (311)
T d1seta2 203 YRLVEVATGDM 213 (311)
T ss_dssp EEEEECCTTTS
T ss_pred chhccccCCCC
Confidence 99999999986
No 6
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.81 E-value=3.9e-21 Score=137.44 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=63.1
Q ss_pred ccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCC-cEEE
Q psy5542 3 ADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGI-KYRK 78 (86)
Q Consensus 3 ~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi-~~~~ 78 (86)
+....|||+||++++|+++|||+|++|+.||+|+|||+|+|+|+||++++..+ ++..+++.+...+.++|+ ++..
T Consensus 136 ~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~~~~q~~~-~~~~~~~~~~~~~~~~g~~~~~l 211 (331)
T d1b76a2 136 NVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEY-WHRYWVEERLKWWQEMGLSRENL 211 (331)
T ss_dssp HHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEECGGGHHH-HHHHHHHHHHHHHHHTTCCGGGE
T ss_pred hHHhccccccchhhhhccceecccccccccccccchhhhhhhhhhcCCcchhH-HHHHHHHHHHHHHHHhhccchhe
Confidence 45678999999999999999999999999999999999999999999765544 667777777777777776 4443
No 7
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.74 E-value=7.9e-19 Score=120.24 Aligned_cols=80 Identities=21% Similarity=0.209 Sum_probs=70.9
Q ss_pred CcccccCCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 1 ~~~~~i~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
|++++++||++||++++|+++|||+|++|+ |+.|.|+|.|.|+|+|+.++++++.++..+.+.+..++..+++....+.
T Consensus 115 ~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~-g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (272)
T d1hc7a2 115 MWSKWIRSWRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEG 193 (272)
T ss_dssp HHHHHCCBGGGCCEEEEEEEEEECCCSSCB-TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred hhhceeccccccceeeeecccccccccccc-cccceEEEEEEhhhhhhcccccchhHHHHHHHHHHHHHHHhcchhhhcC
Confidence 468899999999999999999999999886 6789999999999999999999999999999999999998766444443
Q ss_pred e
Q psy5542 81 V 81 (86)
Q Consensus 81 ~ 81 (86)
.
T Consensus 194 ~ 194 (272)
T d1hc7a2 194 L 194 (272)
T ss_dssp E
T ss_pred c
Confidence 3
No 8
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.67 E-value=1.3e-17 Score=117.49 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=60.8
Q ss_pred cCCcCCcchhhheeeceeecCCCC---CCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEe
Q psy5542 6 KLSHKALPLLLYQFTSKFRDELRP---KFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIV 81 (86)
Q Consensus 6 i~Syr~LP~~l~q~~~~fR~E~~~---~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~ 81 (86)
..|+++||++++|+|+|||+|+++ ..||+|+|||+|.|+|.||.+ ++.+++++.+++....++++|||+...+..
T Consensus 132 ~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~p-e~~~~~~~~~~~~~~~~~~~lGi~~~~~~~ 209 (290)
T d1g5ha2 132 DLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPT-RTSSQWLDFWLRHRLLWWRKFAMSPSNFSS 209 (290)
T ss_dssp HHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHTTCSSGGGEEE
T ss_pred hhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCC-cchHHHHHHHHHHHHHHHHHcCCChhheee
Confidence 479999999999999999977544 459999999999999999996 566779999999999999999997554443
No 9
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.36 E-value=4.6e-13 Score=97.54 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=59.7
Q ss_pred cCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 9 HKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 9 yr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
-..||+.++|||.+||||.+|+.|++|+|||+|.|+-.|+.+.+ ..+++...++.....+.++||+
T Consensus 205 r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~-~~~~~~yw~~~~~~f~~~lGi~ 270 (394)
T d1atia2 205 SRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGE-DEYWHRYWVEERLKWWQEMGLS 270 (394)
T ss_dssp TCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCceeeeeccccccccCcccCCcccccceeeeeEEEEeCCc-chHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999754 4668888888888889999995
No 10
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=98.64 E-value=3.1e-08 Score=68.25 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=50.0
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEE
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRK 78 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~ 78 (86)
...+.|.|++++++|||+|. +..| |.|||+|.++.+|..+...++ .+++.+..++++.||++-..
T Consensus 91 ~~~~~~~r~~Y~g~vfR~~~-~~~~--r~rE~~Q~g~EiiG~~~~~ad---~Eii~l~~e~l~~lgi~~~~ 155 (318)
T d1z7ma1 91 IKDSTSARYSYFGKIFRKEK-RHKG--RSTENYQIGIELFGESADKSE---LEILSLALQVIEQLGLNKTV 155 (318)
T ss_dssp CCSCCCEEEEEEEECCCCCC----------CCEEEEEEEESSCHHHHH---HHHHHHHHHHHHHHTCSSEE
T ss_pred hcccCCcccccccceeEEcc-cccc--ccchhhhhheeccccchhhHH---HHHHHHHHHHHHHhhhcccc
Confidence 45688999999999999994 4445 999999999999998766665 78999999999999997333
No 11
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=98.55 E-value=7e-08 Score=66.59 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=52.2
Q ss_pred CCcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEE
Q psy5542 7 LSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVI 80 (86)
Q Consensus 7 ~Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~ 80 (86)
.+....|+|+|.+++|||.+ ++..| |.|||+|.++-.+..+...++ .+++.+..++++.+|+. +....
T Consensus 95 ~~~~~~p~R~~Y~g~VfR~~-~~~~~--~~rE~~Q~G~EiiG~~~~~ad---~Eii~l~~~~l~~~g~~~~~i~i 163 (325)
T d1qe0a2 95 QGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVD---AEVLAMVMHIYQSFGLKHLKLVI 163 (325)
T ss_dssp GGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHH---HHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ccccccchhhheecceeeec-cccCC--ccceeeecceeecCCcCcHHH---HHHHHHHHHHHHhhCCcCcceee
Confidence 34567999999999999999 44455 999999999999999877777 77899999999999995 44433
No 12
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=98.28 E-value=9.9e-07 Score=60.85 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=52.4
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
...|+|+|.+++|||++ ++..| |.|||+|.++-.+..+...++ .+++.+..++++.+|++
T Consensus 94 ~~~p~k~~y~g~VfR~~-~~~~g--~~re~~Q~G~EiiG~~~~~~D---~Eii~l~~~~l~~~~~~ 153 (327)
T d1wu7a2 94 LQRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEAD---AEVIALASSILDRLGLQ 153 (327)
T ss_dssp CCSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHTTTT
T ss_pred ccccceeeccCcceecc-ccccC--CcchhhhhhhhhcCCcchHHH---HHHHHHHHHHHhccccc
Confidence 46799999999999999 55556 999999999999998877777 67889999999999983
No 13
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=98.24 E-value=1.2e-06 Score=60.07 Aligned_cols=62 Identities=24% Similarity=0.253 Sum_probs=53.3
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
.....|+++|+++++||.| ++..| |.|||+|.++..+..+...++ .+++.+...+++.+|+.
T Consensus 94 ~~~~~p~r~~y~g~v~r~~-~~~~g--r~re~~Q~g~EiiG~~~~~ad---~Eii~l~~~~l~~lgl~ 155 (322)
T d1kmma2 94 LLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDID---AELIMLTARWWRALGIS 155 (322)
T ss_dssp CSTTCCEEEEEEEEEECCC-CCBTT--BCSEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHHTCG
T ss_pred hhhhhhhhHhhcccccccC-CCCCC--ccchhhhhhHHHhccccchhH---HHHHHHHHHHHHhcCCC
Confidence 3457899999999999999 45556 999999999999998777776 67888888999999985
No 14
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=98.23 E-value=1.2e-06 Score=60.35 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=49.4
Q ss_pred CCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 10 KALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 10 r~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
...|+|++.++++||.+. +..| |.|||+|.++-.+..+...++ .+++.+..++++.+|+.
T Consensus 97 ~~~p~r~~Y~g~VfR~~~-~~~g--r~re~~Q~g~EiiG~~~~~ad---~Eii~l~~~~l~~l~~~ 156 (324)
T d1h4vb2 97 WPQPVRLWMAGPMFRAER-PQKG--RYRQFHQVNYEALGSENPILD---AEAVVLLYECLKELGLR 156 (324)
T ss_dssp SSSSEEEEEEEEEECCCC-C------CCEEEEEEEEEESCCCHHHH---HHHHHHHHHHHHHTTCC
T ss_pred hchhhhheeeCcccccCc-ccCC--CcceeccccccccCCCChHHH---HHHHHHHHHHHHHhccc
Confidence 357999999999999994 4456 999999999999998777777 67889999999999986
No 15
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Probab=98.05 E-value=6.9e-06 Score=55.72 Aligned_cols=64 Identities=8% Similarity=-0.144 Sum_probs=52.5
Q ss_pred cCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCc-EEEEEe
Q psy5542 9 HKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIK-YRKVIV 81 (86)
Q Consensus 9 yr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~~ 81 (86)
..+.|+|+|.+++|||.+. + +.|||.|..+-.+..+...++ .+++.+..++++.+|++ +.....
T Consensus 66 ~~~~p~k~~Y~g~VfR~~~-~-----~~re~~Q~G~EiiG~~~~~aD---~Evi~l~~~~l~~lgi~~~~i~l~ 130 (275)
T d1usya_ 66 SPDSQIKVWYADFVYRYSG-S-----DLVAEYQLGLEKVPRNSLDDS---LEVLEIIVESASEFFEGPVIVEIG 130 (275)
T ss_dssp TTCCCEEEECCEEEEEEET-T-----EEEEEEEEEEEEESCCSHHHH---HHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred CCCCCeeeeEEeeEEEeCC-C-----cccceeecCceeechhhHHHH---HHHHHHHHHHHHhhcccccEEEec
Confidence 4567999999999999983 3 579999999999988766666 77899999999999996 444433
No 16
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=97.42 E-value=0.00013 Score=50.62 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=33.4
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
++||+++|||+|..++. ++-||+|.|++.-..+.++..+..+.+
T Consensus 93 ~vf~i~p~FR~E~~~~r---Hl~EFtmlE~e~a~~~~~d~m~~~e~l 136 (342)
T d1e1oa2 93 RVFEINRNFRNEGISVR---HNPEFTMMELYMAYADYHDLIELTESL 136 (342)
T ss_dssp EEEEEEEEECCCCCCC----CCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred ceeeecccccccccccc---chHHHHHHHHHHHhhhhhhHHHhhhHH
Confidence 68999999999976654 889999999999877765554333333
No 17
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=97.39 E-value=0.0002 Score=49.85 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=34.2
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
++||++++||+|..++. +.-||+|.|++.-..+.++..+..+.+
T Consensus 102 ~Vf~i~~~FR~E~~~~~---H~~EFtmLE~e~a~~~~~~~m~~~E~l 145 (346)
T d1c0aa3 102 RYYQIVKCFRDEDLRAD---RQPEFTQIDVETSFMTAPQVREVMEAL 145 (346)
T ss_dssp EEEEEEEEECCCCCBTT---BCSEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred ceEEEeeeccccccCch---hhhHhhhhccccccccHhHhHHHHHHH
Confidence 68999999999987766 779999999998777665555443433
No 18
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=97.24 E-value=0.00032 Score=49.02 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=37.5
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFN 70 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~ 70 (86)
++||++++||+|.+++. +.-||+|.|++....+-+++.+. +-+++..+++
T Consensus 110 ~Vf~i~~~FRaE~~~t~---H~~EFtmLE~e~~~~~~~~~m~~---~E~li~~v~~ 159 (356)
T d1l0wa3 110 RYFQIARCFRDEDLRAD---RQPDFTQLDLEMSFVEVEDVLEL---NERLMAHVFR 159 (356)
T ss_dssp EEEEEEEEECCCCCCSS---CCSEEEEEEEEEESCCHHHHHHH---HHHHHHHHHH
T ss_pred cEEEEeccccccccCCc---chhhhhHHHHhhhHHHHHHHHHH---HHHHHHHHHH
Confidence 67999999999988876 67899999999998876665433 3333444444
No 19
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=97.04 E-value=0.00065 Score=46.44 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=31.7
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~ 61 (86)
++||++++||+|.....+---+-||+|.|++.-..+-++..+..+.+
T Consensus 89 ~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~l 135 (293)
T d1nnha_ 89 KIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERL 135 (293)
T ss_dssp EEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHH
T ss_pred cceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHH
Confidence 68999999999953222212456999999998766665554444443
No 20
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.64 E-value=0.0017 Score=44.89 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEcCC-hHhHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTAS-EVDANDVYNLV 61 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~-~~~~~~~~~~~ 61 (86)
++||+++|||+|...+. --.-||+|.|+|.-..+ -+.+.+..+.+
T Consensus 112 ~vf~I~~~FR~E~~~~~--rH~pEFtmLE~y~a~~d~~~~i~~~~e~l 157 (353)
T d1eova2 112 RVYEIGPVFRAENSNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSEL 157 (353)
T ss_dssp EEEEEEEEECCCCCCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred cceeechhhhccccccc--cccchhcccccccccchhhHHHHHHHHHH
Confidence 68999999999964432 02469999999976544 34444343433
No 21
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=96.39 E-value=0.0036 Score=42.75 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=29.6
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeee-eEEcCChHhHHHHHHHHH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDL-YAFTASEVDANDVYNLVG 62 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~-~~f~~~~~~~~~~~~~~~ 62 (86)
++||+++|||+|..+.. --.-||+|.+. +.+..+..++.+..+.++
T Consensus 102 ~if~i~~~FR~e~~~~~--rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~ 148 (335)
T d1b8aa2 102 RVYEIAPIFRAEEHNTT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLV 148 (335)
T ss_dssp EEEEEEEEECCCSSCCS--SCCSEEEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred hHHHhhccccccccccc--ccchHHHhhhHHHHHHHhhhhHHHHHHHHH
Confidence 68999999999965432 02349999954 445466655554444443
No 22
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=95.38 E-value=0.0079 Score=40.50 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=18.9
Q ss_pred hhheeeceeecCCCCCCCceeeceeeeeeeeEEc-CChHhH
Q psy5542 15 LLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFT-ASEVDA 54 (86)
Q Consensus 15 ~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~-~~~~~~ 54 (86)
++||+++|||+|..+.. -..-||+|.|.+.-. .+.+..
T Consensus 82 ~if~i~~~FR~ee~~~~--rh~~EF~~le~~~~~~~~~~~~ 120 (304)
T d1n9wa2 82 RVYEVAPVWRMEEHHTS--RHLNEYLSLDVEMGFIADEEDL 120 (304)
T ss_dssp EEEEEEEC---------------CCEEEEEEEESCSSHHHH
T ss_pred cceeehhhccccccccc--ccccHHHHHHHHHhhhhhHHHH
Confidence 58999999999854322 146799999998743 443333
No 23
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=91.61 E-value=0.13 Score=34.54 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=37.9
Q ss_pred CcchhhheeeceeecCCCCCCCceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHc
Q psy5542 11 ALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTL 72 (86)
Q Consensus 11 ~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~l 72 (86)
.-|+++...+.|||+|.--+. .+.+|.|.|+.....+-.- ..+......+++.+
T Consensus 107 ~~p~~~~~~g~VyRrd~iD~t---H~p~FhQ~eg~~vd~~~~~-----~~Lk~~l~~~~~~~ 160 (266)
T d1jjca_ 107 TPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGEGIAM-----AHLKGAIYELAQAL 160 (266)
T ss_dssp CSSEEEEEEEEEECCSCCCSS---CCSEEEEEEEEEEETTCCH-----HHHHHHHHHHHHHH
T ss_pred CCCceEEecccceecCCCCCc---ccccceeeeeeeccccccH-----HHHHHHHHHHHHHh
Confidence 358999999999999865544 6889999999998764322 23444445555553
No 24
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=66.89 E-value=3.2 Score=22.41 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=29.6
Q ss_pred eeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEecC
Q psy5542 41 MKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 41 ~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
|.++.+|+++. +.......-++-...+++..||+|..+..+.
T Consensus 1 m~~i~vy~ts~-~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~ 42 (93)
T d1t1va_ 1 MSGLRVYSTSV-TGSREIKSQQSEVTRILDGKRIQYQLVDISQ 42 (93)
T ss_dssp CCCEEEEECSS-CSCHHHHHHHHHHHHHHHHTTCCCEEEETTS
T ss_pred CCCEEEEEccC-cCChhhHHHHHHHHHHHHHCCCceEEEEecC
Confidence 45667777653 3333445667778889999999999887654
No 25
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}
Probab=53.33 E-value=4.2 Score=25.09 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=36.3
Q ss_pred chhhheeeceeecCCCCCC-CceeeceeeeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 13 PLLLYQFTSKFRDELRPKF-GLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 13 P~~l~q~~~~fR~E~~~~~-Gl~R~reF~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
+++++++|++|+....... |++-..... + + ... .... .|-.+..+++.++..+|+.+....
T Consensus 93 ~~~lFEiG~vf~~~~~~~~~~~~~g~~~~--~-~-~~~-~~~~--df~~~Kg~v~~ll~~lg~~~~~~~ 154 (207)
T d1jjcb5 93 RALLFEVGRVFREREETHLAGLLFGEGVG--L-P-WAK-ERLS--GYFLLKGYLEALFARLGLAFRVEA 154 (207)
T ss_dssp EEEEEEEEEEESSSEEEEEEEEEEESCBS--C-T-TSS-CCBC--HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ceeeEeeeeeeeccccccchhhhhhcccc--c-c-ccc-ccch--hHHHHHHHHHHHHHhhhccccccc
Confidence 3789999999987644332 322222111 1 1 111 1222 256788888999999999876544
No 26
>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.93 E-value=16 Score=20.71 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=34.8
Q ss_pred CcCCcchhhheeeceeecCCCCCCCceeeceeeeeeeeEE----cCChHhHHHHHHHHHHHH
Q psy5542 8 SHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAF----TASEVDANDVYNLVGKCY 65 (86)
Q Consensus 8 Syr~LP~~l~q~~~~fR~E~~~~~Gl~R~reF~~~d~~~f----~~~~~~~~~~~~~~~~~~ 65 (86)
..|..|++++.++...+.. -|+. |.=|..-.|+-.. |.+..+|+.+|..+...+
T Consensus 46 d~k~IPLKmcyvtR~~~~~-D~En---R~lElhSpDG~~t~iLR~kD~a~A~~WF~Aihs~i 103 (105)
T d2adza1 46 EAKHVSLKMAYVSRRCTPT-DPEP---RYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 103 (105)
T ss_dssp SCEEEETTTCEEEEECCSS-CCSS---CEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ccceeeeeeEEeeecccCC-CCcc---cEEEEECCCCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4678999999999877654 3444 4444444444322 446677888888776543
No 27
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=38.97 E-value=17 Score=18.56 Aligned_cols=23 Identities=4% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCcEEEEEecCC
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVRHG 84 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~~g 84 (86)
+...+.++++.||+|..+..+..
T Consensus 14 C~~ak~~L~~~~i~y~~~di~~~ 36 (82)
T d1fova_ 14 CHRAKALLSSKGVSFQELPIDGN 36 (82)
T ss_dssp HHHHHHHHHHHTCCCEEEECTTC
T ss_pred HHHHHHHHHHcCCCeEEEeccch
Confidence 45567788999999999887654
No 28
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.24 E-value=17 Score=19.63 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=18.0
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHcCCcE
Q psy5542 50 SEVDANDVYNLVGKCYDDVFNTLGIKY 76 (86)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~i~~~lgi~~ 76 (86)
+++.+++....+.+.+..+...|.|||
T Consensus 70 s~~~~~~l~~~~~~~l~~i~~~l~~~f 96 (96)
T d1p5dx4 70 TEEELERIKTVFRNQLKAVDSSLPVPF 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 455566666677777777766777775
No 29
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]}
Probab=30.29 E-value=11 Score=25.12 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=28.1
Q ss_pred ceeecCCCCCCCceeeceeeeeeeeE--EcCChHhHHHHHHHHHHHHHHHHHH-cCCcE
Q psy5542 21 SKFRDELRPKFGLMRSREFLMKDLYA--FTASEVDANDVYNLVGKCYDDVFNT-LGIKY 76 (86)
Q Consensus 21 ~~fR~E~~~~~Gl~R~reF~~~d~~~--f~~~~~~~~~~~~~~~~~~~~i~~~-lgi~~ 76 (86)
-.+|+|.||-+|++ .+++.. +..+-.=+.+.-..++++|..|+++ ...++
T Consensus 175 lpHR~E~RGiGGIF------fD~l~~~~~~~~~~f~~~vg~~fl~~Y~~Iv~~r~~~~~ 227 (302)
T d1vjua_ 175 IPYRNEARGIGGLF------FDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPY 227 (302)
T ss_dssp EGGGTEESSSEEEE------EEEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccccccccceee------eeeeccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35799999988854 233221 1111111233446777888888774 55544
No 30
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=29.64 E-value=25 Score=17.61 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCcEEEEEecC
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
+...+++|++.|++|..+..+.
T Consensus 14 C~~ak~~L~~~~i~y~~~~i~~ 35 (76)
T d1h75a_ 14 CHATKRAMENRGFDFEMINVDR 35 (76)
T ss_dssp HHHHHHHHHHTTCCCEEEETTT
T ss_pred HHHHHHHHHhcCceeEEEeecC
Confidence 4556778899999999887764
No 31
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=28.71 E-value=26 Score=17.25 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCcEEEEEecC
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
+...+.+|++.|++|..+..+.
T Consensus 14 C~~ak~~L~~~~i~~~~~~i~~ 35 (74)
T d1r7ha_ 14 CTATKKALDRAGLAYNTVDISL 35 (74)
T ss_dssp HHHHHHHHHHTTCCCEEEETTT
T ss_pred HHHHHHHHHHcCCceEEEEccC
Confidence 4455677888999998887654
No 32
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}
Probab=26.81 E-value=37 Score=17.51 Aligned_cols=23 Identities=0% Similarity=-0.080 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEecC
Q psy5542 61 VGKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 61 ~~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
.+...++++++.|++|.....+.
T Consensus 16 ~C~~AK~lL~~~~i~y~~~~i~~ 38 (87)
T d1abaa_ 16 PCDNAKRLLTVKKQPFEFINIMP 38 (87)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCS
T ss_pred hHHHHHHHHHHcCCCceeccccc
Confidence 45667889999999998877654
No 33
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.23 E-value=17 Score=18.29 Aligned_cols=18 Identities=22% Similarity=0.624 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHcCC
Q psy5542 57 VYNLVGKCYDDVFNTLGI 74 (86)
Q Consensus 57 ~~~~~~~~~~~i~~~lgi 74 (86)
.+..+.++|+++++..+|
T Consensus 39 F~~avREVYehvyeTvdi 56 (57)
T d1y74a1 39 FCSAIREVYEQLYDTLDI 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 456778888888876543
No 34
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.23 E-value=41 Score=18.25 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCcEEEEEecCC
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVRHG 84 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~~g 84 (86)
+...+++|+.+|++|..+..+..
T Consensus 33 c~~ak~lL~~~~i~~~~~~v~~~ 55 (109)
T d1wika_ 33 SKQILEILNSTGVEYETFDILED 55 (109)
T ss_dssp HHHHHHHHHHTCSCEEEEESSSC
T ss_pred HHHHHHHHHhcCCCceEEEeccc
Confidence 44556788999999999887653
No 35
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]}
Probab=24.95 E-value=62 Score=19.00 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=29.4
Q ss_pred eeeeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEE
Q psy5542 40 LMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVI 80 (86)
Q Consensus 40 ~~~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~ 80 (86)
-..|.--|+.++..- ..+.++++.+.+..+.+|+|++--.
T Consensus 94 ai~d~LnFg~Pe~~~-~~~~~~v~gl~~~~~~~~iPvVgGn 133 (162)
T d1vk3a2 94 AITNCVNYGDPDVDP-VGLSAMMTALKNACEFSGVPVASGN 133 (162)
T ss_dssp EEEEEEECSCTTTCH-HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHhhhcCCCCCCH-HHHHHHHHHHHHHHHHhCCCcccce
Confidence 356777788775443 3567888888888899999998653
No 36
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=23.73 E-value=35 Score=16.82 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCcEEEEEecC
Q psy5542 62 GKCYDDVFNTLGIKYRKVIVRH 83 (86)
Q Consensus 62 ~~~~~~i~~~lgi~~~~~~~~~ 83 (86)
+...+++|++.|++|..+..+.
T Consensus 18 C~~ak~lL~~~~i~~~~~~v~~ 39 (74)
T d1nm3a1 18 CAKAKQLLHDKGLSFEEIILGH 39 (74)
T ss_dssp HHHHHHHHHHHTCCCEEEETTT
T ss_pred HHHHHHHHHHcCCCeEEEEccC
Confidence 4556778888999998887654
No 37
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.48 E-value=12 Score=25.20 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=26.6
Q ss_pred eeecCCCCCCCceeeceeeeeeee--EEcCChHhHHHHHHHHHHHHHHHHHH-cCCcE
Q psy5542 22 KFRDELRPKFGLMRSREFLMKDLY--AFTASEVDANDVYNLVGKCYDDVFNT-LGIKY 76 (86)
Q Consensus 22 ~fR~E~~~~~Gl~R~reF~~~d~~--~f~~~~~~~~~~~~~~~~~~~~i~~~-lgi~~ 76 (86)
.+|+|.||-+|++ .+|.. .+..+-+=+.+.-..++++|..|+++ .+.+|
T Consensus 197 pHR~E~RGvGGIF------fD~l~~~~~e~~f~f~~~vg~~fl~~Y~~Iv~kr~~~~~ 248 (325)
T d1tkla_ 197 THRKETRGIGGIF------FDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRKDMPY 248 (325)
T ss_dssp GGGTEESSCCEEE------EEEECSSCHHHHHHHHHHHHTTHHHHHHHHHHTTTTSCC
T ss_pred ccccccccchhhh------hhhhcccchHHHHHHHHHHHHhHHHHHHHHHHHhccccc
Confidence 5799999988865 23321 11111111233445677778888774 44443
No 38
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=21.01 E-value=55 Score=18.07 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=17.3
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHcC
Q psy5542 50 SEVDANDVYNLVGKCYDDVFNTLG 73 (86)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~i~~~lg 73 (86)
+...+...|.+....+..++..||
T Consensus 89 d~~~a~~~Y~~t~~~ld~~la~lg 112 (112)
T d1nzea_ 89 SPTEAEKYYGQTVSNINEVLAKLG 112 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567777888888888877766
No 39
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=21.01 E-value=16 Score=17.62 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHcCCc
Q psy5542 52 VDANDVYNLVGKCYDDVFNTLGIK 75 (86)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~~~lgi~ 75 (86)
+.|.+..++.......+-..+|||
T Consensus 6 e~Aqe~H~k~H~n~~~L~~~F~ip 29 (46)
T d1k6ya1 6 DKAQEEHEKYHSNWRAMASDFNLP 29 (46)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCHHHHHHHcCCC
Confidence 566667777777778777888887
No 40
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=20.66 E-value=23 Score=18.70 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHcCCc-EEEEEecCC
Q psy5542 52 VDANDVYNLVGKCYDDVFNTLGIK-YRKVIVRHG 84 (86)
Q Consensus 52 ~~~~~~~~~~~~~~~~i~~~lgi~-~~~~~~~~g 84 (86)
++|..++.+-+.+++++|++.|+- ...+...+|
T Consensus 33 ~~AKSsISEDl~iik~~~~~~~~G~leTi~GAaG 66 (73)
T d1o57a1 33 ESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAG 66 (73)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTSEEEEEECSTTC
T ss_pred chhhchhhhHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 455667788899999999999984 444444443
No 41
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]}
Probab=20.18 E-value=61 Score=19.62 Aligned_cols=43 Identities=7% Similarity=-0.103 Sum_probs=24.9
Q ss_pred eeeeEEcCChHhHHHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Q psy5542 42 KDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIVRHG 84 (86)
Q Consensus 42 ~d~~~f~~~~~~~~~~~~~~~~~~~~i~~~lgi~~~~~~~~~g 84 (86)
..+.+||...+.-...+.+.+..+.+.+.++|.+...+...+|
T Consensus 154 l~GlH~HigSq~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG 196 (247)
T d1knwa2 154 LVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGG 196 (247)
T ss_dssp EEEEECCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSEEECCCC
T ss_pred eeeehhccCccchhhHHHHHHHHHHHHHhhccCCceEEEecCc
Confidence 4455666543332223344445555556778888888887776
Done!