RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5542
(86 letters)
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 50.8 bits (121), Expect = 1e-09
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKF-GLMRSREFLMKDLYAFTASEVDANDVYN 59
+ S++ LPL + +F S R+E GLMR R F D + F E ++V
Sbjct: 99 IFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNG 158
Query: 60 LVGKCYDDVFNTLGIKYRKV 79
+ + D+++T G + V
Sbjct: 159 CI-RLVYDMYSTFGFEKIVV 177
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 50.2 bits (119), Expect = 2e-09
Identities = 14/84 (16%), Positives = 27/84 (32%)
Query: 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNL 60
+ + + L + Q FR+E+ P+ + R REF ++ F D
Sbjct: 134 FKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYW 193
Query: 61 VGKCYDDVFNTLGIKYRKVIVRHG 84
V + + V +
Sbjct: 194 VEERLKWWQEMGLSRENLVPYQQP 217
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 41.4 bits (96), Expect = 2e-06
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFL-MKDLYAFTASEVDANDVYN 59
M+ H LP+ +YQ + FR E + L+R RE + K+ + +++ +A +
Sbjct: 110 MMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVK 169
Query: 60 LVGKCYDDVFNTLGIKYRKVIVRHG 84
Y F+TLGI Y
Sbjct: 170 EAISIYKKFFDTLGIPYLISKRPEW 194
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 39.5 bits (91), Expect = 9e-06
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 7 LSHKALPLLLYQFTSKFRDELRPKFGLMRSREF-LMKDLYAFTASEVDANDVYNLVGKCY 65
SH LP+ YQ + FR E + L+R RE K+ + A+ +A + + Y
Sbjct: 113 RSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIY 172
Query: 66 DDVFNTLGIKYRKV 79
+ FN+LGI Y
Sbjct: 173 KEFFNSLGIPYLIT 186
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 32.7 bits (74), Expect = 0.002
Identities = 14/79 (17%), Positives = 27/79 (34%)
Query: 5 MKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKC 64
+ + + L + Q FR+E+ P+ + R REF ++ F D V +
Sbjct: 201 LDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEER 260
Query: 65 YDDVFNTLGIKYRKVIVRH 83
+ V +
Sbjct: 261 LKWWQEMGLSRENLVPYQQ 279
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 511
Score = 25.8 bits (56), Expect = 0.66
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 18 QFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLVGKCYDDVFNTLGIKYR 77
+ + + EL+ + + FT+ V + + K Y+ N
Sbjct: 360 EIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHY--- 416
Query: 78 KVIVRHGAV 86
++ H AV
Sbjct: 417 -ILDPHTAV 424
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 24.1 bits (51), Expect = 2.9
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 1 MVADMKLSHKALPLLLYQFTSKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNL 60
M + S + LP LL Q+ + R E +R+ EFL ++ + A+ +A +
Sbjct: 115 MWSKWIRSWRDLPQLLNQWGNVVRWE-MRTRPFLRTSEFLWQEGHTAHATREEAEEEVRR 173
Query: 61 VGKCYDDVFNTLGIKYR 77
+ Y +
Sbjct: 174 MLSIYARLAREYAAIPV 190
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 23.8 bits (50), Expect = 3.5
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 75 KYRKVIVRHG 84
KY+ +++RHG
Sbjct: 1 KYKLIMLRHG 10
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 23.2 bits (50), Expect = 6.6
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 21 SKFRDELRPKFGLMRSREFLMKDLYAFTASEVDANDVYNLV 61
+D L +F E L +D A E V ++
Sbjct: 672 KSLKDFLHDEFVRRSVEEGLGEDFIDKIADETIGTTVDEIL 712
>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId:
287]}
Length = 298
Score = 23.0 bits (49), Expect = 6.7
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 48 TASEVDANDVYNLVGKCYDDVFNTLGIKYRKVIVRH 83
+ DA+ +V K Y D F T + ++ + H
Sbjct: 70 YSPLNDAHFFGGVVFKLYRDWFGTSPLTHKLYMKVH 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.413
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,559
Number of extensions: 11797
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 13
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)