BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5543
         (60 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AP3|A Chain A, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap
 pdb|3AP3|B Chain B, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap
 pdb|3AP3|C Chain C, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap
 pdb|3AP3|D Chain D, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap
          Length = 355

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 37/41 (90%)

Query: 15  RVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPMLA 55
           ++ERS+DQVIKPVNLEAL+KW G IP DV++DM +IAPMLA
Sbjct: 259 KIERSTDQVIKPVNLEALSKWTGHIPGDVVRDMAQIAPMLA 299


>pdb|3AP1|A Chain A, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap And C4 Peptide
 pdb|3AP1|B Chain B, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap And C4 Peptide
 pdb|3AP2|A Chain A, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
           Phosphate Ion
 pdb|3AP2|B Chain B, Crystal Structure Of Human Tyrosylprotein
           Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
           Phosphate Ion
          Length = 337

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 37/41 (90%)

Query: 15  RVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPMLA 55
           ++ERS+DQVIKPVNLEAL+KW G IP DV++DM +IAPMLA
Sbjct: 259 KIERSTDQVIKPVNLEALSKWTGHIPGDVVRDMAQIAPMLA 299


>pdb|1U6R|A Chain A, Transition State Analog Complex Of Muscle Creatine Kinase
           (R134k) Mutant
 pdb|1U6R|B Chain B, Transition State Analog Complex Of Muscle Creatine Kinase
           (R134k) Mutant
          Length = 380

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 6   SFKTYTPPPRVERSSDQVIKPVNLEALTKWVGKI 39
           S K YT PP   R   + ++ +++EAL    G+ 
Sbjct: 135 SIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEF 168


>pdb|1I0E|A Chain A, Crystal Structure Of Creatine Kinase From Human Muscle
 pdb|1I0E|B Chain B, Crystal Structure Of Creatine Kinase From Human Muscle
 pdb|1I0E|C Chain C, Crystal Structure Of Creatine Kinase From Human Muscle
 pdb|1I0E|D Chain D, Crystal Structure Of Creatine Kinase From Human Muscle
          Length = 381

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 6   SFKTYTPPPRVERSSDQVIKPVNLEALTKWVGKI 39
           S K YT PP   R   + ++ +++EAL    G+ 
Sbjct: 136 SIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEF 169


>pdb|2CRK|A Chain A, Muscle Creatine Kinase
          Length = 381

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 6   SFKTYTPPPRVERSSDQVIKPVNLEALTKWVGKI 39
           S K YT PP   R   + ++ +++EAL    G+ 
Sbjct: 136 SIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEF 169


>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
           Udp-N-Acetylglucosamine 4- Epimerase Complexed With
           Udp-N-Acetylgalactosamine
 pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
           Udp-N-Acetylglucosamine 4- Epimerase Complexed With
           Udp-Glucose
          Length = 352

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 6   SFKTYTPPPRVERSSDQVIKPVNLEALTKWVGKIPEDV 43
           S  TY   P + +  D + KP++  A+TK+V ++  DV
Sbjct: 153 SSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADV 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,997,390
Number of Sequences: 62578
Number of extensions: 61746
Number of successful extensions: 104
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 6
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)