Query psy5543
Match_columns 60
No_of_seqs 49 out of 51
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:14:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ap1_A Protein-tyrosine sulfot 97.8 1E-05 3.5E-10 56.1 2.8 50 10-59 254-303 (337)
2 4gbm_A CURM sulfotransferase; 93.2 0.037 1.3E-06 36.5 1.8 46 9-54 258-306 (323)
3 4gox_A Polyketide synthase; ol 58.5 4 0.00014 26.4 1.4 34 24-59 267-300 (313)
4 1zd1_A Sulfotransferase 4A1; S 54.4 8.3 0.00028 25.5 2.5 39 21-59 239-278 (284)
5 1jid_A Signal recognition part 30.6 37 0.0013 21.8 2.6 47 14-60 8-59 (128)
6 1rzs_A Antirepressor, regulato 29.3 32 0.0011 18.0 1.8 19 27-45 22-40 (61)
7 2eqx_A Kelch repeat and BTB do 26.0 20 0.00068 20.7 0.7 31 29-59 72-102 (105)
8 3ktw_A SRP19, signal recogniti 24.5 41 0.0014 21.1 2.0 48 12-60 9-59 (109)
9 2lh0_A Histone chaperone RTT10 20.9 41 0.0014 19.9 1.3 18 34-51 7-24 (70)
10 2hin_A GP39, repressor protein 16.9 72 0.0024 17.9 1.7 25 27-51 22-48 (71)
No 1
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold, transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A* 3ap3_A*
Probab=97.80 E-value=1e-05 Score=56.09 Aligned_cols=50 Identities=60% Similarity=0.904 Sum_probs=47.1
Q ss_pred cCCCCCcccccchhccccchhhhhhhcCCCChHHHhchHhhhhHhhcCCC
Q psy5543 10 YTPPPRVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPMLASGNG 59 (60)
Q Consensus 10 ~vsLSk~E~STdQVvkpvn~eaLskW~g~iP~dv~~dm~~iaPmL~~l~~ 59 (60)
.++.+++++|.+||.+|++...+.+|...++.+.++.+..++|+|..||-
T Consensus 254 ~~~~~~~~~s~~q~~~~i~~~~vg~Wk~~ls~~~~~~~~~~~~~l~~lGY 303 (337)
T 3ap1_A 254 GVSLSKIERSTDQVIKPVNLEALSKWTGHIPGDVVRDMAQIAPMLAQLGY 303 (337)
T ss_dssp SBCCCTTSTTHHHHTSCSCSTTSSTTTTCSCHHHHHHHHHHCTHHHHTTC
T ss_pred cccccccCcchhhhcCCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 57778889999999999999999999999999999999999999999985
No 2
>4gbm_A CURM sulfotransferase; polyketide synthase, curacin, PAP, PAPS; HET: A3P P6G; 1.62A {Moorea producta}
Probab=93.17 E-value=0.037 Score=36.54 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=37.4
Q ss_pred ccCCCCCcccccchhc--cccchhhhhhhcC-CCChHHHhchHhhhhHh
Q psy5543 9 TYTPPPRVERSSDQVI--KPVNLEALTKWVG-KIPEDVMKDMDEIAPML 54 (60)
Q Consensus 9 ~~vsLSk~E~STdQVv--kpvn~eaLskW~g-~iP~dv~~dm~~iaPmL 54 (60)
.+++.+.++.++.|+. ++|+.+++.+|.. ..|+++.+.+..+++.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~Wr~~~~~~~~~~~~~~~~~~l 306 (323)
T 4gbm_A 258 GGVHAASLSISDPNFLKHNTIDESLADKWKTIQLPYPLKSETQRIASQL 306 (323)
T ss_dssp CSSGGGGCSSSCCCGGGCSSCCGGGGGGGGTCCCSSCCCHHHHHHHHHT
T ss_pred cCccccccccCCcccccCCCCCHHHHHHHhhhcCHHHHHHHHHHHHHHc
Confidence 4567788899999985 5799999999975 58888888888877765
No 3
>4gox_A Polyketide synthase; olefin synthase, hydrocarbon, sulfotran PAPS, PAP, 3'phosphoadenosine-5'phosphosulfate, transferase; HET: A3P; 2.15A {Synechococcus SP}
Probab=58.53 E-value=4 Score=26.42 Aligned_cols=34 Identities=9% Similarity=0.019 Sum_probs=26.1
Q ss_pred ccccchhhhhhhcCCCChHHHhchHhhhhHhhcCCC
Q psy5543 24 IKPVNLEALTKWVGKIPEDVMKDMDEIAPMLASGNG 59 (60)
Q Consensus 24 vkpvn~eaLskW~g~iP~dv~~dm~~iaPmL~~l~~ 59 (60)
.++|+.+++.+|...++++-++.+. ..++.+||-
T Consensus 267 ~~~i~~~~~~~Wr~~l~~~~i~~~~--~~l~~~lGY 300 (313)
T 4gox_A 267 HKTIDPALADKWRSITLPAALQLDT--IQLAETFAY 300 (313)
T ss_dssp CSSCCGGGGGGGGSCCCSSCCCHHH--HHHHHHTTC
T ss_pred cCCCChhHHhhHhhcCCHHHHHHHH--HHHHHHHCC
Confidence 4789999999999988766555443 467788884
No 4
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural genomics conso transferase; 2.24A {Homo sapiens}
Probab=54.39 E-value=8.3 Score=25.52 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=32.4
Q ss_pred chhccccchhhhhhhcCCCChHHHhchHhhh-hHhhcCCC
Q psy5543 21 DQVIKPVNLEALTKWVGKIPEDVMKDMDEIA-PMLASGNG 59 (60)
Q Consensus 21 dQVvkpvn~eaLskW~g~iP~dv~~dm~~ia-PmL~~l~~ 59 (60)
+|+..|++....-.|..+++++..+.+.+++ ..|+.+|.
T Consensus 239 ~~~~~~~rkg~~g~Wk~~~s~e~~~~~~~~~~~~l~~~g~ 278 (284)
T 1zd1_A 239 NAEALPVGRGRVGLWKDIFTVSMNEKFDLVYKQKMGKCDL 278 (284)
T ss_dssp CTTSSBSSTTCTTGGGGTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCCcccCCCCCCCcccCCHHHHHHHHHHHHHHhCCCCC
Confidence 6777899999999999999999999998764 56666653
No 5
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=30.58 E-value=37 Score=21.75 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCcccccchhccccchhh-hhhhcCC-CChHH---HhchHhhhhHhhcCCCC
Q psy5543 14 PRVERSSDQVIKPVNLEA-LTKWVGK-IPEDV---MKDMDEIAPMLASGNGP 60 (60)
Q Consensus 14 Sk~E~STdQVvkpvn~ea-LskW~g~-iP~dv---~~dm~~iaPmL~~l~~~ 60 (60)
...+.+.-||+=|+|+|+ +++=-|- +|.+. -..+.+|+--++.||.+
T Consensus 8 ~~~d~~r~~vIyP~Y~Ds~~tr~eGRRV~k~~aVenPt~~EI~~a~~~Lgl~ 59 (128)
T 1jid_A 8 SPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLN 59 (128)
T ss_dssp STTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCC
T ss_pred CCcCccceEEECcccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCC
Confidence 456777889999999999 5554444 77774 34556666666777753
No 6
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.27 E-value=32 Score=18.04 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=13.5
Q ss_pred cchhhhhhhcCCCChHHHh
Q psy5543 27 VNLEALTKWVGKIPEDVMK 45 (60)
Q Consensus 27 vn~eaLskW~g~iP~dv~~ 45 (60)
|.-.++++|.+.+|..-.-
T Consensus 22 vs~~~Vs~we~~~p~~~~~ 40 (61)
T 1rzs_A 22 ISDAAVSQWKEVIPEKDAY 40 (61)
T ss_dssp CCHHHHHHCCSBCCHHHHH
T ss_pred CCHHHHHHHHhhCCHHHHH
Confidence 4557889999778875443
No 7
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.00 E-value=20 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.4
Q ss_pred hhhhhhhcCCCChHHHhchHhhhhHhhcCCC
Q psy5543 29 LEALTKWVGKIPEDVMKDMDEIAPMLASGNG 59 (60)
Q Consensus 29 ~eaLskW~g~iP~dv~~dm~~iaPmL~~l~~ 59 (60)
.+|+-+|+.+=+++=.+.+.++-...|.+|+
T Consensus 72 f~av~~Wv~~d~~~R~~~~~~Ll~~VR~~~~ 102 (105)
T 2eqx_A 72 TEAIEAWINFNKEEREAFAESLRTSLKEIGE 102 (105)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCCEESS
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999887777778888877787775
No 8
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=24.55 E-value=41 Score=21.12 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=34.5
Q ss_pred CCCCcccccchhccccchhhhhhhcCC-CChHHHh--chHhhhhHhhcCCCC
Q psy5543 12 PPPRVERSSDQVIKPVNLEALTKWVGK-IPEDVMK--DMDEIAPMLASGNGP 60 (60)
Q Consensus 12 sLSk~E~STdQVvkpvn~eaLskW~g~-iP~dv~~--dm~~iaPmL~~l~~~ 60 (60)
||-.+-.-...|+=|+|+|++++=-|- +|.+ ++ ...+|+--++.||.+
T Consensus 9 ~~~~~~~~~~ivIyP~Y~Ds~sr~eGRRVpk~-V~nP~~~EI~~a~~~Lgl~ 59 (109)
T 3ktw_A 9 SLRDLKEENRIVIWPSYFFSPTRSKGRRLARI-PYKIKTEELVSTLRELGLD 59 (109)
T ss_dssp CTTGGGGGTEEEECTHHHHCSSGGGTCCSSCC-SSCCCHHHHHHHHHHTTCC
T ss_pred hHHHHHhCCeEEEeecccCCcchhcCCccccc-CCCCCHHHHHHHHHHcCCC
Confidence 555666666788999999995544454 8888 54 356788888888864
No 9
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=20.89 E-value=41 Score=19.88 Aligned_cols=18 Identities=11% Similarity=0.527 Sum_probs=15.1
Q ss_pred hhcCCCChHHHhchHhhh
Q psy5543 34 KWVGKIPEDVMKDMDEIA 51 (60)
Q Consensus 34 kW~g~iP~dv~~dm~~ia 51 (60)
.|.+++|.++-+.+..|.
T Consensus 7 ~wL~~LP~~Lq~kV~aIV 24 (70)
T 2lh0_A 7 LFLDELPESLSRKIGTVV 24 (70)
T ss_dssp CGGGGSCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 399999999988887664
No 10
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=16.88 E-value=72 Score=17.95 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=16.8
Q ss_pred cchhhhhhh--cCCCChHHHhchHhhh
Q psy5543 27 VNLEALTKW--VGKIPEDVMKDMDEIA 51 (60)
Q Consensus 27 vn~eaLskW--~g~iP~dv~~dm~~ia 51 (60)
|...|+++| -+.+|+.-...+..++
T Consensus 22 Vs~~aVs~W~~g~~iP~~~~~~Ie~~T 48 (71)
T 2hin_A 22 VTPGAVYQWLQAGEIPPLRQSDIEVRT 48 (71)
T ss_dssp SCHHHHHHHHHHTSCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 456788999 4569986655555443
Done!