Query psy5543
Match_columns 60
No_of_seqs 49 out of 51
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 20:14:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5543.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5543hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b0ga1 d.58.7.1 (A:1-83) Spli 23.3 15 0.0011 18.7 1.1 24 34-59 11-34 (83)
2 d1nija2 d.237.1.1 (A:224-318) 21.0 3.8 0.00028 22.3 -1.8 21 24-44 9-33 (95)
3 d1s4ka_ a.35.1.6 (A:) Putative 21.0 14 0.001 22.6 0.7 36 16-51 19-57 (120)
4 d2cqha1 d.58.7.1 (A:2-81) IGF- 19.9 21 0.0015 18.1 1.3 22 35-58 5-26 (80)
5 d1ea0a2 c.1.4.1 (A:423-1193) A 16.8 21 0.0015 27.1 1.0 44 8-54 413-456 (771)
6 d2cpda1 d.58.7.1 (A:223-308) A 16.2 18 0.0013 18.4 0.4 23 34-58 11-33 (86)
7 d1ofda2 c.1.4.1 (A:431-1239) A 16.1 27 0.002 26.6 1.6 44 8-54 422-465 (809)
8 d2htna1 a.25.1.1 (A:1-158) Bac 16.0 13 0.00097 20.8 -0.2 36 25-60 33-68 (158)
9 d1whxa_ d.58.7.1 (A:) Probable 15.4 24 0.0017 18.4 0.8 22 35-58 14-35 (111)
10 d1v97a6 d.145.1.3 (A:192-414) 15.3 6.2 0.00046 24.9 -2.0 20 4-23 105-124 (223)
No 1
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}
Probab=23.26 E-value=15 Score=18.70 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=17.6
Q ss_pred hhcCCCChHHHhchHhhhhHhhcCCC
Q psy5543 34 KWVGKIPEDVMKDMDEIAPMLASGNG 59 (60)
Q Consensus 34 kW~g~iP~dv~~dm~~iaPmL~~l~~ 59 (60)
=|+++||.++ +-.++.-+++.+|.
T Consensus 11 l~V~nLp~~~--t~~~l~~~f~~~G~ 34 (83)
T d2b0ga1 11 LFLTNLPEET--NEMMLSMLFNQFPG 34 (83)
T ss_dssp EEEESCCTTC--CHHHHHHHHTTSTT
T ss_pred EEEECCCCCC--CHHHHHhhhccCcc
Confidence 4788899887 44567778877763
No 2
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.97 E-value=3.8 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=15.9
Q ss_pred ccccchhhhhhhcCCC----ChHHH
Q psy5543 24 IKPVNLEALTKWVGKI----PEDVM 44 (60)
Q Consensus 24 vkpvn~eaLskW~g~i----P~dv~ 44 (60)
-+|++.++|..|...+ |++++
T Consensus 9 ~~P~d~~~f~~~l~~ll~~~~~~il 33 (95)
T d1nija2 9 DYPVDISEVSRVMENLLLESADKLL 33 (95)
T ss_dssp SSCBCHHHHHHHHHHHHHHTTTTEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3799999999998765 55543
No 3
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=20.96 E-value=14 Score=22.59 Aligned_cols=36 Identities=14% Similarity=0.384 Sum_probs=27.1
Q ss_pred cccccchhccccchhhhhhhcC---CCChHHHhchHhhh
Q psy5543 16 VERSSDQVIKPVNLEALTKWVG---KIPEDVMKDMDEIA 51 (60)
Q Consensus 16 ~E~STdQVvkpvn~eaLskW~g---~iP~dv~~dm~~ia 51 (60)
+|-+++-+..-++.++-.+|-. .||++|++.|...+
T Consensus 19 i~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~m~ 57 (120)
T d1s4ka_ 19 IEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKEMK 57 (120)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4555666777789999999983 39999988776554
No 4
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.87 E-value=21 Score=18.08 Aligned_cols=22 Identities=14% Similarity=0.522 Sum_probs=13.4
Q ss_pred hcCCCChHHHhchHhhhhHhhcCC
Q psy5543 35 WVGKIPEDVMKDMDEIAPMLASGN 58 (60)
Q Consensus 35 W~g~iP~dv~~dm~~iaPmL~~l~ 58 (60)
|+++||.++-+ .++--+++..|
T Consensus 5 ~V~nLp~~~te--~~L~~~F~~~G 26 (80)
T d2cqha1 5 YIGNLSPAVTA--DDLRQLFGDRK 26 (80)
T ss_dssp EEECCCTTCCH--HHHHHHHHHTT
T ss_pred EEECCCCCCCH--HHHHHHHHHhC
Confidence 67888877633 45555555555
No 5
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=16.80 E-value=21 Score=27.07 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=36.4
Q ss_pred cccCCCCCcccccchhccccchhhhhhhcCCCChHHHhchHhhhhHh
Q psy5543 8 KTYTPPPRVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPML 54 (60)
Q Consensus 8 ~~~vsLSk~E~STdQVvkpvn~eaLskW~g~iP~dv~~dm~~iaPmL 54 (60)
.+-|+++.|| +....+||++..+.| +|.|+++-...++.-|-++
T Consensus 413 ~~pI~i~eVE-~~~~I~k~f~isaMS--fGALS~~A~~aLa~ga~~~ 456 (771)
T d1ea0a2 413 KAPVPVDEVE-SITAIRKRFITPGMS--MGALSPEAHGTLNVAMNRI 456 (771)
T ss_dssp SCCCCGGGSC-CHHHHHTTEEEEECC--BTTBCHHHHHHHHHHHHHT
T ss_pred CCCccccccc-chhhhheeecccccc--ccccCHHHHHHHHHHHHhc
Confidence 3569999999 778899999999988 7889998888887766554
No 6
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.24 E-value=18 Score=18.35 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=14.5
Q ss_pred hhcCCCChHHHhchHhhhhHhhcCC
Q psy5543 34 KWVGKIPEDVMKDMDEIAPMLASGN 58 (60)
Q Consensus 34 kW~g~iP~dv~~dm~~iaPmL~~l~ 58 (60)
=|+++||.++-++ ++.-+++.+|
T Consensus 11 l~V~nLp~~~te~--~l~~~F~~~g 33 (86)
T d2cpda1 11 LYVRNLMLSTSEE--MIEKEFNNIK 33 (86)
T ss_dssp EEEESCCTTCCHH--HHHHHHHTTS
T ss_pred EEEcCCCCCCCHH--HHHHhhcccc
Confidence 4788888876443 4555555554
No 7
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
Probab=16.13 E-value=27 Score=26.56 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=36.3
Q ss_pred cccCCCCCcccccchhccccchhhhhhhcCCCChHHHhchHhhhhHh
Q psy5543 8 KTYTPPPRVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPML 54 (60)
Q Consensus 8 ~~~vsLSk~E~STdQVvkpvn~eaLskW~g~iP~dv~~dm~~iaPmL 54 (60)
++.|+|+.|| |....+||+++.+.| +|.|+++..+.++.-+-++
T Consensus 422 ~~pIpldeVE-p~~~I~k~f~~~aMS--~GslS~~a~~ala~aa~~~ 465 (809)
T d1ofda2 422 QPAISLEEVE-SVESIVKRFCTGGMS--LGALSREAHETLAIAMNRL 465 (809)
T ss_dssp SCCCCGGGSC-CHHHHHTTEECCCBC--TTTSCHHHHHHHHHHHHHH
T ss_pred CCCCChhhcc-hhhhhhhhhcccccc--cccccHHHHHHHHHHHHHh
Confidence 4569999999 666799999999998 4999999988888766544
No 8
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=15.97 E-value=13 Score=20.79 Aligned_cols=36 Identities=22% Similarity=0.075 Sum_probs=30.5
Q ss_pred cccchhhhhhhcCCCChHHHhchHhhhhHhhcCCCC
Q psy5543 25 KPVNLEALTKWVGKIPEDVMKDMDEIAPMLASGNGP 60 (60)
Q Consensus 25 kpvn~eaLskW~g~iP~dv~~dm~~iaPmL~~l~~~ 60 (60)
+=.+...+.+|+...-.+-+.-+..++-.+..|||.
T Consensus 33 ~~~~~~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~ 68 (158)
T d2htna1 33 KNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGL 68 (158)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445677888999888889999999999999999973
No 9
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.42 E-value=24 Score=18.40 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=15.4
Q ss_pred hcCCCChHHHhchHhhhhHhhcCC
Q psy5543 35 WVGKIPEDVMKDMDEIAPMLASGN 58 (60)
Q Consensus 35 W~g~iP~dv~~dm~~iaPmL~~l~ 58 (60)
|+++||.++-+ .+|.-+++.+|
T Consensus 14 ~V~nLp~~~t~--~~L~~~F~~fG 35 (111)
T d1whxa_ 14 LAKNLPAGTLA--AEIQETFSRFG 35 (111)
T ss_dssp EEESCCTTCCH--HHHHHHHHTTS
T ss_pred EEECCCCCCCH--HHHHhhhhccC
Confidence 88999987654 44666776665
No 10
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.31 E-value=6.2 Score=24.94 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.3
Q ss_pred cccccccCCCCCcccccchh
Q psy5543 4 QFSFKTYTPPPRVERSSDQV 23 (60)
Q Consensus 4 ~~~i~~~vsLSk~E~STdQV 23 (60)
.++||+.+.++.+|.+-.+.
T Consensus 105 ~l~IGA~vTl~~l~~~l~~~ 124 (223)
T d1v97a6 105 GISFGAACALSSVEKTLLEA 124 (223)
T ss_dssp EEEEETTCBHHHHHHHHHHH
T ss_pred eEEEcccccHHHHHHHHHHh
Confidence 46889999999888875444
Done!