RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5543
         (60 letters)



>gnl|CDD|216686 pfam01762, Galactosyl_T, Galactosyltransferase.  This family
           includes the galactosyltransferases
           UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
           galactosyltransferase and UDP-Gal:beta-GlcNAc beta
           1,3-galactosyltranferase. Specific
           galactosyltransferases transfer galactose to GlcNAc
           terminal chains in the synthesis of the lacto-series
           oligosaccharides types 1 and 2.
          Length = 196

 Score = 27.3 bits (61), Expect = 0.34
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 34  KWVGKIPEDVMKDMDEIAPMLASGNGP 60
           K++GKI +DV    D++  +L  GN  
Sbjct: 82  KYIGKIDDDVYFFPDKLLSLLDRGNIN 108


>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family.  ATHILA is a group of
           Arabidopsis thaliana retrotransposons belonging to the
           Ty3/gypsy family of the long terminal repeat (LTR) class
           of eukaryotic retrotransposons. The central region of
           ATHILA retrotransposons contains two or three open
           reading frames (ORFs). This family represents the ORF1
           product. The function of ORF1 is unknown.
          Length = 456

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 3   PQFSFKTYTPPPRVERSSDQVIKPVNLEALTKWVGK 38
             + F+ + PP R  +S  +  K  N   L KW  K
Sbjct: 397 SMYHFEEHVPPARESKSLSEAHK--NNSKLQKWCKK 430


>gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3.  This
           domain family is found in eukaryotes, and is typically
           between 229 and 245 amino acids in length. The proteins
           in this family have been shown to be proto-oncogenes
           implicated in the development of breast cancer.
          Length = 245

 Score = 25.8 bits (57), Expect = 1.2
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 1   MGPQFSFKTYTPPPRVERSSD 21
            GP+FSF     P   E  + 
Sbjct: 199 QGPKFSFYVMQSPTGKELENS 219


>gnl|CDD|216941 pfam02233, PNTB, NAD(P) transhydrogenase beta subunit.  This family
           corresponds to the beta subunit of NADP transhydrogenase
           in prokaryotes, and either the protein N- or C terminal
           in eukaryotes. The domain is often found in conjunction
           with pfam01262. Pyridine nucleotide transhydrogenase
           catalyzes the reduction of NAD+ to NADPH. A complete
           loss of activity occurs upon mutation of Gly314 in E.
           coli.
          Length = 464

 Score = 25.0 bits (55), Expect = 2.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 38  KIPEDVMKDMDEIAPMLAS 56
            +P D++ +MDEI    A 
Sbjct: 365 NVPYDIVLEMDEINDDFAD 383


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,105,798
Number of extensions: 212799
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 5
Length of query: 60
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 29
Effective length of database: 9,562,628
Effective search space: 277316212
Effective search space used: 277316212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)