RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5543
         (60 letters)



>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
           transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
           3ap3_A*
          Length = 337

 Score = 52.1 bits (125), Expect = 4e-10
 Identities = 30/42 (71%), Positives = 37/42 (88%)

Query: 14  PRVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPMLA 55
            ++ERS+DQVIKPVNLEAL+KW G IP DV++DM +IAPMLA
Sbjct: 258 SKIERSTDQVIKPVNLEALSKWTGHIPGDVVRDMAQIAPMLA 299


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 9   TYTPPPRVERSSDQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPMLAS 56
             T    ++  S  +        L K++   P+D+ +++    P   S
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331



 Score = 30.2 bits (67), Expect = 0.024
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 24  IKPVNLEALTKWVGKIPEDVMKDMDE 49
           I  + L  +  W   I  DVM  +++
Sbjct: 387 IPTILLSLI--WFDVIKSDVMVVVNK 410


>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
           1,mitochondrial; oxidoreductase, thioester reduction,
           fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
           c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
          Length = 364

 Score = 27.3 bits (61), Expect = 0.22
 Identities = 4/26 (15%), Positives = 10/26 (38%)

Query: 32  LTKWVGKIPEDVMKDMDEIAPMLASG 57
           +T+ +    E     +++I      G
Sbjct: 301 VTELLKNNKELKTSTLNQIIAWYEEG 326


>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
           structural GE joint center for structural genomics,
           JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
          Length = 349

 Score = 26.1 bits (58), Expect = 0.71
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 32  LTKWVGKIPEDVMKDMDEIAPMLASG 57
           L++W+ +  E     + E     + G
Sbjct: 290 LSEWMRQFKERRGPAILEAQKRFSDG 315


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.5 bits (52), Expect = 2.2
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 17/40 (42%)

Query: 17 ERSSDQVIKPVNLEA-LTKWVGKIPEDVMKDMDEIAPMLA 55
          E+   Q +K   L+A L  +     +         AP LA
Sbjct: 18 EK---QALK--KLQASLKLYA---DDS--------APALA 41


>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
           biosynthesis, NADP+ oxidoreductase (phosphorylating),
           domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
           d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
           1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
           1pu2_A* 1q2x_A*
          Length = 367

 Score = 24.1 bits (53), Expect = 2.8
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 29  LEALTKWVGKIPEDVMKDMDEIAPMLASG 57
           L A   W   +P D    M E+ P   +G
Sbjct: 295 LAAHNPWAKVVPNDREITMRELTPAAVTG 323


>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
           reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
           {Thermomyces lanuginosus} PDB: 2uvb_A*
          Length = 1878

 Score = 23.7 bits (51), Expect = 4.1
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 18  RSSDQVIKPVNL------EALTKWVGKIPEDVMKDMDEIAPMLA 55
           R S  V+ P N       EAL  ++      +  D+D + P  A
Sbjct: 705 RGSQLVVVPFNQGSKQDVEALVNYIYDTKNGLGWDLDYVVPFAA 748


>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
           dehydrogenase/reductase, oxidoreductase, 2-ENOY
           thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
          Length = 357

 Score = 23.8 bits (52), Expect = 4.5
 Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 32  LTKWVGKI-PEDVMKDMDEIAPMLASG 57
           L++W     P+   + +  +  ++  G
Sbjct: 296 LSQWKKDHSPDQFKELILTLCDLIRRG 322


>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
           GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
           3zvo_Y* 3uoq_W*
          Length = 529

 Score = 23.5 bits (51), Expect = 5.5
 Identities = 2/25 (8%), Positives = 9/25 (36%)

Query: 6   SFKTYTPPPRVERSSDQVIKPVNLE 30
               + P P   ++  + ++    +
Sbjct: 271 GLVEWAPAPMPRQTDTRTVEASEDK 295


>1ne8_A Conserved hypothetical protein YDCE; structural genomics, NEW YORK
           SGX research center for structural genomics, PSI; HET:
           1PG; 2.10A {Bacillus subtilis} SCOP: b.34.6.2
          Length = 117

 Score = 23.0 bits (50), Expect = 7.3
 Identities = 7/30 (23%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 21  DQVIKPVNLEALTKWVGKIPEDVMKDMDEI 50
           +Q I+ ++ + LT  +  + +++M  +DE 
Sbjct: 79  EQ-IRTIDKQRLTDKITHLDDEMMDKVDEA 107


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 953,556
Number of extensions: 42073
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 13
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)