RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5543
         (60 letters)



>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
            (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 24.7 bits (52), Expect = 0.77
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 21   DQVIKPVNLEALTKWVGKIPEDVMKDMDEIAPML 54
               IK +    L +     P  V++ +D +   L
Sbjct: 1113 HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPL 1146


>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
          {Bordetella bronchiseptica [TaxId: 518]}
          Length = 191

 Score = 22.0 bits (47), Expect = 5.5
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 35 WVGKIPEDVMKDMDEIAPMLA 55
          + G+   D+M  M E+  +  
Sbjct: 40 YAGRYEPDLMPFMAELRSLGT 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,745
Number of extensions: 8078
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)