BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5544
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLP 64
G+ II P + P Y G + +D T W DKCVPLVREITFEN EELTEEGLP
Sbjct: 182 GDNIIYKPPGHSAP---DXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLP 238
Query: 65 FLILFYAPGDTETIKLFKSIVSEQLLGEK 93
FLILF+ DTE++++F++ V+ QL+ EK
Sbjct: 239 FLILFHXKEDTESLEIFQNEVARQLISEK 267
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 4 PGEPIIVFRPDVTTPLEEHE--TYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEE 61
PG P I+ + LE+ + R L Y T + +R+ + EN + T E
Sbjct: 300 PGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGE 359
Query: 62 GLPFLILF-YAPGDTETIKLFKSI 84
GL + +LF + PG T + +S+
Sbjct: 360 GLEWGVLFGFGPGITVETVVLRSV 383
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 4 PGEPIIVFRPDVTTPLEEHE--TYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEE 61
PG P I+ + LE+ + R L Y T + +R+ + EN + T E
Sbjct: 300 PGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGE 359
Query: 62 GLPFLILF-YAPGDTETIKLFKSI 84
GL + +LF + PG T + +S+
Sbjct: 360 GLEWGVLFGFGPGITVETVVLRSV 383
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 17 TPLEEHETYRG---NLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPG 73
+ ++E Y G +++ D + W + +P EI + E GLP LFY
Sbjct: 190 SAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFY--N 247
Query: 74 DTETIKLFKSIVSE 87
D E ++ +K + +E
Sbjct: 248 DEEELEEYKPLFTE 261
>pdb|1BND|B Chain B, Structure Of The Brain-Derived Neurotrophic
Factor(Slash)neurotrophin 3 Heterodimer
Length = 119
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 EHETYRGNLSAYDETKVWTADKCVPL-VREITFENAEELTEEGLPFLILFY 70
EH+++RG +S D +W DK + +R E+ + P FY
Sbjct: 3 EHKSHRGEVSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTQNSPVKQYFY 53
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|2V47|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2OM7|K Chain K, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WDI|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|C Chain C, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|2WH4|C Chain C, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of
4).
pdb|2WRL|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|2X9S|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|2XQE|C Chain C, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The
70s Ribosome With A Gtp Analog
pdb|2XTG|C Chain C, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|C Chain C, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y13|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Cognate Codon On The 70s Ribosome.
pdb|2Y17|C Chain C, Ef-Tu Complex 3
pdb|2Y19|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome
Length = 229
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D KV+T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVE 43
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D KV+T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKVYTIDEAARLVKELATAKFDETVE 43
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From
Thermus Thermophilus
pdb|2OV7|B Chain B, The First Domain Of The Ribosomal Protein L1 From
Thermus Thermophilus
pdb|2OV7|C Chain C, The First Domain Of The Ribosomal Protein L1 From
Thermus Thermophilus
pdb|2OUM|A Chain A, The First Domain Of L1 From Thermus Thermophilus
pdb|2VPL|A Chain A, The Structure Of The Complex Between The First Domain Of
L1 Protein From Thermus Thermophilus And Mrna From
Methanococcus Jannaschii
pdb|2VPL|C Chain C, The Structure Of The Complex Between The First Domain Of
L1 Protein From Thermus Thermophilus And Mrna From
Methanococcus Jannaschii
Length = 137
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 42
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus
With Threonine 217 Replaced By Valine
pdb|3U56|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217v
Tthl1 In Complex With 80nt 23s Rna From Thermus
Thermophilus
Length = 229
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 43
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus
Thermophilus
Length = 228
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 43
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 43
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5
A Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3U4M|A Chain A, Crystal Structure Of Ribosomal Protein Tthl1 In Complex
With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 43
>pdb|1NF4|A Chain A, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|B Chain B, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|C Chain C, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|D Chain D, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|E Chain E, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|F Chain F, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|G Chain G, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|H Chain H, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|I Chain I, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|J Chain J, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|K Chain K, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|L Chain L, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|M Chain M, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|N Chain N, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|O Chain O, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|P Chain P, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF6|A Chain A, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|B Chain B, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|C Chain C, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|D Chain D, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|E Chain E, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|F Chain F, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|G Chain G, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|H Chain H, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|I Chain I, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|J Chain J, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|K Chain K, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|L Chain L, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|M Chain M, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|N Chain N, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|O Chain O, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|P Chain P, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NFV|A Chain A, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|B Chain B, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|C Chain C, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|D Chain D, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|E Chain E, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|F Chain F, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|G Chain G, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|H Chain H, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|I Chain I, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|J Chain J, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|K Chain K, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|L Chain L, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|M Chain M, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|N Chain N, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|O Chain O, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|P Chain P, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
Length = 179
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 34 ETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQ 88
E KV T + VP++ E + + E FL + GD T +LF+ I+ E+
Sbjct: 79 EGKVVTG-QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEE 132
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|4ABS|C Chain C, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
Length = 229
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 43
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a
Tthl1 In Complex With 80nt 23s Rna From Thermus
Thermophilus
Length = 228
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 42
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules
Are In The File 1gix
pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|C Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 228
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ YR L D K++T D+ LV+E+ +E E
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVE 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,178,125
Number of Sequences: 62578
Number of extensions: 118285
Number of successful extensions: 317
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 23
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)