BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5544
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D1Q6|ERP44_MOUSE Endoplasmic reticulum resident protein 44 OS=Mus musculus GN=Erp44
PE=1 SV=1
Length = 406
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 46/89 (51%), Positives = 62/89 (69%), Gaps = 3/89 (3%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLP 64
G+ +I P + P Y G+++ +D T W DKCVPLVREITFEN EELTEEGLP
Sbjct: 206 GDNVIYKPPGRSAP---DMVYLGSMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLP 262
Query: 65 FLILFYAPGDTETIKLFKSIVSEQLLGEK 93
FLILF+ DTE++++F++ V+ QL+ EK
Sbjct: 263 FLILFHMKDDTESLEIFQNEVARQLISEK 291
>sp|Q3T0L2|ERP44_BOVIN Endoplasmic reticulum resident protein 44 OS=Bos taurus GN=ERP44
PE=2 SV=1
Length = 406
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 24 TYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKS 83
Y G+++ +D T W DKCVPLVREITFEN EELTEEGLPFLILF+ DTE++++F++
Sbjct: 222 VYLGSMTNFDGTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQN 281
Query: 84 IVSEQLLGEK 93
V+ QL+ EK
Sbjct: 282 EVARQLISEK 291
>sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44
PE=1 SV=1
Length = 406
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLP 64
G+ II P + P Y G ++ +D T W DKCVPLVREITFEN EELTEEGLP
Sbjct: 206 GDNIIYKPPGHSAP---DMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLP 262
Query: 65 FLILFYAPGDTETIKLFKSIVSEQLLGEK 93
FLILF+ DTE++++F++ V+ QL+ EK
Sbjct: 263 FLILFHMKEDTESLEIFQNEVARQLISEK 291
>sp|Q17688|TXNDL_CAEEL Thioredoxin domain-containing protein C06A6.5 OS=Caenorhabditis
elegans GN=C06A6.5 PE=1 SV=2
Length = 413
Score = 82.0 bits (201), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 11 FRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFY 70
F PD E + GN + YD K W DKC+PLVRE+TFEN EELTEEG+PFLI F
Sbjct: 205 FDPDSN----EEAKFTGNFNDYDFVKQWVTDKCIPLVREVTFENVEELTEEGMPFLIYFR 260
Query: 71 APGDTETIKLFKSIVSEQLLGEK 93
P + T K+F V+ +L ++
Sbjct: 261 DPDNKTTDKVFGEAVARELYDQR 283
>sp|P20783|NTF3_HUMAN Neurotrophin-3 OS=Homo sapiens GN=NTF3 PE=1 SV=1
Length = 257
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADK 42
G P++ R EH+++RG S D +W DK
Sbjct: 125 GSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDK 162
>sp|P42307|YXIP_BACSU Uncharacterized protein YxiP OS=Bacillus subtilis (strain 168)
GN=yxiP PE=4 SV=1
Length = 226
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 39 TADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQ 88
TAD + L+ ++T +NA++ T + L L Y E+IK+ SIV +Q
Sbjct: 150 TADSMIKLINQVTPKNAKK-TRQQLDQLKKQYTQYSAESIKIMNSIVKKQ 198
>sp|Q9FDL5|PUR2_ZYMMO Phosphoribosylamine--glycine ligase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=purD PE=3
SV=2
Length = 417
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 27 GNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYA 71
G + AY TAD +++EI + + E+G+PF+ + YA
Sbjct: 225 GGMGAYSPATRLTADLEKRVMQEIVTPTVQAMKEQGMPFVGILYA 269
>sp|Q08DT3|NTF3_BOVIN Neurotrophin-3 OS=Bos taurus GN=NTF3 PE=2 SV=1
Length = 253
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADK 42
G P+ R EH+++RG S D +W DK
Sbjct: 121 GSPVAANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDK 158
>sp|Q9TST2|NTF3_FELCA Neurotrophin-3 OS=Felis catus GN=NTF3 PE=3 SV=1
Length = 257
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADK 42
G P+ R EH+++RG S D +W DK
Sbjct: 125 GSPVAANRTSRRKRYAEHKSHRGEYSLCDSESLWVTDK 162
>sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens
GN=COG3 PE=1 SV=3
Length = 828
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 12 RPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYA 71
RPD T PL + +T + E K A + +P+ E+ E+ LT + LP +
Sbjct: 28 RPDTTAPLTDRQT-----DSVLELK--AAAENLPVPAELPIEDLCSLTSQSLPIELTSVV 80
Query: 72 PGDTETIKL--FKSIVSEQ 88
P TE I L F S+ E+
Sbjct: 81 PESTEDILLKGFTSLGMEE 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,943,573
Number of Sequences: 539616
Number of extensions: 1475527
Number of successful extensions: 3285
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3275
Number of HSP's gapped (non-prelim): 15
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)