Query psy5544
Match_columns 96
No_of_seqs 71 out of 73
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:15:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0912|consensus 100.0 4.8E-41 1E-45 271.3 7.7 91 1-94 169-259 (375)
2 PF13848 Thioredoxin_6: Thiore 99.0 5.9E-09 1.3E-13 72.1 9.1 79 4-87 40-119 (184)
3 cd03072 PDI_b'_ERp44 PDIb' fam 98.8 9.5E-09 2.1E-13 70.2 4.1 48 47-94 1-48 (111)
4 PTZ00102 disulphide isomerase; 98.4 1.2E-06 2.6E-11 69.6 7.6 79 6-90 199-277 (477)
5 TIGR01130 ER_PDI_fam protein d 98.3 3.9E-06 8.5E-11 65.4 8.1 67 6-75 179-246 (462)
6 cd03070 PDI_b_ERp44 PDIb famil 98.2 1.2E-06 2.5E-11 59.7 3.2 33 1-36 59-91 (91)
7 cd03069 PDI_b_ERp57 PDIb famil 95.4 0.018 3.9E-07 38.3 3.2 37 5-42 65-103 (104)
8 TIGR01130 ER_PDI_fam protein d 95.4 0.1 2.3E-06 40.8 7.7 75 8-87 79-154 (462)
9 cd02981 PDI_b_family Protein D 93.5 0.12 2.6E-06 32.6 3.5 33 4-41 64-96 (97)
10 PTZ00102 disulphide isomerase; 88.8 2.6 5.6E-05 33.7 7.4 72 8-86 110-182 (477)
11 cd02996 PDI_a_ERp44 PDIa famil 88.5 0.42 9.1E-06 30.9 2.4 31 47-77 3-33 (108)
12 cd02982 PDI_b'_family Protein 88.0 1.1 2.3E-05 28.3 3.9 36 51-89 4-41 (103)
13 cd03068 PDI_b_ERp72 PDIb famil 84.7 1 2.2E-05 30.4 2.7 38 4-41 66-106 (107)
14 cd02997 PDI_a_PDIR PDIa family 81.8 2.4 5.3E-05 26.3 3.4 33 47-79 2-34 (104)
15 cd02995 PDI_a_PDI_a'_C PDIa fa 80.6 3.1 6.8E-05 25.7 3.6 32 47-78 2-34 (104)
16 cd03003 PDI_a_ERdj5_N PDIa fam 80.4 1.8 3.9E-05 27.5 2.5 33 45-77 1-33 (101)
17 cd03005 PDI_a_ERp46 PDIa famil 79.6 1.7 3.8E-05 27.0 2.2 31 47-78 2-32 (102)
18 cd03002 PDI_a_MPD1_like PDI fa 75.1 3.2 6.9E-05 26.3 2.5 32 47-78 2-34 (109)
19 KOG0190|consensus 74.6 6.4 0.00014 34.1 4.9 61 23-84 216-280 (493)
20 cd02993 PDI_a_APS_reductase PD 74.0 3 6.4E-05 27.2 2.2 31 47-77 3-36 (109)
21 cd03004 PDI_a_ERdj5_C PDIa fam 73.7 3.3 7.1E-05 26.3 2.3 33 45-77 1-34 (104)
22 COG3892 Uncharacterized protei 73.6 4.1 8.9E-05 33.4 3.3 44 25-90 117-160 (310)
23 cd03066 PDI_b_Calsequestrin_mi 73.6 6.4 0.00014 25.7 3.7 20 23-42 81-100 (102)
24 cd03001 PDI_a_P5 PDIa family, 73.1 5.6 0.00012 24.7 3.3 32 47-78 2-34 (103)
25 cd02961 PDI_a_family Protein D 71.9 6.8 0.00015 23.4 3.3 31 49-79 2-32 (101)
26 PF00085 Thioredoxin: Thioredo 68.7 20 0.00043 21.9 5.0 33 47-79 1-34 (103)
27 cd03004 PDI_a_ERdj5_C PDIa fam 66.4 8 0.00017 24.4 2.9 28 8-39 77-104 (104)
28 cd02998 PDI_a_ERp38 PDIa famil 64.9 23 0.0005 21.7 4.8 32 47-78 2-34 (105)
29 PTZ00051 thioredoxin; Provisio 64.5 10 0.00022 23.5 3.1 35 46-80 1-36 (98)
30 cd02957 Phd_like Phosducin (Ph 63.8 7.5 0.00016 25.5 2.5 32 47-78 6-40 (113)
31 TIGR01126 pdi_dom protein disu 54.0 11 0.00024 23.0 1.9 28 52-79 3-30 (102)
32 TIGR02263 benz_CoA_red_C benzo 52.5 21 0.00046 29.0 3.8 32 56-88 345-376 (380)
33 cd02963 TRX_DnaJ TRX domain, D 52.1 11 0.00025 24.7 1.8 29 50-78 9-40 (111)
34 smart00594 UAS UAS domain. 50.5 28 0.00062 23.4 3.6 34 45-78 9-43 (122)
35 PRK10996 thioredoxin 2; Provis 50.3 13 0.00029 25.6 2.0 32 47-78 37-68 (139)
36 COG3538 Uncharacterized conser 47.8 29 0.00064 29.8 4.0 52 34-89 25-95 (434)
37 cd03006 PDI_a_EFP1_N PDIa fami 46.3 14 0.00031 25.1 1.6 32 47-78 11-45 (113)
38 cd02953 DsbDgamma DsbD gamma f 45.0 18 0.00038 22.9 1.9 27 55-81 4-30 (104)
39 PLN02309 5'-adenylylsulfate re 44.6 17 0.00037 30.9 2.2 40 45-84 345-390 (457)
40 TIGR01068 thioredoxin thioredo 43.5 46 0.00099 20.0 3.5 21 58-78 10-30 (101)
41 PF03354 Terminase_1: Phage Te 42.7 49 0.0011 27.5 4.5 61 26-86 347-419 (477)
42 cd02947 TRX_family TRX family; 42.5 66 0.0014 18.4 4.4 30 56-86 4-33 (93)
43 PF06676 DUF1178: Protein of u 39.2 13 0.00028 27.4 0.6 25 49-73 121-145 (148)
44 KOG0191|consensus 37.6 59 0.0013 26.0 4.2 63 7-75 104-175 (383)
45 PF13098 Thioredoxin_2: Thiore 37.0 28 0.0006 22.0 1.8 19 60-78 3-21 (112)
46 PF02677 DUF208: Uncharacteriz 35.7 32 0.0007 26.0 2.3 27 55-82 15-41 (176)
47 cd02992 PDI_a_QSOX PDIa family 34.3 40 0.00087 22.3 2.4 30 47-76 3-33 (114)
48 cd03071 PDI_b'_NRX PDIb' famil 34.2 54 0.0012 23.7 3.1 35 49-85 3-37 (116)
49 cd03073 PDI_b'_ERp72_ERp57 PDI 33.2 1E+02 0.0022 20.8 4.3 23 47-71 1-23 (111)
50 cd02989 Phd_like_TxnDC9 Phosdu 32.8 1.3E+02 0.0029 19.9 4.7 32 47-78 6-38 (113)
51 COG2411 Uncharacterized conser 31.3 14 0.00031 28.6 -0.3 23 39-61 55-85 (188)
52 PF12045 DUF3528: Protein of u 31.1 20 0.00043 26.7 0.5 10 44-53 29-38 (143)
53 PRK09381 trxA thioredoxin; Pro 30.6 56 0.0012 20.7 2.5 32 47-78 5-37 (109)
54 TIGR00424 APS_reduc 5'-adenyly 30.6 43 0.00093 28.6 2.4 32 46-77 352-386 (463)
55 cd06232 Peptidase_M14-like_5 P 30.3 67 0.0014 25.6 3.3 26 65-90 170-195 (240)
56 PF01216 Calsequestrin: Calseq 30.1 1.7E+02 0.0037 25.0 5.8 69 6-86 114-189 (383)
57 cd02948 TRX_NDPK TRX domain, T 30.0 38 0.00083 21.7 1.6 27 52-78 7-33 (102)
58 PF13899 Thioredoxin_7: Thiore 29.7 45 0.00099 20.5 1.9 22 56-77 11-32 (82)
59 cd02949 TRX_NTR TRX domain, no 28.1 56 0.0012 20.5 2.2 24 55-78 6-29 (97)
60 cd02956 ybbN ybbN protein fami 27.5 58 0.0013 20.0 2.1 22 57-78 6-28 (96)
61 cd04395 RhoGAP_ARHGAP21 RhoGAP 27.2 31 0.00068 25.2 1.0 44 42-88 16-59 (196)
62 TIGR02187 GlrX_arch Glutaredox 27.1 1.4E+02 0.003 21.9 4.4 63 8-75 81-146 (215)
63 TIGR01295 PedC_BrcD bacterioci 26.7 54 0.0012 22.3 2.0 40 47-86 8-50 (122)
64 cd02994 PDI_a_TMX PDIa family, 26.7 70 0.0015 19.9 2.4 29 47-77 3-31 (101)
65 cd02958 UAS UAS family; UAS is 26.3 1.1E+02 0.0024 19.8 3.4 21 57-77 12-32 (114)
66 smart00021 DAX Domain present 26.0 46 0.001 22.5 1.5 30 59-88 11-40 (83)
67 PF09494 Slx4: Slx4 endonuclea 25.6 58 0.0013 20.1 1.8 14 31-44 46-59 (64)
68 KOG0086|consensus 25.4 35 0.00077 26.5 1.0 36 28-63 93-145 (214)
69 PRK10377 PTS system glucitol/s 25.2 45 0.00097 23.6 1.4 21 53-75 14-36 (120)
70 PF02844 GARS_N: Phosphoribosy 24.6 1E+02 0.0022 21.2 3.1 25 23-47 42-66 (100)
71 cd06402 PB1_p62 The PB1 domain 24.2 90 0.0019 21.0 2.7 21 27-48 24-44 (87)
72 cd02965 HyaE HyaE family; HyaE 24.2 99 0.0021 21.5 3.0 25 49-73 14-38 (111)
73 cd03066 PDI_b_Calsequestrin_mi 24.1 1.8E+02 0.0038 18.7 4.0 40 47-86 2-43 (102)
74 cd02951 SoxW SoxW family; SoxW 23.5 67 0.0015 21.0 2.0 23 55-77 6-29 (125)
75 PF14875 PIP49_N: N-term cyste 23.3 52 0.0011 24.3 1.5 62 21-94 83-144 (158)
76 cd07379 MPP_239FB Homo sapiens 22.9 2.4E+02 0.0051 18.7 4.9 50 23-73 23-78 (135)
77 cd02960 AGR Anterior Gradient 22.9 55 0.0012 23.4 1.5 23 51-73 11-34 (130)
78 PF11303 DUF3105: Protein of u 22.8 1.2E+02 0.0025 21.7 3.2 34 52-87 40-74 (130)
79 PTZ00443 Thioredoxin domain-co 22.8 70 0.0015 24.5 2.2 32 46-77 31-67 (224)
80 COG4199 Uncharacterized protei 22.8 52 0.0011 25.8 1.4 15 28-42 184-198 (201)
81 cd07244 FosA FosA, a Fosfomyci 22.3 1.1E+02 0.0024 19.5 2.8 36 30-75 68-103 (121)
82 PF12652 CotJB: CotJB protein; 21.8 97 0.0021 20.4 2.4 21 67-87 21-41 (78)
83 COG3403 Uncharacterized conser 21.5 83 0.0018 25.4 2.4 57 23-91 56-117 (257)
84 cd00405 PRAI Phosphoribosylant 20.9 89 0.0019 22.6 2.3 55 27-83 138-201 (203)
85 cd02952 TRP14_like Human TRX-r 20.8 74 0.0016 22.1 1.8 17 55-71 12-30 (119)
86 cd02991 UAS_ETEA UAS family, E 20.5 73 0.0016 21.7 1.7 18 57-74 12-29 (116)
87 PRK06552 keto-hydroxyglutarate 20.3 1.6E+02 0.0035 22.3 3.7 53 32-84 4-61 (213)
88 TIGR00849 gutA PTS system, glu 20.3 64 0.0014 22.9 1.4 21 53-75 14-36 (121)
89 cd03000 PDI_a_TMX3 PDIa family 20.1 85 0.0018 19.8 1.9 25 53-78 7-31 (104)
90 cd00894 PI3Kc_IB_gamma Phospho 20.0 1.5E+02 0.0032 24.8 3.7 41 39-81 76-116 (365)
No 1
>KOG0912|consensus
Probab=100.00 E-value=4.8e-41 Score=271.29 Aligned_cols=91 Identities=55% Similarity=0.966 Sum_probs=85.6
Q ss_pred CCCCCCCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHH
Q psy5544 1 MHPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKL 80 (96)
Q Consensus 1 ~~~~g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~ 80 (96)
++++|.++++|+|+.+.. .+.|+|||+||+++++||++|||||||||||||||||||||||||||||+|||++|+|.
T Consensus 169 ~~~~~~~~~~f~pd~~~~---~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~ 245 (375)
T KOG0912|consen 169 HEPPGKNILVFDPDHSEP---NHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKKDDKESEKI 245 (375)
T ss_pred CCCCCCceEEeCCCcCCc---CcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHH
Confidence 478899999999987443 46999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc
Q psy5544 81 FKSIVSEQLLGEKH 94 (96)
Q Consensus 81 F~~~V~~~L~~~k~ 94 (96)
|+++|+|||.++++
T Consensus 246 F~~aI~ReL~~e~~ 259 (375)
T KOG0912|consen 246 FKNAIARELDDETL 259 (375)
T ss_pred HHHHHHHHhhhhhh
Confidence 99999999999886
No 2
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.97 E-value=5.9e-09 Score=72.12 Aligned_cols=79 Identities=29% Similarity=0.398 Sum_probs=63.1
Q ss_pred CCCCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCc-eEEEeeCCCChhHHHHHH
Q psy5544 4 PGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLP-FLILFYAPGDTETIKLFK 82 (96)
Q Consensus 4 ~g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLP-fLILF~~pdD~~s~k~F~ 82 (96)
+...+++||+... ....|.|+..+.+.|..|+.....|+|.++|-+|+..+...++| .|+||.+++ .+..+.+.
T Consensus 40 ~~p~i~~~k~~~~----~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (184)
T PF13848_consen 40 KEPTIVVYKKFDE----KPVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKD-NESTEAFK 114 (184)
T ss_dssp SSSEEEEEECTTT----SEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTT-HHHHHHHH
T ss_pred CCCcEEEeccCCC----CceecccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCC-chhHHHHH
Confidence 3456888998432 23789999669999999999999999999999999999999998 777775554 55667777
Q ss_pred HHHHH
Q psy5544 83 SIVSE 87 (96)
Q Consensus 83 ~~V~~ 87 (96)
+.+..
T Consensus 115 ~~l~~ 119 (184)
T PF13848_consen 115 KELQD 119 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 3
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.76 E-value=9.5e-09 Score=70.19 Aligned_cols=48 Identities=69% Similarity=0.962 Sum_probs=45.2
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHHHhccccc
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQLLGEKH 94 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~~L~~~k~ 94 (96)
|||+|++|++.+.+.++|..+||++|++.++++.+...|.++|.+.||
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kg 48 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKG 48 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999877765
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=98.40 E-value=1.2e-06 Score=69.61 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=61.8
Q ss_pred CCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHHH
Q psy5544 6 EPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIV 85 (96)
Q Consensus 6 ~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V 85 (96)
.++.+||.+... -..|.|+ +.+.|.+|+..++.|+|+++|.+|...+.+.++|+++++++++|.+.++..-..|
T Consensus 199 ~~~~~~~~~~~~----~~~~~~~--~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (477)
T PTZ00102 199 NKIYVLHKDEEG----VELFMGK--TKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVVRKV 272 (477)
T ss_pred CcEEEEecCCCC----cccCCCC--CHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHHHHH
Confidence 345677764322 2335554 8899999999999999999999999999999999998898888877766665666
Q ss_pred HHHhc
Q psy5544 86 SEQLL 90 (96)
Q Consensus 86 ~~~L~ 90 (96)
.+.+.
T Consensus 273 A~~~~ 277 (477)
T PTZ00102 273 ARKLR 277 (477)
T ss_pred HHhcc
Confidence 66553
No 5
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.29 E-value=3.9e-06 Score=65.44 Aligned_cols=67 Identities=22% Similarity=0.545 Sum_probs=54.1
Q ss_pred CCeEEecCCCCCCCCcceeeecCCC-CHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCCh
Q psy5544 6 EPIIVFRPDVTTPLEEHETYRGNLS-AYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDT 75 (96)
Q Consensus 6 ~~~i~Fr~~~~~~~~~~~~f~G~~s-n~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~ 75 (96)
..+++|++..... ....|.|+.+ +.+.|..|+.+.+.|+|+++|.+|+..+.+.+ |+++||+..++.
T Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 246 (462)
T TIGR01130 179 DSVVLFKPKDEDE--KFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDES 246 (462)
T ss_pred CcEEEeccccccc--ccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCC
Confidence 3457788765332 2257889875 46899999999999999999999999999988 999999986643
No 6
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=98.21 E-value=1.2e-06 Score=59.69 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=27.5
Q ss_pred CCCCCCCeEEecCCCCCCCCcceeeecCCCCHHHHH
Q psy5544 1 MHPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETK 36 (96)
Q Consensus 1 ~~~~g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~ 36 (96)
++++|.++|+|||++ .+ ++++|+||+|||++|+
T Consensus 59 ~~~~~~~~i~frp~~-~~--~~~~y~G~~tn~~~l~ 91 (91)
T cd03070 59 ERPPGDNIIYFPPGH-NA--PDMVYLGSLTNFDLLK 91 (91)
T ss_pred ccCCCCCeEEECCCC-CC--CceEEccCCCChhhhC
Confidence 367889999999985 33 5699999999999874
No 7
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.44 E-value=0.018 Score=38.29 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=26.7
Q ss_pred CCCeEEecCCC--CCCCCcceeeecCCCCHHHHHHhhhhc
Q psy5544 5 GEPIIVFRPDV--TTPLEEHETYRGNLSAYDETKVWTADK 42 (96)
Q Consensus 5 g~~~i~Fr~~~--~~~~~~~~~f~G~~sn~~~l~~W~~~k 42 (96)
+.++++|||+. ..-++....|.|+++ .+.|..|+++.
T Consensus 65 ~~~ivl~~p~~~~~k~de~~~~y~g~~~-~~~l~~fi~~~ 103 (104)
T cd03069 65 GEGVVLFRPPRLSNKFEDSSVKFDGDLD-SSKIKKFIREN 103 (104)
T ss_pred CCceEEEechhhhcccCcccccccCcCC-HHHHHHHHHhh
Confidence 45689999974 111123467999986 89999999864
No 8
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.35 E-value=0.1 Score=40.79 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=56.9
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeee-ccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREIT-FENAEELTEEGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREIT-FeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
+++|+..... -..|.|.. +.+.+.+|+.+.--|-+.+|+ .++.+++.+..-+.+|+|....|....+.|.++..
T Consensus 79 ~~~~~~g~~~----~~~~~g~~-~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~ 153 (462)
T TIGR01130 79 LKIFRNGEDS----VSDYNGPR-DADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAE 153 (462)
T ss_pred EEEEeCCccc----eeEecCCC-CHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHH
Confidence 5677754321 26788986 679999999999999999996 88888877777777888777666677788877654
Q ss_pred H
Q psy5544 87 E 87 (96)
Q Consensus 87 ~ 87 (96)
.
T Consensus 154 ~ 154 (462)
T TIGR01130 154 K 154 (462)
T ss_pred H
Confidence 3
No 9
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=93.51 E-value=0.12 Score=32.62 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=25.3
Q ss_pred CCCCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhh
Q psy5544 4 PGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTAD 41 (96)
Q Consensus 4 ~g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~ 41 (96)
.+.++++|||... ....|.|+++ .+.|.+|+.+
T Consensus 64 ~~~~i~l~~~~~~----~~~~y~g~~~-~~~l~~fi~~ 96 (97)
T cd02981 64 KPGSVVLFKPFEE----EPVEYDGEFT-EESLVEFIKD 96 (97)
T ss_pred CCCceEEeCCccc----CCccCCCCCC-HHHHHHHHHh
Confidence 3456899999632 2367999987 8999999975
No 10
>PTZ00102 disulphide isomerase; Provisional
Probab=88.76 E-value=2.6 Score=33.68 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=50.2
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhh-hcCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELT-EEGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELt-EEgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
+++|+..+ . ..|.|.. +.+.+.+|+.+..-|-+++|+=....+.. ....+..+++....|....+.|.+++.
T Consensus 110 ~~~~~~g~--~----~~y~g~~-~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~ 182 (477)
T PTZ00102 110 IKFFNKGN--P----VNYSGGR-TADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVAD 182 (477)
T ss_pred EEEEECCc--e----EEecCCC-CHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHH
Confidence 67788643 2 3788985 78999999999999999999844332222 233345555555566788899987654
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=88.55 E-value=0.42 Score=30.92 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=27.1
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
|-|+|-+|-++...++.|.||.||.|--...
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C 33 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYADWCRFS 33 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECCCCHHH
Confidence 6689999999999999999999999876543
No 12
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=87.99 E-value=1.1 Score=28.26 Aligned_cols=36 Identities=39% Similarity=0.593 Sum_probs=23.1
Q ss_pred eccchhhhhhcCCceEEEeeCCCC--hhHHHHHHHHHHHHh
Q psy5544 51 TFENAEELTEEGLPFLILFYAPGD--TETIKLFKSIVSEQL 89 (96)
Q Consensus 51 TFeNaEELtEEgLPfLILF~~pdD--~~s~k~F~~~V~~~L 89 (96)
||.|.++. |.|.+++|+.+++ .+..+..-+.|.+++
T Consensus 4 ~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~ 41 (103)
T cd02982 4 TFFNYEES---GKPLLVLFYNKDDSESEELRERFKEVAKKF 41 (103)
T ss_pred HHhhhhhc---CCCEEEEEEcCChhhHHHHHHHHHHHHHHh
Confidence 55665555 8999999999877 334443334455444
No 13
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=84.74 E-value=1 Score=30.38 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=27.5
Q ss_pred CCCCeEEecCCCCCC--CCcceeeecC-CCCHHHHHHhhhh
Q psy5544 4 PGEPIIVFRPDVTTP--LEEHETYRGN-LSAYDETKVWTAD 41 (96)
Q Consensus 4 ~g~~~i~Fr~~~~~~--~~~~~~f~G~-~sn~~~l~~W~~~ 41 (96)
.+.++++|||+.-.. ++....|.|+ ++.=+.|..|+++
T Consensus 66 ~~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 66 SPGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CCCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 456789999996332 3355789988 6555669999976
No 14
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=81.82 E-value=2.4 Score=26.34 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=27.9
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
|.++|-.|-+++...+-|.+|+|+.|......+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~ 34 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKK 34 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHH
Confidence 668888888999999999999999998775543
No 15
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=80.64 E-value=3.1 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.5
Q ss_pred eeeeeccchhhhh-hcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELT-EEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELt-EEgLPfLILF~~pdD~~s~ 78 (96)
|.++|-+|-+.++ .+|.|.||+||.|......
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~ 34 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCK 34 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHH
Confidence 6789999998865 5579999999999887554
No 16
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=80.37 E-value=1.8 Score=27.48 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=27.6
Q ss_pred cceeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
|=|.++|-+|-++...++.|.||.||.|.-...
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C 33 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHC 33 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHH
Confidence 346788888999999999999999999987643
No 17
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=79.58 E-value=1.7 Score=27.02 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=25.8
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
|-++|.+|-++.+..| |.||.||.|--....
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~ 32 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCK 32 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHH
Confidence 5688999999999888 699999999776443
No 18
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=75.13 E-value=3.2 Score=26.27 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=25.7
Q ss_pred eeeeeccchhhhh-hcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELT-EEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELt-EEgLPfLILF~~pdD~~s~ 78 (96)
|.++|-+|.++.. +.|.|.|+.||.|.-....
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~ 34 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCK 34 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHH
Confidence 5688888888864 6699999999999876543
No 19
>KOG0190|consensus
Probab=74.62 E-value=6.4 Score=34.11 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=46.1
Q ss_pred eeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeC--C--CChhHHHHHHHH
Q psy5544 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYA--P--GDTETIKLFKSI 84 (96)
Q Consensus 23 ~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~--p--dD~~s~k~F~~~ 84 (96)
-.|.|++++ +.|..|++..-+|||-++|=+|+-.+...+++.=++|+. + +--...+.|.++
T Consensus 216 ~~~~~~~~~-~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v 280 (493)
T KOG0190|consen 216 VKYDGSFTP-ELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEV 280 (493)
T ss_pred hhcccccCH-HHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHH
Confidence 446788876 459999999999999999999999999998887666655 3 223444555443
No 20
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=74.05 E-value=3 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=25.6
Q ss_pred eeeeeccchhhhhh---cCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAEELTE---EGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaEELtE---EgLPfLILF~~pdD~~s 77 (96)
|-|||=+|.++++. .|.|.||.||.|.-...
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C 36 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFC 36 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHH
Confidence 56788889999985 68999999999986544
No 21
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=73.66 E-value=3.3 Score=26.26 Aligned_cols=33 Identities=36% Similarity=0.462 Sum_probs=26.2
Q ss_pred cceeeeeccchhhhh-hcCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAEELT-EEGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaEELt-EEgLPfLILF~~pdD~~s 77 (96)
|-|.+||-+|-+++. ..+-|.||.||.|.-...
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C 34 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPC 34 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHH
Confidence 457889988888864 557799999999877654
No 22
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.59 E-value=4.1 Score=33.45 Aligned_cols=44 Identities=18% Similarity=0.502 Sum_probs=34.7
Q ss_pred eecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHHHhc
Q psy5544 25 YRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQLL 90 (96)
Q Consensus 25 f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~~L~ 90 (96)
|+||+.+ .|..|=++.||- .+.||||||..+++.=++.--.+|.
T Consensus 117 ~~~diGs--~Lv~WP~ehvVK--------------------cL~FYHPdD~a~lr~~Qe~k~~~l~ 160 (310)
T COG3892 117 FSGDIGS--QLVEWPVEHVVK--------------------CLVFYHPDDPAELRAEQEQKLLELF 160 (310)
T ss_pred cccchhh--HHhcCcHhhhee--------------------eeeecCCCCHHHHHHHHHHHHHHHH
Confidence 7888876 899999999985 4589999999999876655444443
No 23
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=73.58 E-value=6.4 Score=25.69 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=15.0
Q ss_pred eeeecCCCCHHHHHHhhhhc
Q psy5544 23 ETYRGNLSAYDETKVWTADK 42 (96)
Q Consensus 23 ~~f~G~~sn~~~l~~W~~~k 42 (96)
..|.|+..+.+.|.+|++..
T Consensus 81 ~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 81 VTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cccCCCCCCHHHHHHHHHHh
Confidence 56844456899999999753
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=73.11 E-value=5.6 Score=24.70 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=24.9
Q ss_pred eeeeeccchhhhh-hcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELT-EEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELt-EEgLPfLILF~~pdD~~s~ 78 (96)
|.|+|-+|-+++. +.+.|.|++||.|......
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~ 34 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCK 34 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHH
Confidence 5688888888765 6677799999998776443
No 25
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=71.93 E-value=6.8 Score=23.39 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=24.7
Q ss_pred eeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 49 EITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 49 EITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
+||-++-+.+..++-|.||+|+.+......+
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~ 32 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKA 32 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHh
Confidence 4667788888888889999999998755443
No 26
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=68.74 E-value=20 Score=21.85 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=27.2
Q ss_pred eeeeeccchhhhhhc-CCceEEEeeCCCChhHHH
Q psy5544 47 VREITFENAEELTEE-GLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREITFeNaEELtEE-gLPfLILF~~pdD~~s~k 79 (96)
|-++|=+|-++...+ +-|.||+||.|.......
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~ 34 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKA 34 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHH
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCcccc
Confidence 567888888888887 999999999998766554
No 27
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=66.41 E-value=8 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=20.9
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhh
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWT 39 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~ 39 (96)
+++|++.+.. -..|.|..++.++|.+|+
T Consensus 77 ~~~~~~g~~~----~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASK----YHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCC----ceEccCCCCCHHHHHhhC
Confidence 6778775333 367999887789999996
No 28
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=64.89 E-value=23 Score=21.72 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=24.3
Q ss_pred eeeeeccchhhhhh-cCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTE-EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtE-EgLPfLILF~~pdD~~s~ 78 (96)
|-+||-+|-++++. .|.|.+++|+.+-.....
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~ 34 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCK 34 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHH
Confidence 34677777777776 566999999998887554
No 29
>PTZ00051 thioredoxin; Provisional
Probab=64.51 E-value=10 Score=23.50 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=26.6
Q ss_pred ceeeeec-cchhhhhhcCCceEEEeeCCCChhHHHH
Q psy5544 46 LVREITF-ENAEELTEEGLPFLILFYAPGDTETIKL 80 (96)
Q Consensus 46 LVREITF-eNaEELtEEgLPfLILF~~pdD~~s~k~ 80 (96)
+|+||+= ++.+++.+++-|.||.||.+......+.
T Consensus 1 ~v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~ 36 (98)
T PTZ00051 1 MVHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRI 36 (98)
T ss_pred CeEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHH
Confidence 4666663 4667788899999999999988766543
No 30
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=63.84 E-value=7.5 Score=25.54 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=23.7
Q ss_pred eeeeeccchhhhhhcC---CceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTEEG---LPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtEEg---LPfLILF~~pdD~~s~ 78 (96)
|++||=+|-.+.+.+. .|.++.||.|......
T Consensus 6 v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~ 40 (113)
T cd02957 6 VREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCK 40 (113)
T ss_pred EEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHH
Confidence 6778777776665544 8999999999885443
No 31
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=54.01 E-value=11 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=21.4
Q ss_pred ccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 52 FENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 52 FeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
-+|-+++...|.|.+|+|+.+.-...-+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~ 30 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKN 30 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHh
Confidence 3455566668999999999998877643
No 32
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=52.51 E-value=21 Score=28.96 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=27.2
Q ss_pred hhhhhcCCceEEEeeCCCChhHHHHHHHHHHHH
Q psy5544 56 EELTEEGLPFLILFYAPGDTETIKLFKSIVSEQ 88 (96)
Q Consensus 56 EELtEEgLPfLILF~~pdD~~s~k~F~~~V~~~ 88 (96)
+.|.|.|+|+|.|=|.. |...+++++..|++=
T Consensus 345 ~~l~e~GIP~L~id~~~-~~~~~~q~~t~~~~f 376 (380)
T TIGR02263 345 ARCKEHGIPQIAFKYAE-NSGQMQPIREQAGTF 376 (380)
T ss_pred HHHHHCCCCEEEEEecC-ccchHHHHHHHHHHH
Confidence 56788999999997775 999999999888763
No 33
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=52.09 E-value=11 Score=24.72 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=20.8
Q ss_pred eeccchhh-hhh--cCCceEEEeeCCCChhHH
Q psy5544 50 ITFENAEE-LTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 50 ITFeNaEE-LtE--EgLPfLILF~~pdD~~s~ 78 (96)
+|.++-++ +.+ .|.|.||.||.|.-....
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~ 40 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCI 40 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHH
Confidence 45666654 333 689999999999876554
No 34
>smart00594 UAS UAS domain.
Probab=50.48 E-value=28 Score=23.35 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=25.2
Q ss_pred cceeeeeccch-hhhhhcCCceEEEeeCCCChhHH
Q psy5544 45 PLVREITFENA-EELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 45 PLVREITFeNa-EELtEEgLPfLILF~~pdD~~s~ 78 (96)
|+.-.-+|+.| ++-..+|.+.+|.||.++...+.
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~ 43 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQ 43 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHH
Confidence 55556677777 56678899999999998765443
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=50.30 E-value=13 Score=25.60 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=26.9
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
|-++|-+|.+++..+|.|.+|.||.+......
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~ 68 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCR 68 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHH
Confidence 44678888888999999999999999877654
No 36
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=47.80 E-value=29 Score=29.79 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=41.0
Q ss_pred HHHHhhhhccccceeeeeccchhhhhhcCCceEE-------------------EeeCCCChhHHHHHHHHHHHHh
Q psy5544 34 ETKVWTADKCVPLVREITFENAEELTEEGLPFLI-------------------LFYAPGDTETIKLFKSIVSEQL 89 (96)
Q Consensus 34 ~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLI-------------------LF~~pdD~~s~k~F~~~V~~~L 89 (96)
.=.+|+.++|.|=.-+-|-. .+|+|+||+| |.-.++|-+.-+.+.-.|++|.
T Consensus 25 ~ela~~Fe~c~~NTldTTi~----~~e~g~~FvlTGDIPAmWLRDStaQvrPYL~lAkeD~~l~~li~GlvkrQ~ 95 (434)
T COG3538 25 PELARLFENCFTNTLDTTIR----TTEDGTPFVLTGDIPAMWLRDSTAQVRPYLPLAKEDEELRRLIAGLVKRQA 95 (434)
T ss_pred HHHHHHHHHhcccchhheee----eccCCCeEEEecCchHHHHhcchhhhccceeecccCHHHHHHHHHHHHHHH
Confidence 34578999999976555554 3999999997 6777888888888888888874
No 37
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=46.26 E-value=14 Score=25.12 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=22.6
Q ss_pred eeeeeccchhh---hhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEE---LTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEE---LtEEgLPfLILF~~pdD~~s~ 78 (96)
|-++|=+|-++ ...++.+.|+.||.|-.-.+-
T Consensus 11 v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck 45 (113)
T cd03006 11 VLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQ 45 (113)
T ss_pred eEEechhhhHHHHhcccCCCEEEEEEECCCCHHHH
Confidence 33555455444 468999999999999776553
No 38
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=44.99 E-value=18 Score=22.94 Aligned_cols=27 Identities=15% Similarity=0.018 Sum_probs=21.4
Q ss_pred hhhhhhcCCceEEEeeCCCChhHHHHH
Q psy5544 55 AEELTEEGLPFLILFYAPGDTETIKLF 81 (96)
Q Consensus 55 aEELtEEgLPfLILF~~pdD~~s~k~F 81 (96)
.++...+|.|.||.|+.+.-....+.-
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~ 30 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNE 30 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHH
Confidence 456678999999999999887776543
No 39
>PLN02309 5'-adenylylsulfate reductase
Probab=44.59 E-value=17 Score=30.93 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=29.8
Q ss_pred cceeeeeccchhhhh---hcCCceEEEeeCCCChhH---HHHHHHH
Q psy5544 45 PLVREITFENAEELT---EEGLPFLILFYAPGDTET---IKLFKSI 84 (96)
Q Consensus 45 PLVREITFeNaEELt---EEgLPfLILF~~pdD~~s---~k~F~~~ 84 (96)
+-|.++|.+|-+++. ..|.|.||.||.|--... ...|.++
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~L 390 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEEL 390 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHH
Confidence 357788899988886 589999999999976544 3355443
No 40
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=43.52 E-value=46 Score=20.02 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=15.9
Q ss_pred hhhcCCceEEEeeCCCChhHH
Q psy5544 58 LTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 58 LtEEgLPfLILF~~pdD~~s~ 78 (96)
+.+++.|.+|.||.+......
T Consensus 10 ~~~~~~~vvi~f~~~~C~~C~ 30 (101)
T TIGR01068 10 IASSDKPVLVDFWAPWCGPCK 30 (101)
T ss_pred HhhcCCcEEEEEECCCCHHHH
Confidence 445577999999999875443
No 41
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.65 E-value=49 Score=27.45 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=44.1
Q ss_pred ecCCCCHHHHHHhhhhcccc---ceeeeeccc------hhhhhhcCC--ceEEEeeC-CCChhHHHHHHHHHH
Q psy5544 26 RGNLSAYDETKVWTADKCVP---LVREITFEN------AEELTEEGL--PFLILFYA-PGDTETIKLFKSIVS 86 (96)
Q Consensus 26 ~G~~sn~~~l~~W~~~kCvP---LVREITFeN------aEELtEEgL--PfLILF~~-pdD~~s~k~F~~~V~ 86 (96)
.|+..||+.+..|+.+-|-= -|++|-|+. +++|.++|. |++-.--. ..=..++|.|.+.|.
T Consensus 347 ~g~~iD~~~v~~~i~~~~~~~~~~v~~i~yD~~~a~~~~~~l~~~g~~~~~~~v~Q~~~~ls~~~k~le~~~~ 419 (477)
T PF03354_consen 347 PGNVIDYDEVEEWIIELIDKYGFDVQEIGYDPWNATQFVQRLEEEGFDYPMVEVRQGFKTLSPPTKELERLVL 419 (477)
T ss_pred CCCcccHHHHHHHHHHHHHhcCcCccEEEEehhhhHHHHHHHHhccCcceEEEecccccccCchHHHHHHhhh
Confidence 49999999999999987764 799999986 578899998 44433333 233456666665554
No 42
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=42.54 E-value=66 Score=18.39 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=20.0
Q ss_pred hhhhhcCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 56 EELTEEGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 56 EELtEEgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
+....++.|+|++|+.+...... .+...+.
T Consensus 4 ~~~~~~~~~~ll~~~~~~C~~C~-~~~~~~~ 33 (93)
T cd02947 4 EELIKSAKPVVVDFWAPWCGPCK-AIAPVLE 33 (93)
T ss_pred HHHHhcCCcEEEEEECCCChhHH-HhhHHHH
Confidence 34445558999999999877664 4434443
No 43
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=39.22 E-value=13 Score=27.44 Aligned_cols=25 Identities=48% Similarity=0.620 Sum_probs=19.6
Q ss_pred eeeccchhhhhhcCCceEEEeeCCC
Q psy5544 49 EITFENAEELTEEGLPFLILFYAPG 73 (96)
Q Consensus 49 EITFeNaEELtEEgLPfLILF~~pd 73 (96)
+-|-+-+++|.|||.|++-|=--|+
T Consensus 121 ~at~eE~~~L~eEGI~v~pLP~~~~ 145 (148)
T PF06676_consen 121 EATPEEAKELIEEGIEVLPLPWPPD 145 (148)
T ss_pred cCCHHHHHHHHHcCCeEeecCCCCc
Confidence 5578889999999999998843333
No 44
>KOG0191|consensus
Probab=37.55 E-value=59 Score=25.97 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=45.9
Q ss_pred CeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCc---------eEEEeeCCCCh
Q psy5544 7 PIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLP---------FLILFYAPGDT 75 (96)
Q Consensus 7 ~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLP---------fLILF~~pdD~ 75 (96)
.+.+|+++ . .-..|.| ..|.+.+..|...+--+.|+.....+..+|+..... .|+-||.|-=.
T Consensus 104 tl~~f~~~-~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~ 175 (383)
T KOG0191|consen 104 TLKVFRPG-K----KPIDYSG-PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCG 175 (383)
T ss_pred EEEEEcCC-C----ceeeccC-cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccH
Confidence 36788887 2 2367888 689999999998887777777777755555555553 68889988554
No 45
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=36.97 E-value=28 Score=22.04 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=13.3
Q ss_pred hcCCceEEEeeCCCChhHH
Q psy5544 60 EEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 60 EEgLPfLILF~~pdD~~s~ 78 (96)
.+|.|.+++|++|+=--=.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~ 21 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCK 21 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHH
T ss_pred CCCCEEEEEEECCCCHHHH
Confidence 5799999999998854433
No 46
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=35.67 E-value=32 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=20.6
Q ss_pred hhhhhhcCCceEEEeeCCCChhHHHHHH
Q psy5544 55 AEELTEEGLPFLILFYAPGDTETIKLFK 82 (96)
Q Consensus 55 aEELtEEgLPfLILF~~pdD~~s~k~F~ 82 (96)
.+.|.++|--..++||||+ ..+...|.
T Consensus 15 ~~~L~~~g~~vt~~fyNPN-IhP~~Ey~ 41 (176)
T PF02677_consen 15 LERLREEGFDVTGYFYNPN-IHPYEEYE 41 (176)
T ss_pred HHHHHHCCCCeEEEEeCCC-CCcHHHHH
Confidence 3689999999999999997 34444443
No 47
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=34.30 E-value=40 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=22.0
Q ss_pred eeeeeccchhhhhhc-CCceEEEeeCCCChh
Q psy5544 47 VREITFENAEELTEE-GLPFLILFYAPGDTE 76 (96)
Q Consensus 47 VREITFeNaEELtEE-gLPfLILF~~pdD~~ 76 (96)
|-+++-+|-++.+.+ +.|.+|.||.|-...
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~ 33 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGH 33 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHH
Confidence 456777777777555 469999999997653
No 48
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=34.17 E-value=54 Score=23.68 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=23.7
Q ss_pred eeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHHH
Q psy5544 49 EITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIV 85 (96)
Q Consensus 49 EITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V 85 (96)
++|=.||-.|.++ |+||||-+.+|...++.=++.+
T Consensus 3 ~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~ll 37 (116)
T cd03071 3 ELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLI 37 (116)
T ss_pred cccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHH
Confidence 3444566666665 8999999999986555444433
No 49
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=33.18 E-value=1e+02 Score=20.79 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=16.9
Q ss_pred eeeeeccchhhhhhcCCceEEEeeC
Q psy5544 47 VREITFENAEELTEEGLPFLILFYA 71 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~ 71 (96)
|-|+|=+|+.-.+ ..|++++|++
T Consensus 1 v~~~~~en~~~~~--~~~l~~~~~~ 23 (111)
T cd03073 1 VGHRTKDNRAQFT--KKPLVVAYYN 23 (111)
T ss_pred CCeeccchHHHhc--cCCeEEEEEe
Confidence 4478889999997 5566777763
No 50
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=32.81 E-value=1.3e+02 Score=19.86 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=21.9
Q ss_pred eeeeec-cchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITF-ENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITF-eNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
|.+|+= ++.++...++-|.++.||.|..-...
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~ 38 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCK 38 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHH
Confidence 344444 45556666677999999998876543
No 51
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=14 Score=28.56 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=17.0
Q ss_pred hhhccccceeeee--------ccchhhhhhc
Q psy5544 39 TADKCVPLVREIT--------FENAEELTEE 61 (96)
Q Consensus 39 ~~~kCvPLVREIT--------FeNaEELtEE 61 (96)
|++--+-=|+|+| |.|+|||.++
T Consensus 55 Ik~V~~KrV~ELTdEDAr~DGF~sreELi~~ 85 (188)
T COG2411 55 IKKVKTKRVSELTDEDARLDGFRSREELIEE 85 (188)
T ss_pred EEEEEEeeHhhhhHHHHHhcccccHHHHHHH
Confidence 3444445688888 8999999986
No 52
>PF12045 DUF3528: Protein of unknown function (DUF3528); InterPro: IPR021918 This domain of unknown function is found at the N terminus of some Homeobox proteins belonging to the ABD-B family. It is found in association with PF00046 from PFAM.
Probab=31.08 E-value=20 Score=26.70 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=8.9
Q ss_pred ccceeeeecc
Q psy5544 44 VPLVREITFE 53 (96)
Q Consensus 44 vPLVREITFe 53 (96)
|+-|||++|-
T Consensus 29 VqpVREVaFR 38 (143)
T PF12045_consen 29 VQPVREVAFR 38 (143)
T ss_pred cCccceecch
Confidence 7899999994
No 53
>PRK09381 trxA thioredoxin; Provisional
Probab=30.62 E-value=56 Score=20.68 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=21.4
Q ss_pred eeeeeccchh-hhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAE-ELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaE-ELtEEgLPfLILF~~pdD~~s~ 78 (96)
|.+|+=++-+ ++++.+-|.+|.|+.|......
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~ 37 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCK 37 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHH
Confidence 4455544544 3566688999999999765443
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=30.58 E-value=43 Score=28.64 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.0
Q ss_pred ceeeeeccchhhhhh---cCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELTE---EGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELtE---EgLPfLILF~~pdD~~s 77 (96)
-|-++|-+|.+.+.. .+.|.||.||.|--...
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~C 386 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFC 386 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHH
Confidence 688999999999886 89999999999987554
No 55
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=30.34 E-value=67 Score=25.63 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.3
Q ss_pred eEEEeeCCCChhHHHHHHHHHHHHhc
Q psy5544 65 FLILFYAPGDTETIKLFKSIVSEQLL 90 (96)
Q Consensus 65 fLILF~~pdD~~s~k~F~~~V~~~L~ 90 (96)
||+|.|++|.......|.+.|...+.
T Consensus 170 ~lvl~~~~d~~~p~~~~q~av~~~v~ 195 (240)
T cd06232 170 FLILRHHAGWDEQARRLLELVTARLA 195 (240)
T ss_pred EEEEecCCCCcChHHHHHHHHHHHHH
Confidence 89999999999999999999877664
No 56
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=30.06 E-value=1.7e+02 Score=25.00 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=47.8
Q ss_pred CCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeee-------ccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 6 EPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREIT-------FENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 6 ~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREIT-------FeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
.+|-||+.+. -..|.|-+ +-+-|-.|+.+--=.-|-.|+ |+|+|+ -+=||-|-++++-+.-
T Consensus 114 ~SiyVfkd~~------~IEydG~~-saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied-----~~klIGyFk~~~s~~y 181 (383)
T PF01216_consen 114 GSIYVFKDGE------VIEYDGER-SADTLVEFLLDLLEDPVEIINNKHELKAFERIED-----DIKLIGYFKSEDSEHY 181 (383)
T ss_dssp TEEEEEETTE------EEEE-S---SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--S-----S-EEEEE-SSTTSHHH
T ss_pred CcEEEEECCc------EEEecCcc-CHHHHHHHHHHhcccchhhhcChhhhhhhhhccc-----ceeEEEEeCCCCcHHH
Confidence 3466777742 37799987 568999999998888887776 555554 3789999999999999
Q ss_pred HHHHHHHH
Q psy5544 79 KLFKSIVS 86 (96)
Q Consensus 79 k~F~~~V~ 86 (96)
|.|.++.+
T Consensus 182 k~FeeAAe 189 (383)
T PF01216_consen 182 KEFEEAAE 189 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 57
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=30.03 E-value=38 Score=21.69 Aligned_cols=27 Identities=19% Similarity=-0.047 Sum_probs=20.5
Q ss_pred ccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 52 FENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 52 FeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
-++-+.+...|.|.+|.||.+--...-
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck 33 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCK 33 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHH
Confidence 344556777899999999999876554
No 58
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=29.70 E-value=45 Score=20.52 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=16.3
Q ss_pred hhhhhcCCceEEEeeCCCChhH
Q psy5544 56 EELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 56 EELtEEgLPfLILF~~pdD~~s 77 (96)
++-.++|.|.||.|+...=...
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C 32 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPC 32 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHH
T ss_pred HHHHHcCCCEEEEEECCCCHhH
Confidence 3567899999999986654433
No 59
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=28.08 E-value=56 Score=20.50 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.6
Q ss_pred hhhhhhcCCceEEEeeCCCChhHH
Q psy5544 55 AEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 55 aEELtEEgLPfLILF~~pdD~~s~ 78 (96)
..+|.+.+.|.+++|+.+.-....
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~ 29 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCR 29 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHH
Confidence 357889999999999998876543
No 60
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=27.49 E-value=58 Score=19.98 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=16.6
Q ss_pred hhhhc-CCceEEEeeCCCChhHH
Q psy5544 57 ELTEE-GLPFLILFYAPGDTETI 78 (96)
Q Consensus 57 ELtEE-gLPfLILF~~pdD~~s~ 78 (96)
++.+. |.|.||.||.|.-....
T Consensus 6 ~i~~~~~~~vlv~f~a~wC~~C~ 28 (96)
T cd02956 6 VLQESTQVPVVVDFWAPRSPPSK 28 (96)
T ss_pred HHHhcCCCeEEEEEECCCChHHH
Confidence 45455 88999999999866554
No 61
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.22 E-value=31 Score=25.16 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=30.5
Q ss_pred ccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHHH
Q psy5544 42 KCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQ 88 (96)
Q Consensus 42 kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~~ 88 (96)
+.||.+-+..++--| +.|+-.-=+||.|++...+++.++.+.+.
T Consensus 16 ~~vP~iv~~~~~~l~---~~g~~~eGIFR~~g~~~~i~~l~~~l~~~ 59 (196)
T cd04395 16 PYVPLIVEVCCNIVE---ARGLETVGIYRVPGNNAAISALQEELNRG 59 (196)
T ss_pred CCCChHHHHHHHHHH---HcCCCCccceeCCCcHHHHHHHHHHHhcC
Confidence 678887666555333 33333344799999999999998887753
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=27.13 E-value=1.4e+02 Score=21.87 Aligned_cols=63 Identities=19% Similarity=0.097 Sum_probs=38.4
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhcc--ccceeeeeccchhhhhhcCCceEEE-eeCCCCh
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKC--VPLVREITFENAEELTEEGLPFLIL-FYAPGDT 75 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kC--vPLVREITFeNaEELtEEgLPfLIL-F~~pdD~ 75 (96)
+++|+... . ....|.|-. +-+++..|+...= -+-..++.=++.+.|.+..-|..|+ |+.|.-.
T Consensus 81 ~~~f~~g~-~---~~~~~~G~~-~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~ 146 (215)
T TIGR02187 81 TIILEEGK-D---GGIRYTGIP-AGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCP 146 (215)
T ss_pred EEEEeCCe-e---eEEEEeecC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCC
Confidence 46666532 1 124688854 4478888987661 1122345555567777767787666 8887554
No 63
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=26.73 E-value=54 Score=22.32 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=29.5
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCC---hhHHHHHHHHHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGD---TETIKLFKSIVS 86 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD---~~s~k~F~~~V~ 86 (96)
.-+||-+...++...|-++++.|+.|.= ..-...+.+++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~ 50 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVA 50 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHH
Confidence 3578999999999999999999998643 444445554444
No 64
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=26.67 E-value=70 Score=19.89 Aligned_cols=29 Identities=38% Similarity=0.415 Sum_probs=21.1
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
|-+||=+|-+++.+ |. .||.||.|--...
T Consensus 3 v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C 31 (101)
T cd02994 3 VVELTDSNWTLVLE-GE-WMIEFYAPWCPAC 31 (101)
T ss_pred eEEcChhhHHHHhC-CC-EEEEEECCCCHHH
Confidence 56777777788875 54 6799999876544
No 65
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=26.25 E-value=1.1e+02 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=16.4
Q ss_pred hhhhcCCceEEEeeCCCChhH
Q psy5544 57 ELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 57 ELtEEgLPfLILF~~pdD~~s 77 (96)
+-..++.|+||.||.++...+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c 32 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDS 32 (114)
T ss_pred HHHhhCceEEEEEecCCcchH
Confidence 345679999999999888544
No 66
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=26.03 E-value=46 Score=22.53 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=26.7
Q ss_pred hhcCCceEEEeeCCCChhHHHHHHHHHHHH
Q psy5544 59 TEEGLPFLILFYAPGDTETIKLFKSIVSEQ 88 (96)
Q Consensus 59 tEEgLPfLILF~~pdD~~s~k~F~~~V~~~ 88 (96)
-.|-.|.++.-+.|.+.-.+.+||+.+.+.
T Consensus 11 d~e~~PY~~~i~~~~~~iTLgdFK~~l~k~ 40 (83)
T smart00021 11 DDEETPYLVKVPVPAERVTLGDFKEVLTKK 40 (83)
T ss_pred CCCCCceeEecCCCcCceEHHHHHHhhccC
Confidence 467889999999999999999999988764
No 67
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=25.57 E-value=58 Score=20.12 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=7.3
Q ss_pred CHHHHHHhhhhccc
Q psy5544 31 AYDETKVWTADKCV 44 (96)
Q Consensus 31 n~~~l~~W~~~kCv 44 (96)
+-..|.+|...+||
T Consensus 46 ~~~~l~~~lD~~gI 59 (64)
T PF09494_consen 46 DPSKLKEWLDSQGI 59 (64)
T ss_pred CHHHHHHHHHHCCc
Confidence 44555555555554
No 68
>KOG0086|consensus
Probab=25.36 E-value=35 Score=26.53 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=27.7
Q ss_pred CCCCHHHHHHhhhhc--------cccce---------eeeeccchhhhhhcCC
Q psy5544 28 NLSAYDETKVWTADK--------CVPLV---------REITFENAEELTEEGL 63 (96)
Q Consensus 28 ~~sn~~~l~~W~~~k--------CvPLV---------REITFeNaEELtEEgL 63 (96)
+-.+|++|.+|+.|- ||-|+ ||+||.-|-+...|.-
T Consensus 93 srdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne 145 (214)
T KOG0086|consen 93 SRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE 145 (214)
T ss_pred chhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc
Confidence 345699999999874 55554 8999999988877764
No 69
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=25.16 E-value=45 Score=23.63 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=14.8
Q ss_pred cchhhhhhcCCceEEEeeC--CCCh
Q psy5544 53 ENAEELTEEGLPFLILFYA--PGDT 75 (96)
Q Consensus 53 eNaEELtEEgLPfLILF~~--pdD~ 75 (96)
++|++.-++ ++||||.. |+|+
T Consensus 14 ~~a~~f~~e--~mlIlF~e~Ap~~L 36 (120)
T PRK10377 14 ASATDALSD--QMLITFREGAPADI 36 (120)
T ss_pred hhHHhhccC--CEEEEeCCCCChHH
Confidence 457776666 69999987 4444
No 70
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=24.63 E-value=1e+02 Score=21.17 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=19.1
Q ss_pred eeeecCCCCHHHHHHhhhhccccce
Q psy5544 23 ETYRGNLSAYDETKVWTADKCVPLV 47 (96)
Q Consensus 23 ~~f~G~~sn~~~l~~W~~~kCvPLV 47 (96)
..+.-+.+|++.+..|++++-+-||
T Consensus 42 ~~~~~~~~d~~~l~~~a~~~~idlv 66 (100)
T PF02844_consen 42 KNVPIDITDPEELADFAKENKIDLV 66 (100)
T ss_dssp EEE-S-TT-HHHHHHHHHHTTESEE
T ss_pred eecCCCCCCHHHHHHHHHHcCCCEE
Confidence 4456699999999999999998877
No 71
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=24.16 E-value=90 Score=21.04 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.2
Q ss_pred cCCCCHHHHHHhhhhcccccee
Q psy5544 27 GNLSAYDETKVWTADKCVPLVR 48 (96)
Q Consensus 27 G~~sn~~~l~~W~~~kCvPLVR 48 (96)
+..++|+.|.+=+++.| |..+
T Consensus 24 ~~~~s~~~L~~~V~~~f-~~l~ 44 (87)
T cd06402 24 DVSTSYEYLVEKVAAVF-PSLR 44 (87)
T ss_pred CCCcCHHHHHHHHHHHc-cccC
Confidence 44478999999999999 6665
No 72
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.15 E-value=99 Score=21.46 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=20.1
Q ss_pred eeeccchhhhhhcCCceEEEeeCCC
Q psy5544 49 EITFENAEELTEEGLPFLILFYAPG 73 (96)
Q Consensus 49 EITFeNaEELtEEgLPfLILF~~pd 73 (96)
++|=.|-+|.++.|-+.+++||..-
T Consensus 14 ~~~~~~~~~~~~~~~~~v~~f~~~~ 38 (111)
T cd02965 14 RVDAATLDDWLAAGGDLVLLLAGDP 38 (111)
T ss_pred ccccccHHHHHhCCCCEEEEecCCc
Confidence 4556666688899999999999874
No 73
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=24.09 E-value=1.8e+02 Score=18.74 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=24.9
Q ss_pred eeee-eccchhhhhh-cCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 47 VREI-TFENAEELTE-EGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 47 VREI-TFeNaEELtE-EgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
|++| |=+.+|.+.+ +.-..+|-|-...+-...+.|.++..
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~ 43 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAE 43 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHH
Confidence 5666 5566888887 55444444444444477888977443
No 74
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=23.54 E-value=67 Score=20.96 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=18.5
Q ss_pred hhhhhhcC-CceEEEeeCCCChhH
Q psy5544 55 AEELTEEG-LPFLILFYAPGDTET 77 (96)
Q Consensus 55 aEELtEEg-LPfLILF~~pdD~~s 77 (96)
.++..++| .|.||.|+.+.-.-.
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C 29 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYC 29 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHH
Confidence 45677899 999999999876543
No 75
>PF14875 PIP49_N: N-term cysteine-rich ER, FAM69
Probab=23.26 E-value=52 Score=24.29 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=35.3
Q ss_pred cceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHHHhccccc
Q psy5544 21 EHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQLLGEKH 94 (96)
Q Consensus 21 ~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~~L~~~k~ 94 (96)
..++|.|...+-.- .=||- .-|.-..|.+.+.+-+- =..+|+.| |+++|+..|..+|.+..|
T Consensus 83 ~~~Vy~g~W~~~~v-----viK~~--~~~~~~~~~~~~~~~~~-e~~~~~~P----s~~ef~eMV~~~lk~~lG 144 (158)
T PF14875_consen 83 GKQVYSGSWKGRPV-----VIKCK--MEEALSYDFEPLSWPRS-ELVLFDKP----SMEEFREMVKSFLKNKLG 144 (158)
T ss_pred CceEEEEEECCcEE-----EEEec--ccccccccccccccccc-ccccCCCC----CHHHHHHHHHHHHHHHhC
Confidence 45778887665221 11111 12344444444433332 12367777 999999999999877554
No 76
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=22.90 E-value=2.4e+02 Score=18.69 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=33.4
Q ss_pred eeeecCCCCH------HHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCC
Q psy5544 23 ETYRGNLSAY------DETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPG 73 (96)
Q Consensus 23 ~~f~G~~sn~------~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pd 73 (96)
....||+++. +.+..|+.+...|.+. +...|=|....-+-+-+++.|.|-
T Consensus 23 vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~-~v~GNHD~~~~~~~~~ilv~H~~p 78 (135)
T cd07379 23 LIHAGDLTERGTLEELQKFLDWLKSLPHPHKI-VIAGNHDLTLDPEDTDILVTHGPP 78 (135)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhCCCCeEE-EEECCCCCcCCCCCCEEEEECCCC
Confidence 5567998763 4578888876555432 678887765554556667777753
No 77
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=22.90 E-value=55 Score=23.37 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=17.6
Q ss_pred eccch-hhhhhcCCceEEEeeCCC
Q psy5544 51 TFENA-EELTEEGLPFLILFYAPG 73 (96)
Q Consensus 51 TFeNa-EELtEEgLPfLILF~~pd 73 (96)
+|+.| ++..++|.|.||.||...
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdw 34 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLED 34 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCc
Confidence 66666 556788999999988743
No 78
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=22.84 E-value=1.2e+02 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred ccchhhhhhcCCceEEEeeCCC-ChhHHHHHHHHHHH
Q psy5544 52 FENAEELTEEGLPFLILFYAPG-DTETIKLFKSIVSE 87 (96)
Q Consensus 52 FeNaEELtEEgLPfLILF~~pd-D~~s~k~F~~~V~~ 87 (96)
=||+==--|.|- ++++|+|+ +.+.+++.++++.+
T Consensus 40 ~e~~VH~LEHGa--V~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 40 PERAVHNLEHGA--VWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred hHHHHHhhhcCc--EEEEECCCCCHHHHHHHHHHHhc
Confidence 344445568885 77788888 88889998888775
No 79
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=22.84 E-value=70 Score=24.53 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.0
Q ss_pred ceeeeeccchhhhhhc-----CCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELTEE-----GLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELtEE-----gLPfLILF~~pdD~~s 77 (96)
-|-++|-+|-++++.. +-|.||.||.|-....
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~C 67 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHC 67 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHH
Confidence 4788999999988753 5799999999987654
No 80
>COG4199 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.83 E-value=52 Score=25.77 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=12.6
Q ss_pred CCCCHHHHHHhhhhc
Q psy5544 28 NLSAYDETKVWTADK 42 (96)
Q Consensus 28 ~~sn~~~l~~W~~~k 42 (96)
..++|.++++|+.++
T Consensus 184 ~yss~~El~~wl~~~ 198 (201)
T COG4199 184 AYSSYEELKQWLKSK 198 (201)
T ss_pred hcCCHHHHHHHHHHH
Confidence 357999999999875
No 81
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.25 E-value=1.1e+02 Score=19.46 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=27.3
Q ss_pred CCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCCh
Q psy5544 30 SAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDT 75 (96)
Q Consensus 30 sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~ 75 (96)
.+.+++.+++.++.++.+.+..- .| --+.|++||-.
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--------~~--~~~~f~DPdG~ 103 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--------EG--DSFYFLDPDGH 103 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--------Cc--cEEEEECCCCC
Confidence 58999999999999998765321 12 46789999864
No 82
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.80 E-value=97 Score=20.44 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=16.6
Q ss_pred EEeeCCCChhHHHHHHHHHHH
Q psy5544 67 ILFYAPGDTETIKLFKSIVSE 87 (96)
Q Consensus 67 ILF~~pdD~~s~k~F~~~V~~ 87 (96)
-|=-||+|.+.+..|...+.+
T Consensus 21 yLDTHP~d~~Al~~y~~~~~~ 41 (78)
T PF12652_consen 21 YLDTHPDDQEALEYYNEYSKQ 41 (78)
T ss_pred HhcCCCCcHHHHHHHHHHHHH
Confidence 344689999999999877654
No 83
>COG3403 Uncharacterized conserved protein [Function unknown]
Probab=21.47 E-value=83 Score=25.43 Aligned_cols=57 Identities=23% Similarity=0.188 Sum_probs=40.9
Q ss_pred eeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcC-----CceEEEeeCCCChhHHHHHHHHHHHHhcc
Q psy5544 23 ETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEG-----LPFLILFYAPGDTETIKLFKSIVSEQLLG 91 (96)
Q Consensus 23 ~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEg-----LPfLILF~~pdD~~s~k~F~~~V~~~L~~ 91 (96)
-.+.|++.|-+.+..-.- +. ||-+|+.| .-|+.+|+.|+|+-++++|.+..=.+|.+
T Consensus 56 iavvgdl~~p~aa~gla~-----~L-------aey~t~~~D~g~~aSfv~~fdtPEdl~~e~dyee~lwq~l~~ 117 (257)
T COG3403 56 IAVVGDLRSPSAAXGLAP-----LL-------AEYGTISRDTGKYASFVVTFDTPEDLFTEPDYEERLWQQLRA 117 (257)
T ss_pred EEeccCCCCchhhhhhHH-----HH-------HHHhhhccccCcceEEEEEecChhhhhhhhhHHHHHHHHHHH
Confidence 557799988877765442 22 34444443 46899999999999999999887766643
No 84
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=20.88 E-value=89 Score=22.61 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHhhhhccccce--eeeeccchhhhhhcCCceEEE-----eeCCC--ChhHHHHHHH
Q psy5544 27 GNLSAYDETKVWTADKCVPLV--REITFENAEELTEEGLPFLIL-----FYAPG--DTETIKLFKS 83 (96)
Q Consensus 27 G~~sn~~~l~~W~~~kCvPLV--REITFeNaEELtEEgLPfLIL-----F~~pd--D~~s~k~F~~ 83 (96)
|...+.+.+..|..+ +|++ ==||-+|+.++...|.|..|= ...|+ |.+.++.|.+
T Consensus 138 g~~~~~~~l~~~~~~--~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~ 201 (203)
T cd00405 138 GKTFDWSLLRGLASR--KPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIE 201 (203)
T ss_pred cceEChHHhhccccC--CCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHH
Confidence 556677788777622 4544 468999999999999776552 33444 6666666654
No 85
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=20.77 E-value=74 Score=22.11 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=12.5
Q ss_pred hhhhhhc--CCceEEEeeC
Q psy5544 55 AEELTEE--GLPFLILFYA 71 (96)
Q Consensus 55 aEELtEE--gLPfLILF~~ 71 (96)
.+++.++ |.|.+|.|+.
T Consensus 12 f~~~i~~~~~~~vvV~F~A 30 (119)
T cd02952 12 FLKLLKSHEGKPIFILFYG 30 (119)
T ss_pred HHHHHHhcCCCeEEEEEEc
Confidence 3444444 8999999999
No 86
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.49 E-value=73 Score=21.74 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=14.4
Q ss_pred hhhhcCCceEEEeeCCCC
Q psy5544 57 ELTEEGLPFLILFYAPGD 74 (96)
Q Consensus 57 ELtEEgLPfLILF~~pdD 74 (96)
.-..+++++||.+|.|+.
T Consensus 12 ~ak~e~K~llVylhs~~~ 29 (116)
T cd02991 12 DAKQELRFLLVYLHGDDH 29 (116)
T ss_pred HHHhhCCEEEEEEeCCCC
Confidence 346789999999999853
No 87
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.30 E-value=1.6e+02 Score=22.28 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=42.2
Q ss_pred HHHHHHhhhhccccceeeeeccch----hhhhhcCCceE-EEeeCCCChhHHHHHHHH
Q psy5544 32 YDETKVWTADKCVPLVREITFENA----EELTEEGLPFL-ILFYAPGDTETIKLFKSI 84 (96)
Q Consensus 32 ~~~l~~W~~~kCvPLVREITFeNa----EELtEEgLPfL-ILF~~pdD~~s~k~F~~~ 84 (96)
.+-+....+.+-+|.+|=.+-+.| |-|.+.|++.+ |=|+.|+-.+.+++.++.
T Consensus 4 ~~~~~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~ 61 (213)
T PRK06552 4 SEILTKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL 61 (213)
T ss_pred hHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH
Confidence 344577788999999999998886 55778999988 778889888888877543
No 88
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=20.28 E-value=64 Score=22.89 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=14.6
Q ss_pred cchhhhhhcCCceEEEeeC--CCCh
Q psy5544 53 ENAEELTEEGLPFLILFYA--PGDT 75 (96)
Q Consensus 53 eNaEELtEEgLPfLILF~~--pdD~ 75 (96)
.+|++.-++ ++||||.. |+|+
T Consensus 14 ~~a~~f~~e--~mlIlFge~Ap~~L 36 (121)
T TIGR00849 14 DLAITFLEE--GMIITFGEGAPDDL 36 (121)
T ss_pred hhHHhhccC--CEEEEeCCCCChHH
Confidence 356776666 58999987 4444
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=20.07 E-value=85 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=18.1
Q ss_pred cchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 53 ENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 53 eNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
+|-||+++.| |.||.|+.|.-....
T Consensus 7 ~~~~~~~~~~-~vlv~f~a~wC~~C~ 31 (104)
T cd03000 7 DSFKDVRKED-IWLVDFYAPWCGHCK 31 (104)
T ss_pred hhhhhhccCC-eEEEEEECCCCHHHH
Confidence 4556766655 899999999775443
No 90
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=20.04 E-value=1.5e+02 Score=24.76 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=32.4
Q ss_pred hhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHH
Q psy5544 39 TADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLF 81 (96)
Q Consensus 39 ~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F 81 (96)
...|..|+- |+|.|++..+..|-|.-++|...||+--...-
T Consensus 76 ~~S~~~Pl~--l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~ 116 (365)
T cd00894 76 MASKKKPLW--LEFKCADPTALSNETIGIIFKHGDDLRQDMLI 116 (365)
T ss_pred EcccCCceE--EEEECCCCCccCCCceeEEEeCCCcccHHHHH
Confidence 445567765 89999998888899999999999998654433
Done!