Query psy5544
Match_columns 96
No_of_seqs 71 out of 73
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:15:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r2j_A Thioredoxin domain-cont 99.5 8.3E-14 2.8E-18 107.0 8.5 88 4-94 181-268 (382)
2 2h8l_A Protein disulfide-isome 99.4 1.8E-12 6.1E-17 94.6 7.7 83 5-90 72-163 (252)
3 3ec3_A Protein disulfide-isome 99.3 1.4E-11 4.8E-16 90.1 10.4 82 4-86 72-160 (250)
4 4f9z_D Endoplasmic reticulum r 99.1 1.3E-10 4.4E-15 83.5 6.9 80 4-89 73-160 (227)
5 1sji_A Calsequestrin 2, calseq 99.0 2.1E-09 7E-14 81.3 8.3 78 7-90 192-275 (350)
6 3us3_A Calsequestrin-1; calciu 98.9 7.2E-09 2.5E-13 79.6 9.9 68 5-76 192-261 (367)
7 3f8u_A Protein disulfide-isome 98.9 3.5E-09 1.2E-13 82.3 7.8 74 5-80 176-251 (481)
8 2b5e_A Protein disulfide-isome 98.7 6.7E-09 2.3E-13 81.5 2.3 73 8-87 186-261 (504)
9 3apo_A DNAJ homolog subfamily 98.5 6.1E-08 2.1E-12 79.9 5.1 78 5-86 295-376 (780)
10 3bj5_A Protein disulfide-isome 98.3 6E-07 2.1E-11 62.1 4.9 55 39-94 8-63 (147)
11 3uem_A Protein disulfide-isome 98.1 1.8E-05 6E-10 59.1 8.9 66 5-75 82-148 (361)
12 3apo_A DNAJ homolog subfamily 96.8 0.0022 7.6E-08 52.8 6.4 68 8-76 621-689 (780)
13 2djk_A PDI, protein disulfide- 96.6 0.0021 7.2E-08 42.1 3.8 29 44-72 5-33 (133)
14 1sji_A Calsequestrin 2, calseq 96.4 0.011 3.8E-07 44.3 7.3 72 8-86 93-166 (350)
15 3us3_A Calsequestrin-1; calciu 96.3 0.011 3.7E-07 45.1 6.6 72 8-86 95-168 (367)
16 3f8u_A Protein disulfide-isome 95.5 0.053 1.8E-06 41.8 7.5 73 8-86 79-152 (481)
17 3ed3_A Protein disulfide-isome 94.3 0.11 3.7E-06 38.8 6.3 62 22-86 121-184 (298)
18 2b5e_A Protein disulfide-isome 94.0 0.21 7.3E-06 38.9 7.7 74 8-87 90-165 (504)
19 2r2j_A Thioredoxin domain-cont 94.0 0.11 3.7E-06 39.5 5.8 61 24-86 98-159 (382)
20 3idv_A Protein disulfide-isome 89.1 0.48 1.6E-05 32.4 4.1 52 23-75 102-160 (241)
21 3tco_A Thioredoxin (TRXA-1); d 87.7 0.41 1.4E-05 28.4 2.7 35 45-79 4-38 (109)
22 2yzu_A Thioredoxin; redox prot 85.4 0.59 2E-05 27.6 2.5 32 47-78 3-34 (109)
23 1mek_A Protein disulfide isome 83.9 0.78 2.7E-05 27.5 2.7 31 46-76 8-38 (120)
24 1nsw_A Thioredoxin, TRX; therm 83.3 1.1 3.6E-05 26.6 3.1 32 47-78 2-33 (105)
25 3m9j_A Thioredoxin; oxidoreduc 82.8 0.8 2.7E-05 27.1 2.3 33 46-78 1-36 (105)
26 2e0q_A Thioredoxin; electron t 82.7 0.91 3.1E-05 26.4 2.5 33 47-79 1-33 (104)
27 3ed3_A Protein disulfide-isome 81.9 0.81 2.8E-05 34.0 2.5 41 8-52 235-277 (298)
28 1xwb_A Thioredoxin; dimerizati 81.3 1.1 3.6E-05 26.4 2.5 33 46-78 1-36 (106)
29 1zma_A Bacterocin transport ac 81.3 0.85 2.9E-05 28.1 2.1 35 44-78 11-45 (118)
30 2vim_A Thioredoxin, TRX; thior 80.5 1.2 4.2E-05 26.1 2.6 32 47-78 1-35 (104)
31 1r26_A Thioredoxin; redox-acti 79.1 1.4 4.8E-05 28.1 2.7 32 46-77 20-52 (125)
32 3hz4_A Thioredoxin; NYSGXRC, P 77.2 1.7 5.8E-05 27.8 2.7 33 45-77 6-39 (140)
33 2dj1_A Protein disulfide-isome 76.5 1.9 6.6E-05 26.9 2.7 32 46-77 18-49 (140)
34 2ywm_A Glutaredoxin-like prote 76.1 4.5 0.00015 27.6 4.7 54 23-77 95-151 (229)
35 3die_A Thioredoxin, TRX; elect 75.8 2.1 7.2E-05 25.1 2.6 33 46-79 4-36 (106)
36 3ec3_A Protein disulfide-isome 75.4 3.4 0.00012 29.5 4.1 45 43-87 4-50 (250)
37 3p2a_A Thioredoxin 2, putative 75.4 2.3 7.8E-05 27.2 2.9 34 45-78 38-71 (148)
38 3gnj_A Thioredoxin domain prot 75.3 1.7 5.8E-05 25.8 2.1 32 46-77 5-37 (111)
39 1fb6_A Thioredoxin M; electron 75.0 2.6 8.8E-05 24.7 2.9 32 47-78 2-34 (105)
40 2i4a_A Thioredoxin; acidophIle 75.0 2.7 9.2E-05 24.7 3.0 32 47-78 4-36 (107)
41 3qou_A Protein YBBN; thioredox 74.9 2.5 8.4E-05 30.0 3.2 31 44-74 6-38 (287)
42 2pu9_C TRX-F, thioredoxin F-ty 74.6 3.1 0.00011 25.0 3.3 33 46-78 6-40 (111)
43 2h8l_A Protein disulfide-isome 74.5 5 0.00017 28.4 4.8 46 42-87 3-49 (252)
44 3d6i_A Monothiol glutaredoxin- 74.2 2.6 8.9E-05 25.3 2.8 31 47-77 2-36 (112)
45 3aps_A DNAJ homolog subfamily 74.0 1.9 6.4E-05 26.4 2.1 33 47-79 5-38 (122)
46 2trx_A Thioredoxin; electron t 73.8 2.9 9.8E-05 24.7 2.9 33 46-78 3-36 (108)
47 2dml_A Protein disulfide-isome 73.2 2.8 9.5E-05 25.9 2.8 30 46-75 18-48 (130)
48 3h79_A Thioredoxin-like protei 72.2 2.8 9.5E-05 26.1 2.7 33 45-77 15-48 (127)
49 2djj_A PDI, protein disulfide- 72.1 2.4 8.3E-05 25.7 2.3 32 46-77 8-40 (121)
50 2voc_A Thioredoxin; electron t 71.4 3.2 0.00011 25.2 2.8 29 47-76 3-31 (112)
51 3uvt_A Thioredoxin domain-cont 70.6 3.3 0.00011 24.4 2.6 33 46-79 6-38 (111)
52 1thx_A Thioredoxin, thioredoxi 69.8 4.6 0.00016 23.9 3.2 32 47-78 9-41 (115)
53 1ep7_A Thioredoxin CH1, H-type 69.7 2.9 9.9E-05 24.9 2.2 32 47-78 4-40 (112)
54 3idv_A Protein disulfide-isome 69.3 4 0.00014 27.7 3.1 33 45-77 15-47 (241)
55 1x5d_A Protein disulfide-isome 68.6 3.6 0.00012 25.2 2.6 33 46-78 8-41 (133)
56 1oaz_A Thioredoxin 1; immune s 68.6 3.6 0.00012 25.9 2.7 29 47-75 5-34 (123)
57 1faa_A Thioredoxin F; electron 67.8 5.2 0.00018 24.4 3.2 34 44-77 17-52 (124)
58 1a8l_A Protein disulfide oxido 66.8 8.1 0.00028 26.1 4.3 64 8-76 82-148 (226)
59 2ln3_A De novo designed protei 66.8 4.6 0.00016 26.1 2.8 37 45-82 2-45 (83)
60 1gh2_A Thioredoxin-like protei 66.5 6.1 0.00021 23.5 3.3 32 47-78 3-37 (107)
61 1dby_A Chloroplast thioredoxin 65.8 4.2 0.00014 24.0 2.4 32 47-78 3-35 (107)
62 2i1u_A Thioredoxin, TRX, MPT46 65.3 5.3 0.00018 24.0 2.8 34 46-79 13-47 (121)
63 2l57_A Uncharacterized protein 64.7 2.6 9E-05 26.0 1.4 31 47-77 6-41 (126)
64 1t00_A Thioredoxin, TRX; redox 64.2 6.4 0.00022 23.4 3.1 32 47-78 7-39 (112)
65 2o8v_B Thioredoxin 1; disulfid 64.0 5.5 0.00019 25.2 2.8 31 47-77 24-55 (128)
66 2f51_A Thioredoxin; electron t 62.7 5.2 0.00018 24.8 2.5 33 46-78 4-39 (118)
67 2vlu_A Thioredoxin, thioredoxi 62.7 4.6 0.00016 24.5 2.2 33 45-77 13-49 (122)
68 4f9z_D Endoplasmic reticulum r 60.4 8.7 0.0003 26.7 3.6 44 43-86 7-51 (227)
69 2ppt_A Thioredoxin-2; thiredox 59.6 5.8 0.0002 26.1 2.4 31 47-77 49-79 (155)
70 2dj3_A Protein disulfide-isome 57.1 5.3 0.00018 24.6 1.8 34 45-78 7-41 (133)
71 2yj7_A LPBCA thioredoxin; oxid 61.8 2.2 7.7E-05 24.7 0.0 31 47-77 3-34 (106)
72 2xc2_A Thioredoxinn; oxidoredu 56.9 9 0.00031 23.1 2.8 32 47-78 15-49 (117)
73 2dj0_A Thioredoxin-related tra 56.7 6.6 0.00022 24.7 2.2 30 46-75 8-39 (137)
74 3hxs_A Thioredoxin, TRXP; elec 55.6 7.1 0.00024 24.3 2.2 33 46-78 23-67 (141)
75 2j23_A Thioredoxin; immune pro 54.1 10 0.00035 23.3 2.8 32 47-78 17-49 (121)
76 3uem_A Protein disulfide-isome 53.8 16 0.00055 26.7 4.2 43 45-87 17-60 (361)
77 2l4c_A Endoplasmic reticulum r 52.1 15 0.00051 24.1 3.5 49 39-87 13-64 (124)
78 2wz9_A Glutaredoxin-3; protein 51.8 8.2 0.00028 25.0 2.1 34 46-79 13-49 (153)
79 1syr_A Thioredoxin; SGPP, stru 50.1 8.2 0.00028 23.2 1.8 30 49-78 13-42 (112)
80 2l5l_A Thioredoxin; structural 48.4 13 0.00043 23.4 2.6 32 47-78 11-54 (136)
81 1ti3_A Thioredoxin H, PTTRXH1; 47.0 12 0.0004 22.0 2.1 32 47-78 6-42 (113)
82 3apq_A DNAJ homolog subfamily 46.7 17 0.00057 24.7 3.1 38 8-51 172-209 (210)
83 3dxb_A Thioredoxin N-terminall 46.0 17 0.00058 25.0 3.1 32 46-77 13-45 (222)
84 3evi_A Phosducin-like protein 43.8 18 0.0006 23.3 2.8 30 46-75 4-36 (118)
85 1w4v_A Thioredoxin, mitochondr 43.3 15 0.0005 22.4 2.2 32 47-78 15-47 (119)
86 3emx_A Thioredoxin; structural 42.6 13 0.00043 23.5 1.9 31 47-79 18-48 (135)
87 1wou_A Thioredoxin -related pr 42.5 16 0.00055 22.6 2.3 28 45-72 5-34 (123)
88 2vm1_A Thioredoxin, thioredoxi 41.6 15 0.00053 21.7 2.1 33 47-79 8-45 (118)
89 4euy_A Uncharacterized protein 41.4 11 0.00037 22.4 1.3 29 51-79 7-35 (105)
90 3dml_A Putative uncharacterize 40.8 16 0.00053 24.3 2.2 46 44-89 53-109 (116)
91 2dbc_A PDCL2, unnamed protein 39.8 15 0.0005 23.4 1.9 32 46-77 11-45 (135)
92 1xfl_A Thioredoxin H1; AT3G510 39.4 17 0.00059 22.6 2.1 32 47-78 18-54 (124)
93 3f3q_A Thioredoxin-1; His TAG, 37.5 17 0.0006 21.8 1.9 28 51-78 13-40 (109)
94 3qfa_C Thioredoxin; protein-pr 36.0 20 0.00069 21.8 2.0 29 50-78 17-47 (116)
95 3zzx_A Thioredoxin; oxidoreduc 34.9 20 0.00068 22.2 1.9 32 46-77 1-35 (105)
96 2oe3_A Thioredoxin-3; electron 33.5 19 0.00067 22.0 1.6 24 54-77 22-45 (114)
97 3apq_A DNAJ homolog subfamily 33.0 23 0.00078 24.0 2.1 33 46-78 98-130 (210)
98 2qc7_A ERP31, ERP28, endoplasm 32.2 28 0.00096 25.4 2.5 36 47-83 7-44 (240)
99 3zth_A STU0660; DNA binding, c 31.8 34 0.0012 27.6 3.1 30 58-87 192-221 (350)
100 2l6c_A Thioredoxin; oxidoreduc 31.8 29 0.001 20.8 2.2 31 47-78 5-35 (110)
101 2c0g_A ERP29 homolog, windbeut 30.3 38 0.0013 24.9 3.0 35 46-81 17-53 (248)
102 3cxg_A Putative thioredoxin; m 29.1 42 0.0014 21.0 2.7 33 47-79 22-57 (133)
103 3q6o_A Sulfhydryl oxidase 1; p 26.3 49 0.0017 22.8 2.9 32 46-77 13-45 (244)
104 1a0r_P Phosducin, MEKA, PP33; 25.9 36 0.0012 24.9 2.2 32 46-77 113-148 (245)
105 2d0o_B DIOL dehydratase-reacti 25.6 53 0.0018 22.5 2.9 22 57-78 28-49 (125)
106 2trc_P Phosducin, MEKA, PP33; 24.7 36 0.0012 24.0 2.0 34 46-79 100-137 (217)
107 1wmj_A Thioredoxin H-type; str 24.5 22 0.00077 21.4 0.7 28 47-74 16-48 (130)
108 1x5e_A Thioredoxin domain cont 24.5 50 0.0017 19.9 2.4 30 46-77 8-37 (126)
109 3ul3_B Thioredoxin, thioredoxi 24.0 40 0.0014 20.6 1.9 35 44-78 24-58 (128)
110 1v98_A Thioredoxin; oxidoreduc 23.1 41 0.0014 20.9 1.8 33 45-77 33-65 (140)
111 3f9u_A Putative exported cytoc 20.5 68 0.0023 20.6 2.5 28 50-77 31-62 (172)
112 2c21_A Trypanothione-dependent 20.2 1.4E+02 0.0047 18.2 3.8 36 29-75 85-120 (144)
No 1
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=99.49 E-value=8.3e-14 Score=106.99 Aligned_cols=88 Identities=51% Similarity=0.895 Sum_probs=75.6
Q ss_pred CCCCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHH
Q psy5544 4 PGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKS 83 (96)
Q Consensus 4 ~g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~ 83 (96)
.+.+ |+|++..... ....|.|++++.+.|..|+.++|.|+|+|+|++|++++.+.|+|++++|++++|.++.+.|.+
T Consensus 181 ~~~p-i~~~~~~~~~--~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~ 257 (382)
T 2r2j_A 181 SGDN-IIYKPPGHSA--PDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQN 257 (382)
T ss_dssp --CE-EEEECSSSSS--CCEECCSCTTCHHHHHHHHHHHHSCSSEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHH
T ss_pred CCCc-eEECCCCCCC--cCcccCCCCCCHHHHHHHHHhcccCceEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHH
Confidence 3456 8899864332 458899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccc
Q psy5544 84 IVSEQLLGEKH 94 (96)
Q Consensus 84 ~V~~~L~~~k~ 94 (96)
.+.+.+.+.++
T Consensus 258 ~~~~~~~~~~~ 268 (382)
T 2r2j_A 258 EVARQLISEKG 268 (382)
T ss_dssp HHHHHTGGGTT
T ss_pred HHHHHHHHhCC
Confidence 99887765553
No 2
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=94.55 Aligned_cols=83 Identities=23% Similarity=0.435 Sum_probs=62.6
Q ss_pred CCCeEEecCCCCCC--CCcceee-ecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHH--
Q psy5544 5 GEPIIVFRPDVTTP--LEEHETY-RGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIK-- 79 (96)
Q Consensus 5 g~~~i~Fr~~~~~~--~~~~~~f-~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k-- 79 (96)
+..+++|||+.... +.....| .|++ +.+.|..|+.++|+|||+|+|.+|++++ .+.|++|+|+.+++.++.+
T Consensus 72 ~p~i~~fk~~~~~~kf~e~~~~y~~g~~-~~~~l~~fi~~~~~Plv~e~t~~n~~~~--~~~~~~v~~~~~~~~~~~~~~ 148 (252)
T 2h8l_A 72 GEGIILFRPSHLTNKFEDKTVAYTEQKM-TSGKIKKFIQENIFGICPHMTEDNKDLI--QGKDLLIAYYDVDYEKNAKGS 148 (252)
T ss_dssp SEEEEEECCGGGCCTTSCSEEECCCSSC-CHHHHHHHHHHHSSCSSCEECTTTHHHH--SSSSEEEEEECCBTTTBHHHH
T ss_pred CCcEEEEcchhhcccccccccccCCCCc-CHHHHHHHHHhcccCCeeecccccHhhh--cCCCeEEEEeecchhhcchhH
Confidence 44588999863111 1134789 9997 9999999999999999999999999998 6889999999988754433
Q ss_pred -HHHHH---HHHHhc
Q psy5544 80 -LFKSI---VSEQLL 90 (96)
Q Consensus 80 -~F~~~---V~~~L~ 90 (96)
.|.+. |.+++.
T Consensus 149 ~~~~~~~~~vA~~~~ 163 (252)
T 2h8l_A 149 NYWRNRVMMVAKKFL 163 (252)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 45544 444443
No 3
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}
Probab=99.32 E-value=1.4e-11 Score=90.11 Aligned_cols=82 Identities=11% Similarity=0.196 Sum_probs=62.6
Q ss_pred CCCCeEEecCCCCC--CCCcceeeec-CCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCC----hh
Q psy5544 4 PGEPIIVFRPDVTT--PLEEHETYRG-NLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGD----TE 76 (96)
Q Consensus 4 ~g~~~i~Fr~~~~~--~~~~~~~f~G-~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD----~~ 76 (96)
++..|++|||+... -+.....|.| .-.+.+.|.+|++++|+|||+|+|.+|+.++. +|.|++++|+.++- .+
T Consensus 72 ~~p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~ 150 (250)
T 3ec3_A 72 SLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRT 150 (250)
T ss_dssp CSSEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHH
T ss_pred CCCeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhh-ccCccEEEEEecccccccch
Confidence 44568899995311 0113478996 34688999999999999999999999999999 59999999998652 45
Q ss_pred HHHHHHHHHH
Q psy5544 77 TIKLFKSIVS 86 (96)
Q Consensus 77 s~k~F~~~V~ 86 (96)
..+.|++.+.
T Consensus 151 ~~~~~~~~~~ 160 (250)
T 3ec3_A 151 ATQFWRNKVL 160 (250)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5556666654
No 4
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=99.12 E-value=1.3e-10 Score=83.53 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=59.7
Q ss_pred CCCCeEEecCCCCCCCCcceeeec----CCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEE-eeCCC--Chh
Q psy5544 4 PGEPIIVFRPDVTTPLEEHETYRG----NLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLIL-FYAPG--DTE 76 (96)
Q Consensus 4 ~g~~~i~Fr~~~~~~~~~~~~f~G----~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLIL-F~~pd--D~~ 76 (96)
++..|++||+... ....|.| ++ +.+.|.+|++++|+|+|+|+|.+|++++.+.|+|.++| |++|. +.+
T Consensus 73 ~~p~i~lfk~~~~----~~~~~~~~~~g~~-~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~ 147 (227)
T 4f9z_D 73 TGNTICLFRLVDN----EQLNLEDEDIESI-DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYE 147 (227)
T ss_dssp CSSEEEEEETTTT----EEEEECHHHHHTC-CHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHH
T ss_pred CCCeEEEEEecCc----ccccccccccCCC-CHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHH
Confidence 4556888997431 2367875 54 78999999999999999999999999999999998865 66764 333
Q ss_pred -HHHHHHHHHHHHh
Q psy5544 77 -TIKLFKSIVSEQL 89 (96)
Q Consensus 77 -s~k~F~~~V~~~L 89 (96)
..+.|++ |.+++
T Consensus 148 ~~~~~~~~-vAk~~ 160 (227)
T 4f9z_D 148 ENMHRYQK-AAKLF 160 (227)
T ss_dssp HHHHHHHH-HHHHT
T ss_pred HHHHHHHH-HHHHh
Confidence 3466655 44443
No 5
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.96 E-value=2.1e-09 Score=81.26 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=60.4
Q ss_pred CeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhc---CCceEEEeeCCCCh---hHHHH
Q psy5544 7 PIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEE---GLPFLILFYAPGDT---ETIKL 80 (96)
Q Consensus 7 ~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEE---gLPfLILF~~pdD~---~s~k~ 80 (96)
.+++||+.... ...|.|+..+.+.|..|+.++|.|+|+|+|.+|++++.+. ++|++ +|+.+++. +..+.
T Consensus 192 ~i~~~~~~~~~----~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~l-~f~~~~~~~~~~~~~~ 266 (350)
T 1sji_A 192 EVDFYEPFMDE----PIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIV-AFAERSDPDGYEFLEI 266 (350)
T ss_dssp CEEEECTTCSS----CEECSSSSCCHHHHHHHHHHHCCCSEEECCTTTHHHHHHSCSSSEEEE-EECCTTSHHHHHHHHH
T ss_pred cEEEEeCCCCC----ceecCCCCCCHHHHHHHHHHcCccchhhcChhhHHHHhcCCCCCcEEE-EEEcCCCccHHHHHHH
Confidence 47789985433 2789999889999999999999999999999999999996 45654 48888874 45566
Q ss_pred HHHHHHHHhc
Q psy5544 81 FKSIVSEQLL 90 (96)
Q Consensus 81 F~~~V~~~L~ 90 (96)
|++ |.+++.
T Consensus 267 ~~~-vA~~~~ 275 (350)
T 1sji_A 267 LKQ-VARDNT 275 (350)
T ss_dssp HHH-HHHHGG
T ss_pred HHH-HHHHhC
Confidence 655 344443
No 6
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=98.92 E-value=7.2e-09 Score=79.63 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhc--CCceEEEeeCCCChh
Q psy5544 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEE--GLPFLILFYAPGDTE 76 (96)
Q Consensus 5 g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEE--gLPfLILF~~pdD~~ 76 (96)
+..|++||+... ....|.|+..+.+.|.+|+.++|.|+|+|+|.+|+.++.+. ..|.+++|+.+++.+
T Consensus 192 ~p~i~lf~~~~~----~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~~~~~~~~f~~~~~~~ 261 (367)
T 3us3_A 192 LNEIDFYEAFME----EPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPD 261 (367)
T ss_dssp TTCEEEECTTCS----SCEECSSSSCCHHHHHHHHHHTCSCSEEECCGGGHHHHHHSCBTTEEEEEECCTTSHH
T ss_pred CCeEEEEcCCCC----CCeecCCCCCCHHHHHHHHHHcCccceeecChhhHHHHHhhccCCcEEEEEEcCCChh
Confidence 456888988542 23789998889999999999999999999999999888875 346888999987743
No 7
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.90 E-value=3.5e-09 Score=82.35 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=57.6
Q ss_pred CCCeEEecCCCCCC--CCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHH
Q psy5544 5 GEPIIVFRPDVTTP--LEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKL 80 (96)
Q Consensus 5 g~~~i~Fr~~~~~~--~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~ 80 (96)
+.++++|||..... +.....|.|+..+.+.|..|+.+.|.|+|+|+|.+|++++. +.|++++|+..++.++.+.
T Consensus 176 ~~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~--~~~~~v~~~~~~~~~~~~~ 251 (481)
T 3f8u_A 176 GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQ--GKDLLIAYYDVDYEKNAKG 251 (481)
T ss_dssp SEEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHT--TSSEEEEEECCCTTTCHHH
T ss_pred CCcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHhc--CCCceEEEEecccccchhh
Confidence 34588999753211 11347898666789999999999999999999999999998 5688999998876655443
No 8
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.66 E-value=6.7e-09 Score=81.55 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=58.6
Q ss_pred eEEecCCCCCCCCcceeeecC-CC--CHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCChhHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGN-LS--AYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSI 84 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~-~s--n~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~ 84 (96)
+++||+.. ....|.|+ ++ +.+.|..|+...|.|+|+|+|.+|++++.+.++|+++||+++++.. +.+.+.
T Consensus 186 i~l~~~~~-----~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~ 258 (504)
T 2b5e_A 186 IYLPSAMD-----EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEEL--EEYKPL 258 (504)
T ss_dssp EEETTEEE-----EEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTTSCEEEEEESSHHHH--HHHHHH
T ss_pred EEecCCCC-----cccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCCCcEEEEEecCcccH--HHHHHH
Confidence 56666632 23678898 74 9999999999999999999999999999999999999999875432 555555
Q ss_pred HHH
Q psy5544 85 VSE 87 (96)
Q Consensus 85 V~~ 87 (96)
+..
T Consensus 259 l~~ 261 (504)
T 2b5e_A 259 FTE 261 (504)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 9
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.55 E-value=6.1e-08 Score=79.90 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCeEEecCCCCCC--CCcceeeecCCCCHHHHHHhhhhccccceeeeeccchh-hhhhcCCceEEEeeCCCChhHH-HH
Q psy5544 5 GEPIIVFRPDVTTP--LEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAE-ELTEEGLPFLILFYAPGDTETI-KL 80 (96)
Q Consensus 5 g~~~i~Fr~~~~~~--~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaE-ELtEEgLPfLILF~~pdD~~s~-k~ 80 (96)
+.++++|++..... ......|.|++ |++++..|+++ |+|+|||||.++.+ ++++ .|+||+|+.+++.++. +.
T Consensus 295 ~~p~~~f~~~~~~~~~~~~~~~y~g~~-~~~~i~~~i~~-~~p~v~~it~~~f~~~~~~--~~~lv~F~~~~~~~~~~~~ 370 (780)
T 3apo_A 295 ASTTAYFPPGATLNDREKSSVLFLNSL-DAKEIYMEIIH-NLPDFELLSANQLEDRLAH--HRWLVFFHFGKNENANDPE 370 (780)
T ss_dssp --CEEEECTTCCSSTTTGGGSEEECCC-CHHHHHHHHHH-HSCCCCEECHHHHHHHHTT--SEEEEEEECC-----CCGG
T ss_pred CCceeeeccccccCCCcccceeccccc-cHHHHHHHHHH-hCCCcccCCHHHHHHHhcc--CCeEEEEecCCccccchHH
Confidence 44556665532111 11347899998 89999999995 99999999976665 5655 5999999998887654 55
Q ss_pred HHHHHH
Q psy5544 81 FKSIVS 86 (96)
Q Consensus 81 F~~~V~ 86 (96)
|+++..
T Consensus 371 ~~~~A~ 376 (780)
T 3apo_A 371 LKKLKT 376 (780)
T ss_dssp GGGHHH
T ss_pred HHHHHH
Confidence 554443
No 10
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=98.33 E-value=6e-07 Score=62.07 Aligned_cols=55 Identities=20% Similarity=0.105 Sum_probs=38.1
Q ss_pred hhhccccceeeeeccchhhhhhcCCceEEE-eeCCCChhHHHHHHHHHHHHhccccc
Q psy5544 39 TADKCVPLVREITFENAEELTEEGLPFLIL-FYAPGDTETIKLFKSIVSEQLLGEKH 94 (96)
Q Consensus 39 ~~~kCvPLVREITFeNaEELtEEgLPfLIL-F~~pdD~~s~k~F~~~V~~~L~~~k~ 94 (96)
+.+..+|||+|+|++||+.+.+.++|..+| |..+++.+ .+.+.+.+.......+|
T Consensus 8 ~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~-~~~~~~~~~~vAk~fkg 63 (147)
T 3bj5_A 8 MKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSD-YDGKLSNFKTAAESFKG 63 (147)
T ss_dssp -------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSS-HHHHHHHHHHHHHTTTT
T ss_pred hhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHh-HHHHHHHHHHHHHHcCC
Confidence 567889999999999999999999999776 77766665 66677777665555544
No 11
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=98.09 E-value=1.8e-05 Score=59.13 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=54.0
Q ss_pred CCCeEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCCce-EEEeeCCCCh
Q psy5544 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPF-LILFYAPGDT 75 (96)
Q Consensus 5 g~~~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPf-LILF~~pdD~ 75 (96)
+..+++||+-.. ....|.|++ +-+.|..|+.+...|+|.|+|-+|...+.+.++|. +++|+.+...
T Consensus 82 ~~~i~lfk~f~~----~~~~~~g~~-~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~ 148 (361)
T 3uem_A 82 KDGVVLFKKFDE----GRNNFEGEV-TKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVS 148 (361)
T ss_dssp SSEEEEEESSTT----SEEECCSCC-CHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSS
T ss_pred CCeEEEEEecCC----CccccCCcC-CHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCch
Confidence 345889997321 236789987 77999999999999999999999999999988765 7889987654
No 12
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=96.82 E-value=0.0022 Score=52.82 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=53.5
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhh-hhhcCCceEEEeeCCCChh
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEE-LTEEGLPFLILFYAPGDTE 76 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEE-LtEEgLPfLILF~~pdD~~ 76 (96)
+++|++..... .....|.|+.-+.+.+..|+.+.+-|.|.++|-+|.++ +.+.|.|.||.|+.|....
T Consensus 621 i~~~~~~~~~~-~~~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~ 689 (780)
T 3apo_A 621 IRFYPQKSSKA-YQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGP 689 (780)
T ss_dssp EEEECCCSSSC-CSCEECCCSCCSHHHHHHHHHTTSCCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHH
T ss_pred EEEEcCCCcCc-cchhhcCCCCCCHHHHHHHHhhhcccccccCCHHHHHHHHhcCCCeEEEEEECCCCHH
Confidence 45555533211 02367999778999999999999999999999999965 7788999999999987654
No 13
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=96.57 E-value=0.0021 Score=42.14 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=27.8
Q ss_pred ccceeeeeccchhhhhhcCCceEEEeeCC
Q psy5544 44 VPLVREITFENAEELTEEGLPFLILFYAP 72 (96)
Q Consensus 44 vPLVREITFeNaEELtEEgLPfLILF~~p 72 (96)
.|||.|+|-+|.+++.+.++|.+++|+.+
T Consensus 5 ~plv~~~t~~~f~~~~~~~~pv~v~f~a~ 33 (133)
T 2djk_A 5 SPLIGEIGPETYSDYMSAGIPLAYIFAET 33 (133)
T ss_dssp CCCSEECCHHHHHHHHHTTSCEEEEECSC
T ss_pred cCceeccChHHHHHHhcCCCCEEEEEecC
Confidence 79999999999999999999999999988
No 14
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=96.41 E-value=0.011 Score=44.28 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=57.4
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeee-ccchhhhhh-cCCceEEEeeCCCChhHHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREIT-FENAEELTE-EGLPFLILFYAPGDTETIKLFKSIV 85 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREIT-FeNaEELtE-EgLPfLILF~~pdD~~s~k~F~~~V 85 (96)
+++|+... . ..|.|.. +.+.|.+|+.+..-|.|.+|+ -++.+++.+ ..-+.+|.|+.+.+....+.|.++.
T Consensus 93 ~~~~~~g~--~----~~~~G~~-~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A 165 (350)
T 1sji_A 93 LYVLKGDR--T----IEFDGEF-AADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAA 165 (350)
T ss_dssp EEEEETTE--E----EEECSCC-CHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHH
T ss_pred EEEEECCc--E----EEecCCC-CHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHH
Confidence 56776532 2 5789975 789999999999999999995 788888877 6667889999888888888897655
Q ss_pred H
Q psy5544 86 S 86 (96)
Q Consensus 86 ~ 86 (96)
.
T Consensus 166 ~ 166 (350)
T 1sji_A 166 E 166 (350)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=96.25 E-value=0.011 Score=45.12 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=59.0
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeee-ccchhhhhh-cCCceEEEeeCCCChhHHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREIT-FENAEELTE-EGLPFLILFYAPGDTETIKLFKSIV 85 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREIT-FeNaEELtE-EgLPfLILF~~pdD~~s~k~F~~~V 85 (96)
+++||. + . ...|.|.. +-+.|.+|+.+++-|.|.+|+ -++.+++.. +.-+.+|.|+.+.+....+.|.++.
T Consensus 95 l~~f~~-G-~----~~~y~G~~-~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A 167 (367)
T 3us3_A 95 IYVFKE-D-E----VIEYDGEF-SADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAA 167 (367)
T ss_dssp EEEEET-T-E----EEECCSCC-SHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHH
T ss_pred EEEEEC-C-c----EEEeCCCC-CHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHH
Confidence 677874 2 1 25799986 689999999999999999995 688888887 6778899999988888888997655
Q ss_pred H
Q psy5544 86 S 86 (96)
Q Consensus 86 ~ 86 (96)
.
T Consensus 168 ~ 168 (367)
T 3us3_A 168 E 168 (367)
T ss_dssp H
T ss_pred H
Confidence 4
No 16
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=95.45 E-value=0.053 Score=41.85 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeee-eccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREI-TFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREI-TFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
+++||... .-..|.|. .+.+.+..|+.+..-|-|.+| +-++.+++.+..-+.+|.|+.+.+.+..+.|.++..
T Consensus 79 l~~~~~g~-----~~~~~~G~-~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~ 152 (481)
T 3f8u_A 79 LKIFRDGE-----EAGAYDGP-RTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAAS 152 (481)
T ss_dssp EEEEETTE-----EEEECCSC-SSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHH
T ss_pred EEEEeCCc-----eeeeecCc-cCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHH
Confidence 56776532 12678897 478999999999999999999 778888988888888888888888888999977554
No 17
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.11 Score=38.80 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=47.7
Q ss_pred ceeeecCCCCHHHHHHhhhhccccceeee-eccchhhhhhc-CCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 22 HETYRGNLSAYDETKVWTADKCVPLVREI-TFENAEELTEE-GLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 22 ~~~f~G~~sn~~~l~~W~~~kCvPLVREI-TFeNaEELtEE-gLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
...|.|.. +.+.+..|+.++.-|.|++| +-++.+++... ..|.+|||-..+ ..-..|+++..
T Consensus 121 ~~~y~G~r-~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~~--~~~~~f~~~A~ 184 (298)
T 3ed3_A 121 NEVYSGAR-TLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQD--KISPVYKSIAL 184 (298)
T ss_dssp EEECCSCC-SHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESSS--SCCHHHHHHHH
T ss_pred ceeecCCc-CHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCCC--cchHHHHHHHH
Confidence 36799985 89999999999999999999 56788887765 689999995433 23366765443
No 18
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=94.02 E-value=0.21 Score=38.87 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=54.3
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeeeccchhhhhhcCC--ceEEEeeCCCChhHHHHHHHHH
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGL--PFLILFYAPGDTETIKLFKSIV 85 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgL--PfLILF~~pdD~~s~k~F~~~V 85 (96)
+++|+... .. ....|.|. .+.+.|.+|+.+..-|-|.+|+= ++++.+..- ..+|+|....+....+.|+++.
T Consensus 90 ~~~~~~g~-~~--~~~~~~G~-~~~~~l~~~l~~~~~~~v~~i~~--~~~~~~~~~~~~~~v~~f~~~~~~~~~~f~~~A 163 (504)
T 2b5e_A 90 LKIFKNSD-VN--NSIDYEGP-RTAEAIVQFMIKQSQPAVAVVAD--LPAYLANETFVTPVIVQSGKIDADFNATFYSMA 163 (504)
T ss_dssp EEEEETTC-TT--CEEECCSC-CSHHHHHHHHHHHTSCSEEECSC--HHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHH
T ss_pred EEEEeCCc-cc--cceeecCC-CCHHHHHHHHHHhcCCcceeHHH--HHHHHhcCCCceEEEEEeCCCCchHHHHHHHHH
Confidence 56777643 21 13678897 57899999999999999999987 888877665 4555555556777888997655
Q ss_pred HH
Q psy5544 86 SE 87 (96)
Q Consensus 86 ~~ 87 (96)
..
T Consensus 164 ~~ 165 (504)
T 2b5e_A 164 NK 165 (504)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=93.98 E-value=0.11 Score=39.51 Aligned_cols=61 Identities=15% Similarity=0.350 Sum_probs=41.7
Q ss_pred eeecCCCCHHHHHHhhhhccccceeeee-ccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 24 TYRGNLSAYDETKVWTADKCVPLVREIT-FENAEELTEEGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 24 ~f~G~~sn~~~l~~W~~~kCvPLVREIT-FeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
.|.|.. +.+.|.+|+.+..-|.|.+|+ -++.++| +..-+.+|+|+.+.+....+.|.++..
T Consensus 98 ~~~G~~-~~~~l~~~i~~~~~~~v~~l~~~~~l~~l-~~~~~~~v~ff~~~~~~~~~~f~~~A~ 159 (382)
T 2r2j_A 98 EYRGQR-SVKALADYIRQQKSDPIQEIRDLAEITTL-DRSKRNIIGYFEQKDSDNYRVFERVAN 159 (382)
T ss_dssp ECCSCC-SHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSHHHHHHHHHHH
T ss_pred eecCcc-hHHHHHHHHHHhccCCceecCCHHHHHHh-cCCCCEEEEEECCCCChhHHHHHHHHH
Confidence 588974 789999999999999999995 4566675 556678888888888777788876543
No 20
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=89.06 E-value=0.48 Score=32.38 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=44.2
Q ss_pred eeeecCCCCHHHHHHhhhhcccc-------ceeeeeccchhhhhhcCCceEEEeeCCCCh
Q psy5544 23 ETYRGNLSAYDETKVWTADKCVP-------LVREITFENAEELTEEGLPFLILFYAPGDT 75 (96)
Q Consensus 23 ~~f~G~~sn~~~l~~W~~~kCvP-------LVREITFeNaEELtEEgLPfLILF~~pdD~ 75 (96)
..|.|.. +.+.+.+|+.+..-| .+..+|-+|-+++...+.|.++.|+.+.-.
T Consensus 102 ~~~~g~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~ 160 (241)
T 3idv_A 102 VDYEGSR-TQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCG 160 (241)
T ss_dssp EECCSCS-CHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCT
T ss_pred ccccCcc-cHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCH
Confidence 3577875 779999999987666 688999999999999999999999998653
No 21
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=87.69 E-value=0.41 Score=28.40 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=30.6
Q ss_pred cceeeeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 45 PLVREITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 45 PLVREITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
+.|.++|-++-+++...|.|.||.|+.+.-....+
T Consensus 4 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~ 38 (109)
T 3tco_A 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHL 38 (109)
T ss_dssp CCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHH
T ss_pred CeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHh
Confidence 57889999999999999999999999998766544
No 22
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=85.36 E-value=0.59 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.091 Sum_probs=27.6
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
|.+||-+|-+++...|.|.||.|+.+.-....
T Consensus 3 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~ 34 (109)
T 2yzu_A 3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCR 34 (109)
T ss_dssp CEECCTTTHHHHHHHCSEEEEEEECTTCHHHH
T ss_pred ceEccHhHHHHHhcCCCeEEEEEECCCCHHHH
Confidence 67889999999999999999999998876554
No 23
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=83.87 E-value=0.78 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=26.3
Q ss_pred ceeeeeccchhhhhhcCCceEEEeeCCCChh
Q psy5544 46 LVREITFENAEELTEEGLPFLILFYAPGDTE 76 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~~pdD~~ 76 (96)
-|.++|=+|-+++...|.|.||+|+.+.-..
T Consensus 8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~ 38 (120)
T 1mek_A 8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGH 38 (120)
T ss_dssp TEEECCTTTHHHHHHHCSEEEEEEECSSCST
T ss_pred CcEEechhhHHHHHccCCeEEEEEECCCCHH
Confidence 3778888999999999999999999986543
No 24
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=83.31 E-value=1.1 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=27.1
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
|.+||=+|-+++...|.|.||.|+.+.-....
T Consensus 2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~ 33 (105)
T 1nsw_A 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCR 33 (105)
T ss_dssp CEEECTTTHHHHHSSSSCEEEEEECTTCHHHH
T ss_pred ceeccHHhHHHHHhCCCcEEEEEECCCCHHHH
Confidence 56888888889999999999999998876543
No 25
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=82.81 E-value=0.8 Score=27.07 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=25.8
Q ss_pred ceeee-eccchhhhhh--cCCceEEEeeCCCChhHH
Q psy5544 46 LVREI-TFENAEELTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREI-TFeNaEELtE--EgLPfLILF~~pdD~~s~ 78 (96)
||.+| |-++-+++.. .|.|.+|.|+.+.-....
T Consensus 1 mv~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~ 36 (105)
T 3m9j_A 1 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCK 36 (105)
T ss_dssp CCEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHH
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhH
Confidence 56677 5677777777 799999999999876553
No 26
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=82.71 E-value=0.91 Score=26.37 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=27.3
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
|.++|-+|-+++...|.|.||.|+.+.-....+
T Consensus 1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~ 33 (104)
T 2e0q_A 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLI 33 (104)
T ss_dssp CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHH
T ss_pred CeecCHHHHHHHHhcCCcEEEEEECCCChhHHH
Confidence 567888888888899999999999987765543
No 27
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=81.85 E-value=0.81 Score=34.01 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=31.0
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhh--hccccceeeeec
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTA--DKCVPLVREITF 52 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~--~kCvPLVREITF 52 (96)
+++|++... .-..|.|+..+.+.+.+|+. ..-+|++.++|=
T Consensus 235 lv~~~~~~~----~~~~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls~ 277 (298)
T 3ed3_A 235 LVVFDADKD----KFWEYEGNSINKNDISKFLRDTFSITPNEGPFSR 277 (298)
T ss_dssp EEEEETTTT----EEEECCCSSCCHHHHHHHHHHHHTCCCSSSTTSH
T ss_pred EEEEcCCCC----ceEEeccccCCHHHHHHHHHhhcCCCCCcCCCch
Confidence 677887542 23789988889999999999 556788876653
No 28
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=81.34 E-value=1.1 Score=26.44 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=26.3
Q ss_pred ceeeeec-cchhhhhh--cCCceEEEeeCCCChhHH
Q psy5544 46 LVREITF-ENAEELTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREITF-eNaEELtE--EgLPfLILF~~pdD~~s~ 78 (96)
||.+||= ++-+++.. .|.|.++.|+.+.-....
T Consensus 1 mv~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~ 36 (106)
T 1xwb_A 1 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCK 36 (106)
T ss_dssp CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHH
T ss_pred CceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHH
Confidence 4778887 77777777 799999999998876553
No 29
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=81.27 E-value=0.85 Score=28.09 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=29.1
Q ss_pred ccceeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 44 VPLVREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 44 vPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
+.-+.++|-++.+++...|.|.|+.|+.|--....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~ 45 (118)
T 1zma_A 11 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCR 45 (118)
T ss_dssp TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHH
T ss_pred HhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHH
Confidence 44577899999999999999999999998765543
No 30
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=80.47 E-value=1.2 Score=26.09 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=25.1
Q ss_pred eeeeec-cchhhhhh--cCCceEEEeeCCCChhHH
Q psy5544 47 VREITF-ENAEELTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITF-eNaEELtE--EgLPfLILF~~pdD~~s~ 78 (96)
|++|+= +|-+++.. .|.|.+|.|+.+.-....
T Consensus 1 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~ 35 (104)
T 2vim_A 1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCR 35 (104)
T ss_dssp CEECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHH
T ss_pred CeecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHH
Confidence 567776 77777777 799999999998876553
No 31
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=79.07 E-value=1.4 Score=28.10 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=27.3
Q ss_pred ceeeeec-cchhhhhhcCCceEEEeeCCCChhH
Q psy5544 46 LVREITF-ENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITF-eNaEELtEEgLPfLILF~~pdD~~s 77 (96)
||.+||= ++-+++...|.|.||.|+.+.-...
T Consensus 20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C 52 (125)
T 1r26_A 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPC 52 (125)
T ss_dssp CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHH
T ss_pred ceEECCCHHHHHHHHccCCEEEEEEECCcCHhH
Confidence 6888887 8888888999999999999876544
No 32
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=77.20 E-value=1.7 Score=27.82 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=28.2
Q ss_pred cceeeeeccchh-hhhhcCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAE-ELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaE-ELtEEgLPfLILF~~pdD~~s 77 (96)
+.|.+||-+|-+ .+...+.|.||.|+.+.-...
T Consensus 6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C 39 (140)
T 3hz4_A 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYC 39 (140)
T ss_dssp TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHH
T ss_pred cceEEcchHhHHHHHHhCCCcEEEEEECCCChhH
Confidence 458899999998 888899999999999987544
No 33
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.45 E-value=1.9 Score=26.94 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=27.3
Q ss_pred ceeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
-|.+||=+|-+++...+.|.||.|+.+.-...
T Consensus 18 ~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C 49 (140)
T 2dj1_A 18 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHC 49 (140)
T ss_dssp TEEECCTTTHHHHHTTCSEEEEEECCTTCHHH
T ss_pred CCEEcChHhHHHHHhcCCeEEEEEECCCCHHH
Confidence 37888889999999999999999999876554
No 34
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=76.05 E-value=4.5 Score=27.63 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=39.9
Q ss_pred eeeecCCCCHHHHHHhhhhccc--cceeeeeccchhhhhhcCCce-EEEeeCCCChhH
Q psy5544 23 ETYRGNLSAYDETKVWTADKCV--PLVREITFENAEELTEEGLPF-LILFYAPGDTET 77 (96)
Q Consensus 23 ~~f~G~~sn~~~l~~W~~~kCv--PLVREITFeNaEELtEEgLPf-LILF~~pdD~~s 77 (96)
..|.|.. +-+++..|+.+.-- +-+.++|=+|-+++...+-|. ++.|+.|.-...
T Consensus 95 ~~~~G~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C 151 (229)
T 2ywm_A 95 IRYIGLP-AGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYC 151 (229)
T ss_dssp EEEESCC-CTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTH
T ss_pred ceecCCc-cHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEECCCCcch
Confidence 7789975 45778888876431 346778888888888888888 667999876543
No 35
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=75.78 E-value=2.1 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=27.3
Q ss_pred ceeeeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 46 LVREITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
.|.++|-+|-++.. .+.|.||.|+.+.-....+
T Consensus 4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~ 36 (106)
T 3die_A 4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKM 36 (106)
T ss_dssp CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHH
T ss_pred ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHH
Confidence 46788999998888 9999999999988765543
No 36
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}
Probab=75.41 E-value=3.4 Score=29.45 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=36.3
Q ss_pred cccceeee-eccchhhhhhc-CCceEEEeeCCCChhHHHHHHHHHHH
Q psy5544 43 CVPLVREI-TFENAEELTEE-GLPFLILFYAPGDTETIKLFKSIVSE 87 (96)
Q Consensus 43 CvPLVREI-TFeNaEELtEE-gLPfLILF~~pdD~~s~k~F~~~V~~ 87 (96)
.-|-|++| |-+++|++.+. .-..+|-|..+.+....+.|.++...
T Consensus 4 ~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~~~A~~ 50 (250)
T 3ec3_A 4 GSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANT 50 (250)
T ss_dssp -CCSSEECCCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHHHHHHH
T ss_pred CCCCceecCCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHHHHHHh
Confidence 45889999 46899998777 77788888888899999999876653
No 37
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=75.38 E-value=2.3 Score=27.20 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=28.9
Q ss_pred cceeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 45 PLVREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 45 PLVREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
.-|.++|-+|.+++...|.|.||.|+.+.-....
T Consensus 38 ~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~ 71 (148)
T 3p2a_A 38 GEVINATAETLDKLLQDDLPMVIDFWAPWCGPCR 71 (148)
T ss_dssp CCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHH
T ss_pred CCceecCHHHHHHHHhcCCcEEEEEECCCCHHHH
Confidence 3478899999999999999999999998875543
No 38
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=75.35 E-value=1.7 Score=25.84 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.0
Q ss_pred ceeeeeccchhhhh-hcCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELT-EEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELt-EEgLPfLILF~~pdD~~s 77 (96)
.|.++|=+|-+++. ..+.|.||.|+.+.-...
T Consensus 5 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C 37 (111)
T 3gnj_A 5 SLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVC 37 (111)
T ss_dssp CSEECCHHHHHHHHTTSCCCEEEEEECSSCHHH
T ss_pred cceecCHHHHHHHHHhcCCEEEEEEeCCCChhH
Confidence 36788888888888 889999999999987554
No 39
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=75.01 E-value=2.6 Score=24.67 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=24.8
Q ss_pred eeeeeccchhh-hhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEE-LTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEE-LtEEgLPfLILF~~pdD~~s~ 78 (96)
|.++|=+|-++ +.+.|.|.|+.|+.+.-....
T Consensus 2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~ 34 (105)
T 1fb6_A 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCK 34 (105)
T ss_dssp CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHH
T ss_pred ceechhhhHHHHHhcCCCcEEEEEECCCChHHH
Confidence 56788888877 446789999999998776543
No 40
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=74.99 E-value=2.7 Score=24.66 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=25.6
Q ss_pred eeeeeccchhhh-hhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEEL-TEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEEL-tEEgLPfLILF~~pdD~~s~ 78 (96)
|.+||=+|.++. .+.|.|.|+.|+.+.-....
T Consensus 4 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~ 36 (107)
T 2i4a_A 4 TLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCK 36 (107)
T ss_dssp EEECCTTTHHHHTTTCSSEEEEEEECTTCHHHH
T ss_pred eeecchhhhhHHHHhCCCEEEEEEECCCChhHH
Confidence 678888888744 57899999999998876553
No 41
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=74.88 E-value=2.5 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.8
Q ss_pred ccceeeeeccchhhhhhc--CCceEEEeeCCCC
Q psy5544 44 VPLVREITFENAEELTEE--GLPFLILFYAPGD 74 (96)
Q Consensus 44 vPLVREITFeNaEELtEE--gLPfLILF~~pdD 74 (96)
.+.|.+||-+|-+++.+. |.|.||.|+.|--
T Consensus 6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC 38 (287)
T 3qou_A 6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERS 38 (287)
T ss_dssp CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTC
T ss_pred CCccEECCHHHHHHHHHhcCCCeEEEEEECCCC
Confidence 367999999999998876 9999999999753
No 42
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=74.63 E-value=3.1 Score=24.97 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=26.7
Q ss_pred ceeeeeccchhhhhh--cCCceEEEeeCCCChhHH
Q psy5544 46 LVREITFENAEELTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREITFeNaEELtE--EgLPfLILF~~pdD~~s~ 78 (96)
-|.+||=+|-+++.. .|.|.||.|+.+.-....
T Consensus 6 ~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~ 40 (111)
T 2pu9_C 6 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSK 40 (111)
T ss_dssp SEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHH
T ss_pred ccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHH
Confidence 477899899888877 599999999998765543
No 43
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=74.49 E-value=5 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=35.0
Q ss_pred ccccceeee-eccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHH
Q psy5544 42 KCVPLVREI-TFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSE 87 (96)
Q Consensus 42 kCvPLVREI-TFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~ 87 (96)
..-|-|.+| |-+.++++.+..-..+|.|..+.+....+.|.++...
T Consensus 3 ~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~~~A~~ 49 (252)
T 2h8l_A 3 LGSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASN 49 (252)
T ss_dssp ---CCEEECCSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred cCCCCceeecCHHHHHHHhhcCCeEEEEEECCCCChHHHHHHHHHHh
Confidence 346889999 5888888777777788888888888888999876553
No 44
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=74.25 E-value=2.6 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=23.5
Q ss_pred eeeeec-cchhhhhhc---CCceEEEeeCCCChhH
Q psy5544 47 VREITF-ENAEELTEE---GLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITF-eNaEELtEE---gLPfLILF~~pdD~~s 77 (96)
|.+||= +|-+++... |.|.|+.|+.+.-...
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C 36 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPC 36 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CH
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHH
Confidence 567776 788888876 9999999999876544
No 45
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=74.04 E-value=1.9 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.4
Q ss_pred eeeeeccch-hhhhhcCCceEEEeeCCCChhHHH
Q psy5544 47 VREITFENA-EELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREITFeNa-EELtEEgLPfLILF~~pdD~~s~k 79 (96)
|.+||-+|. +.+...+.|.||.|+.+.-....+
T Consensus 5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~ 38 (122)
T 3aps_A 5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQN 38 (122)
T ss_dssp SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHH
T ss_pred hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHH
Confidence 678888888 457788999999999998765533
No 46
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=73.76 E-value=2.9 Score=24.75 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=25.8
Q ss_pred ceeeeeccchh-hhhhcCCceEEEeeCCCChhHH
Q psy5544 46 LVREITFENAE-ELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREITFeNaE-ELtEEgLPfLILF~~pdD~~s~ 78 (96)
-|.++|=+|-+ .+...|.|.||.|+.+.-....
T Consensus 3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~ 36 (108)
T 2trx_A 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCK 36 (108)
T ss_dssp TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHH
T ss_pred cceecchhhHHHHHHhcCCeEEEEEECCCCHhHH
Confidence 36778888887 4567899999999998776543
No 47
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.22 E-value=2.8 Score=25.85 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=24.0
Q ss_pred ceeeeeccchhh-hhhcCCceEEEeeCCCCh
Q psy5544 46 LVREITFENAEE-LTEEGLPFLILFYAPGDT 75 (96)
Q Consensus 46 LVREITFeNaEE-LtEEgLPfLILF~~pdD~ 75 (96)
-|.+||=+|-++ +.+.+.|.||.|+.+.-.
T Consensus 18 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~ 48 (130)
T 2dml_A 18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCG 48 (130)
T ss_dssp SSEECCTTTHHHHTTTCSSCEEEEEECTTCS
T ss_pred CcEECCHHHHHHHHhcCCCeEEEEEECCCCH
Confidence 467788888887 557899999999997643
No 48
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=72.24 E-value=2.8 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.8
Q ss_pred cceeeeeccchhhhhh-cCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAEELTE-EGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaEELtE-EgLPfLILF~~pdD~~s 77 (96)
.-|.++|=+|-+++.. .+.|.||.||.|--...
T Consensus 15 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C 48 (127)
T 3h79_A 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHS 48 (127)
T ss_dssp CCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHH
T ss_pred CceEECChhhHHHHHhCCCCCEEEEEECCccHHH
Confidence 3478899999888874 69999999999976543
No 49
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=72.11 E-value=2.4 Score=25.70 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=26.0
Q ss_pred ceeeeeccchhhhh-hcCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELT-EEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELt-EEgLPfLILF~~pdD~~s 77 (96)
-|.++|=+|-+++. ..+.|.||.||.|.-...
T Consensus 8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C 40 (121)
T 2djj_A 8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHC 40 (121)
T ss_dssp SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTH
T ss_pred CeEEecccCHHHHhhcCCCCEEEEEECCCCHhH
Confidence 47788888888874 789999999999876544
No 50
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=71.37 E-value=3.2 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=24.1
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChh
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTE 76 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~ 76 (96)
|.+||=+|-+++. .|.|.||.|+.+.-..
T Consensus 3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~ 31 (112)
T 2voc_A 3 IVKATDQSFSAET-SEGVVLADFWAPWCGP 31 (112)
T ss_dssp CEECCTTTHHHHH-SSSEEEEEEECTTBGG
T ss_pred eEEecHHHHHHHh-CCCEEEEEEECCCCHH
Confidence 5688888888888 9999999999976543
No 51
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=70.60 E-value=3.3 Score=24.43 Aligned_cols=33 Identities=24% Similarity=0.158 Sum_probs=27.0
Q ss_pred ceeeeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 46 LVREITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
.|.++|-+|-+++.. +.|.||.|+.+.-....+
T Consensus 6 ~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~ 38 (111)
T 3uvt_A 6 TVLALTENNFDDTIA-EGITFIKFYAPWCGHCKT 38 (111)
T ss_dssp CSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHH
T ss_pred cceEcChhhHHHHhc-CCcEEEEEECCCChhHHH
Confidence 478899999999888 669999999988765543
No 52
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=69.80 E-value=4.6 Score=23.93 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=25.6
Q ss_pred eeeeeccchhhh-hhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEEL-TEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEEL-tEEgLPfLILF~~pdD~~s~ 78 (96)
|.+||-+|.++. .+.|.|.||.|+.+.-....
T Consensus 9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~ 41 (115)
T 1thx_A 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQ 41 (115)
T ss_dssp EEECCGGGHHHHTTTCSSCEEEEEECTTCTTHH
T ss_pred eEEeeccchhhHhhcCCceEEEEEECCCCHHHH
Confidence 778888888755 57899999999998765543
No 53
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=69.68 E-value=2.9 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=24.3
Q ss_pred eeee-eccchhhhhhc----CCceEEEeeCCCChhHH
Q psy5544 47 VREI-TFENAEELTEE----GLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREI-TFeNaEELtEE----gLPfLILF~~pdD~~s~ 78 (96)
|.+| |-+|-+++... |.|.||.|+.+.-....
T Consensus 4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~ 40 (112)
T 1ep7_A 4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCK 40 (112)
T ss_dssp EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHH
T ss_pred EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHH
Confidence 5667 56777777776 99999999998765543
No 54
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=69.32 E-value=4 Score=27.69 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=28.6
Q ss_pred cceeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
.-|.++|=+|-+++...|.|.||.|+.+.-...
T Consensus 15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C 47 (241)
T 3idv_A 15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHC 47 (241)
T ss_dssp TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHH
T ss_pred CCcEEecccCHHHHHhcCCeEEEEEECCCCHHH
Confidence 458899999999999999999999999876544
No 55
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.65 E-value=3.6 Score=25.24 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.0
Q ss_pred ceeeeeccchhhhh-hcCCceEEEeeCCCChhHH
Q psy5544 46 LVREITFENAEELT-EEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREITFeNaEELt-EEgLPfLILF~~pdD~~s~ 78 (96)
-|.++|-+|.+++. ..+.|.||.|+.+.-....
T Consensus 8 ~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~ 41 (133)
T 1x5d_A 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCK 41 (133)
T ss_dssp SCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHH
T ss_pred cCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHH
Confidence 36788888888754 7789999999999765543
No 56
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=68.56 E-value=3.6 Score=25.95 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=23.4
Q ss_pred eeeeeccchh-hhhhcCCceEEEeeCCCCh
Q psy5544 47 VREITFENAE-ELTEEGLPFLILFYAPGDT 75 (96)
Q Consensus 47 VREITFeNaE-ELtEEgLPfLILF~~pdD~ 75 (96)
|.++|-+|-+ .+...|.|.||.|+.|.-.
T Consensus 5 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~ 34 (123)
T 1oaz_A 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCG 34 (123)
T ss_dssp CEECCSTTHHHHTTSCSSEEEEEEECSSCS
T ss_pred cEecChhhHHHHHHhCCCeEEEEEECCCCc
Confidence 6688888886 5568899999999998543
No 57
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=67.84 E-value=5.2 Score=24.43 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=27.2
Q ss_pred ccceeeeeccchhhhhh--cCCceEEEeeCCCChhH
Q psy5544 44 VPLVREITFENAEELTE--EGLPFLILFYAPGDTET 77 (96)
Q Consensus 44 vPLVREITFeNaEELtE--EgLPfLILF~~pdD~~s 77 (96)
..-|.++|=+|-+++.. .|.|.++.|+.+.-...
T Consensus 17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C 52 (124)
T 1faa_A 17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPC 52 (124)
T ss_dssp TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHH
T ss_pred CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhH
Confidence 34578888888888776 69999999998876554
No 58
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=66.84 E-value=8.1 Score=26.08 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=42.0
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccc--cceeeeeccchhhhhhcCCce-EEEeeCCCChh
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCV--PLVREITFENAEELTEEGLPF-LILFYAPGDTE 76 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCv--PLVREITFeNaEELtEEgLPf-LILF~~pdD~~ 76 (96)
+++|+.... ....|.|.. +-+++..|+..-.- .-+..++=++.+.+...+.|. ++.|+.|--..
T Consensus 82 ~~~~~~g~~----~~~~~~G~~-~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~ 148 (226)
T 1a8l_A 82 TTITQDGKD----FGVRYFGLP-AGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPY 148 (226)
T ss_dssp EEEEETTBC----CSEEEESCC-CTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTT
T ss_pred EEEEcCCce----eeEEEeccC-cHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCc
Confidence 456654321 126788865 45678888766321 124567777788888888898 99999986543
No 59
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=66.75 E-value=4.6 Score=26.14 Aligned_cols=37 Identities=41% Similarity=0.544 Sum_probs=30.0
Q ss_pred cceeeeeccchhhhhh-------cCCceEEEeeCCCChhHHHHHH
Q psy5544 45 PLVREITFENAEELTE-------EGLPFLILFYAPGDTETIKLFK 82 (96)
Q Consensus 45 PLVREITFeNaEELtE-------EgLPfLILF~~pdD~~s~k~F~ 82 (96)
.|.|-||-+|-|||.| +||-+-+-|-..||++. ..|.
T Consensus 2 gltrtitsqnkeelleialkfisqgldlevefdstddkei-eefe 45 (83)
T 2ln3_A 2 GLTRTITSQNKEELLEIALKFISQGLDLEVEFDSTDDKEI-EEFE 45 (83)
T ss_dssp CCCCEEEESCHHHHHHHHHHHHHHTCEEEEEECCCCHHHH-HHHH
T ss_pred CcceehhhcCHHHHHHHHHHHHhcCCceEEEecCCChHHH-HHHH
Confidence 5789999999999876 78888889988888764 5564
No 60
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=66.55 E-value=6.1 Score=23.47 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=23.8
Q ss_pred eeee-eccchhhhh--hcCCceEEEeeCCCChhHH
Q psy5544 47 VREI-TFENAEELT--EEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREI-TFeNaEELt--EEgLPfLILF~~pdD~~s~ 78 (96)
|.+| |-++-+++. ..|.|.|+.|+.|.-....
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~ 37 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCL 37 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHH
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhH
Confidence 4556 456777777 5799999999999876553
No 61
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=65.77 E-value=4.2 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred eeeeeccchhhh-hhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEEL-TEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEEL-tEEgLPfLILF~~pdD~~s~ 78 (96)
|.++|-+|-+++ ...|.|.|+.|+.+.-....
T Consensus 3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~ 35 (107)
T 1dby_A 3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCR 35 (107)
T ss_dssp CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHH
T ss_pred cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHH
Confidence 567788887774 46799999999998776543
No 62
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=65.30 E-value=5.3 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=26.4
Q ss_pred ceeeeeccchhh-hhhcCCceEEEeeCCCChhHHH
Q psy5544 46 LVREITFENAEE-LTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 46 LVREITFeNaEE-LtEEgLPfLILF~~pdD~~s~k 79 (96)
-|.+||-+|.++ +...|.|.||.|+.+.-....+
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~ 47 (121)
T 2i1u_A 13 ATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKM 47 (121)
T ss_dssp CSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHH
T ss_pred cceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHH
Confidence 467888888874 5678999999999988765533
No 63
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=64.73 E-value=2.6 Score=25.98 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=23.8
Q ss_pred eeeeeccchh-----hhhhcCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAE-----ELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaE-----ELtEEgLPfLILF~~pdD~~s 77 (96)
+-++|++|-+ +....|.|.||.|+.+.-...
T Consensus 6 ~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C 41 (126)
T 2l57_A 6 IKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYC 41 (126)
T ss_dssp SSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHH
T ss_pred cCCCCccccchhHHHHHHhCCCcEEEEEECCCCccH
Confidence 4466777766 667889999999999876544
No 64
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=64.20 E-value=6.4 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.0
Q ss_pred eeeeeccchh-hhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAE-ELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaE-ELtEEgLPfLILF~~pdD~~s~ 78 (96)
|.++|=+|.+ .+...|.|.|+.|+.+.-....
T Consensus 7 v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~ 39 (112)
T 1t00_A 7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCR 39 (112)
T ss_dssp CEEECTTTHHHHTTTCSSCEEEEEECTTCHHHH
T ss_pred EEecchhhHHHHHhhCCCeEEEEEECCCCHhHH
Confidence 6778888875 4567899999999998876543
No 65
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=64.02 E-value=5.5 Score=25.18 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=24.9
Q ss_pred eeeeeccchh-hhhhcCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAE-ELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaE-ELtEEgLPfLILF~~pdD~~s 77 (96)
|.+||-+|-+ .+.+.|.|.||.|+.+.-...
T Consensus 24 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C 55 (128)
T 2o8v_B 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPA 55 (128)
T ss_dssp SEEECTTTHHHHTTTCSSEEEEEEECSSCHHH
T ss_pred cEecChhhHHHHHHhcCCEEEEEEECCCCHHH
Confidence 6788888887 456789999999999876544
No 66
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=62.73 E-value=5.2 Score=24.77 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=24.2
Q ss_pred ceeee--eccchh-hhhhcCCceEEEeeCCCChhHH
Q psy5544 46 LVREI--TFENAE-ELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREI--TFeNaE-ELtEEgLPfLILF~~pdD~~s~ 78 (96)
-|.+| |.++.+ .+.+.|.|.||.|+.+.-....
T Consensus 4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~ 39 (118)
T 2f51_A 4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQ 39 (118)
T ss_dssp CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHH
T ss_pred cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHH
Confidence 45666 566666 5667899999999998766553
No 67
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=62.70 E-value=4.6 Score=24.51 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=25.1
Q ss_pred cceeeeeccchhhhhh----cCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAEELTE----EGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaEELtE----EgLPfLILF~~pdD~~s 77 (96)
|.|..+|-+|-++... .|.|.||.|+.+.-...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C 49 (122)
T 2vlu_A 13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPC 49 (122)
T ss_dssp CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHH
T ss_pred cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHH
Confidence 5677777777777665 49999999999876544
No 68
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=60.42 E-value=8.7 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=35.8
Q ss_pred cccceeee-eccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHH
Q psy5544 43 CVPLVREI-TFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVS 86 (96)
Q Consensus 43 CvPLVREI-TFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~ 86 (96)
|..-+.|| |-+|++++.+..-..+|-|..+.+....+.|.++..
T Consensus 7 ~~~~~~~l~s~~~~~~~l~~~~v~vVgff~~~~~~~~~~f~~~A~ 51 (227)
T 4f9z_D 7 AAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQ 51 (227)
T ss_dssp --CCCEECCSHHHHHHHHHTSSEEEEEECSCSCSTHHHHHHHHTT
T ss_pred CcCCCeeeCCHHHHHHHHhcCCeEEEEEecCCCchhHHHHHHHHH
Confidence 56667788 679999988888899999999999999999987654
No 69
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=59.62 E-value=5.8 Score=26.13 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.7
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
+.++|-+|-+++...|.|.||.|+.|.-...
T Consensus 49 ~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C 79 (155)
T 2ppt_A 49 VAGIDPAILARAERDDLPLLVDFWAPWCGPC 79 (155)
T ss_dssp EEECCHHHHHHHTTCSSCEEEEEECTTCHHH
T ss_pred CccCCHHHHHHHHhCCCcEEEEEECCCCHHH
Confidence 6788888888888889999999999876443
No 70
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.14 E-value=5.3 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=25.9
Q ss_pred cceeeeeccchhhhhh-cCCceEEEeeCCCChhHH
Q psy5544 45 PLVREITFENAEELTE-EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 45 PLVREITFeNaEELtE-EgLPfLILF~~pdD~~s~ 78 (96)
+-|.+||=+|-+++.. .|.|.||.|+.+.-....
T Consensus 7 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~ 41 (133)
T 2dj3_A 7 GPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCK 41 (133)
T ss_dssp CSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHH
T ss_pred CceEEEcCCCHHHHhccCCCcEEEEEECCCChhHH
Confidence 3567788888877765 599999999998765543
No 71
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=61.81 E-value=2.2 Score=24.70 Aligned_cols=31 Identities=35% Similarity=0.416 Sum_probs=23.3
Q ss_pred eeeeeccchhh-hhhcCCceEEEeeCCCChhH
Q psy5544 47 VREITFENAEE-LTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 47 VREITFeNaEE-LtEEgLPfLILF~~pdD~~s 77 (96)
|.+||-+|..+ +...|.|.+|+|+.+.-...
T Consensus 3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C 34 (106)
T 2yj7_A 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPC 34 (106)
Confidence 56777788774 45789999999998765543
No 72
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=56.86 E-value=9 Score=23.13 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=25.0
Q ss_pred eeeeec-cchhhhhh--cCCceEEEeeCCCChhHH
Q psy5544 47 VREITF-ENAEELTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITF-eNaEELtE--EgLPfLILF~~pdD~~s~ 78 (96)
|.+||= +|-+++.. .|.|.++.|+.+.-....
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~ 49 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCK 49 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHH
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHH
Confidence 677776 77777777 799999999998766543
No 73
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.67 E-value=6.6 Score=24.71 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=23.4
Q ss_pred ceeeeeccchhhhhhcCC--ceEEEeeCCCCh
Q psy5544 46 LVREITFENAEELTEEGL--PFLILFYAPGDT 75 (96)
Q Consensus 46 LVREITFeNaEELtEEgL--PfLILF~~pdD~ 75 (96)
.|.++|-+|-+++...+. |.||.|+.+--.
T Consensus 8 ~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~ 39 (137)
T 2dj0_A 8 YIKYFNDKTIDEELERDKRVTWIVEFFANWSN 39 (137)
T ss_dssp CCEECCTTHHHHHHHHSTTSCEEEEECCTTCS
T ss_pred eEEEccHhhHHHHHhcCCCCEEEEEEECCCCH
Confidence 477888888887776655 999999997543
No 74
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=55.55 E-value=7.1 Score=24.34 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=23.9
Q ss_pred ceeeeeccchhhhhh------------cCCceEEEeeCCCChhHH
Q psy5544 46 LVREITFENAEELTE------------EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREITFeNaEELtE------------EgLPfLILF~~pdD~~s~ 78 (96)
-|.+||-+|-+.... .|.|.||.|+.+.-....
T Consensus 23 ~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~ 67 (141)
T 3hxs_A 23 GTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCK 67 (141)
T ss_dssp CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHH
T ss_pred CcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHH
Confidence 466777777666555 489999999998765443
No 75
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=54.10 E-value=10 Score=23.35 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=22.9
Q ss_pred eeeeec-cchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITF-ENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITF-eNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
+++|+= +|-+++...|.|.||.|+.+.-....
T Consensus 17 ~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~ 49 (121)
T 2j23_A 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCK 49 (121)
T ss_dssp EEECCSHHHHHHHHSSSSCEEEEEECTTCSTHH
T ss_pred eEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHH
Confidence 445543 55667778899999999998765543
No 76
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=53.76 E-value=16 Score=26.66 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred cceeee-eccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHH
Q psy5544 45 PLVREI-TFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSE 87 (96)
Q Consensus 45 PLVREI-TFeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~ 87 (96)
+-|.+| |-++++++.+..-..+|.|....|-...+.|.++...
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~~~~f~~~A~~ 60 (361)
T 3uem_A 17 EFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEA 60 (361)
T ss_dssp SSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHHHHHHHHHHHH
T ss_pred ccceecCCHHHHHHHHhcCCcEEEEEEcCCCchHHHHHHHHHhc
Confidence 567777 5588889888888899999998888999999877663
No 77
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=52.06 E-value=15 Score=24.14 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=38.0
Q ss_pred hhhccccceeeee---ccchhhhhhcCCceEEEeeCCCChhHHHHHHHHHHH
Q psy5544 39 TADKCVPLVREIT---FENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSE 87 (96)
Q Consensus 39 ~~~kCvPLVREIT---FeNaEELtEEgLPfLILF~~pdD~~s~k~F~~~V~~ 87 (96)
+.+++-|-+...+ -+.++++....-+.+|-|-...+-...+.|.++...
T Consensus 13 m~kq~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F~~~A~~ 64 (124)
T 2l4c_A 13 SSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQK 64 (124)
T ss_dssp SCCCSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTHHHHHHHHHHH
T ss_pred HHhccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChhHHHHHHHHHh
Confidence 4578888887743 455777787788889989888788889999877665
No 78
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=51.76 E-value=8.2 Score=24.96 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=25.3
Q ss_pred ceeeee-ccchhhhhhc--CCceEEEeeCCCChhHHH
Q psy5544 46 LVREIT-FENAEELTEE--GLPFLILFYAPGDTETIK 79 (96)
Q Consensus 46 LVREIT-FeNaEELtEE--gLPfLILF~~pdD~~s~k 79 (96)
-|.+|+ -++-+++... |.|.||.|+.|.-....+
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~ 49 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQ 49 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHH
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHH
Confidence 356676 5667777777 999999999987765443
No 79
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=50.15 E-value=8.2 Score=23.23 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=22.3
Q ss_pred eeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 49 EITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 49 EITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
.+|-+|-+++.+.|.|.||.|+.+.-....
T Consensus 13 ~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~ 42 (112)
T 1syr_A 13 VTSQAEFDSIISQNELVIVDFFAEWCGPCK 42 (112)
T ss_dssp ECSHHHHHHHHHHCSEEEEEEECTTCHHHH
T ss_pred ECCHHHHHHHHccCCeEEEEEECCCCHHHH
Confidence 344555666777899999999998776553
No 80
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=48.40 E-value=13 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=23.6
Q ss_pred eeeeeccchhhhhh------------cCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTE------------EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtE------------EgLPfLILF~~pdD~~s~ 78 (96)
|.++|=+|-++... .|.|.||.|+.+.-....
T Consensus 11 v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~ 54 (136)
T 2l5l_A 11 VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCK 54 (136)
T ss_dssp EEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHH
T ss_pred eEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHH
Confidence 56777677666554 579999999998766543
No 81
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=47.00 E-value=12 Score=22.05 Aligned_cols=32 Identities=19% Similarity=0.021 Sum_probs=22.2
Q ss_pred eeee-eccchhhhhhc----CCceEEEeeCCCChhHH
Q psy5544 47 VREI-TFENAEELTEE----GLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREI-TFeNaEELtEE----gLPfLILF~~pdD~~s~ 78 (96)
|.+| |-+|-+++... |.|.++.|+.+.-....
T Consensus 6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~ 42 (113)
T 1ti3_A 6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCK 42 (113)
T ss_dssp EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHH
T ss_pred eeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHH
Confidence 3445 55565565554 99999999998766553
No 82
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=46.70 E-value=17 Score=24.72 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=27.8
Q ss_pred eEEecCCCCCCCCcceeeecCCCCHHHHHHhhhhccccceeeee
Q psy5544 8 IIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREIT 51 (96)
Q Consensus 8 ~i~Fr~~~~~~~~~~~~f~G~~sn~~~l~~W~~~kCvPLVREIT 51 (96)
+++| +++... ..|.|.+ +.+.|.+|+.+..-+-|+|||
T Consensus 172 ~~~~-~~G~~~----~~~~G~~-~~~~l~~~i~~~l~~~~~~i~ 209 (210)
T 3apq_A 172 LFIF-RSGMAA----VKYNGDR-SKESLVAFAMQHVRSTVTELS 209 (210)
T ss_dssp EEEE-CTTSCC----EECCSCC-CHHHHHHHHHHHHHCCSSCC-
T ss_pred EEEE-ECCCce----eEecCCC-CHHHHHHHHHHhCcccceecC
Confidence 4566 444332 6688864 789999999999988888886
No 83
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=45.98 E-value=17 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=25.0
Q ss_pred ceeeeeccchhh-hhhcCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEE-LTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEE-LtEEgLPfLILF~~pdD~~s 77 (96)
.++.+|=+|-++ +...+.|.||.|+.|--...
T Consensus 13 ~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C 45 (222)
T 3dxb_A 13 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPC 45 (222)
T ss_dssp CCEECCTTTHHHHHTTCSSCEEEEEECTTCHHH
T ss_pred CceeCCHHHHHHHHHhcCCEEEEEEECCcCHHH
Confidence 466777777766 67789999999999887544
No 84
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=43.82 E-value=18 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=22.9
Q ss_pred ceeeeeccchhh-hhhcCC--ceEEEeeCCCCh
Q psy5544 46 LVREITFENAEE-LTEEGL--PFLILFYAPGDT 75 (96)
Q Consensus 46 LVREITFeNaEE-LtEEgL--PfLILF~~pdD~ 75 (96)
-|+|||=+|-.+ +++.+. |.++.||.|.--
T Consensus 4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~ 36 (118)
T 3evi_A 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIP 36 (118)
T ss_dssp SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSH
T ss_pred ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCCh
Confidence 578998777765 555554 999999998864
No 85
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=43.32 E-value=15 Score=22.45 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=22.6
Q ss_pred eeeeeccchhh-hhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEE-LTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEE-LtEEgLPfLILF~~pdD~~s~ 78 (96)
|.++|=+|-++ +.+.|.|.||.|+.+.-....
T Consensus 15 ~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~ 47 (119)
T 1w4v_A 15 FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCK 47 (119)
T ss_dssp EECCSHHHHHHHTTTCSSCEEEEEECTTCHHHH
T ss_pred EEecChhhHHHHHHcCCCcEEEEEECCCCHHHH
Confidence 44555555554 457899999999998876553
No 86
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=42.62 E-value=13 Score=23.52 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=24.4
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
|.+||-+|-+++... |.||.|+.+--..-.+
T Consensus 18 v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~ 48 (135)
T 3emx_A 18 LIYITPEEFRQLLQG--DAILAVYSKTCPHCHR 48 (135)
T ss_dssp EEECCHHHHHHHHTS--SEEEEEEETTCHHHHH
T ss_pred eeecCHHHHHHHhCC--cEEEEEECCcCHhhhH
Confidence 678888888888876 9999999987655433
No 87
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=42.49 E-value=16 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=21.7
Q ss_pred cceeeeeccchhhhhhc--CCceEEEeeCC
Q psy5544 45 PLVREITFENAEELTEE--GLPFLILFYAP 72 (96)
Q Consensus 45 PLVREITFeNaEELtEE--gLPfLILF~~p 72 (96)
..|.-.|.++-+++..+ |.|.+|.|+.+
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~ 34 (123)
T 1wou_A 5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGS 34 (123)
T ss_dssp EEEEEESHHHHHHHHHTTTTSEEEEEEECC
T ss_pred eeEEeccHHHHHHHHHHhCCCEEEEEEEcc
Confidence 34556677777776666 99999999999
No 88
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=41.56 E-value=15 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.002 Sum_probs=22.5
Q ss_pred eeee-eccchhhhhhc----CCceEEEeeCCCChhHHH
Q psy5544 47 VREI-TFENAEELTEE----GLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREI-TFeNaEELtEE----gLPfLILF~~pdD~~s~k 79 (96)
|.+| |-++-+++..+ |.|.||.|+.+.-....+
T Consensus 8 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~ 45 (118)
T 2vm1_A 8 VIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRV 45 (118)
T ss_dssp EEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHH
T ss_pred eEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHH
Confidence 4455 35555555554 999999999987765543
No 89
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=41.40 E-value=11 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=20.6
Q ss_pred eccchhhhhhcCCceEEEeeCCCChhHHH
Q psy5544 51 TFENAEELTEEGLPFLILFYAPGDTETIK 79 (96)
Q Consensus 51 TFeNaEELtEEgLPfLILF~~pdD~~s~k 79 (96)
|-+|-+++..+|.|.||.|+.|.-....+
T Consensus 7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~ 35 (105)
T 4euy_A 7 TIEELATYIEEQQLVLLFIKTENCGVCDV 35 (105)
T ss_dssp ---CCSSSTTCSSEEEEEEEESSCHHHHH
T ss_pred CHHHHHHHHhcCCCEEEEEeCCCCcchHH
Confidence 45666677788999999999998765433
No 90
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=40.85 E-value=16 Score=24.25 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=28.8
Q ss_pred cccee-eeeccchhhhhhc----CCceEEEeeCCCC------hhHHHHHHHHHHHHh
Q psy5544 44 VPLVR-EITFENAEELTEE----GLPFLILFYAPGD------TETIKLFKSIVSEQL 89 (96)
Q Consensus 44 vPLVR-EITFeNaEELtEE----gLPfLILF~~pdD------~~s~k~F~~~V~~~L 89 (96)
++++| -|+-++...+... |.|.||||.+-.- ..+...|...+.+-|
T Consensus 53 ~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l 109 (116)
T 3dml_A 53 APVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLI 109 (116)
T ss_dssp SCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCCHHHHHHHHHHHH
Confidence 66666 5555555566664 9999999984321 123566766666544
No 91
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.80 E-value=15 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=23.6
Q ss_pred ceeeeeccchhhhhh---cCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELTE---EGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELtE---EgLPfLILF~~pdD~~s 77 (96)
.|.+||-+|-++... .|.|.||.|+.|---..
T Consensus 11 ~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C 45 (135)
T 2dbc_A 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMC 45 (135)
T ss_dssp SCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHH
T ss_pred ceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHH
Confidence 477888777776443 34799999999877554
No 92
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=39.39 E-value=17 Score=22.58 Aligned_cols=32 Identities=19% Similarity=-0.008 Sum_probs=21.1
Q ss_pred eeee-eccchhhhhh----cCCceEEEeeCCCChhHH
Q psy5544 47 VREI-TFENAEELTE----EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREI-TFeNaEELtE----EgLPfLILF~~pdD~~s~ 78 (96)
|.+| |-++-++... .|.|.||.|+.+.-....
T Consensus 18 v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~ 54 (124)
T 1xfl_A 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCR 54 (124)
T ss_dssp CEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHH
T ss_pred EEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHH
Confidence 4455 4455555444 499999999998765543
No 93
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=37.47 E-value=17 Score=21.80 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=20.8
Q ss_pred eccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 51 TFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 51 TFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
|-+|-+++..+|.|.||.|+.+.-....
T Consensus 13 ~~~~f~~~~~~~k~vlv~f~a~wC~~C~ 40 (109)
T 3f3q_A 13 TASEFDSAIAQDKLVVVDFYATWCGPCK 40 (109)
T ss_dssp SHHHHHHHTTSSSCEEEEEECTTCHHHH
T ss_pred CHHHHHHHHhcCCEEEEEEECCcCHhHH
Confidence 3445556777899999999999875543
No 94
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=35.96 E-value=20 Score=21.82 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=20.5
Q ss_pred eeccchhhhhh--cCCceEEEeeCCCChhHH
Q psy5544 50 ITFENAEELTE--EGLPFLILFYAPGDTETI 78 (96)
Q Consensus 50 ITFeNaEELtE--EgLPfLILF~~pdD~~s~ 78 (96)
.|=+|-+++.. .|.|.||.|+.+.-....
T Consensus 17 ~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~ 47 (116)
T 3qfa_C 17 ESKTAFQEALDAAGDKLVVVDFSATWCGPSK 47 (116)
T ss_dssp CCHHHHHHHHHHHTTSCEEEEEECTTCHHHH
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCCHHHH
Confidence 34445555555 799999999999775543
No 95
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=34.87 E-value=20 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=19.6
Q ss_pred ceeeee-ccchhhhh-h-cCCceEEEeeCCCChhH
Q psy5544 46 LVREIT-FENAEELT-E-EGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREIT-FeNaEELt-E-EgLPfLILF~~pdD~~s 77 (96)
||.+|+ -+|-+++. + .+.|.||-||.|---..
T Consensus 1 MV~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C 35 (105)
T 3zzx_A 1 MVYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPC 35 (105)
T ss_dssp CCEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHH
T ss_pred CeEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCc
Confidence 567775 23333333 3 26889999999865433
No 96
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=33.51 E-value=19 Score=21.97 Aligned_cols=24 Identities=21% Similarity=0.193 Sum_probs=18.1
Q ss_pred chhhhhhcCCceEEEeeCCCChhH
Q psy5544 54 NAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 54 NaEELtEEgLPfLILF~~pdD~~s 77 (96)
+-+++.+.|.|.||.|+.+.-...
T Consensus 22 ~~~~~~~~~k~vvv~F~a~wC~~C 45 (114)
T 2oe3_A 22 EFRNLIKQNDKLVIDFYATWCGPC 45 (114)
T ss_dssp HHHHHHHHCSEEEEEEECTTCHHH
T ss_pred HHHHHHhCCCEEEEEEECCCCHHH
Confidence 345666789999999999876544
No 97
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=32.99 E-value=23 Score=24.00 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=26.7
Q ss_pred ceeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 46 LVREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
-|.++|=+|-++....|.|.||.|+.+.-....
T Consensus 98 ~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~ 130 (210)
T 3apq_A 98 EIITLERREFDAAVNSGELWFVNFYSPGCSHCH 130 (210)
T ss_dssp TSEECCHHHHHHHHHHSCCEEEEEECTTCHHHH
T ss_pred ceEEecHHHHHHHHccCCcEEEEEeCCCChhHH
Confidence 356778888888889999999999999865543
No 98
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=32.19 E-value=28 Score=25.38 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=27.8
Q ss_pred eeeeeccchhhhhhcCCceEEEeeC--CCChhHHHHHHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYA--PGDTETIKLFKS 83 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~--pdD~~s~k~F~~ 83 (96)
|.++|=+|-+++...+.|.|+.||. |--- -...|.+
T Consensus 7 v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg-l~P~~e~ 44 (240)
T 2qc7_A 7 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE-KQDEFKR 44 (240)
T ss_dssp CEECCTTHHHHHGGGCSEEEEEECCSSCCSH-HHHHHHH
T ss_pred ceECCHHHHHHHHcCCCCEEEEEeCCCCCCc-chHHHHH
Confidence 6678888888888888999999999 7665 4445543
No 99
>3zth_A STU0660; DNA binding, crispr, CAS; 2.40A {Streptococcus thermophilus}
Probab=31.80 E-value=34 Score=27.63 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=26.3
Q ss_pred hhhcCCceEEEeeCCCChhHHHHHHHHHHH
Q psy5544 58 LTEEGLPFLILFYAPGDTETIKLFKSIVSE 87 (96)
Q Consensus 58 LtEEgLPfLILF~~pdD~~s~k~F~~~V~~ 87 (96)
|.+.+.|.|++|.++||.-+-+.|..+++.
T Consensus 192 ls~~t~k~LLV~kNiD~~Ls~~sy~~i~~~ 221 (350)
T 3zth_A 192 LSQTTEKYLIVLKNIDGFISEESYTIFYRQ 221 (350)
T ss_dssp HTTCCSCEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HhcCCCcEEEEEeCHHHhhcHHHHHHHHHH
Confidence 467899999999999999999999887763
No 100
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=31.79 E-value=29 Score=20.78 Aligned_cols=31 Identities=10% Similarity=-0.173 Sum_probs=20.9
Q ss_pred eeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 47 VREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 47 VREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
+..+|-+|- +...++.|.|+.|+.+.-....
T Consensus 5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~ 35 (110)
T 2l6c_A 5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCK 35 (110)
T ss_dssp SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHH
T ss_pred eecCCHHHH-HHHHcCCCEEEEEECCCCHhHH
Confidence 345556666 3445678999999998765443
No 101
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=30.28 E-value=38 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=26.9
Q ss_pred ceeeeeccchhhhhhcCCceEEEee--CCCChhHHHHH
Q psy5544 46 LVREITFENAEELTEEGLPFLILFY--APGDTETIKLF 81 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~--~pdD~~s~k~F 81 (96)
.|.++|=+|-+++...+.|.|+.|| .|--- -...|
T Consensus 17 ~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg-l~P~~ 53 (248)
T 2c0g_A 17 GCVDLDELSFEKTVERFPYSVVKFDIASPYGE-KHEAF 53 (248)
T ss_dssp TCEECCTTTHHHHHTTSSEEEEEEEESSCCSH-HHHHH
T ss_pred CcEECCHHHHHHHHhcCCCEEEEEECCCCCCc-cHHHH
Confidence 3678888888888888999999999 77654 33344
No 102
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=29.12 E-value=42 Score=21.04 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=22.1
Q ss_pred eeeee-ccchhhhhhc--CCceEEEeeCCCChhHHH
Q psy5544 47 VREIT-FENAEELTEE--GLPFLILFYAPGDTETIK 79 (96)
Q Consensus 47 VREIT-FeNaEELtEE--gLPfLILF~~pdD~~s~k 79 (96)
|.+|| -++-+++... |.|.||.|+.+.-....+
T Consensus 22 v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~ 57 (133)
T 3cxg_A 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNK 57 (133)
T ss_dssp EEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHH
T ss_pred EEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHH
Confidence 45565 3555665554 679999999987655443
No 103
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=26.32 E-value=49 Score=22.79 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=25.0
Q ss_pred ceeeeeccchhhhh-hcCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELT-EEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELt-EEgLPfLILF~~pdD~~s 77 (96)
-|.+||-+|-+++. +.+.|.||.||.+--...
T Consensus 13 ~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C 45 (244)
T 3q6o_A 13 PLTLLQADTVRGAVLGSRSAWAVEFFASWCGHC 45 (244)
T ss_dssp SSEEECTTTHHHHHSSCSSEEEEEEECTTCHHH
T ss_pred CceeCChhhHHHHHhhCCCeEEEEEECCcCHHH
Confidence 37788888887755 567999999999876544
No 104
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=25.94 E-value=36 Score=24.94 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=24.7
Q ss_pred ceeee-eccchhhhhhc---CCceEEEeeCCCChhH
Q psy5544 46 LVREI-TFENAEELTEE---GLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREI-TFeNaEELtEE---gLPfLILF~~pdD~~s 77 (96)
-|.+| |-+|-.+.+.. |.|.||.||.|.-...
T Consensus 113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~C 148 (245)
T 1a0r_P 113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGC 148 (245)
T ss_dssp SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTH
T ss_pred eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHH
Confidence 57888 67887777753 8999999999876544
No 105
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=25.57 E-value=53 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=17.0
Q ss_pred hhhhcCCceEEEeeCCCChhHH
Q psy5544 57 ELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 57 ELtEEgLPfLILF~~pdD~~s~ 78 (96)
-|-|||+|+-+-.++.+|....
T Consensus 28 GIEEEGip~~v~~~~~~d~~~l 49 (125)
T 2d0o_B 28 GIEEEGIPFRLQHHPAGEVVDS 49 (125)
T ss_dssp HHHHTTCCEEEEEESSCCHHHH
T ss_pred hhcccCCCeEEEecCCCCHHHH
Confidence 5779999999877777776543
No 106
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=24.67 E-value=36 Score=23.98 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=25.4
Q ss_pred ceeee-eccchhhhhhc---CCceEEEeeCCCChhHHH
Q psy5544 46 LVREI-TFENAEELTEE---GLPFLILFYAPGDTETIK 79 (96)
Q Consensus 46 LVREI-TFeNaEELtEE---gLPfLILF~~pdD~~s~k 79 (96)
.|.+| |-+|-.+++.. |.|.||.||.|.-.....
T Consensus 100 ~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~ 137 (217)
T 2trc_P 100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDA 137 (217)
T ss_dssp SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHH
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHH
Confidence 47888 77777776654 389999999988765543
No 107
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=24.55 E-value=22 Score=21.39 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=17.9
Q ss_pred eeee-eccchhhhhh----cCCceEEEeeCCCC
Q psy5544 47 VREI-TFENAEELTE----EGLPFLILFYAPGD 74 (96)
Q Consensus 47 VREI-TFeNaEELtE----EgLPfLILF~~pdD 74 (96)
|-+| |-++-++... .|.|.||.|+.+.-
T Consensus 16 ~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C 48 (130)
T 1wmj_A 16 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWC 48 (130)
T ss_dssp SBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSC
T ss_pred eEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCC
Confidence 4445 3344444444 48999999998653
No 108
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.47 E-value=50 Score=19.90 Aligned_cols=30 Identities=47% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 46 LVREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 46 LVREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
-|.+||=+|-+++... +.||.|+.+.-...
T Consensus 8 ~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C 37 (126)
T 1x5e_A 8 NVRVITDENWRELLEG--DWMIEFYAPWCPAC 37 (126)
T ss_dssp SEEECCTTTHHHHTSS--EEEEEEECSSCHHH
T ss_pred ccEEecHHHHHHHhCC--CEEEEEECCCCHHH
Confidence 4677888888877654 49999999876554
No 109
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=23.95 E-value=40 Score=20.65 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=22.7
Q ss_pred ccceeeeeccchhhhhhcCCceEEEeeCCCChhHH
Q psy5544 44 VPLVREITFENAEELTEEGLPFLILFYAPGDTETI 78 (96)
Q Consensus 44 vPLVREITFeNaEELtEEgLPfLILF~~pdD~~s~ 78 (96)
+|-+....=+..+.....|.|.||.|+.+.-....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~ 58 (128)
T 3ul3_B 24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACT 58 (128)
T ss_dssp --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHH
T ss_pred CCccccCCccHHHHHHccCCEEEEEEECCCCHHHH
Confidence 45554444444555667899999999999876543
No 110
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=23.06 E-value=41 Score=20.88 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=12.6
Q ss_pred cceeeeeccchhhhhhcCCceEEEeeCCCChhH
Q psy5544 45 PLVREITFENAEELTEEGLPFLILFYAPGDTET 77 (96)
Q Consensus 45 PLVREITFeNaEELtEEgLPfLILF~~pdD~~s 77 (96)
+-|.+||=+|-+++..++-+.|+.|+.+.-...
T Consensus 33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C 65 (140)
T 1v98_A 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPC 65 (140)
T ss_dssp ----------------CCCEEEEEEECTTCHHH
T ss_pred CccccCCHHHHHHHHHcCCCEEEEEECCCCHHH
Confidence 456788877777765444449999999987654
No 111
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=20.53 E-value=68 Score=20.56 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=18.8
Q ss_pred eeccchhhhh----hcCCceEEEeeCCCChhH
Q psy5544 50 ITFENAEELT----EEGLPFLILFYAPGDTET 77 (96)
Q Consensus 50 ITFeNaEELt----EEgLPfLILF~~pdD~~s 77 (96)
+++.+-++.. .+|.|.||-|+.+-----
T Consensus 31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C 62 (172)
T 3f9u_A 31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNC 62 (172)
T ss_dssp CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHH
T ss_pred cchhhHHHHHHHHHHcCCeEEEEEECCCCHHH
Confidence 3444444433 679999999999865444
No 112
>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1
Probab=20.18 E-value=1.4e+02 Score=18.25 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCCHHHHHHhhhhccccceeeeeccchhhhhhcCCceEEEeeCCCCh
Q psy5544 29 LSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDT 75 (96)
Q Consensus 29 ~sn~~~l~~W~~~kCvPLVREITFeNaEELtEEgLPfLILF~~pdD~ 75 (96)
..|.+.+.+++.++-++.+.+ .|.-.+..|++||-.
T Consensus 85 v~d~~~~~~~l~~~G~~~~~~-----------~g~~~~~~~~DPdG~ 120 (144)
T 2c21_A 85 VEDVKELVADMRKHDVPIDYE-----------DESGFMAFVVDPDGY 120 (144)
T ss_dssp ESCHHHHHHHHHHTTCCEEEE-----------CSSSSEEEEECTTSC
T ss_pred eCCHHHHHHHHHHCCCEEecc-----------CCcEEEEEEECCCCC
Confidence 458899999999998887765 465566688898753
Done!