RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5544
(96 letters)
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 69.2 bits (169), Expect = 1e-15
Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 1 MHPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
G+ II P + Y G ++ +D T W DKCVPLVREITFEN EELTE
Sbjct: 178 ERYSGDNIIYKPPGHS---APDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTE 234
Query: 61 EGLPFLILFYAPGDTETIKLFKSIVSEQLLGEKH 94
EGLPFLILF+ DTE++++F++ V+ QL+ EK
Sbjct: 235 EGLPFLILFHMKEDTESLEIFQNEVARQLISEKG 268
Score = 25.3 bits (55), Expect = 3.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 47 VREITFENAEELTEEGLPFLILFYAP 72
+ + EN +E+ L+ FYA
Sbjct: 7 ITSLDTENIDEILNNADVALVNFYAD 32
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 51.9 bits (124), Expect = 2e-09
Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 1 MHPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ I + + EE T ++ +E + + +R++ E+ E E
Sbjct: 188 LTLKLNEIDFYEAFM----EEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWE 243
Query: 61 EGLP--FLILFYAPGDTETIKLFKSI 84
+ + ++ F D + + + +
Sbjct: 244 DDMDGIHIVAFAEEADPDGYEFLEIL 269
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 48.5 bits (115), Expect = 3e-08
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 1 MHPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTE 60
+ + + P ++E +E + + P +R + E+ E E
Sbjct: 186 LSLKMNEVDFYEPF----MDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWE 241
Query: 61 EGLP--FLILFYAPGDTETIKLFKSI 84
+ L ++ F D + + + +
Sbjct: 242 DDLNGIHIVAFAERSDPDGYEFLEIL 267
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 45.6 bits (108), Expect = 1e-07
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 44 VPLVREITFENAEELTEEGLPFLILFYAPGD 74
PL+ EI E + G+P +F +
Sbjct: 5 SPLIGEIGPETYSDYMSAGIPLAYIFAETAE 35
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 42.4 bits (99), Expect = 3e-06
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 1 MHPPGEPIIVFRPDVTTPL--EEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEEL 58
GE II+FRP T ++ Y + K + + + +T +N + +
Sbjct: 68 YDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLI 127
Query: 59 TEEGLPFLILFYAPGDTETIKLFKSIVS 86
+G LI +Y + K +
Sbjct: 128 --QGKDLLIAYYDVDYEKNAKGSNYWRN 153
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 42.0 bits (98), Expect = 5e-06
Identities = 10/93 (10%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 1 MHPPGEPIIVFRPDVTTPLEEHETYRGNLSA---YDETKVWTADKCVPLVREITFENAEE 57
+ +++ +P+ E + ++ K + +PLV N +
Sbjct: 69 LKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAK 128
Query: 58 LTEEGLPFLILFYAPGDTETIKLFKSIVSEQLL 90
P ++++Y+ + + ++L
Sbjct: 129 R-YSKRPLVVVYYSVDFSFDYRTATQFWRNKVL 160
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 30.8 bits (69), Expect = 0.040
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 2 HPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEE 61
+ +++F+ E + G ++ + + +PLV E T + A ++
Sbjct: 79 QLDKDGVVLFKKFD----EGRNNFEGEVTK-ENLLDFIKHNQLPLVIEFTEQTAPKIFGG 133
Query: 62 GLPFLILFYAPGDTETIKLFKSIVSE 87
+ IL + P S
Sbjct: 134 EIKTHILLFLPKSVSDYDGKLSNFKT 159
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 30.9 bits (69), Expect = 0.053
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 5 GEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGL- 63
P I F P ++ ++ +Y G + W ++T + E +G
Sbjct: 617 RYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKT 676
Query: 64 PFLILFYAP 72
+++ FYAP
Sbjct: 677 HWVVDFYAP 685
Score = 29.3 bits (65), Expect = 0.17
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 20 EEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAP 72
+E+E + G YD + + V + +N +E P+L+ F+AP
Sbjct: 416 KEYEIHHGKKILYDILA-FAKESVNSHVTTLGPQNFPASDKE--PWLVDFFAP 465
Score = 27.4 bits (60), Expect = 0.84
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 1/53 (1%)
Query: 20 EEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAP 72
Y G+ S + + V E++ N E + +
Sbjct: 198 MAAVKYNGDRSK-ESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLIT 249
Score = 24.7 bits (53), Expect = 6.4
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 21 EHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGL---PFLILFYAPGDTET 77
Y G+ SA + + D P V +T EL ++ +++ FY+P +
Sbjct: 520 SIHEYEGHHSAEQILE-FIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPS 578
Query: 78 IKL 80
L
Sbjct: 579 QVL 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.86
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 45 PLVREITFENAEELTEEGLPFLIL 68
+++ + A+ ++ F IL
Sbjct: 1640 KAAQDV-WNRADNHFKDTYGFSIL 1662
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 26.1 bits (58), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 9 IVF--RPDVTTPLEE 21
+VF RPD TP+EE
Sbjct: 154 VVFANRPDPNTPMEE 168
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 26.0 bits (58), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 9 IVF--RPDVTTPLEE 21
+VF RPD TP+EE
Sbjct: 120 VVFANRPDPNTPMEE 134
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 26.0 bits (58), Expect = 2.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 12 RPDVTTPLEE 21
R D TP+EE
Sbjct: 139 RVDENTPMEE 148
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 25.6 bits (57), Expect = 2.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 12 RPDVTTPLEE 21
RPD TPL+E
Sbjct: 160 RPDPETPLKE 169
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 25.4 bits (55), Expect = 2.6
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 44 VPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSE 87
+PLV E T + A ++ + IL + P S
Sbjct: 13 LPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKT 56
>2l25_A Uncharacterized protein; JCSG, structural genomics, PSI-biology,
protein structure in joint center for structural
genomics; NMR {Bordetella bronchiseptica}
Length = 141
Score = 25.5 bits (55), Expect = 2.8
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 34 ETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAPGDTETIKL 80
E ++ K + ++N + +L + P T +
Sbjct: 12 EKRLSDWAKARTPALPVAWQNTKFTPPAAGVYLRAYVMPAATISRDA 58
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 25.3 bits (56), Expect = 3.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 5 GEPIIVFRPDVTTPLEEHETYR 26
GE +++ D PLE E +
Sbjct: 33 GEAMMLLVADRPGPLEHAEAFH 54
>1b8k_A NT3, protein (neurotrophin-3); complex (growth factor/growth
factor), hormone/growth factor complex; 2.15A {Homo
sapiens} SCOP: g.17.1.3 PDB: 1nt3_A 3buk_A* 1bnd_B
Length = 119
Score = 25.1 bits (54), Expect = 3.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 21 EHETYRGNLSAYDETKVWTADK 42
EH+++RG S D +W DK
Sbjct: 3 EHKSHRGEYSVCDSESLWVTDK 24
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 24.6 bits (54), Expect = 4.0
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 47 VREITFENAEELTEEGLPFLILFYAP 72
+R+IT E E ++ F+
Sbjct: 4 IRDITTEAGMAHFEGLSDAIVFFHKN 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 5.2
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 10 VFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILF 69
VF P P ++ D V +K + + +E T +P + L
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLH--KYSLVEKQPKEST-ISIPSIYLE 434
Query: 70 YAPGDTETIKLFKSIV 85
L +SIV
Sbjct: 435 LKVKLENEYALHRSIV 450
>3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol,
hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum}
Length = 516
Score = 24.3 bits (53), Expect = 8.1
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 17 TPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFE-NAEELTEEGLPFLILFYAPGDT 75
P+ E +T +L + + +R + + G +
Sbjct: 355 QPITELDTISTSLQILANQTITPGQTLLSSIRGTALDVRVAFYPDAGSVLSLAVRKGASE 414
Query: 76 ETI 78
+T+
Sbjct: 415 QTV 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.410
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,494,622
Number of extensions: 76431
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 31
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)