RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5544
         (96 letters)



>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI
          {Fungi (Humicola insolens) [TaxId: 34413]}
          Length = 133

 Score = 44.9 bits (106), Expect = 5e-08
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 44 VPLVREITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQLLGEKH 94
           PL+ EI  E   +    G+P   +F      E  K     +      ++ 
Sbjct: 5  SPLIGEIGPETYSDYMSAGIPLAYIFAE--TAEERKELSDKLKPIAEAQRG 53


>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 110

 Score = 42.9 bits (101), Expect = 2e-07
 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 1   MHPPGEPIIVFRPDVTTPLEEHETYRGNLSAYDETKVWTADKCVPLVREITFENA 55
                + +++F+       +E           +    +     +PLV E T + A
Sbjct: 61  YQLDKDGVVLFKKF-----DEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110


>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 125

 Score = 34.9 bits (80), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 49 EITFENAEELTEEGLPFLILFYAPGDTETIKLFKSIVSEQLLGEKH 94
          EI      +  E GLP   LFY     E ++ +K + +E     + 
Sbjct: 4  EIDGSVFAQYVESGLPLGYLFYND--EEELEEYKPLFTELAKKNRG 47


>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 120

 Score = 26.0 bits (56), Expect = 0.58
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 47 VREITFENAEELTEEGLPFLILFYAP 72
          V  +   N  E        L+ FYAP
Sbjct: 9  VLVLRKSNFAEALAAHKYLLVEFYAP 34


>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
          1167]}
          Length = 108

 Score = 23.6 bits (50), Expect = 3.9
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 47 VREITFEN-AEELTEEGLPFLILFYAP 72
          V  IT      E+ +   P L+ F+A 
Sbjct: 4  VITITDAEFESEVLKAEQPVLVYFWAS 30


>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS
           coronavirus [TaxId: 227859]}
          Length = 155

 Score = 23.7 bits (51), Expect = 4.7
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 24  TYRGNLSAYDETKVWTADKCVPLVREITFENAEELT 59
           TY   L  ++  +V  AD  +  + EI  +N+  L 
Sbjct: 111 TYASAL--WEIQQVVDADSKIVQLSEINMDNSPNLA 144


>d1hcfa_ g.17.1.3 (A:) Neurotrophin 4, NT4 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 127

 Score = 23.3 bits (50), Expect = 5.1
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 25 YRGNLSAYDETKVWTADK 42
           RG L+  D    W  D+
Sbjct: 10 RRGELAVCDAVSGWVTDR 27


>d1laja_ b.121.4.5 (A:) Cucumovirus coat protein {TAV (Tomato
           aspermy virus) [TaxId: 12315]}
          Length = 174

 Score = 23.3 bits (50), Expect = 6.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 26  RGNLSAYDETKVWTADKCVPLVREITFENAEELTEEGLPFLILFYAP 72
           R N S    + +W + + +     +T EN  +L  +GL  LI  + P
Sbjct: 67  RLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAVLIYQHVP 113


>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 119

 Score = 22.6 bits (47), Expect = 9.9
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 47 VREITFENAEELTEEGLPFLILFYAP 72
          V ++  ++  E  +     L  F+AP
Sbjct: 12 VVKLATDSFNEYIQSHDLVLAEFFAP 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,183
Number of extensions: 14895
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 15
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)