Query psy5547
Match_columns 714
No_of_seqs 501 out of 3981
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 20:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 3.7E-77 8E-82 589.5 36.0 378 317-702 141-560 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 6.2E-61 1.3E-65 540.9 43.3 371 320-703 132-548 (657)
3 KOG0101|consensus 100.0 3.4E-61 7.4E-66 516.6 32.3 378 317-699 112-531 (620)
4 KOG0102|consensus 100.0 1.9E-61 4.2E-66 496.0 25.9 374 320-706 132-551 (640)
5 PRK13410 molecular chaperone D 100.0 2.3E-58 4.9E-63 522.7 42.4 372 320-704 107-524 (668)
6 PRK13411 molecular chaperone D 100.0 6.5E-58 1.4E-62 520.9 42.8 375 321-706 106-526 (653)
7 KOG0100|consensus 100.0 2.1E-58 4.5E-63 456.4 31.7 298 1-300 346-644 (663)
8 PTZ00009 heat shock 70 kDa pro 100.0 5.6E-57 1.2E-61 513.9 43.0 380 320-704 112-534 (653)
9 PTZ00400 DnaK-type molecular c 100.0 5.9E-57 1.3E-61 513.1 41.7 374 320-706 146-565 (663)
10 PLN03184 chloroplast Hsp70; Pr 100.0 2E-56 4.2E-61 508.9 43.2 371 320-703 144-560 (673)
11 TIGR01991 HscA Fe-S protein as 100.0 3E-56 6.4E-61 503.2 44.0 361 322-699 103-505 (599)
12 PRK00290 dnaK molecular chaper 100.0 1E-55 2.2E-60 503.9 44.0 370 321-703 106-521 (627)
13 PRK05183 hscA chaperone protei 100.0 1.6E-55 3.5E-60 498.0 41.1 357 322-699 123-521 (616)
14 PRK01433 hscA chaperone protei 100.0 1.6E-55 3.4E-60 493.3 39.7 345 320-699 113-499 (595)
15 COG0443 DnaK Molecular chapero 100.0 6.6E-56 1.4E-60 493.2 35.0 368 321-701 93-502 (579)
16 TIGR02350 prok_dnaK chaperone 100.0 4.9E-55 1.1E-59 497.1 42.9 373 320-704 102-520 (595)
17 CHL00094 dnaK heat shock prote 100.0 9.6E-55 2.1E-59 494.2 43.2 370 321-703 108-523 (621)
18 PF00012 HSP70: Hsp70 protein; 100.0 2.5E-51 5.5E-56 471.9 42.3 376 320-705 107-527 (602)
19 PTZ00009 heat shock 70 kDa pro 100.0 2.6E-49 5.7E-54 451.0 35.3 327 2-328 317-652 (653)
20 KOG0101|consensus 100.0 4.3E-47 9.3E-52 407.9 26.1 298 1-300 318-615 (620)
21 KOG0103|consensus 100.0 2.6E-46 5.5E-51 396.5 30.3 376 318-696 107-511 (727)
22 PRK13411 molecular chaperone D 100.0 7.4E-45 1.6E-49 413.9 33.4 291 2-300 312-602 (653)
23 PRK13410 molecular chaperone D 100.0 1E-44 2.2E-49 411.4 32.0 292 2-299 313-607 (668)
24 PLN03184 chloroplast Hsp70; Pr 100.0 2.6E-43 5.7E-48 401.4 35.6 289 2-301 350-638 (673)
25 PTZ00400 DnaK-type molecular c 100.0 1.4E-43 3.1E-48 403.5 31.4 288 2-300 352-639 (663)
26 PTZ00186 heat shock 70 kDa pre 100.0 6.3E-43 1.4E-47 394.8 34.3 289 1-299 337-625 (657)
27 CHL00094 dnaK heat shock prote 100.0 5.3E-43 1.1E-47 398.1 33.2 287 2-299 313-599 (621)
28 PRK00290 dnaK molecular chaper 100.0 6.9E-43 1.5E-47 398.6 33.8 287 2-299 311-597 (627)
29 TIGR02350 prok_dnaK chaperone 100.0 9.4E-43 2E-47 396.5 32.7 286 2-298 309-594 (595)
30 TIGR01991 HscA Fe-S protein as 100.0 1.4E-41 2.9E-46 384.1 35.0 289 2-299 297-585 (599)
31 PRK05183 hscA chaperone protei 100.0 1.1E-41 2.3E-46 385.5 33.0 289 2-299 313-601 (616)
32 KOG0104|consensus 100.0 5.6E-42 1.2E-46 363.8 26.8 298 320-621 130-439 (902)
33 PRK01433 hscA chaperone protei 100.0 1.8E-40 3.8E-45 372.0 34.4 278 2-292 295-572 (595)
34 PRK11678 putative chaperone; P 100.0 4.8E-39 1E-43 348.2 32.1 258 323-594 124-448 (450)
35 KOG0103|consensus 100.0 6.5E-39 1.4E-43 340.3 26.8 297 2-308 318-655 (727)
36 PF00012 HSP70: Hsp70 protein; 100.0 5.2E-38 1.1E-42 361.5 33.8 289 2-299 313-602 (602)
37 KOG0102|consensus 100.0 2.4E-39 5.3E-44 333.3 18.8 292 1-300 337-628 (640)
38 COG0443 DnaK Molecular chapero 100.0 2.9E-34 6.2E-39 320.0 27.4 286 1-299 293-578 (579)
39 KOG0104|consensus 100.0 1.4E-33 3E-38 300.1 21.3 299 1-309 348-747 (902)
40 PRK13928 rod shape-determining 100.0 2.3E-30 5E-35 274.7 26.8 245 325-595 72-325 (336)
41 PRK13929 rod-share determining 100.0 2.3E-29 5E-34 266.0 26.5 240 327-592 75-325 (335)
42 PRK13927 rod shape-determining 100.0 1.8E-28 3.9E-33 260.6 25.2 239 329-594 78-325 (334)
43 TIGR00904 mreB cell shape dete 100.0 3.8E-27 8.1E-32 250.0 26.2 240 329-594 79-328 (333)
44 TIGR02529 EutJ ethanolamine ut 100.0 8.4E-28 1.8E-32 240.5 19.9 204 322-589 35-238 (239)
45 PRK13930 rod shape-determining 100.0 3.2E-27 7E-32 251.4 24.4 243 327-595 79-330 (335)
46 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 1.8E-25 3.8E-30 230.3 18.7 240 327-592 72-320 (326)
47 PRK15080 ethanolamine utilizat 99.9 1.5E-24 3.3E-29 221.0 22.5 202 326-591 66-267 (267)
48 COG1077 MreB Actin-like ATPase 99.9 1.4E-21 3.1E-26 192.6 21.4 243 327-595 79-333 (342)
49 TIGR01174 ftsA cell division p 99.8 3.1E-19 6.7E-24 192.2 16.1 202 350-590 150-371 (371)
50 PRK09472 ftsA cell division pr 99.8 6.1E-18 1.3E-22 184.2 20.1 205 351-593 159-388 (420)
51 COG0849 ftsA Cell division ATP 99.6 6.4E-15 1.4E-19 155.9 18.3 208 349-594 156-381 (418)
52 COG4820 EutJ Ethanolamine util 99.5 1.2E-14 2.5E-19 132.9 3.7 197 330-590 75-271 (277)
53 cd00012 ACTIN Actin; An ubiqui 99.4 3.3E-12 7.1E-17 138.0 15.9 218 348-593 95-347 (371)
54 PRK13917 plasmid segregation p 99.4 2.3E-11 5.1E-16 128.7 19.2 236 327-597 89-340 (344)
55 smart00268 ACTIN Actin. ACTIN 99.3 1.3E-11 2.9E-16 133.4 13.9 234 328-592 76-346 (373)
56 TIGR03739 PRTRC_D PRTRC system 99.3 1.1E-10 2.5E-15 122.8 17.3 209 347-591 101-318 (320)
57 PTZ00280 Actin-related protein 99.1 2.1E-09 4.7E-14 117.5 16.8 205 349-568 103-336 (414)
58 PF00022 Actin: Actin; InterP 99.1 1.6E-09 3.4E-14 118.3 15.2 239 333-592 76-366 (393)
59 TIGR01175 pilM type IV pilus a 99.0 7.1E-09 1.5E-13 111.1 16.4 170 351-572 136-309 (348)
60 PTZ00281 actin; Provisional 98.9 6.7E-09 1.4E-13 111.9 12.6 217 348-592 101-349 (376)
61 PTZ00004 actin-2; Provisional 98.9 1.5E-08 3.2E-13 109.4 15.3 217 348-592 101-351 (378)
62 PF06406 StbA: StbA protein; 98.9 1.5E-08 3.2E-13 106.5 14.3 227 324-588 69-316 (318)
63 PF11104 PilM_2: Type IV pilus 98.9 1E-08 2.2E-13 109.1 12.7 190 351-591 129-339 (340)
64 PTZ00466 actin-like protein; P 98.9 3.1E-08 6.8E-13 106.6 15.2 232 333-592 89-353 (380)
65 PTZ00452 actin; Provisional 98.9 5.2E-08 1.1E-12 104.8 16.9 232 333-592 82-348 (375)
66 PF07520 SrfB: Virulence facto 98.6 1.5E-05 3.3E-10 91.7 26.0 269 321-595 415-836 (1002)
67 KOG0679|consensus 98.6 1.8E-06 3.8E-11 87.8 16.3 114 327-458 86-202 (426)
68 TIGR00241 CoA_E_activ CoA-subs 98.6 2.7E-06 5.8E-11 86.3 17.0 168 381-589 74-247 (248)
69 PRK11678 putative chaperone; P 98.5 9.4E-08 2E-12 104.5 6.3 62 2-67 387-448 (450)
70 PRK13928 rod shape-determining 98.5 7.1E-08 1.5E-12 102.7 5.2 65 2-67 257-324 (336)
71 COG4972 PilM Tfp pilus assembl 98.3 2.1E-05 4.6E-10 79.0 14.9 159 363-568 150-311 (354)
72 COG5277 Actin and related prot 98.2 2.1E-05 4.4E-10 85.4 14.5 97 349-458 107-204 (444)
73 PRK13927 rod shape-determining 98.2 1.6E-06 3.5E-11 92.3 4.9 65 2-67 258-325 (334)
74 TIGR03192 benz_CoA_bzdQ benzoy 98.1 0.00016 3.5E-09 73.3 18.5 71 519-594 218-289 (293)
75 TIGR00904 mreB cell shape dete 98.1 4.1E-06 8.8E-11 89.1 5.2 64 2-66 261-327 (333)
76 COG1924 Activator of 2-hydroxy 98.0 0.00032 7E-09 72.1 17.5 154 410-594 232-391 (396)
77 TIGR02261 benz_CoA_red_D benzo 98.0 0.00039 8.5E-09 69.6 17.6 71 518-591 188-262 (262)
78 PRK13929 rod-share determining 98.0 6.5E-06 1.4E-10 87.4 4.6 62 2-64 260-324 (335)
79 PF08841 DDR: Diol dehydratase 97.9 0.00017 3.7E-09 70.8 13.5 190 371-590 105-328 (332)
80 TIGR03286 methan_mark_15 putat 97.9 0.0003 6.5E-09 74.2 16.0 46 546-592 357-402 (404)
81 PRK13930 rod shape-determining 97.9 7.8E-06 1.7E-10 87.1 4.3 65 2-67 262-329 (335)
82 KOG0797|consensus 97.9 6.3E-05 1.4E-09 79.2 10.1 122 320-456 194-321 (618)
83 PRK15080 ethanolamine utilizat 97.9 1.3E-05 2.7E-10 82.1 5.0 48 16-64 220-267 (267)
84 TIGR02259 benz_CoA_red_A benzo 97.8 0.00035 7.5E-09 72.9 14.3 179 380-591 249-432 (432)
85 PRK10719 eutA reactivating fac 97.8 1.8E-05 3.9E-10 84.4 4.4 108 324-449 59-183 (475)
86 TIGR02529 EutJ ethanolamine ut 97.7 1.9E-05 4.1E-10 79.4 3.1 49 13-62 190-238 (239)
87 COG4457 SrfB Uncharacterized p 97.7 0.012 2.6E-07 64.4 23.8 83 508-595 744-848 (1014)
88 KOG0676|consensus 97.6 0.00029 6.3E-09 73.9 10.1 208 330-568 82-314 (372)
89 PRK13317 pantothenate kinase; 97.3 0.005 1.1E-07 63.0 13.7 49 544-592 222-273 (277)
90 PRK09472 ftsA cell division pr 97.2 0.00035 7.5E-09 76.6 5.5 64 2-66 313-388 (420)
91 KOG0677|consensus 97.0 0.02 4.4E-07 55.6 13.7 238 333-597 83-365 (389)
92 TIGR01174 ftsA cell division p 96.9 0.00056 1.2E-08 73.9 3.4 60 2-63 298-371 (371)
93 PF02782 FGGY_C: FGGY family o 96.8 0.0022 4.8E-08 62.6 6.0 76 516-593 120-196 (198)
94 KOG0680|consensus 96.4 0.084 1.8E-06 53.3 13.9 104 348-456 93-198 (400)
95 PRK15027 xylulokinase; Provisi 96.0 0.017 3.7E-07 64.9 8.0 79 518-597 360-438 (484)
96 TIGR01315 5C_CHO_kinase FGGY-f 96.0 0.019 4.1E-07 65.4 8.4 84 512-597 411-494 (541)
97 PLN02669 xylulokinase 95.9 0.023 5E-07 64.6 8.4 72 519-593 421-492 (556)
98 KOG2517|consensus 95.8 0.12 2.6E-06 56.6 12.7 80 516-597 385-465 (516)
99 PF02782 FGGY_C: FGGY family o 95.6 0.02 4.4E-07 55.8 5.8 47 18-66 150-196 (198)
100 PF01869 BcrAD_BadFG: BadF/Bad 95.5 0.8 1.7E-05 47.0 17.5 71 518-591 197-271 (271)
101 TIGR00555 panK_eukar pantothen 95.3 0.23 5.1E-06 50.6 12.3 47 543-589 229-278 (279)
102 PRK04123 ribulokinase; Provisi 95.3 0.041 8.9E-07 62.8 7.8 78 518-597 412-490 (548)
103 PRK00047 glpK glycerol kinase; 95.3 0.047 1E-06 61.5 8.0 79 517-597 375-454 (498)
104 PTZ00294 glycerol kinase-like 95.2 0.049 1.1E-06 61.4 8.0 78 518-597 379-457 (504)
105 TIGR01234 L-ribulokinase L-rib 95.2 0.049 1.1E-06 61.9 8.0 77 519-597 410-487 (536)
106 TIGR01312 XylB D-xylulose kina 95.2 0.054 1.2E-06 60.8 8.1 80 516-597 361-441 (481)
107 TIGR01311 glycerol_kin glycero 95.1 0.051 1.1E-06 61.1 7.6 79 517-597 371-450 (493)
108 PRK10331 L-fuculokinase; Provi 95.0 0.06 1.3E-06 60.2 7.8 78 518-597 362-440 (470)
109 TIGR02628 fuculo_kin_coli L-fu 95.0 0.059 1.3E-06 60.1 7.7 79 517-597 365-444 (465)
110 TIGR01314 gntK_FGGY gluconate 94.9 0.068 1.5E-06 60.3 7.9 79 517-597 373-452 (505)
111 PLN02295 glycerol kinase 94.8 0.072 1.6E-06 60.2 7.8 80 516-597 378-463 (512)
112 PF14450 FtsA: Cell division p 94.7 0.09 2E-06 46.6 6.5 49 409-457 1-54 (120)
113 PRK10939 autoinducer-2 (AI-2) 94.7 0.08 1.7E-06 60.0 7.7 78 518-597 382-460 (520)
114 TIGR02627 rhamnulo_kin rhamnul 94.6 0.079 1.7E-06 59.0 7.4 80 512-597 357-437 (454)
115 PF01968 Hydantoinase_A: Hydan 94.6 0.12 2.6E-06 53.6 8.2 68 519-589 216-283 (290)
116 PRK15027 xylulokinase; Provisi 94.6 0.063 1.4E-06 60.3 6.6 59 6-68 378-436 (484)
117 PRK10640 rhaB rhamnulokinase; 94.0 0.12 2.7E-06 57.6 7.3 76 519-597 349-425 (471)
118 PLN02669 xylulokinase 94.0 0.11 2.3E-06 59.3 6.8 49 16-66 444-492 (556)
119 COG1069 AraB Ribulose kinase [ 93.8 0.78 1.7E-05 50.2 12.3 220 365-597 232-482 (544)
120 TIGR03192 benz_CoA_bzdQ benzoy 93.5 0.12 2.6E-06 52.8 5.4 48 19-67 241-289 (293)
121 KOG2531|consensus 93.3 0.25 5.5E-06 52.4 7.5 57 535-593 433-489 (545)
122 KOG0681|consensus 93.3 0.083 1.8E-06 56.9 4.0 50 545-594 559-615 (645)
123 PRK04123 ribulokinase; Provisi 93.1 0.16 3.5E-06 58.0 6.4 59 4-67 428-487 (548)
124 PLN02295 glycerol kinase 93.1 0.16 3.5E-06 57.4 6.3 52 15-68 410-461 (512)
125 COG1070 XylB Sugar (pentulose 93.1 0.27 5.9E-06 55.4 8.1 52 543-595 400-451 (502)
126 PRK00047 glpK glycerol kinase; 92.9 0.18 3.9E-06 56.9 6.3 58 6-68 394-452 (498)
127 TIGR00241 CoA_E_activ CoA-subs 92.9 0.11 2.5E-06 52.5 4.3 46 17-63 202-248 (248)
128 TIGR01311 glycerol_kin glycero 92.9 0.18 3.9E-06 56.7 6.3 50 17-68 399-448 (493)
129 TIGR01234 L-ribulokinase L-rib 92.8 0.2 4.3E-06 57.0 6.5 61 4-69 425-486 (536)
130 PF06723 MreB_Mbl: MreB/Mbl pr 92.8 0.065 1.4E-06 56.1 2.3 46 19-65 275-320 (326)
131 TIGR02261 benz_CoA_red_D benzo 92.5 0.26 5.5E-06 49.7 6.1 45 20-64 214-262 (262)
132 PRK13917 plasmid segregation p 92.5 0.15 3.2E-06 54.4 4.6 51 15-69 289-339 (344)
133 TIGR02628 fuculo_kin_coli L-fu 92.5 0.22 4.8E-06 55.5 6.3 59 6-68 384-442 (465)
134 TIGR02259 benz_CoA_red_A benzo 92.4 0.24 5.1E-06 52.3 5.8 46 19-64 383-432 (432)
135 PTZ00294 glycerol kinase-like 92.4 0.24 5.2E-06 55.9 6.5 50 18-69 407-456 (504)
136 TIGR01312 XylB D-xylulose kina 92.3 0.19 4.1E-06 56.5 5.5 51 17-69 390-440 (481)
137 TIGR01315 5C_CHO_kinase FGGY-f 92.2 0.23 4.9E-06 56.6 6.0 60 4-68 433-492 (541)
138 KOG2531|consensus 91.9 0.29 6.3E-06 51.9 5.7 54 11-66 436-489 (545)
139 TIGR03286 methan_mark_15 putat 91.8 0.19 4.1E-06 53.5 4.3 48 17-65 354-402 (404)
140 PRK10939 autoinducer-2 (AI-2) 91.3 0.35 7.7E-06 54.8 6.3 58 6-68 400-458 (520)
141 PF07318 DUF1464: Protein of u 91.1 2.4 5.3E-05 44.2 11.5 55 542-597 258-319 (343)
142 PRK10331 L-fuculokinase; Provi 91.1 0.41 8.8E-06 53.5 6.4 50 17-68 389-438 (470)
143 TIGR02627 rhamnulo_kin rhamnul 90.6 0.46 9.9E-06 52.9 6.3 58 5-68 377-435 (454)
144 TIGR01314 gntK_FGGY gluconate 90.6 0.47 1E-05 53.6 6.4 49 17-67 401-449 (505)
145 COG1924 Activator of 2-hydroxy 90.3 0.51 1.1E-05 49.2 5.6 46 21-67 346-391 (396)
146 COG0248 GppA Exopolyphosphatas 89.9 3.3 7.2E-05 46.0 12.0 99 322-426 47-148 (492)
147 PRK10640 rhaB rhamnulokinase; 89.8 0.59 1.3E-05 52.2 6.2 58 5-68 365-423 (471)
148 PRK11031 guanosine pentaphosph 89.7 2.2 4.7E-05 48.0 10.6 120 321-451 49-171 (496)
149 PRK13317 pantothenate kinase; 89.3 0.51 1.1E-05 48.4 4.9 50 16-65 221-273 (277)
150 PRK10854 exopolyphosphatase; P 88.5 1.7 3.6E-05 49.1 8.7 59 362-426 97-156 (513)
151 PF02541 Ppx-GppA: Ppx/GppA ph 88.5 3.3 7.1E-05 42.8 10.3 77 364-451 74-151 (285)
152 COG0554 GlpK Glycerol kinase [ 88.2 1.5 3.2E-05 47.4 7.4 87 509-597 365-453 (499)
153 TIGR00744 ROK_glcA_fam ROK fam 87.5 34 0.00073 35.9 17.5 94 324-424 32-140 (318)
154 PF03702 UPF0075: Uncharacteri 86.4 2.2 4.8E-05 45.4 7.6 74 518-594 261-338 (364)
155 PF11104 PilM_2: Type IV pilus 84.9 0.84 1.8E-05 48.6 3.7 31 12-42 269-299 (340)
156 COG1069 AraB Ribulose kinase [ 83.5 1.9 4.2E-05 47.2 5.6 60 3-67 420-479 (544)
157 PF00022 Actin: Actin; InterP 83.4 0.66 1.4E-05 50.5 2.1 63 4-66 295-367 (393)
158 cd00012 ACTIN Actin; An ubiqui 83.1 0.47 1E-05 51.2 0.8 64 3-66 273-347 (371)
159 TIGR00329 gcp_kae1 metallohydr 82.8 40 0.00087 35.2 15.0 25 544-568 258-282 (305)
160 KOG2517|consensus 82.6 3.1 6.6E-05 46.0 6.7 53 16-70 413-465 (516)
161 PRK14878 UGMP family protein; 82.3 63 0.0014 34.0 16.4 25 544-568 241-265 (323)
162 PTZ00340 O-sialoglycoprotein e 82.1 74 0.0016 33.8 17.3 117 322-450 39-164 (345)
163 TIGR03706 exo_poly_only exopol 81.9 7.5 0.00016 40.5 9.2 77 362-450 86-163 (300)
164 PLN02666 5-oxoprolinase 81.7 18 0.00038 45.3 13.4 77 511-590 454-531 (1275)
165 PLN02920 pantothenate kinase 1 80.4 12 0.00025 40.1 9.8 50 542-591 295-350 (398)
166 COG1070 XylB Sugar (pentulose 80.4 2.6 5.6E-05 47.5 5.5 51 16-68 400-450 (502)
167 TIGR03281 methan_mark_12 putat 78.9 12 0.00026 38.3 8.9 85 510-597 222-315 (326)
168 TIGR01175 pilM type IV pilus a 77.8 2.9 6.3E-05 44.6 4.7 29 14-42 279-307 (348)
169 PRK09585 anmK anhydro-N-acetyl 77.7 9 0.0002 40.8 8.2 67 523-593 268-338 (365)
170 COG2377 Predicted molecular ch 76.6 45 0.00098 35.2 12.6 54 541-594 287-344 (371)
171 PRK03011 butyrate kinase; Prov 76.2 5.6 0.00012 42.5 6.2 46 544-589 295-343 (358)
172 PF06277 EutA: Ethanolamine ut 75.8 14 0.00031 40.3 9.0 113 326-447 58-178 (473)
173 PF02543 CmcH_NodU: Carbamoylt 75.7 1.2E+02 0.0026 32.5 18.6 83 509-596 131-216 (360)
174 PF08735 DUF1786: Putative pyr 74.9 44 0.00096 33.5 11.5 156 245-424 18-184 (254)
175 TIGR03739 PRTRC_D PRTRC system 74.5 5 0.00011 42.3 5.4 48 15-64 271-318 (320)
176 COG0849 ftsA Cell division ATP 73.0 5.8 0.00013 43.1 5.4 66 2-67 305-381 (418)
177 COG1077 MreB Actin-like ATPase 72.8 1.8 3.8E-05 44.5 1.3 64 3-67 266-332 (342)
178 COG0145 HyuA N-methylhydantoin 71.3 5.5 0.00012 46.1 5.0 84 327-425 213-296 (674)
179 TIGR03281 methan_mark_12 putat 69.9 10 0.00022 38.7 5.9 51 17-70 262-315 (326)
180 TIGR00143 hypF [NiFe] hydrogen 69.4 6.4 0.00014 46.1 5.1 49 544-592 658-711 (711)
181 PRK00976 hypothetical protein; 69.3 36 0.00078 35.6 9.9 51 544-597 263-315 (326)
182 PRK07058 acetate kinase; Provi 68.6 13 0.00029 39.8 6.8 44 521-568 299-343 (396)
183 cd06007 R3H_DEXH_helicase R3H 67.5 18 0.00039 27.4 5.4 39 338-378 6-44 (59)
184 PF13941 MutL: MutL protein 65.1 81 0.0017 34.8 12.1 183 363-580 204-424 (457)
185 COG3426 Butyrate kinase [Energ 63.5 15 0.00033 36.9 5.6 67 523-589 274-344 (358)
186 PHA02562 46 endonuclease subun 62.8 62 0.0013 37.0 11.6 12 377-388 497-508 (562)
187 PF02801 Ketoacyl-synt_C: Beta 62.8 5.9 0.00013 34.9 2.5 43 2-44 29-73 (119)
188 COG0533 QRI7 Metal-dependent p 62.2 19 0.00041 37.7 6.3 230 322-587 40-305 (342)
189 TIGR03123 one_C_unchar_1 proba 60.1 6.3 0.00014 41.1 2.4 19 408-426 129-147 (318)
190 PF01869 BcrAD_BadFG: BadF/Bad 58.6 18 0.0004 36.9 5.6 44 21-64 224-271 (271)
191 cd02640 R3H_NRF R3H domain of 56.1 43 0.00094 25.4 5.7 42 337-379 5-46 (60)
192 PF07520 SrfB: Virulence facto 55.3 21 0.00046 42.7 5.8 51 17-67 766-835 (1002)
193 smart00268 ACTIN Actin. ACTIN 54.9 3.9 8.5E-05 44.1 -0.1 62 4-65 276-346 (373)
194 KOG0681|consensus 54.4 1E+02 0.0023 34.2 10.3 116 331-457 95-215 (645)
195 PRK00976 hypothetical protein; 52.0 35 0.00076 35.6 6.2 51 17-70 263-315 (326)
196 cd00327 cond_enzymes Condensin 51.9 42 0.00092 33.6 7.0 61 2-63 13-76 (254)
197 PRK09605 bifunctional UGMP fam 51.4 44 0.00096 38.0 7.7 53 544-596 245-302 (535)
198 KOG2708|consensus 51.2 1.3E+02 0.0028 29.5 9.3 63 522-589 237-300 (336)
199 PTZ00281 actin; Provisional 50.4 3 6.4E-05 45.1 -1.9 48 18-65 295-349 (376)
200 PF06406 StbA: StbA protein; 50.3 17 0.00036 38.3 3.8 45 14-60 269-315 (318)
201 PRK09604 UGMP family protein; 47.5 3.7E+02 0.0079 28.4 23.2 53 544-596 254-311 (332)
202 PF14574 DUF4445: Domain of un 47.3 46 0.00099 36.2 6.5 60 505-565 289-348 (412)
203 PRK12440 acetate kinase; Revie 47.1 2.1E+02 0.0046 30.9 11.3 25 544-568 320-345 (397)
204 COG1521 Pantothenate kinase ty 46.0 83 0.0018 31.7 7.6 44 513-556 181-224 (251)
205 PF03702 UPF0075: Uncharacteri 44.7 42 0.0009 35.9 5.7 51 17-67 284-338 (364)
206 PF08841 DDR: Diol dehydratase 44.0 34 0.00073 34.7 4.4 52 13-64 271-329 (332)
207 PTZ00452 actin; Provisional 43.3 7.3 0.00016 42.1 -0.2 48 18-65 294-348 (375)
208 KOG2196|consensus 43.2 2.3E+02 0.0049 28.1 9.7 38 251-292 214-251 (254)
209 PF03980 Nnf1: Nnf1 ; InterPr 43.2 1.7E+02 0.0036 25.2 8.3 56 277-344 30-85 (109)
210 cd02641 R3H_Smubp-2_like R3H d 43.1 1E+02 0.0022 23.4 6.1 44 335-379 3-46 (60)
211 PLN02377 3-ketoacyl-CoA syntha 43.0 36 0.00079 38.0 5.1 62 2-63 178-242 (502)
212 KOG1385|consensus 42.2 76 0.0017 34.0 6.9 20 406-425 212-231 (453)
213 TIGR00555 panK_eukar pantothen 41.5 32 0.0007 35.2 4.1 48 15-62 228-278 (279)
214 PRK06840 hypothetical protein; 40.8 51 0.0011 34.9 5.8 42 2-43 59-103 (339)
215 PF07318 DUF1464: Protein of u 40.4 51 0.0011 34.7 5.3 55 15-70 258-319 (343)
216 PTZ00466 actin-like protein; P 40.3 8.4 0.00018 41.7 -0.4 48 18-65 299-353 (380)
217 COG0554 GlpK Glycerol kinase [ 40.2 63 0.0014 35.4 6.1 51 17-69 402-452 (499)
218 TIGR03150 fabF beta-ketoacyl-a 40.2 48 0.001 36.1 5.6 41 3-43 280-322 (407)
219 PRK09185 3-oxoacyl-(acyl carri 40.0 35 0.00077 37.0 4.4 42 3-44 265-308 (392)
220 PRK05082 N-acetylmannosamine k 39.8 1.1E+02 0.0024 31.5 8.0 48 544-591 233-286 (291)
221 KOG2707|consensus 39.7 4.9E+02 0.011 27.6 18.3 217 329-568 82-329 (405)
222 TIGR02707 butyr_kinase butyrat 39.3 78 0.0017 33.8 6.7 45 544-588 293-340 (351)
223 PRK07910 3-oxoacyl-(acyl carri 39.2 72 0.0016 35.0 6.7 43 2-44 290-334 (418)
224 COG5026 Hexokinase [Carbohydra 39.1 1.3E+02 0.0027 32.7 8.0 30 405-434 73-103 (466)
225 PTZ00004 actin-2; Provisional 39.1 7.2 0.00016 42.2 -1.1 62 4-65 281-351 (378)
226 PRK14691 3-oxoacyl-(acyl carri 38.8 37 0.0008 36.1 4.2 41 3-43 211-253 (342)
227 PF00814 Peptidase_M22: Glycop 38.8 4.4E+02 0.0095 26.8 13.2 40 524-568 206-245 (268)
228 COG5277 Actin and related prot 38.5 19 0.00041 39.7 2.0 48 18-65 363-417 (444)
229 PRK03011 butyrate kinase; Prov 38.1 36 0.00077 36.4 4.0 47 17-63 295-344 (358)
230 PRK13310 N-acetyl-D-glucosamin 37.8 1.1E+02 0.0023 31.8 7.6 48 544-591 245-300 (303)
231 PLN03170 chalcone synthase; Pr 37.6 52 0.0011 35.9 5.2 42 2-43 112-154 (401)
232 PRK05952 3-oxoacyl-(acyl carri 37.4 37 0.00081 36.7 4.0 42 2-43 258-301 (381)
233 PRK06065 acetyl-CoA acetyltran 37.4 50 0.0011 35.9 5.0 42 2-44 35-80 (392)
234 cd00825 decarbox_cond_enzymes 37.2 79 0.0017 33.1 6.5 65 2-67 17-109 (332)
235 KOG0797|consensus 36.7 14 0.00031 40.2 0.7 52 545-596 527-592 (618)
236 cd02646 R3H_G-patch R3H domain 36.6 88 0.0019 23.5 4.8 42 334-378 2-43 (58)
237 PLN03172 chalcone synthase fam 35.7 46 0.001 36.1 4.5 42 2-43 108-150 (393)
238 PRK07515 3-oxoacyl-(acyl carri 35.5 19 0.00041 38.8 1.4 29 3-31 276-304 (372)
239 PF00871 Acetate_kinase: Aceto 35.5 6.1E+02 0.013 27.5 12.8 45 521-568 300-345 (388)
240 cd02639 R3H_RRM R3H domain of 35.5 96 0.0021 23.6 4.8 31 349-379 16-46 (60)
241 PTZ00280 Actin-related protein 35.2 22 0.00048 38.9 1.9 39 4-42 297-337 (414)
242 PLN02377 3-ketoacyl-CoA syntha 35.1 98 0.0021 34.7 6.9 54 515-568 164-218 (502)
243 COG1548 Predicted transcriptio 35.1 94 0.002 31.1 5.8 73 333-426 76-149 (330)
244 PF02685 Glucokinase: Glucokin 34.8 5.4E+02 0.012 26.9 12.1 127 323-459 36-181 (316)
245 PLN03173 chalcone synthase; Pr 34.4 1.5E+02 0.0033 32.2 8.1 48 521-568 100-148 (391)
246 PF00349 Hexokinase_1: Hexokin 34.4 58 0.0013 31.8 4.4 25 405-429 61-85 (206)
247 TIGR03722 arch_KAE1 universal 34.0 64 0.0014 33.9 5.1 43 544-586 242-289 (322)
248 PRK00180 acetate kinase A/prop 33.9 55 0.0012 35.4 4.6 27 543-569 322-349 (402)
249 PLN03173 chalcone synthase; Pr 33.7 75 0.0016 34.5 5.7 42 2-43 108-150 (391)
250 PLN03170 chalcone synthase; Pr 33.1 1.4E+02 0.003 32.6 7.6 54 516-569 99-153 (401)
251 cd00833 PKS polyketide synthas 32.9 48 0.001 36.2 4.2 41 3-43 284-326 (421)
252 PLN02902 pantothenate kinase 32.9 2.8E+02 0.0061 33.1 10.2 51 542-592 344-400 (876)
253 PLN03172 chalcone synthase fam 32.9 1.5E+02 0.0033 32.2 7.8 54 515-568 94-148 (393)
254 COG4819 EutA Ethanolamine util 32.6 1.3E+02 0.0027 31.4 6.5 73 350-426 89-164 (473)
255 PRK06158 thiolase; Provisional 32.4 85 0.0018 34.0 5.9 40 2-43 34-73 (384)
256 PRK12879 3-oxoacyl-(acyl carri 31.9 82 0.0018 33.0 5.6 43 2-44 59-103 (325)
257 PRK09585 anmK anhydro-N-acetyl 31.6 1.3E+02 0.0029 32.2 6.9 49 18-67 287-339 (365)
258 PRK09557 fructokinase; Reviewe 31.1 91 0.002 32.3 5.7 48 544-591 244-299 (301)
259 PLN03168 chalcone synthase; Pr 31.0 55 0.0012 35.5 4.1 42 2-43 107-149 (389)
260 PF14574 DUF4445: Domain of un 30.9 1.8E+02 0.0039 31.8 7.8 45 516-560 55-99 (412)
261 TIGR03723 bact_gcp putative gl 30.4 6.5E+02 0.014 26.3 20.1 45 544-588 259-308 (314)
262 PRK07204 3-oxoacyl-(acyl carri 30.3 1.1E+02 0.0024 32.2 6.2 43 2-44 58-102 (329)
263 COG0332 FabH 3-oxoacyl-[acyl-c 30.2 91 0.002 32.7 5.3 61 2-65 58-120 (323)
264 PRK12880 3-oxoacyl-(acyl carri 30.1 62 0.0013 34.6 4.3 43 2-44 66-110 (353)
265 TIGR00747 fabH 3-oxoacyl-(acyl 30.0 1.1E+02 0.0023 32.0 6.0 43 2-44 57-101 (318)
266 cd02198 YjgH_like YjgH belongs 29.6 48 0.001 28.6 2.7 43 2-44 40-84 (111)
267 PRK09116 3-oxoacyl-(acyl carri 29.6 67 0.0015 35.1 4.5 42 3-44 280-323 (405)
268 COG4820 EutJ Ethanolamine util 28.9 89 0.0019 30.0 4.4 50 12-62 221-270 (277)
269 cd00827 init_cond_enzymes "ini 28.8 98 0.0021 32.3 5.5 41 2-43 54-97 (324)
270 TIGR01319 glmL_fam conserved h 28.5 33 0.00071 37.6 1.7 43 539-581 384-432 (463)
271 PLN03168 chalcone synthase; Pr 28.4 1.9E+02 0.0042 31.3 7.7 54 515-568 93-147 (389)
272 PRK09258 3-oxoacyl-(acyl carri 28.4 1E+02 0.0022 32.6 5.5 43 2-44 67-111 (338)
273 PLN02192 3-ketoacyl-CoA syntha 28.2 99 0.0021 34.7 5.5 59 3-62 183-245 (511)
274 COG4457 SrfB Uncharacterized p 28.2 97 0.0021 35.2 5.2 53 15-67 776-847 (1014)
275 PRK07515 3-oxoacyl-(acyl carri 28.1 1.1E+02 0.0023 33.0 5.8 43 2-44 101-145 (372)
276 PF11802 CENP-K: Centromere-as 27.8 6.6E+02 0.014 25.5 12.9 24 277-300 157-180 (268)
277 PRK09698 D-allose kinase; Prov 27.7 1.8E+02 0.0039 30.0 7.2 49 544-592 236-295 (302)
278 cd00830 KAS_III Ketoacyl-acyl 27.4 92 0.002 32.5 5.0 42 2-43 56-99 (320)
279 COG4012 Uncharacterized protei 26.8 6.8E+02 0.015 25.4 10.5 86 355-456 186-274 (342)
280 PRK06366 acetyl-CoA acetyltran 26.7 1.4E+02 0.003 32.4 6.3 48 2-51 32-85 (388)
281 PLN02854 3-ketoacyl-CoA syntha 26.6 95 0.002 35.0 5.0 41 3-43 195-236 (521)
282 PLN00415 3-ketoacyl-CoA syntha 26.3 1.1E+02 0.0025 33.7 5.4 61 3-63 141-204 (466)
283 PLN00197 beta-amylase; Provisi 25.9 1.5E+02 0.0032 33.2 6.1 56 321-376 240-320 (573)
284 PF05957 DUF883: Bacterial pro 25.8 3.6E+02 0.0077 22.4 7.3 66 200-271 5-72 (94)
285 PRK07801 acetyl-CoA acetyltran 25.7 1.4E+02 0.003 32.3 6.0 22 2-23 32-53 (382)
286 PF02803 Thiolase_C: Thiolase, 25.5 48 0.001 29.4 2.0 31 3-33 27-57 (123)
287 cd00751 thiolase Thiolase are 25.3 1.4E+02 0.0031 32.2 6.1 41 2-43 28-71 (386)
288 smart00825 PKS_KS Beta-ketoacy 25.1 80 0.0017 34.6 4.2 41 3-43 284-326 (424)
289 PF10458 Val_tRNA-synt_C: Valy 25.0 2.9E+02 0.0064 21.2 6.1 43 224-266 11-53 (66)
290 COG2441 Predicted butyrate kin 24.8 1.9E+02 0.0042 29.3 6.1 55 543-597 272-336 (374)
291 PTZ00050 3-oxoacyl-acyl carrie 24.6 72 0.0016 35.0 3.6 41 3-43 288-331 (421)
292 PLN03169 chalcone synthase fam 24.3 84 0.0018 34.1 4.0 61 1-64 111-174 (391)
293 cd00828 elong_cond_enzymes "el 24.0 79 0.0017 34.4 3.8 41 3-43 279-321 (407)
294 TIGR00016 ackA acetate kinase. 23.6 1.1E+02 0.0023 33.2 4.5 26 544-569 327-353 (404)
295 PRK08170 acetyl-CoA acetyltran 23.5 1.5E+02 0.0032 32.7 5.8 51 2-53 33-88 (426)
296 PRK06816 3-oxoacyl-(acyl carri 23.4 1.6E+02 0.0035 31.7 6.0 41 2-42 69-111 (378)
297 PRK07204 3-oxoacyl-(acyl carri 23.4 59 0.0013 34.2 2.6 37 3-42 235-271 (329)
298 PF08541 ACP_syn_III_C: 3-Oxoa 23.3 1.1E+02 0.0024 25.0 3.7 32 8-42 1-32 (90)
299 PLN02787 3-oxoacyl-[acyl-carri 23.1 87 0.0019 35.6 3.9 41 3-43 410-452 (540)
300 PRK12879 3-oxoacyl-(acyl carri 23.1 89 0.0019 32.7 3.9 37 3-42 230-266 (325)
301 PRK06205 acetyl-CoA acetyltran 22.9 1.5E+02 0.0033 32.2 5.8 40 2-42 32-74 (404)
302 COG2192 Predicted carbamoyl tr 22.2 1.2E+03 0.025 26.5 16.8 83 510-597 255-339 (555)
303 cd00832 CLF Chain-length facto 22.0 1.1E+02 0.0025 33.2 4.5 42 3-44 275-318 (399)
304 PRK06954 acetyl-CoA acetyltran 21.6 1.4E+02 0.0031 32.5 5.1 22 2-23 37-58 (397)
305 PRK06519 3-oxoacyl-(acyl carri 21.5 1.3E+02 0.0028 32.8 4.8 39 3-42 285-325 (398)
306 PRK06445 acetyl-CoA acetyltran 21.5 1.6E+02 0.0036 31.9 5.6 22 2-23 38-59 (394)
307 TIGR00143 hypF [NiFe] hydrogen 21.4 84 0.0018 37.0 3.5 49 17-65 658-711 (711)
308 KOG3133|consensus 21.3 3.6E+02 0.0077 27.2 7.1 85 254-361 162-246 (267)
309 PRK07314 3-oxoacyl-(acyl carri 21.3 1.4E+02 0.003 32.6 5.1 41 3-43 281-323 (411)
310 PRK09352 3-oxoacyl-(acyl carri 21.2 2E+02 0.0044 29.9 6.1 42 2-43 58-101 (319)
311 PRK06501 3-oxoacyl-(acyl carri 21.1 1E+02 0.0022 33.9 4.0 42 2-43 293-336 (425)
312 PLN02836 3-oxoacyl-[acyl-carri 21.1 85 0.0018 34.7 3.3 41 3-43 304-346 (437)
313 cd00825 decarbox_cond_enzymes 21.0 68 0.0015 33.6 2.5 39 3-41 210-250 (332)
314 PRK12391 tryptophan synthase s 20.9 1.5E+02 0.0033 32.6 5.1 63 352-422 356-419 (427)
315 PLN02854 3-ketoacyl-CoA syntha 20.9 2.2E+02 0.0047 32.2 6.4 53 516-568 181-234 (521)
316 PF08392 FAE1_CUT1_RppA: FAE1/ 20.8 1.1E+02 0.0024 31.4 3.8 48 4-51 91-139 (290)
317 KOG2411|consensus 20.4 83 0.0018 34.5 2.8 63 18-87 519-595 (628)
No 1
>KOG0100|consensus
Probab=100.00 E-value=3.7e-77 Score=589.45 Aligned_cols=378 Identities=57% Similarity=0.880 Sum_probs=359.4
Q ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhccc
Q psy5547 317 AGAGPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDK 396 (714)
Q Consensus 317 ~~~~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~ 396 (714)
.+..+.++||+|++|+|.++++.|+.|+|.++.++|+||||||++.||+++++|...|||+++++|+||+|||++|+++.
T Consensus 141 ~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDK 220 (663)
T KOG0100|consen 141 GGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDK 220 (663)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccc
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHH
Q psy5547 397 KVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRR 476 (714)
Q Consensus 397 ~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 476 (714)
.. .++++||||+||||||||++.++++.|+++++.||.++||++||++.++|+.+-++++++.+++.+.+++.+
T Consensus 221 k~------gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~K 294 (663)
T KOG0100|consen 221 KD------GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQK 294 (663)
T ss_pred cC------CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHH
Confidence 63 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 477 LRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 477 l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
|+++||+||+.||++.+..+.++++++|.+|+-++||..|+++..++|...+.+++++|+++++.+.+|+.|+||||++|
T Consensus 295 LrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTr 374 (663)
T KOG0100|consen 295 LRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTR 374 (663)
T ss_pred HHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccc
Q psy5547 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLC 636 (714)
Q Consensus 557 ~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~ 636 (714)
+|.++++|+++|.|++....+||++|||+|||.+|..|+|. ....++++.||+|+++||++.||.|..+|||||.+|.
T Consensus 375 IPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPT 452 (663)
T KOG0100|consen 375 IPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPT 452 (663)
T ss_pred ChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeecceeeccccCCcccCc
Confidence 99999999999999999999999999999999999999998 5568999999999999999999999999999999885
Q ss_pred ---------cccc-ceeeeeeec---------CCCcc-------cCCCCccc-------ccceeeee---------eeEE
Q psy5547 637 ---------LDEV-TASISMLTG---------YPGLC-------LPSGSQLV-------REDKINIT---------KTVI 674 (714)
Q Consensus 637 ---------~d~~-t~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~---------~~~~ 674 (714)
.|++ |++|++|.| .+|.| +|+|+|++ .|++|+++ .+|+
T Consensus 453 kKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kit 532 (663)
T KOG0100|consen 453 KKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKIT 532 (663)
T ss_pred cccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEE
Confidence 3555 489999987 44655 89999999 89999954 4899
Q ss_pred EEeccccccHHHHHHHHHHhhhhhhhhh
Q psy5547 675 FVSCSQRRCIERYVEMIAIAGRCTRHRR 702 (714)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (714)
++|+++||+.|+|+|||.+||+|++++.
T Consensus 533 ItNd~~rLt~EdIerMv~eAekFAeeDk 560 (663)
T KOG0100|consen 533 ITNDKGRLTPEDIERMVNEAEKFAEEDK 560 (663)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhhhhH
Confidence 9999999999999999999999999654
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.2e-61 Score=540.88 Aligned_cols=371 Identities=44% Similarity=0.710 Sum_probs=331.4
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
++.++|++|++++|++|+..++.++|.++.++|||||+||++.||+++++|++.|||+++++++||+|||++|+.+..
T Consensus 132 ~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-- 209 (657)
T PTZ00186 132 GKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-- 209 (657)
T ss_pred CeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
.+.+++|||+||||||+|++++.++.++++++.|+.++||.+||++|++|+.++|..+++.+...+++.+.+|+.
T Consensus 210 -----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~ 284 (657)
T PTZ00186 210 -----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVRE 284 (657)
T ss_pred -----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999998888888788899999999
Q ss_pred HHHHHhHhcCCCCeeEEEEecccCC----ceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFEG----VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 555 (714)
+||++|+.||....+.+.++.+..+ .++.+.|||++|++++.++++++..+++++|+++++...+|+.|+||||+|
T Consensus 285 ~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGss 364 (657)
T PTZ00186 285 AAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364 (657)
T ss_pred HHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcc
Confidence 9999999999998888888765432 357899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcc
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRL 635 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~ 635 (714)
|||.|+++|++.| +..+....||++|||.|||++|+.+++. ++++.+.|++|+||||++.+|.+.++||+||++|
T Consensus 365 riP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP 439 (657)
T PTZ00186 365 RMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIP 439 (657)
T ss_pred cChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccccccceecCCEEEEEEeCCCEee
Confidence 9999999999999 5566788999999999999999999875 5688999999999999999999999999999998
Q ss_pred cc---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eE
Q psy5547 636 CL---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TV 673 (714)
Q Consensus 636 ~~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~ 673 (714)
+. |+++ ..+.++.| +.|.| .|+|.+.+ .||+|+++. .+
T Consensus 440 ~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~ 519 (657)
T PTZ00186 440 TKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNI 519 (657)
T ss_pred EEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEE
Confidence 63 4554 56777765 44544 45565544 788888554 56
Q ss_pred EEEeccccccHHHHHHHHHHhhhhhhhhhh
Q psy5547 674 IFVSCSQRRCIERYVEMIAIAGRCTRHRRM 703 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
++++ ++.+++++|++|+++|++++.+++.
T Consensus 520 ~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~ 548 (657)
T PTZ00186 520 TITA-NGGLSKEQIEQMIRDSEQHAEADRV 548 (657)
T ss_pred Eecc-CccCCHHHHHHHHHHHHhhhhhhHH
Confidence 6654 5579999999999999988874443
No 3
>KOG0101|consensus
Probab=100.00 E-value=3.4e-61 Score=516.58 Aligned_cols=378 Identities=69% Similarity=0.981 Sum_probs=356.3
Q ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhccc
Q psy5547 317 AGAGPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDK 396 (714)
Q Consensus 317 ~~~~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~ 396 (714)
.+....++|+++++++|.+++..++.++|..+.++|+|||+||+..||+++.+|+..||++++++++||+|||++|+++.
T Consensus 112 ~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k 191 (620)
T KOG0101|consen 112 KGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDK 191 (620)
T ss_pred cccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHH
Q psy5547 397 KVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRR 476 (714)
Q Consensus 397 ~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 476 (714)
.. ....+++|+|+||||+|++++.+.++.+.+.++.|+.++||.+||+.+.+|+..+|+.+++.+...+++.+++
T Consensus 192 ~~-----~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~r 266 (620)
T KOG0101|consen 192 KV-----LGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRR 266 (620)
T ss_pred cc-----cceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHH
Confidence 52 2578899999999999999999998988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 477 LRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 477 l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
|+.+||.+|+.||+...+++.++++++|.++...|+|.+|+.++.+++..+.+++..+|+++++++.+|+.|+||||+++
T Consensus 267 LR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstr 346 (620)
T KOG0101|consen 267 LRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTR 346 (620)
T ss_pred HHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccc
Q psy5547 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLC 636 (714)
Q Consensus 557 ~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~ 636 (714)
+|.++..+++.|+++.+..+.||+++||+|||++|+.++|.....+.++++.|+.|+|+||++.+|.|.++|+++|.+|+
T Consensus 347 iPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~ 426 (620)
T KOG0101|consen 347 IPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPT 426 (620)
T ss_pred chHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccce
Confidence 99999999999988899999999999999999999999999888889999999999999999999999999999999987
Q ss_pred c---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceee---------eeeeEE
Q psy5547 637 L---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKIN---------ITKTVI 674 (714)
Q Consensus 637 ~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~---------~~~~~~ 674 (714)
. |+++ +.|++|+| +.|.| .|+|+|.+ .+++|+ .++.++
T Consensus 427 ~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~ 506 (620)
T KOG0101|consen 427 KKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKIT 506 (620)
T ss_pred eeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEE
Confidence 3 4444 88999876 44555 88899988 788988 455899
Q ss_pred EEeccccccHHHHHHHHHHhhhhhh
Q psy5547 675 FVSCSQRRCIERYVEMIAIAGRCTR 699 (714)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (714)
|+|+++|+|+++|++|+.+|++|+.
T Consensus 507 i~n~~grls~~~Ierm~~ea~~~~~ 531 (620)
T KOG0101|consen 507 ITNDKGRLSKEEIERMVQEAEKYKA 531 (620)
T ss_pred Eecccceeehhhhhhhhhhhhhccc
Confidence 9999999999999999999999998
No 4
>KOG0102|consensus
Probab=100.00 E-value=1.9e-61 Score=496.05 Aligned_cols=374 Identities=51% Similarity=0.762 Sum_probs=346.6
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|.++.+++|.+++++++++++.++.++|+||||||++.||+++++|.+.||++++++++||+|||++|+++..
T Consensus 132 G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k-- 209 (640)
T KOG0102|consen 132 GKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK-- 209 (640)
T ss_pred CeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
.+..++|+|+||||||++++.+.++.|++.++.||.++||++||..+.+++...|....+.+...+..+++|++.
T Consensus 210 -----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~e 284 (640)
T KOG0102|consen 210 -----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLRE 284 (640)
T ss_pred -----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHhHhcCCCCeeEEEEecccCC----ceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFEG----VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 555 (714)
++|++|+.||+.....+.+++...+ ..+++++||.+|++++.+++++.+++++++|+++++..+||+.|+||||++
T Consensus 285 aaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmt 364 (640)
T KOG0102|consen 285 AAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMT 364 (640)
T ss_pred HHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchh
Confidence 9999999999999999998877655 468899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcc
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRL 635 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~ 635 (714)
|+|.+++.+++.| +.......||+++||.|||++++.++|. ++++.+.||+|+|+||++.+|.|..+||+||++|
T Consensus 365 rmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtpLsLgietlggvft~Li~rnttIp 439 (640)
T KOG0102|consen 365 RMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIP 439 (640)
T ss_pred hcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecchHHHHHHhhhhhheecccCCcccC
Confidence 9999999999999 7777888899999999999999999987 8999999999999999999999999999999998
Q ss_pred cc---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeee---------eeE
Q psy5547 636 CL---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINIT---------KTV 673 (714)
Q Consensus 636 ~~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~---------~~~ 673 (714)
.. |.++ +.|.++.| +.|+| +|+|+|++ .||+++++ .++
T Consensus 440 tkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi 519 (640)
T KOG0102|consen 440 TKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSI 519 (640)
T ss_pred chhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccce
Confidence 63 5666 67777655 44555 89999998 88888844 366
Q ss_pred EEEeccccccHHHHHHHHHHhhhhhhhhhhhhh
Q psy5547 674 IFVSCSQRRCIERYVEMIAIAGRCTRHRRMRYQ 706 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
++-...+ |++++|++||++|||+..+++++-+
T Consensus 520 ~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~ 551 (640)
T KOG0102|consen 520 TIASSGG-LSKDEIELMVGEAERLASTDKEKRE 551 (640)
T ss_pred EEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6666666 9999999999999999998888766
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.3e-58 Score=522.74 Aligned_cols=372 Identities=45% Similarity=0.702 Sum_probs=330.2
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|++|++++|++|++.++.++|.++.++|||||++|++.||+++++||+.|||+++++++||+|||++|+.+..
T Consensus 107 ~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-- 184 (668)
T PRK13410 107 EREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS-- 184 (668)
T ss_pred CeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
.+.++||||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.++|..+++.+...+++.+.+|+.
T Consensus 185 -----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~ 259 (668)
T PRK13410 185 -----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTE 259 (668)
T ss_pred -----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999998888888788889999999
Q ss_pred HHHHHhHhcCCCCeeEEEEecccCC----ceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFEG----VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 555 (714)
+||++|+.||......+.++.+..+ .++...|||++|++++.++++++..+|+++|+++++.+.+|+.|+||||+|
T Consensus 260 ~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGss 339 (668)
T PRK13410 260 AAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGST 339 (668)
T ss_pred HHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcc
Confidence 9999999999998888888876543 367889999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcc
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRL 635 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~ 635 (714)
|+|+|++.|++.| +..+....||++|||+|||++|+.+++. ++++.+.|++|++||+++.+|.+.++||+||++|
T Consensus 340 RiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP 414 (668)
T PRK13410 340 RMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIP 414 (668)
T ss_pred ccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeeccccccceecCCeeEEEEeCCCccc
Confidence 9999999999999 5677888999999999999999999874 6788999999999999999999999999999998
Q ss_pred cc---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eE
Q psy5547 636 CL---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TV 673 (714)
Q Consensus 636 ~~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~ 673 (714)
+. |+++ ..+.++.| +.|.| .|+|.+.+ .||+|+++. .+
T Consensus 415 ~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~ 494 (668)
T PRK13410 415 VRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSV 494 (668)
T ss_pred ccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeee
Confidence 64 3333 45666654 23443 34555544 788888654 34
Q ss_pred EEEeccccccHHHHHHHHHHhhhhhhhhhhh
Q psy5547 674 IFVSCSQRRCIERYVEMIAIAGRCTRHRRMR 704 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
++. ...++++++|++|++++++++.++|.+
T Consensus 495 ~i~-~~~~ls~~ei~~~~~~~~~~~~~d~~~ 524 (668)
T PRK13410 495 TIQ-GASTLSEQEVNRMIQEAEAKADEDRRR 524 (668)
T ss_pred eec-ccccCCHHHHHHHHHHHHHHhhhhHHH
Confidence 443 357799999999999999998866554
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.5e-58 Score=520.88 Aligned_cols=375 Identities=50% Similarity=0.746 Sum_probs=330.3
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCC
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 400 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~ 400 (714)
..++|++|++++|++|++.++.++|.++.++|||||++|++.||+++++||+.|||+++++++||+|||++|+.....
T Consensus 106 ~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~~-- 183 (653)
T PRK13411 106 RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQD-- 183 (653)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhcccccC--
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999875431
Q ss_pred CCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHH
Q psy5547 401 AAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 480 (714)
Q Consensus 401 ~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (714)
.+.+++|||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.++|..+++.+...+++.+.+|+.+
T Consensus 184 ----~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~ 259 (653)
T PRK13411 184 ----QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREA 259 (653)
T ss_pred ----CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999988887888888899999999
Q ss_pred HHHHhHhcCCCCeeEEEEecccC----CceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 481 CERAKRTLSSSTQASIEIDSLFE----GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 481 ~e~~K~~ls~~~~~~i~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
||++|+.||....+.+.++.+.. +.++.+.|||++|++++.++++++..+|+++|+++++...+|+.|+||||+||
T Consensus 260 aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssr 339 (653)
T PRK13411 260 AEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTR 339 (653)
T ss_pred HHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCC
Confidence 99999999999888888876543 24688999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccc
Q psy5547 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLC 636 (714)
Q Consensus 557 ~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~ 636 (714)
+|+|++.|++.|++..+..+.||++|||+|||++|+.+++. ++++.+.|++|++||+++.+|.|.++||+|+.+|+
T Consensus 340 iP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~ 415 (653)
T PRK13411 340 IPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPT 415 (653)
T ss_pred cchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEecCCceEEEEECCCcccc
Confidence 99999999999977788889999999999999999999875 67889999999999999999999999999999987
Q ss_pred c---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eEE
Q psy5547 637 L---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TVI 674 (714)
Q Consensus 637 ~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~~ 674 (714)
. |+++ ..+.++.| +.|.| .|+|.+.+ .|+.|+++. .++
T Consensus 416 ~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~ 495 (653)
T PRK13411 416 SKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIR 495 (653)
T ss_pred eeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeE
Confidence 4 3333 45666654 23443 34454433 677777543 344
Q ss_pred EEeccccccHHHHHHHHHHhhhhhhhhhhhhh
Q psy5547 675 FVSCSQRRCIERYVEMIAIAGRCTRHRRMRYQ 706 (714)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
+++ ...+|.++|++|++++++++.+++.+-+
T Consensus 496 i~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~ 526 (653)
T PRK13411 496 ITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQ 526 (653)
T ss_pred Eec-cccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 443 5679999999999999999886665433
No 7
>KOG0100|consensus
Probab=100.00 E-value=2.1e-58 Score=456.41 Aligned_cols=298 Identities=65% Similarity=1.016 Sum_probs=290.4
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceee
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 80 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~ 80 (714)
++|++++|++++|.++|||.++|||||||||.||++|+++|+++++++.+|||||||+|||.+|..|++. ....++++
T Consensus 346 lkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divL 423 (663)
T KOG0100|consen 346 LKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVL 423 (663)
T ss_pred hHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999999999765 46789999
Q ss_pred eeeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcce
Q psy5547 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 160 (714)
Q Consensus 81 ~dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~ 160 (714)
.|++|.++|+++.+|.|+.|||+|+.+|++++..|++..|+|+.+.|++|+|++....+|..+|.|.+.++||+|.|.+.
T Consensus 424 LDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpq 503 (663)
T KOG0100|consen 424 LDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQ 503 (663)
T ss_pred EeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccc
Q psy5547 161 IEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240 (714)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L 240 (714)
|+|+|.+|.||+|+|++.++.+|+...++++++.++|++|+++++....++|...|+..+++.++||+||+|.|.+++.+
T Consensus 504 IEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi 583 (663)
T KOG0100|consen 504 IEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQI 583 (663)
T ss_pred EEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-hhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhc
Q psy5547 241 ED-EKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300 (714)
Q Consensus 241 ~~-~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~ 300 (714)
.+ +.+...+++++++.+..++++..+||+++.++++++|++++++|...+.||..++++.
T Consensus 584 ~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 584 GDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred CchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 86 6688999999999999999999999999999999999999999999999999999884
No 8
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.6e-57 Score=513.94 Aligned_cols=380 Identities=65% Similarity=0.936 Sum_probs=334.5
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
...++|++|++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+......
T Consensus 112 ~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~ 191 (653)
T PTZ00009 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGD 191 (653)
T ss_pred eEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhc-cCccccHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK-KDLTTNKRALRRLR 478 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~-~~~~~~~~~~~~l~ 478 (714)
.+.+++|||+||||||+|++++.++.++++++.|+..+||.+||++|++|+.++|..++. .+...+++.+.+|+
T Consensus 192 -----~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 266 (653)
T PTZ00009 192 -----GEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLR 266 (653)
T ss_pred -----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999987763 56677888999999
Q ss_pred HHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcH
Q psy5547 479 TACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 558 (714)
Q Consensus 479 ~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p 558 (714)
.+||++|+.||.+..+.+.++.++++.++.+.|||++|++++.++++++...|+++|++++++..+|+.|+||||+||+|
T Consensus 267 ~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP 346 (653)
T PTZ00009 267 TQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIP 346 (653)
T ss_pred HHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCCh
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcccc-
Q psy5547 559 KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLCL- 637 (714)
Q Consensus 559 ~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~~- 637 (714)
+|+++|++.|++..+....||+++||.|||++|+.+++...++++++.+.|++|++||++..+|.+.++||+|+.+|+.
T Consensus 347 ~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~ 426 (653)
T PTZ00009 347 KVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKK 426 (653)
T ss_pred hHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccc
Confidence 9999999999777788899999999999999999999865667888999999999999999999999999999999864
Q ss_pred --------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeee---------eeEEEE
Q psy5547 638 --------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINIT---------KTVIFV 676 (714)
Q Consensus 638 --------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~---------~~~~~~ 676 (714)
|+++ ..+.++.| +.|.| .|+|.+.+ .++.|+++ ..+.+.
T Consensus 427 ~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~ 506 (653)
T PTZ00009 427 SQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITIT 506 (653)
T ss_pred eeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEe
Confidence 3333 34555544 22333 23333322 56666643 356666
Q ss_pred eccccccHHHHHHHHHHhhhhhhhhhhh
Q psy5547 677 SCSQRRCIERYVEMIAIAGRCTRHRRMR 704 (714)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
+...++++++|++|+++.++++.+++.+
T Consensus 507 ~~~~~ls~~~i~~~~~~~~~~~~~d~~~ 534 (653)
T PTZ00009 507 NDKGRLSKADIDRMVNEAEKYKAEDEAN 534 (653)
T ss_pred eccccccHHHHHHHHHHHHHHHHHhHHH
Confidence 6778999999999999999887755433
No 9
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=5.9e-57 Score=513.10 Aligned_cols=374 Identities=49% Similarity=0.749 Sum_probs=327.6
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|++|++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+....
T Consensus 146 ~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-- 223 (663)
T PTZ00400 146 GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-- 223 (663)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC--
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
.+.+++|||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.++|..+++.+...+++.+.+|+.
T Consensus 224 -----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~ 298 (663)
T PTZ00400 224 -----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLRE 298 (663)
T ss_pred -----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999998888788888899999999
Q ss_pred HHHHHhHhcCCCCeeEEEEecccCC----ceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFEG----VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 555 (714)
+||++|+.||.+....+.++.+..+ .++.+.|||++|+++++++++++.++|.++|+++++.+.+|+.|+||||+|
T Consensus 299 ~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGss 378 (663)
T PTZ00400 299 AAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMT 378 (663)
T ss_pred HHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCcc
Confidence 9999999999998888888765433 478899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcc
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRL 635 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~ 635 (714)
|+|+|+++|++.| +..+....||+++||+|||++|+.+++. ++++.+.|++|++||+++.+|.+.++||+||.+|
T Consensus 379 riP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP 453 (663)
T PTZ00400 379 RMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIP 453 (663)
T ss_pred CChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccccceEEEecCCeeEEEEecCccCC
Confidence 9999999999999 5677888999999999999999999874 5788999999999999999999999999999998
Q ss_pred cc---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eE
Q psy5547 636 CL---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TV 673 (714)
Q Consensus 636 ~~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~ 673 (714)
+. |+++ ..+.++.| +.|.| .|+|.+.+ .+++|+++. .+
T Consensus 454 ~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~ 533 (663)
T PTZ00400 454 TKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEI 533 (663)
T ss_pred ccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEE
Confidence 64 3333 35555654 22333 23444433 667776543 34
Q ss_pred EEEeccccccHHHHHHHHHHhhhhhhhhhhhhh
Q psy5547 674 IFVSCSQRRCIERYVEMIAIAGRCTRHRRMRYQ 706 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (714)
++++ ..++++++|++|++++++++++++.+.+
T Consensus 534 ~i~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~ 565 (663)
T PTZ00400 534 TIQS-SGGLSDEEIEKMVKEAEEYKEQDEKKKE 565 (663)
T ss_pred Eeec-cccccHHHHHHHHHHHHhhhhhhhHHHH
Confidence 4443 4679999999999999999886665543
No 10
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2e-56 Score=508.92 Aligned_cols=371 Identities=48% Similarity=0.734 Sum_probs=325.9
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+..
T Consensus 144 ~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-- 221 (673)
T PLN03184 144 GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK-- 221 (673)
T ss_pred CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
.+.++||||+||||||+|++++.++.++++++.|+.++||.+||+.|++|+.++|..+++.+...+++.+.+|+.
T Consensus 222 -----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~ 296 (673)
T PLN03184 222 -----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTE 296 (673)
T ss_pred -----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999998888788888899999999
Q ss_pred HHHHHhHhcCCCCeeEEEEecccC----CceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFE----GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 555 (714)
+||++|+.||....+.+.++.+.. +.++...|||++|++++.++++++..+|+++|+++++...+|+.|+||||+|
T Consensus 297 ~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGss 376 (673)
T PLN03184 297 AAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGST 376 (673)
T ss_pred HHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCcc
Confidence 999999999999888888875532 2578899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcc
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRL 635 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~ 635 (714)
|+|+|+++|++.| +..+....||+++||.|||++|+.+++. ++++.+.|++|++||+++.+|.+.++||+|+.+|
T Consensus 377 riP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP 451 (673)
T PLN03184 377 RIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLP 451 (673)
T ss_pred ccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecccccceEEecCCeeEEEEeCCCccc
Confidence 9999999999999 6677788999999999999999999874 5678999999999999999999999999999988
Q ss_pred cc---------cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eE
Q psy5547 636 CL---------DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TV 673 (714)
Q Consensus 636 ~~---------d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~ 673 (714)
+. |+++ ..+.++.| +.|.| .|+|.+.+ .++.|+++. .+
T Consensus 452 ~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~ 531 (673)
T PLN03184 452 TSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDI 531 (673)
T ss_pred eecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEE
Confidence 64 3343 45666654 22333 34444433 667777543 34
Q ss_pred EEEeccccccHHHHHHHHHHhhhhhhhhhh
Q psy5547 674 IFVSCSQRRCIERYVEMIAIAGRCTRHRRM 703 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
+++ ....+|+++|++|++++++++.+++.
T Consensus 532 ~i~-~~~~ls~eei~~~~~~~~~~~~~D~~ 560 (673)
T PLN03184 532 TIT-GASTLPKDEVERMVQEAEKFAKEDKE 560 (673)
T ss_pred Eec-ccccccHHHHHHHHHHHHHhhhhhHH
Confidence 444 35679999999999999988875543
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3e-56 Score=503.16 Aligned_cols=361 Identities=42% Similarity=0.629 Sum_probs=316.6
Q ss_pred CCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCC
Q psy5547 322 GPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSA 401 (714)
Q Consensus 322 ~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~ 401 (714)
.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+..
T Consensus 103 ~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~---- 178 (599)
T TIGR01991 103 TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA---- 178 (599)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC----
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHH
Q psy5547 402 AGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 481 (714)
Q Consensus 402 ~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (714)
.+.+++|||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.+++ +.+...++..+.+|+.+|
T Consensus 179 ---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~a 251 (599)
T TIGR01991 179 ---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAA 251 (599)
T ss_pred ---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998764 334345778889999999
Q ss_pred HHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHH
Q psy5547 482 ERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561 (714)
Q Consensus 482 e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~ 561 (714)
|++|+.||....+.+.++. +|.++.++|||++|+++++++++++.++|.++|+++++.+.+|+.|+||||+||+|+|+
T Consensus 252 e~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~ 329 (599)
T TIGR01991 252 RAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329 (599)
T ss_pred HHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHH
Confidence 9999999999888888864 67889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcccc----
Q psy5547 562 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLCL---- 637 (714)
Q Consensus 562 ~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~~---- 637 (714)
++|++.| +..+..+.||++|||.|||++|+.+++. ....++.+.|++|+|||+++.+|.+.++||+||.+|+.
T Consensus 330 ~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~ 406 (599)
T TIGR01991 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQE 406 (599)
T ss_pred HHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEE
Confidence 9999999 5566778999999999999999999876 34467899999999999999999999999999999864
Q ss_pred -----cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eEEEEecc
Q psy5547 638 -----DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TVIFVSCS 679 (714)
Q Consensus 638 -----d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~~~~~~~ 679 (714)
|+++ ..+.++.| +.|.| .|.|.+.+ .|+.|+++. .+.+.+ .
T Consensus 407 ~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~-~ 485 (599)
T TIGR01991 407 FTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKP-S 485 (599)
T ss_pred EEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEeccc-c
Confidence 4444 45666655 23433 34444433 778887543 445544 4
Q ss_pred ccccHHHHHHHHHHhhhhhh
Q psy5547 680 QRRCIERYVEMIAIAGRCTR 699 (714)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~ 699 (714)
..+++++|++|++++++++.
T Consensus 486 ~~l~~~~i~~~~~~~~~~~~ 505 (599)
T TIGR01991 486 YGLSDEEIERMLKDSFKHAE 505 (599)
T ss_pred cCCCHHHHHHHHHHHHhhhh
Confidence 45999999999999997754
No 12
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-55 Score=503.92 Aligned_cols=370 Identities=50% Similarity=0.774 Sum_probs=325.3
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCC
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 400 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~ 400 (714)
..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+....
T Consensus 106 ~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--- 182 (627)
T PRK00290 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--- 182 (627)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC---
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHH
Q psy5547 401 AAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 480 (714)
Q Consensus 401 ~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (714)
.+.++||||+||||||+|++++.++.++++++.|+..+||.+||++|++|+.++|..+++.+...+++.+.+|+.+
T Consensus 183 ----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ 258 (627)
T PRK00290 183 ----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEA 258 (627)
T ss_pred ----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999988888888888999999999
Q ss_pred HHHHhHhcCCCCeeEEEEecccCC----ceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 481 CERAKRTLSSSTQASIEIDSLFEG----VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 481 ~e~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
||++|+.||....+.+.++.+..+ .++.+.|||++|++++.++++++...|+++|+++++...+|+.|+||||+||
T Consensus 259 ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssr 338 (627)
T PRK00290 259 AEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTR 338 (627)
T ss_pred HHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCC
Confidence 999999999999888888776532 5788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccc
Q psy5547 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLC 636 (714)
Q Consensus 557 ~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~ 636 (714)
+|+|++.|++.| +..+..+.||++|||.|||++|+.+++. ++++.+.|++|++||+++.+|.+.++||+|+.+|+
T Consensus 339 iP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~ 413 (627)
T PRK00290 339 MPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPT 413 (627)
T ss_pred ChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccceEEEEEecCCeEEEEecCCCcCCc
Confidence 999999999999 6778889999999999999999999874 67889999999999999999999999999999986
Q ss_pred cc---------ccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eEE
Q psy5547 637 LD---------EVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TVI 674 (714)
Q Consensus 637 ~d---------~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~~ 674 (714)
.. +++ ..+.++.| +.|.| .|+|.+.+ .|+.|+++. .++
T Consensus 414 ~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~ 493 (627)
T PRK00290 414 KKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSIT 493 (627)
T ss_pred cceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEE
Confidence 43 332 35555554 22332 23343323 667777543 344
Q ss_pred EEeccccccHHHHHHHHHHhhhhhhhhhh
Q psy5547 675 FVSCSQRRCIERYVEMIAIAGRCTRHRRM 703 (714)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
++ ...++|.++|++|+++++++..+++.
T Consensus 494 i~-~~~~ls~e~i~~~~~~~~~~~~~d~~ 521 (627)
T PRK00290 494 IT-ASSGLSDEEIERMVKDAEANAEEDKK 521 (627)
T ss_pred ec-cccccCHHHHHHHHHHHHHhhhcchh
Confidence 43 34679999999999999988774443
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.6e-55 Score=498.05 Aligned_cols=357 Identities=39% Similarity=0.615 Sum_probs=309.7
Q ss_pred CCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCC
Q psy5547 322 GPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSA 401 (714)
Q Consensus 322 ~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~ 401 (714)
.++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+..
T Consensus 123 ~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~---- 198 (616)
T PRK05183 123 LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG---- 198 (616)
T ss_pred eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC----
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHH
Q psy5547 402 AGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 481 (714)
Q Consensus 402 ~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (714)
.+.+++|||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.++++ .+...++..+.+|+.+|
T Consensus 199 ---~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~a 271 (616)
T PRK05183 199 ---QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAA 271 (616)
T ss_pred ---CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998764 33335678889999999
Q ss_pred HHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHH
Q psy5547 482 ERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561 (714)
Q Consensus 482 e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~ 561 (714)
|++|+.||....+.+.+..+ ...|||++|++++.++++++..+++++|+++++...+|+.|+||||+||+|+|+
T Consensus 272 e~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~ 345 (616)
T PRK05183 272 RAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVR 345 (616)
T ss_pred HHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHH
Confidence 99999999998888877532 224999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcccc----
Q psy5547 562 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLCL---- 637 (714)
Q Consensus 562 ~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~~---- 637 (714)
+.|+++| +..+....||+++||+|||++|+.+++. ....++.+.|++|+|||+++.+|.+.++||+||.+|+.
T Consensus 346 ~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~ 422 (616)
T PRK05183 346 EAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQE 422 (616)
T ss_pred HHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEE
Confidence 9999999 5556678999999999999999999876 33567899999999999999999999999999999874
Q ss_pred -----cccc-eeeeeeec---------CCCcc-------cCCCCccc-------ccceeeeee---------eEEEEecc
Q psy5547 638 -----DEVT-ASISMLTG---------YPGLC-------LPSGSQLV-------REDKINITK---------TVIFVSCS 679 (714)
Q Consensus 638 -----d~~t-~~i~~~~~---------y~g~~-------~p~g~~~~-------~~~~l~~~~---------~~~~~~~~ 679 (714)
|+++ ..+.++.| +.|.| .|.|.+.+ .|+.|+++. ++++.+.
T Consensus 423 ~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~- 501 (616)
T PRK05183 423 FTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS- 501 (616)
T ss_pred EEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-
Confidence 3343 45666655 22333 33444333 777777543 4455444
Q ss_pred ccccHHHHHHHHHHhhhhhh
Q psy5547 680 QRRCIERYVEMIAIAGRCTR 699 (714)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~ 699 (714)
..+++++|++|++++++++.
T Consensus 502 ~~ls~~~i~~~~~~~~~~~~ 521 (616)
T PRK05183 502 YGLTDDEIARMLKDSMSHAE 521 (616)
T ss_pred ccCCHHHHHHHHHHHHhhhh
Confidence 45999999999999998765
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.6e-55 Score=493.31 Aligned_cols=345 Identities=34% Similarity=0.487 Sum_probs=296.5
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+.+..
T Consensus 113 ~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-- 190 (595)
T PRK01433 113 NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-- 190 (595)
T ss_pred CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC--
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
....+||||+||||||+|++++.++.++++++.|+..+||.+||.+|++|+.+++.. .... +.+.
T Consensus 191 -----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~------~~~~----~~~~ 255 (595)
T PRK01433 191 -----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDL------PNSI----DTLQ 255 (595)
T ss_pred -----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCC------CCCH----HHHH
Confidence 356899999999999999999999999999999999999999999999999987631 1121 2233
Q ss_pred HHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHH
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 559 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~ 559 (714)
.||++|+.||....... ..++|||++|+++++++++++..+++++|++++ ..+|+.|+||||+||+|+
T Consensus 256 ~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~ 323 (595)
T PRK01433 256 LAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPL 323 (595)
T ss_pred HHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChh
Confidence 59999999998764321 168899999999999999999999999999998 578999999999999999
Q ss_pred HHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcccc--
Q psy5547 560 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLCL-- 637 (714)
Q Consensus 560 l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~~-- 637 (714)
|++.|++.| +.++..+.||+++||+|||++|+.+++. ..++.+.|++|+||||++.+|.+.++||+||.+|+.
T Consensus 324 v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~ 398 (595)
T PRK01433 324 IKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398 (595)
T ss_pred HHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceee
Confidence 999999999 5677788999999999999999999875 357889999999999999999999999999999973
Q ss_pred -------cccc-eeeeeeec---------CCCcc----c---CCCCccc-------ccceeeee---------eeEEEEe
Q psy5547 638 -------DEVT-ASISMLTG---------YPGLC----L---PSGSQLV-------REDKINIT---------KTVIFVS 677 (714)
Q Consensus 638 -------d~~t-~~i~~~~~---------y~g~~----~---p~g~~~~-------~~~~l~~~---------~~~~~~~ 677 (714)
|+++ ..+.++.| +.|.| + |+|.+.+ .||.|+++ +.+++++
T Consensus 399 ~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~ 478 (595)
T PRK01433 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKP 478 (595)
T ss_pred EEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecC
Confidence 5554 56777765 23443 3 3444433 77888754 3556654
Q ss_pred ccccccHHHHHHHHHHhhhhhh
Q psy5547 678 CSQRRCIERYVEMIAIAGRCTR 699 (714)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~ 699 (714)
+ ..+++++|++|+++|++++.
T Consensus 479 ~-~~ls~~ei~~~~~~~~~~~~ 499 (595)
T PRK01433 479 N-HGIDKTEIDIMLENAYKNAK 499 (595)
T ss_pred C-CCCCHHHHHHHHHHHHhhhh
Confidence 4 45999999999999997765
No 15
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-56 Score=493.19 Aligned_cols=368 Identities=54% Similarity=0.784 Sum_probs=337.8
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCC
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 400 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~ 400 (714)
+.++|+++++++|.+|+++++.++|..+..+|||||+||++.||+++++|++.||++++++++||+|||++|+.+..
T Consensus 93 ~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--- 169 (579)
T COG0443 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--- 169 (579)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC---
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHH
Q psy5547 401 AAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 480 (714)
Q Consensus 401 ~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (714)
.+.+++|||+||||||+|++++.++.++++++.|+..+||++||.+|..|+..+|..+++.+...++..+++|+.+
T Consensus 170 ----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ 245 (579)
T COG0443 170 ----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREA 245 (579)
T ss_pred ----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHH
Q psy5547 481 CERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 560 (714)
Q Consensus 481 ~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l 560 (714)
||++|+.||...+..+.+++...+.++..+|+|++|++++.+++.++...+..++.+++++..+|+.|+||||++|||.|
T Consensus 246 ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V 325 (579)
T COG0443 246 AEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAV 325 (579)
T ss_pred HHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHH
Confidence 99999999999999999987777777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccccc--
Q psy5547 561 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLCLD-- 638 (714)
Q Consensus 561 ~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~~d-- 638 (714)
++.+++.|+ ..+...+||++++|.|||++|+.+++.. .++.+.|++|+|+|++..++.+..+|++|+++|..+
T Consensus 326 ~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~----~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~ 400 (579)
T COG0443 326 QELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV----PDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQ 400 (579)
T ss_pred HHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc----cCceEEeeeeeccccccCcchhhhHHhcCCCCCcccce
Confidence 999999994 8888999999999999999999999872 388999999999999999999999999999988643
Q ss_pred -------ccc-eeeeeeecC---------CCcc-------cCCCCccc-------ccceeeee---------eeEEEEec
Q psy5547 639 -------EVT-ASISMLTGY---------PGLC-------LPSGSQLV-------REDKINIT---------KTVIFVSC 678 (714)
Q Consensus 639 -------~~t-~~i~~~~~y---------~g~~-------~p~g~~~~-------~~~~l~~~---------~~~~~~~~ 678 (714)
+++ ..+.++.|. .|.| .|+|.|.+ +++.++++ ..+++...
T Consensus 401 ~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~ 480 (579)
T COG0443 401 EFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKAS 480 (579)
T ss_pred EEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecC
Confidence 333 345555442 2333 77788866 77777754 47888888
Q ss_pred cccccHHHHHHHHHHhhhhhhhh
Q psy5547 679 SQRRCIERYVEMIAIAGRCTRHR 701 (714)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~ 701 (714)
.+ +++++|++|+++|+.+++++
T Consensus 481 ~~-ls~~~i~~~~~~a~~~~~~d 502 (579)
T COG0443 481 SG-LSDEEIERMVEDAEANAALD 502 (579)
T ss_pred CC-CCHHHHHHHHHHHHHHHhhH
Confidence 88 99999999999999999977
No 16
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=4.9e-55 Score=497.12 Aligned_cols=373 Identities=51% Similarity=0.788 Sum_probs=325.3
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+....
T Consensus 102 ~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-- 179 (595)
T TIGR02350 102 GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-- 179 (595)
T ss_pred CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc--
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
..+.+++|||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.++|..+++.+...+++.+.+|+.
T Consensus 180 ----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 255 (595)
T TIGR02350 180 ----KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKE 255 (595)
T ss_pred ----CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHH
Confidence 1468899999999999999999999999999999999999999999999999999998888888888889999999
Q ss_pred HHHHHhHhcCCCCeeEEEEecccC----CceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC
Q psy5547 480 ACERAKRTLSSSTQASIEIDSLFE----GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555 (714)
Q Consensus 480 ~~e~~K~~ls~~~~~~i~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 555 (714)
+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++++++++..+++++|+++++.+.+|+.|+||||+|
T Consensus 256 ~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGss 335 (595)
T TIGR02350 256 AAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGST 335 (595)
T ss_pred HHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcc
Confidence 999999999999888888876543 2568899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCcc
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRL 635 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~ 635 (714)
|+|+|++.|++.| +..+....||++|||.|||++|+.+++. ++++.+.|++|++||+++.+|.+.++||+|+.+|
T Consensus 336 riP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP 410 (595)
T TIGR02350 336 RIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 410 (595)
T ss_pred cChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccceeEEEecCCceEEEEeCCCcCC
Confidence 9999999999999 4678889999999999999999999875 6788999999999999999999999999999998
Q ss_pred cc---------cccc-eeeeeeec---------CCCcc----c---CCCCccc-------ccceeeeee---------eE
Q psy5547 636 CL---------DEVT-ASISMLTG---------YPGLC----L---PSGSQLV-------REDKINITK---------TV 673 (714)
Q Consensus 636 ~~---------d~~t-~~i~~~~~---------y~g~~----~---p~g~~~~-------~~~~l~~~~---------~~ 673 (714)
+. |+++ ..+.++.| +.|.+ + |+|.+.+ .++.|+++. .+
T Consensus 411 ~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~ 490 (595)
T TIGR02350 411 TKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSI 490 (595)
T ss_pred ccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEE
Confidence 74 3333 35556544 22322 2 3343323 677777553 34
Q ss_pred EEEeccccccHHHHHHHHHHhhhhhhhhhhh
Q psy5547 674 IFVSCSQRRCIERYVEMIAIAGRCTRHRRMR 704 (714)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (714)
++++ ..++|.+++++|+++++++..+++.+
T Consensus 491 ~i~~-~~~ls~~~~~~~~~~~~~~~~~D~~~ 520 (595)
T TIGR02350 491 TITA-SSGLSEEEIERMVKEAEANAEEDKKR 520 (595)
T ss_pred Eecc-ccccCHHHHHHHHHHHHHhhhcchhH
Confidence 4443 46799999999999998877654443
No 17
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=9.6e-55 Score=494.20 Aligned_cols=370 Identities=50% Similarity=0.768 Sum_probs=323.9
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCC
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGS 400 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~ 400 (714)
..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||++++++++||+|||++|+.+..
T Consensus 108 ~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--- 184 (621)
T CHL00094 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--- 184 (621)
T ss_pred eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC---
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHH
Q psy5547 401 AAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTA 480 (714)
Q Consensus 401 ~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (714)
.+.++||||+||||||+|++++.++.++++++.|+..+||.+||+.|++|+.++|.++++.+...+++.+.+|+.+
T Consensus 185 ----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 260 (621)
T CHL00094 185 ----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEA 260 (621)
T ss_pred ----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999988888887888899999999
Q ss_pred HHHHhHhcCCCCeeEEEEecccC----CceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 481 CERAKRTLSSSTQASIEIDSLFE----GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 481 ~e~~K~~ls~~~~~~i~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
||++|+.||......+.++.+.. +.++...|+|++|++++.++++++..+|+++|+++++...+|+.|+||||+||
T Consensus 261 aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssr 340 (621)
T CHL00094 261 AEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTR 340 (621)
T ss_pred HHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccC
Confidence 99999999998888888876543 24688899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccc
Q psy5547 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLC 636 (714)
Q Consensus 557 ~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~ 636 (714)
+|+|++.|++.| +..+....||+++||+|||++|+.+++. ++++.+.|++|++||++..+|.+.++||+||.+|+
T Consensus 341 iP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~ 415 (621)
T CHL00094 341 IPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPT 415 (621)
T ss_pred ChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeeeceeeeeeccCCEEEEEEeCCCccce
Confidence 999999999999 5677888999999999999999999874 57889999999999999999999999999999987
Q ss_pred cc---------ccc-eeeeeeec---------CCCcc----c---CCCCccc-------ccceeeeee---------eEE
Q psy5547 637 LD---------EVT-ASISMLTG---------YPGLC----L---PSGSQLV-------REDKINITK---------TVI 674 (714)
Q Consensus 637 ~d---------~~t-~~i~~~~~---------y~g~~----~---p~g~~~~-------~~~~l~~~~---------~~~ 674 (714)
.. +++ ..+.++.| +.|.| + |+|.+.+ .++.|.++. .++
T Consensus 416 ~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~ 495 (621)
T CHL00094 416 KKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSIT 495 (621)
T ss_pred eeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeee
Confidence 43 333 45555554 22333 2 3444323 677777543 344
Q ss_pred EEeccccccHHHHHHHHHHhhhhhhhhhh
Q psy5547 675 FVSCSQRRCIERYVEMIAIAGRCTRHRRM 703 (714)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (714)
+. ...+++.++|++|+++++++..+++.
T Consensus 496 i~-~~~~ls~~~i~~~~~~~~~~~~~d~~ 523 (621)
T CHL00094 496 IQ-GASTLPKDEVERMVKEAEKNAAEDKE 523 (621)
T ss_pred ec-cchhccHHHHHHHHHHHHHhhhcchh
Confidence 44 34579999999999999988775443
No 18
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.5e-51 Score=471.88 Aligned_cols=376 Identities=45% Similarity=0.700 Sum_probs=319.0
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
+..++|+++++++|++|++.++.+++..+.++|||||++|+..||++|++||+.||++++++++||+|||++|+.....
T Consensus 107 ~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~- 185 (602)
T PF00012_consen 107 SKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD- 185 (602)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS-
T ss_pred ceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccccccccceeecccccccccccccccc-
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHH
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRT 479 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (714)
.++++||||+||||+|++++++.++.+++++..++..+||.+||+.|++++.+++..+++.+...+++.+.+|+.
T Consensus 186 -----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~ 260 (602)
T PF00012_consen 186 -----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLE 260 (602)
T ss_dssp -----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHH
T ss_pred -----cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999998888888888999999999
Q ss_pred HHHHHhHhcCC--CCeeEEEEecccC-CceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 480 ACERAKRTLSS--STQASIEIDSLFE-GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 480 ~~e~~K~~ls~--~~~~~i~i~~~~~-~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
+||++|+.||. .....+.++.+.+ |.++.+.|||++|++++.++++++..+|.++|++++....+|+.|+||||+||
T Consensus 261 ~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr 340 (602)
T PF00012_consen 261 AAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSR 340 (602)
T ss_dssp HHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGG
T ss_pred cccccccccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccceeEEecCccc
Confidence 99999999999 6677777777776 88999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeCCeeEEeeCCCCCccc
Q psy5547 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLC 636 (714)
Q Consensus 557 ~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~g~~~~~i~~~t~~~~ 636 (714)
+|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++. +...++.+.|++|++|||+..+|.+.+++|+|+.+|+
T Consensus 341 ~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~ 417 (602)
T PF00012_consen 341 IPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPS 417 (602)
T ss_dssp SHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSE
T ss_pred chhhhhhhhhccc-cccccccccccccccccccchhhhccc--ccccccccccccccccccccccccccccccccccccc
Confidence 9999999999995 778888999999999999999999875 4567888999999999999999999999999999886
Q ss_pred ccc---------cc-eeeeeeecCC---------Ccc-------cCCCCccc-------ccceeeeee---------eEE
Q psy5547 637 LDE---------VT-ASISMLTGYP---------GLC-------LPSGSQLV-------REDKINITK---------TVI 674 (714)
Q Consensus 637 ~d~---------~t-~~i~~~~~y~---------g~~-------~p~g~~~~-------~~~~l~~~~---------~~~ 674 (714)
... .+ -.+.++.|-. |.+ .|+|.+.+ .+|.|.++. .++
T Consensus 418 ~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~ 497 (602)
T PF00012_consen 418 KKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVT 497 (602)
T ss_dssp EEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEE
T ss_pred ccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccc
Confidence 432 22 2333444321 111 34554433 666666443 455
Q ss_pred EEeccccccHHHHHHHHHHhhhhhhhhhhhh
Q psy5547 675 FVSCSQRRCIERYVEMIAIAGRCTRHRRMRY 705 (714)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (714)
+..... ++++++++|.+..++.+.+++.+-
T Consensus 498 v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~ 527 (602)
T PF00012_consen 498 VKKKET-LSKEEIEELKKKLEEMDEEDEERR 527 (602)
T ss_dssp EESSSS-SCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccc-cccccccccccccchhhhhhhhhh
Confidence 555555 999999999999988887655543
No 19
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.6e-49 Score=451.00 Aligned_cols=327 Identities=74% Similarity=1.152 Sum_probs=299.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++++++++|+.|+|||||||||+||++|+++|++.++..++|||||||+|||++|+++++...++++++.+.
T Consensus 317 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~ 396 (653)
T PTZ00009 317 QPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLL 396 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEE
Confidence 57899999999999999999999999999999999999998778889999999999999999999977656788999999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++|++|+++|++++.+|++..++|+.+.+.+|||++....+|..||++.+.++++.++|.++|
T Consensus 397 dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 397 DVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred eecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|++|.||+|+|++.+..+++...+.+.....++++++++++++.+.++..+|+..+++.+++|+||+|||++|++|.
T Consensus 477 ~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 477 EVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQ 556 (653)
T ss_pred EEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999998888888766678999999999999999999999999999999999999999999997
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhc--CCCCCCCCCC-CCC-----
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA--GGAPGGFPGA-PGA----- 313 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~--~~rp~~~~~~-~~~----- 313 (714)
++.+.+++++++++++.+.++++++||+++++++.++|++|+++|+++++||..|++.. ++.|...++- |++
T Consensus 557 ~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (653)
T PTZ00009 557 DEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGA 636 (653)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Confidence 65699999999999999999999999998888999999999999999999999998754 4566555533 333
Q ss_pred -CCCCCCCCCCccchh
Q psy5547 314 -APGAGAGPGPTIEEV 328 (714)
Q Consensus 314 -~~~~~~~~~~s~eev 328 (714)
+|+.++.+|+|+||+
T Consensus 637 ~~~~~~~~~~~~~~~~ 652 (653)
T PTZ00009 637 GPAGAGASSGPTVEEV 652 (653)
T ss_pred CCCCCCCCCCCccccC
Confidence 344456677888875
No 20
>KOG0101|consensus
Probab=100.00 E-value=4.3e-47 Score=407.94 Aligned_cols=298 Identities=82% Similarity=1.215 Sum_probs=289.1
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceee
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 80 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~ 80 (714)
++|++.+|+++++.+.+|+.|+|||||||+|++|..|+++|+++.+..++||||+||+|||++||.+++.....+.++++
T Consensus 318 ~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~l 397 (620)
T KOG0101|consen 318 LEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLL 397 (620)
T ss_pred HHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999887777899999
Q ss_pred eeeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcce
Q psy5547 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 160 (714)
Q Consensus 81 ~dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~ 160 (714)
.|+.|.++|++..++.|.++|++|+.+|+.++.+|+++.|+|+.+.+.||||++..+.+|..+|.|.+.++|+.|.|.+.
T Consensus 398 id~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~ 477 (620)
T KOG0101|consen 398 IDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ 477 (620)
T ss_pred eecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccc
Q psy5547 161 IEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240 (714)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L 240 (714)
|+++|.+|.||+|+|++.++.+|+...+++++..+.++++++.++....+++..+|...+.+.+++|.||+|+|+++..+
T Consensus 478 IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~ 557 (620)
T KOG0101|consen 478 IEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATV 557 (620)
T ss_pred eeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhc
Q psy5547 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300 (714)
Q Consensus 241 ~~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~ 300 (714)
+++. +.++++++.++...+.++..||+.+..+.+++|++|.++|+..+.||+.++++.
T Consensus 558 ~~~~--~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 558 EDEK--GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhhc--cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 8743 899999999999999999999999988889999999999999999999999887
No 21
>KOG0103|consensus
Probab=100.00 E-value=2.6e-46 Score=396.50 Aligned_cols=376 Identities=36% Similarity=0.550 Sum_probs=327.4
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccc
Q psy5547 318 GAGPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKK 397 (714)
Q Consensus 318 ~~~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~ 397 (714)
+..+.++|++|+||||.+|+..++..+..++.++||+||+||++.||+++.+||+.|||+++++++|.+|+|++|+...+
T Consensus 107 ge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKt 186 (727)
T KOG0103|consen 107 GEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKT 186 (727)
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHH
Q psy5547 398 VGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRL 477 (714)
Q Consensus 398 ~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 477 (714)
.......++.+++++|+|.+.+.+|++.|..|.+.++++.++..+||.+||+.|.+|+..+|+.+|+.+...++++..||
T Consensus 187 DLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL 266 (727)
T KOG0103|consen 187 DLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRL 266 (727)
T ss_pred cCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHH
Confidence 65555566889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCc
Q psy5547 478 RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 557 (714)
Q Consensus 478 ~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 557 (714)
+..||+.|+.||.+......+++++.+.+.+..|+|++|++++.|+++++..++.++|+++++...||+.|.+|||+||+
T Consensus 267 ~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sri 346 (727)
T KOG0103|consen 267 LAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRI 346 (727)
T ss_pred HHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEe-----CCeeEEeeCCCC
Q psy5547 558 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA-----GGFELTSIPPAT 632 (714)
Q Consensus 558 p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~-----~g~~~~~i~~~t 632 (714)
|.|++.|.++| +..+.+++|.++|||+|||++.|+++.. ++++...++|+.|++|.+... ++....++|+|.
T Consensus 347 paike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~--frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~ 423 (727)
T KOG0103|consen 347 PAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPT--FRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGH 423 (727)
T ss_pred hHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcc--ccceecceecccceeEEEEeccccccCCCceeeecCCC
Confidence 99999999999 8999999999999999999999999987 788899999999999988853 355588999999
Q ss_pred Ccccccccc----eeeeeeecCCC-cccCCCCccc-----------c---c--ceeeee---eeEEEEeccccccHHHHH
Q psy5547 633 SRLCLDEVT----ASISMLTGYPG-LCLPSGSQLV-----------R---E--DKINIT---KTVIFVSCSQRRCIERYV 688 (714)
Q Consensus 633 ~~~~~d~~t----~~i~~~~~y~g-~~~p~g~~~~-----------~---~--~~l~~~---~~~~~~~~~~~~~~~~~~ 688 (714)
..|+.+-.| .++++.--|.+ .-+|...+.+ + . .++++. .+|......-+..+.+++
T Consensus 424 ~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~ve 503 (727)
T KOG0103|consen 424 PSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVE 503 (727)
T ss_pred CCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchh
Confidence 988655443 34444333433 2345333333 1 1 122211 155555666777788888
Q ss_pred HHHHHhhh
Q psy5547 689 EMIAIAGR 696 (714)
Q Consensus 689 ~~~~~~~~ 696 (714)
+..+++.+
T Consensus 504 ev~~~~~e 511 (727)
T KOG0103|consen 504 EVPEEPME 511 (727)
T ss_pred ccccchhh
Confidence 63333433
No 22
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.4e-45 Score=413.94 Aligned_cols=291 Identities=51% Similarity=0.774 Sum_probs=274.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++++++++||.|+|||||||||+||+.|+++|++.++.+++|||||||+|||++|+++++. ++++.+.
T Consensus 312 ~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 387 (653)
T PRK13411 312 EPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLL 387 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeee
Confidence 688999999999999999999999999999999999999987888999999999999999999999653 6789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++|++|+++|++++..|++..++|+.+.+.+|||++..+.+|..+|.+.+.++++.+.|.++|
T Consensus 388 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i 467 (653)
T PRK13411 388 DVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQI 467 (653)
T ss_pred ecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|.+|.||+|+|++.+..+++...+.+.+. .+|++++++++++++.++..+|+.++++.+++|+||+|||.+|+.|.
T Consensus 468 ~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 546 (653)
T PRK13411 468 EVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK 546 (653)
T ss_pred EEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777654 56999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhc
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~ 300 (714)
+ +.+++++++++++.+.++++++||+++ +++.++|++++++|++.+.++..++++.
T Consensus 547 ~--~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~ 602 (653)
T PRK13411 547 E--NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQ 602 (653)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 688999999999999999999999874 4688999999999999999999998764
No 23
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-44 Score=411.43 Aligned_cols=292 Identities=43% Similarity=0.707 Sum_probs=272.7
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++|+++++|+.|+|||||||||+||++|+++|| .++..++|||||||+|||++|+++++ .++++.+.
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg-~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~ 387 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP-REPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLL 387 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcC-CCcccCCCCchHHHHhHHHHHHhhcc----cccceeEE
Confidence 58899999999999999999999999999999999999995 67889999999999999999999965 36789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++||+|+++|++++..|++..++|+.+.+.||||++..+.+|..||++.|.++|+.+.|.++|
T Consensus 388 Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I 467 (668)
T PRK13410 388 DVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQV 467 (668)
T ss_pred eeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|++|.||+|+|++.+..++++..+.+... .+|++++++++++++.++..+|+.++++.+++|++|+|+|.+|++|.
T Consensus 468 ~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~ 546 (668)
T PRK13410 468 QVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLR 546 (668)
T ss_pred EEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887654 57999999999999999999999999999999999999999999996
Q ss_pred c--hhhhccCCHHHHHHHHHHHHHHHHHhhcC-CccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 242 D--EKLKDKISSAERTQILDKCNDVIKWLDSN-QLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 242 ~--~~~~~~~s~~e~~~l~~~l~e~~~WL~~~-~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
+ +.+..++++++++++..+++++++||+++ .+...+.+.+++++|+.+..++..|+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 547 DAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 35889999999999999999999999765 4556677888889999999999999988
No 24
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.6e-43 Score=401.38 Aligned_cols=289 Identities=47% Similarity=0.764 Sum_probs=268.9
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|++++++++||+.|+|||||||||+||++|+++|| ..+..++|||||||+|||++|+++++ +++++.+.
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg-~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~ 424 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTG-KDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLL 424 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhC-CCcccccCcchHHHHHHHHHHHHhcc----CccceEEE
Confidence 57999999999999999999999999999999999999995 67788999999999999999999965 36789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|++||++..++.+.++||+|+++|++++.+|++..++|+.+.+.||||++....+|..||++.|.++++.+.|.++|
T Consensus 425 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i 504 (673)
T PLN03184 425 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 504 (673)
T ss_pred ecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|.+|.||+|+|++.+..+++...+.+... .++++++++++.+++.++..+|+..+++.+++|+||+|||.+|++|.
T Consensus 505 ~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 505 EVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred EEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998888888654 56999999999999999999999999999999999999999999995
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhcC
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAG 301 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~~ 301 (714)
+ +.+++++++++++.++++++++||+++ ..+.+++++++|.+.+.++..+++...
T Consensus 584 e--~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~ 638 (673)
T PLN03184 584 E--LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQP 638 (673)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 888999999999999999999999865 457888888889888888888876543
No 25
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.4e-43 Score=403.46 Aligned_cols=288 Identities=53% Similarity=0.867 Sum_probs=270.5
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++|+++++|+.|+|||||||||+||++|+++|| .++..++|||||||+|||++|+++++. ++++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 57899999999999999999999999999999999999995 567899999999999999999999653 5789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++||+|+++|++++..|++..++|+.+.+.+|||++..+.+|..+|++.+.++++.+.|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|.+|.||+|+|++.+..+++...+.+... .+++.++++++.+++.++..+|+..+++.+++|+||+|+|.+|+.|.
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 585 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887654 56999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhc
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~ 300 (714)
+ +.+.+++++++++.+.++++++||+++ +.+++++++++|++.+.++..++++.
T Consensus 586 e--~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~ 639 (663)
T PTZ00400 586 D--LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQ 639 (663)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 889999999999999999999999865 47899999999999999999987654
No 26
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.3e-43 Score=394.77 Aligned_cols=289 Identities=45% Similarity=0.726 Sum_probs=268.9
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceee
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 80 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~ 80 (714)
+++|+++|+++|+++++||.|+|||||||||+||++|+++|| .++.+++|||||||+|||++|+++++. ++++.+
T Consensus 337 ~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l 411 (657)
T PTZ00186 337 IAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVL 411 (657)
T ss_pred HHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEE
Confidence 368999999999999999999999999999999999999995 566789999999999999999999653 578999
Q ss_pred eeeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcce
Q psy5547 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 160 (714)
Q Consensus 81 ~dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~ 160 (714)
.|++|+++|++..++.+.+|||+|+++|++++..|++..|+|+.+.+.||||++..+.+|..||+|.+.++|+.++|.++
T Consensus 412 ~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~ 491 (657)
T PTZ00186 412 LDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ 491 (657)
T ss_pred EeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccc
Q psy5547 161 IEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240 (714)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L 240 (714)
|+|+|++|.||+|+|++.++.+|++..+++.+. ..+++++++++.+..+++...|...+++.+++|++|.+++.++..+
T Consensus 492 I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 570 (657)
T PTZ00186 492 IEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQL 570 (657)
T ss_pred EEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988764 4699999999999999999999999999999999999999999998
Q ss_pred cchhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 241 ~~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
.+ . ..+++++++.+.+.+..+++||+.+ +.+.+.+++++++|++.+.++..+++.
T Consensus 571 ~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 625 (657)
T PTZ00186 571 GE--W-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQ 625 (657)
T ss_pred hh--h-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 2 4689999999999999999999843 346789999999999999999988764
No 27
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.3e-43 Score=398.13 Aligned_cols=287 Identities=53% Similarity=0.817 Sum_probs=269.4
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
.+|+++|+++++++++|+.|+|||||||||.||+.|+++|| .++..++|||||||+|||++|+++++ .++++.+.
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~ 387 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLL 387 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeee
Confidence 57899999999999999999999999999999999999995 67889999999999999999999965 35789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++||+|+++|++++..|++..++|+.+.+.+|||++..+.+|..||++.+.++++.++|.++|
T Consensus 388 d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i 467 (621)
T CHL00094 388 DVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQI 467 (621)
T ss_pred eeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|++|.||+|+|++.+..+++...+.+.+. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|++|.
T Consensus 468 ~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~ 546 (621)
T CHL00094 468 EVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK 546 (621)
T ss_pred EEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999998888877643 56999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
+ +..++++++++++.+.++++++||+++ ..+++++++++|++..+++..++++
T Consensus 547 ~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 547 E--LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred H--HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 889999999999999999999999865 3579999999999999999998866
No 28
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.9e-43 Score=398.61 Aligned_cols=287 Identities=54% Similarity=0.848 Sum_probs=270.5
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++++++.+||.|+|||||||||+||+.|+++| +.++..++|||||||+|||++|+++++ +++++.+.
T Consensus 311 ~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~ 385 (627)
T PRK00290 311 EPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLL 385 (627)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeee
Confidence 5789999999999999999999999999999999999999 567889999999999999999999965 36789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++||+|+++|++++.+|++..++|+.+.+.+|||++..+.+|..||++.+.++++.++|.++|
T Consensus 386 d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i 465 (627)
T PRK00290 386 DVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQI 465 (627)
T ss_pred eccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|.+|.||+|+|++.+..+++...+.+... .++++++++++.+++.++...|+..+++.+++|+||+|+|.+|+.|.
T Consensus 466 ~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~ 544 (627)
T PRK00290 466 EVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK 544 (627)
T ss_pred EEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887654 56999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
++..++++++++++.+.++++++||+++ +.++|++++++|+++++++..|+++
T Consensus 545 --~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 545 --ELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred --HHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999999999999865 6789999999999999999999876
No 29
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=9.4e-43 Score=396.47 Aligned_cols=286 Identities=55% Similarity=0.856 Sum_probs=268.3
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++|+++.+||.|+|||||||||+||+.|+++|| .++..++|||||||+|||++|+++++. ++++.+.
T Consensus 309 ~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~ 383 (595)
T TIGR02350 309 EPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLL 383 (595)
T ss_pred HHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceee
Confidence 57899999999999999999999999999999999999996 678899999999999999999999653 6789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++|++|+++|++++.+|++..++|+.+.+.+|||++..+.+|..||.+.+.++++.++|.++|
T Consensus 384 d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i 463 (595)
T TIGR02350 384 DVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQI 463 (595)
T ss_pred ecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+++|++|.||+|+|++.+..+++...+.+... .++++++++++.+++.++...|+..+++.+++|+||+|||.+|+.|.
T Consensus 464 ~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~ 542 (595)
T TIGR02350 464 EVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK 542 (595)
T ss_pred EEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887654 56999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHH
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLY 298 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~ 298 (714)
+ +.+++++++++++.+.++++++||+++ +..++++++++|++.++++..+++
T Consensus 543 ~--~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 543 E--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 688999999999999999999999876 567899999999999999987754
No 30
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.4e-41 Score=384.05 Aligned_cols=289 Identities=39% Similarity=0.600 Sum_probs=267.4
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++++++.+|+.|+|||||||||+||++|+++|+ ..+..++|||||||+|||++|+++++ .+..+++.+.
T Consensus 297 ~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~ 373 (599)
T TIGR01991 297 SICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLL 373 (599)
T ss_pred HHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEE
Confidence 68899999999999999999999999999999999999995 55678999999999999999999954 3556789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++||+|+++|++++..|++..++|+.+.+.||||++..+.+|..||++.|.++|+.+.|.++|
T Consensus 374 dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i 453 (599)
T TIGR01991 374 DVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARI 453 (599)
T ss_pred EeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|++|.||+|+|++.+..+|++..+.+.+. ..++++++.++.+.+.++..+|...++..+++|++|+|+|.++..+.
T Consensus 454 ~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (599)
T TIGR01991 454 RVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALA 532 (599)
T ss_pred EEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877654 45999999999999999999999999999999999999999999985
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
+ +...+++++++++...++++++||+++ +.+.++++.++|++...++..+..+
T Consensus 533 ~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 533 A--DGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 556899999999999999999999865 4678999999999999998876554
No 31
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-41 Score=385.54 Aligned_cols=289 Identities=37% Similarity=0.600 Sum_probs=268.0
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|++++++++||+.|+|||||||||+||+.|+++|| ..+..++|||||||+|||++|+++++. +..+++.+.
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~ 389 (616)
T PRK05183 313 LACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLL 389 (616)
T ss_pred HHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEE
Confidence 57899999999999999999999999999999999999996 456678999999999999999999543 456789999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++||+|+++|++++..|++..++|+.+.+.||||++..+.+|..||++.|.++|+.+.|.++|
T Consensus 390 dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i 469 (616)
T PRK05183 390 DVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARI 469 (616)
T ss_pred eeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|++|.||+|+|++.+..+|++..+.+.+. ..+++++++++.+.+.++...|...+++.+++|++|.|+|.++..+.
T Consensus 470 ~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 548 (616)
T PRK05183 470 RVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALA 548 (616)
T ss_pred EEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888654 45999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
+ ....+++++++++.+.++++++||+.+ +.+.+++++++|++.+.++..+..+
T Consensus 549 ~--~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 549 A--DGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 346789999999999999999999865 5689999999999999999986654
No 32
>KOG0104|consensus
Probab=100.00 E-value=5.6e-42 Score=363.85 Aligned_cols=298 Identities=35% Similarity=0.556 Sum_probs=278.4
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccC
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVG 399 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~ 399 (714)
...|++|+++||+|.+.+..++.+...++.++|||||.+|++.+|+++.+|+++||++++.+|++-.|||+.|+..+...
T Consensus 130 ~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~ 209 (902)
T KOG0104|consen 130 QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKE 209 (902)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred CCCCCCCcEEEEEEeCCceEEEEEEEEe-------C---CEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhcc--Cc
Q psy5547 400 SAAGSGERNVLIFDLGGGTFDVSILTIE-------D---GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK--DL 467 (714)
Q Consensus 400 ~~~~~~~~~vlVvD~GggT~Dvsv~~~~-------~---~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~--~~ 467 (714)
......+++|||||+|.|..+++.+. + ..+++++++.+..+||..|.++|.+|+.+.|.+.++. ++
T Consensus 210 --i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv 287 (902)
T KOG0104|consen 210 --INETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDV 287 (902)
T ss_pred --CCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 22357899999999999999999884 1 4688999999999999999999999999999987754 67
Q ss_pred cccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccce
Q psy5547 468 TTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHD 547 (714)
Q Consensus 468 ~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 547 (714)
..+++++.+|.++|+++|..||.+..+.+.|+++.++.||...|||++|+++|.++..++..+|.++|..+.++-++|+.
T Consensus 288 ~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ 367 (902)
T KOG0104|consen 288 HTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQ 367 (902)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhhe
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCCCcccccceEEEEeecceeEEEEeC
Q psy5547 548 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 621 (714)
Q Consensus 548 ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~~~~~~~~~~~~~v~~~sigi~~~~ 621 (714)
|+|.||++|+|.||+.|.++.+...+...+|.|+|++.||+++||.|+.. ++++.+.+.|.++++|-++-.+
T Consensus 368 ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSks--FKvKpf~V~D~~~yp~~v~f~~ 439 (902)
T KOG0104|consen 368 VILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKS--FKVKPFNVVDASVYPYLVEFET 439 (902)
T ss_pred eEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccc--ccccceeeeecccccEEEEecc
Confidence 99999999999999999999988889999999999999999999999865 8899999999999888887543
No 33
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.8e-40 Score=372.04 Aligned_cols=278 Identities=34% Similarity=0.536 Sum_probs=252.0
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|++++ +.+||.|+|||||||||+||++|+++|| .++..++|||||||+|||++|+++++. ..++.+.
T Consensus 295 ~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~ 367 (595)
T PRK01433 295 NIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFK-VDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLI 367 (595)
T ss_pred HHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhC-CCceecCCchHHHHHHHHHHHHHhhCC----ccceEEE
Confidence 68999999999 7899999999999999999999999995 567789999999999999999999653 3578899
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|++..++.+.++|++|+++|++++..|++..++|+.+.+.+|||++..+.+|..||+|.+.++|+.++|.++|
T Consensus 368 Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i 447 (595)
T PRK01433 368 DVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRA 447 (595)
T ss_pred EecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+|+|++|.||+|+|++.+..+|++..+.+... ..+++++++++.+.++++...|...++..+++|++|+++|.++..++
T Consensus 448 ~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (595)
T PRK01433 448 EVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA 526 (595)
T ss_pred EEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888755 45999999999999999999999999999999999999999999996
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhH
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNP 292 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~ 292 (714)
+ +...+++++++.+.+.+++.++||+.+ +...+++++++|++...+
T Consensus 527 ~--~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 527 E--LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred H--hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 4 667789999999999999999999755 334555555555554444
No 34
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=4.8e-39 Score=348.17 Aligned_cols=258 Identities=25% Similarity=0.357 Sum_probs=218.5
Q ss_pred CccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCC-----HHHHHH---HHHHHHHcCCCeeEeeechhHHHHHhhc
Q psy5547 323 PTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFN-----DSQRQA---TKDSGTIAGLNVLRIINEPTAAAIAYGL 394 (714)
Q Consensus 323 ~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~-----~~~r~~---l~~A~~~AGl~~~~li~Ep~AAa~~~~~ 394 (714)
..+|++++++|++|++.++.++|.++.++|||||++|+ +.||++ |++||+.||++.+.+++||+|||++|+.
T Consensus 124 ~~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~ 203 (450)
T PRK11678 124 ALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEA 203 (450)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcc
Confidence 34899999999999999999999999999999999998 677665 7999999999999999999999999975
Q ss_pred ccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCC-------EEEEEEecCCCCccHHHHHHHHH-HHHHHHHHHh----
Q psy5547 395 DKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDG-------IFEVKSTAGDTHLGGEDFDNRMV-NHFVQEFKRK---- 462 (714)
Q Consensus 395 ~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~-------~~~v~~~~g~~~lGG~~id~~l~-~~l~~~~~~~---- 462 (714)
... .++.+||+|+||||+|+|++++.++ ..+++++.| ..+||.+||..|+ +++...|...
T Consensus 204 ~~~-------~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~ 275 (450)
T PRK11678 204 TLT-------EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETE 275 (450)
T ss_pred ccC-------CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhc
Confidence 432 5788999999999999999999653 357888888 6899999999998 6777666411
Q ss_pred hccC-----------------------------------ccccHHHH------------HHHHHHHHHHhHhcCCCCeeE
Q psy5547 463 YKKD-----------------------------------LTTNKRAL------------RRLRTACERAKRTLSSSTQAS 495 (714)
Q Consensus 463 ~~~~-----------------------------------~~~~~~~~------------~~l~~~~e~~K~~ls~~~~~~ 495 (714)
.+.+ ...++..+ .+|+.+||++|+.||....+.
T Consensus 276 ~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~ 355 (450)
T PRK11678 276 KGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETR 355 (450)
T ss_pred cCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceE
Confidence 0100 00122222 368899999999999999999
Q ss_pred EEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccC
Q psy5547 496 IEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 575 (714)
Q Consensus 496 i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~ 575 (714)
+.++.+. .++...|||++|+++++++++++..+++++|++++.. ++.|+||||+|++|+|++.|++.|++.++.
T Consensus 356 i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~- 429 (450)
T PRK11678 356 ASLDFIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV- 429 (450)
T ss_pred EEecccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-
Confidence 8887654 3567999999999999999999999999999999875 489999999999999999999999766655
Q ss_pred CCCCchhhHhhHHHHHHHH
Q psy5547 576 SINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 576 ~~~p~~ava~GAa~~a~~l 594 (714)
..+|.++||.|+|++|+.+
T Consensus 430 ~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 430 GGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred eCCCcchHHHHHHHHHHhh
Confidence 4599999999999999754
No 35
>KOG0103|consensus
Probab=100.00 E-value=6.5e-39 Score=340.34 Aligned_cols=297 Identities=27% Similarity=0.486 Sum_probs=254.9
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
.|+.++|++++|+.+||+.|++|||+||||.|+++|+++| ++.+++++|.|||||+|||++||++ +|.|++++|.++
T Consensus 318 ~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIl--SP~frVRef~v~ 394 (727)
T KOG0103|consen 318 VPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAIL--SPTFRVREFSVE 394 (727)
T ss_pred HHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhc--Cccccceeccee
Confidence 4889999999999999999999999999999999999999 6899999999999999999999999 889999999999
Q ss_pred eeceeeeEEEEcC-----CeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeecc-ccccccCcceeEEEEecCCCCC
Q psy5547 82 DVTPLSLGIETAG-----GVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE-RAMTKDNNLLGKFELTSIPPAP 155 (714)
Q Consensus 82 dv~~~~i~~~~~~-----~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~-~~~~~~~~~i~~~~i~~~~~~~ 155 (714)
|+.||+|.+.+.. +....+||+|.++|.++..+|.... .+.+..++.. ...+.....|++|++.++.+..
T Consensus 395 Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~ 470 (727)
T KOG0103|consen 395 DIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSE 470 (727)
T ss_pred cccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCc
Confidence 9999999988643 4457899999999999999987542 2555555554 4455567889999999988776
Q ss_pred C-CcceEEEEEEecCCeeEEEEEeeccccc--------------------------------ccceeecC-CCCCCCHHH
Q psy5547 156 R-GVPQIEVTFDIDANGILNVSAIEKSTGK--------------------------------ENKITITN-DRGRLSKED 201 (714)
Q Consensus 156 ~-g~~~i~v~~~~d~~G~l~v~~~~~~~~~--------------------------------~~~~~i~~-~~~~ls~ee 201 (714)
. ...+++|+..+|.+|+..++..-..... ...+.+.. ..+.++..+
T Consensus 471 ~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~ 550 (727)
T KOG0103|consen 471 DGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDE 550 (727)
T ss_pred cccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHH
Confidence 6 4568999999999999988642110000 00111111 224689999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccccchhhhccCCHHHHHHHHHHHHHHHHHh-hcCCccCHHHHH
Q psy5547 202 IERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWL-DSNQLAEKEEFE 280 (714)
Q Consensus 202 i~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~~~~~~~~~s~~e~~~l~~~l~e~~~WL-~~~~~a~~~~~~ 280 (714)
+....+++.+|..+|+...++..++|.||+|||++|++|.+ .|.+|+++++++.|...|+++++|| ++|++.++..|.
T Consensus 551 l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~ 629 (727)
T KOG0103|consen 551 LELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYV 629 (727)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHH
Confidence 99999999999999999999999999999999999999986 6999999999999999999999999 567999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCCCCCC
Q psy5547 281 DKQKELEAICNPIITKLYQAGGAPGGFP 308 (714)
Q Consensus 281 ~k~~eL~~~~~~i~~r~~~~~~rp~~~~ 308 (714)
.|+.+|+.+++ ..|+.+...||.++.
T Consensus 630 ~kl~elk~~g~--~~r~~e~~~r~k~~d 655 (727)
T KOG0103|consen 630 AKLEELKKLGD--KKRFDENEERPKAFD 655 (727)
T ss_pred HHHHHHHhhhh--hhhhhhhhhhhHHHH
Confidence 99999999999 889999999998777
No 36
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=5.2e-38 Score=361.48 Aligned_cols=289 Identities=45% Similarity=0.788 Sum_probs=263.1
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceeee
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLL 81 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~ 81 (714)
++|+++|+++++++++|+.|+||||+||+|+||+.|++.|+ ..+..++|||+|||+|||++|+.+++ .++++++.+.
T Consensus 313 ~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~ 389 (602)
T PF00012_consen 313 EPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKII 389 (602)
T ss_dssp HHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCES
T ss_pred cccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--cccccccccc
Confidence 57899999999999999999999999999999999999996 78889999999999999999999954 3678899999
Q ss_pred eeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcceE
Q psy5547 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161 (714)
Q Consensus 82 dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~i 161 (714)
|++|+++|+...++.+..++++|+++|...+..|++..++|+.+.+.+|+|+.....++..||++.+.++++.+.|.++|
T Consensus 390 d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i 469 (602)
T PF00012_consen 390 DVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKI 469 (602)
T ss_dssp EBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEE
T ss_pred ccccccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred EEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccc
Q psy5547 162 EVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241 (714)
Q Consensus 162 ~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L~ 241 (714)
+++|++|.+|+|+|++.+...+....+.+..... ++++++.+++++++++...|+.+++..+++|+||+++|++|+.++
T Consensus 470 ~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~ 548 (602)
T PF00012_consen 470 KVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLE 548 (602)
T ss_dssp EEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888777655 899999999999999999999999999999999999999999997
Q ss_pred chhhhccCCHHHHHHHHHHHHHHHHHhhcC-CccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 242 DEKLKDKISSAERTQILDKCNDVIKWLDSN-QLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 242 ~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~-~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
+. .++++++++ .+.+++..+||++. ..++.++|++|+++|++..+||..|+++
T Consensus 549 ~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 549 ED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp CC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 64 677887777 78899999999664 5677999999999999999999999864
No 37
>KOG0102|consensus
Probab=100.00 E-value=2.4e-39 Score=333.33 Aligned_cols=292 Identities=48% Similarity=0.781 Sum_probs=271.7
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceee
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 80 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~ 80 (714)
|+|++++|++|+++.+||+.|+||||.||||+||+.+.++| ++.++..+||||+||.|||++++.|++ .|+++++
T Consensus 337 i~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~g----eVkdvlL 411 (640)
T KOG0102|consen 337 IEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSG----EVKDVLL 411 (640)
T ss_pred hhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhc----cccceee
Confidence 58999999999999999999999999999999999999999 577889999999999999999999976 4899999
Q ss_pred eeeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcce
Q psy5547 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 160 (714)
Q Consensus 81 ~dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~ 160 (714)
.||+|.++|+++-++.+..|+++|+.||+.++..|.+..|+|+.+.+.|++|++....+|..+|.|.+.++||.|+|.+.
T Consensus 412 LdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpq 491 (640)
T KOG0102|consen 412 LDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQ 491 (640)
T ss_pred eecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccc
Q psy5547 161 IEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240 (714)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L 240 (714)
|+|+|.+|.||+++|++.++.+++...+++....+ |++.+++.+....+++...|+.++++.+..|..++++|.....+
T Consensus 492 ieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~ 570 (640)
T KOG0102|consen 492 IEVTFDIDANGIGTVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL 570 (640)
T ss_pred eeEEEeecCCceeeeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh
Confidence 99999999999999999999999999999988754 99999999999999999999999999999999999999999998
Q ss_pred cchhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhc
Q psy5547 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300 (714)
Q Consensus 241 ~~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~ 300 (714)
.. +.+..+.++..++...+.+..+.+..-...+-++.+.+...|++..-++..-++..
T Consensus 571 ~~--~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~ 628 (640)
T KOG0102|consen 571 KE--FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKN 628 (640)
T ss_pred hh--hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhh
Confidence 65 77888888888999999999888853222234788888899999888888877764
No 38
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=320.01 Aligned_cols=286 Identities=54% Similarity=0.838 Sum_probs=269.5
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceee
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 80 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~ 80 (714)
++|++.+|+++++++.+|+.|+||||+||||+||+.|+++|+ +++.+++||||+||.|||++|+.+++.. .++++
T Consensus 293 ~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~----~d~ll 367 (579)
T COG0443 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEV----PDVLL 367 (579)
T ss_pred HHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCcc----cCceE
Confidence 368999999999999999999999999999999999999996 8889999999999999999999996653 38999
Q ss_pred eeeceeeeEEEEcCCeEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCCCCCCCcce
Q psy5547 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQ 160 (714)
Q Consensus 81 ~dv~~~~i~~~~~~~~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~~~~~g~~~ 160 (714)
.|++|+++|++..++.+..++++|+.+|.++...|++..|+|..+.+.+++|+.....+|..+|.|.+.++|+.+.|.+.
T Consensus 368 ~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~ 447 (579)
T COG0443 368 LDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQ 447 (579)
T ss_pred EeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEeecccccccceeecCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccc
Q psy5547 161 IEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240 (714)
Q Consensus 161 i~v~~~~d~~G~l~v~~~~~~~~~~~~~~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~arN~LEs~iy~~r~~L 240 (714)
|+++|.+|.||+++|++.++.++++..+++....+ ++++++..+.+....+...|...++..+.+|..+.++|.++..|
T Consensus 448 i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l 526 (579)
T COG0443 448 IEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKAL 526 (579)
T ss_pred eEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877 99999999999999999999999999999999999999999998
Q ss_pred cchhhhccCCHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 241 ~~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
.+. . .++++++.++.+.+.+++.||+. + .++++.+.++|+....++..++++
T Consensus 527 ~~~--~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 527 KEI--V-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred hhh--c-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 763 3 89999999999999999999987 2 889999999999999988877654
No 39
>KOG0104|consensus
Probab=100.00 E-value=1.4e-33 Score=300.12 Aligned_cols=299 Identities=26% Similarity=0.432 Sum_probs=245.0
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCCCcccccceee
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLL 80 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~ 80 (714)
++||++||++|+++.+||+.|+|+||+||||.||+.|.+++|.+++++++|+|||+|+||+|+||.| +.+|+++++.+
T Consensus 348 ~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~L--SksFKvKpf~V 425 (902)
T KOG0104|consen 348 VEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHL--SKSFKVKPFNV 425 (902)
T ss_pred hhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhh--cccccccceee
Confidence 4799999999999999999999999999999999999999998999999999999999999999999 66799999999
Q ss_pred eeeceeeeEEEEcCC--------eEEEEEecCCCCCeeEEEEEEeccCCCCeEEEEEeeccccccccCcceeEEEEecCC
Q psy5547 81 LDVTPLSLGIETAGG--------VMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIP 152 (714)
Q Consensus 81 ~dv~~~~i~~~~~~~--------~~~~l~~~~~~iP~~~~~~~~~~~~~q~~~~~~v~eg~~~~~~~~~~i~~~~i~~~~ 152 (714)
.|..+|++.+..... ....+|++|.++|...+.+|+.+.++ +.+.+-.+.-. ..+.++.++++.
T Consensus 426 ~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~velsgV~ 497 (902)
T KOG0104|consen 426 VDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTVELSGVK 497 (902)
T ss_pred eecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEEEEecch
Confidence 999999988875543 22348999999999998888876665 32333222110 234577888775
Q ss_pred CCCC-------CcceEEEEEEecCCeeEEEEEeeccccc--------------------------------c--------
Q psy5547 153 PAPR-------GVPQIEVTFDIDANGILNVSAIEKSTGK--------------------------------E-------- 185 (714)
Q Consensus 153 ~~~~-------g~~~i~v~~~~d~~G~l~v~~~~~~~~~--------------------------------~-------- 185 (714)
..-+ ....|.++|.+|.+|++.|+..+....+ +
T Consensus 498 d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~e 577 (902)
T KOG0104|consen 498 DALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAEEKGLE 577 (902)
T ss_pred HHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhhhhccC
Confidence 4321 1335899999999999988643211000 0
Q ss_pred -----c-------------------------------------ceeecC---CCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q psy5547 186 -----N-------------------------------------KITITN---DRGRLSKEDIERMVNDAEKYKAEDEKQK 220 (714)
Q Consensus 186 -----~-------------------------------------~~~i~~---~~~~ls~eei~~~~~~~~~~~~~D~~~~ 220 (714)
. .+.+.. +...|.+..+.....+++.+..+|+.+.
T Consensus 578 p~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~ 657 (902)
T KOG0104|consen 578 PSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKS 657 (902)
T ss_pred ccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHH
Confidence 0 011111 1124788889999999999999999999
Q ss_pred HHHHHHhhHHHHHHhhhccccchhhhccCCHHHHHHHHHHHHHHHHHh-hcCCccCHHHHHHHHHHHHHhhhHHHHHHHh
Q psy5547 221 AVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWL-DSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299 (714)
Q Consensus 221 ~~~~arN~LEs~iy~~r~~L~~~~~~~~~s~~e~~~l~~~l~e~~~WL-~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~ 299 (714)
+++++.|.||+|+|++.++|.++.|.++.+++|+..|.+.+....+|| +++.+++++.|.+++.+|+++...+..|..+
T Consensus 658 ~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee 737 (902)
T KOG0104|consen 658 EREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEE 737 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999 4567788999999999999999999999999
Q ss_pred cCCCCCCCCC
Q psy5547 300 AGGAPGGFPG 309 (714)
Q Consensus 300 ~~~rp~~~~~ 309 (714)
...+|.++++
T Consensus 738 ~kq~pe~l~~ 747 (902)
T KOG0104|consen 738 RKQFPEELEA 747 (902)
T ss_pred HHhhhHHHHH
Confidence 9999976554
No 40
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=2.3e-30 Score=274.70 Aligned_cols=245 Identities=22% Similarity=0.341 Sum_probs=197.4
Q ss_pred cchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCC
Q psy5547 325 IEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGS 404 (714)
Q Consensus 325 ~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~ 404 (714)
..++...+|+++.+.+....+.....+|||||++|+..+|+++.+|++.||++.+.+++||+|||++|+.+..
T Consensus 72 d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~------- 144 (336)
T PRK13928 72 DYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS------- 144 (336)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-------
Confidence 3356677788887655433223445799999999999999999999999999999999999999999987533
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHH
Q psy5547 405 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 484 (714)
Q Consensus 405 ~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 484 (714)
++..++|||+||||||++++.... .. ..++.++||.+||+.|.+++.+++..... ...||++
T Consensus 145 ~~~~~lVvDiGggttdvsvv~~g~-~~----~~~~~~lGG~did~~i~~~l~~~~~~~~~-------------~~~ae~l 206 (336)
T PRK13928 145 QPSGNMVVDIGGGTTDIAVLSLGG-IV----TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-------------ERTAEEI 206 (336)
T ss_pred CCCeEEEEEeCCCeEEEEEEEeCC-EE----EeCCcCCHHHHHHHHHHHHHHHHhchhcC-------------HHHHHHH
Confidence 456689999999999999998743 21 34578999999999999999877641110 2468999
Q ss_pred hHhcCCCC----eeEEEEe--cccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcC--CCccccc-eEEEEcCCC
Q psy5547 485 KRTLSSST----QASIEID--SLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAK--MDKAQIH-DIVLVGGST 555 (714)
Q Consensus 485 K~~ls~~~----~~~i~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~ViLvGG~s 555 (714)
|+.++... ...+.+. .+..+.+..+.|++++|++++.+.++++.+.+.+.|+.++ +....++ .|+|+||+|
T Consensus 207 K~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s 286 (336)
T PRK13928 207 KIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGA 286 (336)
T ss_pred HHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECccc
Confidence 99886531 1233332 2234556778999999999999999999999999999986 3456677 799999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
++|+|+++|++.| +.++....||+++||+|||+++..+.
T Consensus 287 ~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 287 LLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred chhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhchH
Confidence 9999999999999 77888888999999999999998754
No 41
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.97 E-value=2.3e-29 Score=266.02 Aligned_cols=240 Identities=20% Similarity=0.366 Sum_probs=198.6
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCC--eEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCC
Q psy5547 327 EVSSMVLTKMKETAEAYLGKTVS--NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGS 404 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~~~~~--~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~ 404 (714)
++.+.+|++++..++..++..+. .+|||||++|+..||+++.+|++.||++.+.+++||.|||++|+.+..
T Consensus 75 d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~------- 147 (335)
T PRK13929 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD------- 147 (335)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC-------
Confidence 78899999999999888876553 799999999999999999999999999999999999999999976532
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHH
Q psy5547 405 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 484 (714)
Q Consensus 405 ~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 484 (714)
....++|+|+||||||++++.+.+ .. ..++..+||.+||+.|.+++.+.+. ... . ...||++
T Consensus 148 ~~~~~lvvDiG~gtt~v~vi~~~~-~~----~~~~~~~GG~~id~~l~~~l~~~~~----~~~--~-------~~~AE~i 209 (335)
T PRK13929 148 EPVANVVVDIGGGTTEVAIISFGG-VV----SCHSIRIGGDQLDEDIVSFVRKKYN----LLI--G-------ERTAEQV 209 (335)
T ss_pred CCceEEEEEeCCCeEEEEEEEeCC-EE----EecCcCCHHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHH
Confidence 456789999999999999998743 21 3456789999999999999986553 111 1 2579999
Q ss_pred hHhcCCCC----eeEEEEe--cccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCC--ccccc-eEEEEcCCC
Q psy5547 485 KRTLSSST----QASIEID--SLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGST 555 (714)
Q Consensus 485 K~~ls~~~----~~~i~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s 555 (714)
|+.++... ...+.+. .+..+.+..+.+++++|.+++.+.+.++.+.|.+.|+++... ...++ .|+|+||+|
T Consensus 210 K~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s 289 (335)
T PRK13929 210 KMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGA 289 (335)
T ss_pred HHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhh
Confidence 99998632 2223332 123455678899999999999999999999999999998644 35677 699999999
Q ss_pred CcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHH
Q psy5547 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 556 ~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 592 (714)
++|++.++|++.| +.++....||+++|+.||+..-.
T Consensus 290 ~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 290 LLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSLE 325 (335)
T ss_pred hhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHHH
Confidence 9999999999999 78888888999999999998743
No 42
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=1.8e-28 Score=260.65 Aligned_cols=239 Identities=23% Similarity=0.384 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcE
Q psy5547 329 SSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408 (714)
Q Consensus 329 ~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~ 408 (714)
...+|+++........ .....+|+|||++|+..+|++++.|++.||++.+.+++||.|||++|+.... ....
T Consensus 78 ~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~-------~~~~ 149 (334)
T PRK13927 78 TEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT-------EPTG 149 (334)
T ss_pred HHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc-------CCCe
Confidence 3455555555443332 2234899999999999999999999999999999999999999999976532 4566
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhc
Q psy5547 409 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 488 (714)
Q Consensus 409 vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l 488 (714)
++|||+||||||+++++.++.. ..++..+||.+||+.|.+++.+++. ... . ...+|++|+.+
T Consensus 150 ~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~----~~~--~-------~~~ae~iK~~~ 211 (334)
T PRK13927 150 SMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYN----LLI--G-------ERTAERIKIEI 211 (334)
T ss_pred EEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHh
Confidence 8999999999999999875422 3455789999999999999986653 111 1 23689999988
Q ss_pred CCCCe----eEEEE--ecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCC--ccccc-eEEEEcCCCCcHH
Q psy5547 489 SSSTQ----ASIEI--DSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIH-DIVLVGGSTRIPK 559 (714)
Q Consensus 489 s~~~~----~~i~i--~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~ 559 (714)
+.... ..+.+ +.+..+.+..+.|++++|++++.+.++++.+.|.+.|+++... ...++ .|+|+||+|++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg 291 (334)
T PRK13927 212 GSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRG 291 (334)
T ss_pred hccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhH
Confidence 75322 22333 2233455667899999999999999999999999999988643 22334 5999999999999
Q ss_pred HHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHH
Q psy5547 560 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 560 l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 594 (714)
++++|++.| +.++....+|+++||.||++++..+
T Consensus 292 l~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 292 LDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 999999999 6788888999999999999998764
No 43
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=3.8e-27 Score=249.96 Aligned_cols=240 Identities=24% Similarity=0.363 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcE
Q psy5547 329 SSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408 (714)
Q Consensus 329 ~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~ 408 (714)
...+++++........+.....+|+|||++|+..+|+++.+|++.||++.+.+++||.|||++|+.... ....
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-------~~~~ 151 (333)
T TIGR00904 79 TEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE-------EPTG 151 (333)
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc-------CCce
Confidence 344555555544332222234899999999999999999999999999999999999999999876432 4567
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhc
Q psy5547 409 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 488 (714)
Q Consensus 409 vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l 488 (714)
++|+|+||||||+++++.++.. ..++..+||.+||+.|.+++.+++. .... +..||++|+.+
T Consensus 152 ~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l 213 (333)
T TIGR00904 152 SMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYN----LLIG---------EQTAERIKIEI 213 (333)
T ss_pred EEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHhc----ccCC---------HHHHHHHHHHH
Confidence 8999999999999999875422 2456789999999999999986653 1111 24789999998
Q ss_pred CCCCe-----eEEEEec--ccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCc-ccc-c-eEEEEcCCCCcH
Q psy5547 489 SSSTQ-----ASIEIDS--LFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDK-AQI-H-DIVLVGGSTRIP 558 (714)
Q Consensus 489 s~~~~-----~~i~i~~--~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p 558 (714)
+.... ..+.+.. ...+......++++++.+++.+.++++.+.+.+.++.+.... .++ + .|+|+||+|++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ip 293 (333)
T TIGR00904 214 GSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLR 293 (333)
T ss_pred hccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchh
Confidence 75321 1222211 112334457899999999999999999999999999887542 233 3 799999999999
Q ss_pred HHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHH
Q psy5547 559 KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 559 ~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 594 (714)
+++++|++.| +.++....||+++||.||++++..+
T Consensus 294 gl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~~ 328 (333)
T TIGR00904 294 NLDKLLSKET-GLPVIVADDPLLCVAKGTGKALEDI 328 (333)
T ss_pred hHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhCH
Confidence 9999999999 7888889999999999999997653
No 44
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=8.4e-28 Score=240.49 Aligned_cols=204 Identities=22% Similarity=0.310 Sum_probs=173.0
Q ss_pred CCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCC
Q psy5547 322 GPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSA 401 (714)
Q Consensus 322 ~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~ 401 (714)
...--+..+++|++|++.++.++|.++.++|+|||++|++.||+++.+|++.||++.+.++.||.|||++|...
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34445788999999999999999999999999999999999999999999999999999999999999988532
Q ss_pred CCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHH
Q psy5547 402 AGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTAC 481 (714)
Q Consensus 402 ~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (714)
..+|+|+||||||+++++. +... . ..+..+||++||+.|.+.+. .+ ...|
T Consensus 109 ------~~~vvDiGggtt~i~i~~~--G~i~--~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~A 158 (239)
T TIGR02529 109 ------NGAVVDVGGGTTGISILKK--GKVI--Y-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEA 158 (239)
T ss_pred ------CcEEEEeCCCcEEEEEEEC--CeEE--E-EEeeecchHHHHHHHHHHhC--------CC-----------HHHH
Confidence 1499999999999999864 3222 2 34578999999998875542 11 2578
Q ss_pred HHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHH
Q psy5547 482 ERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561 (714)
Q Consensus 482 e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~ 561 (714)
|++|+.+.. .+++.+++.++++++.+.+++.|+.. +++.|+|+||+|++|+++
T Consensus 159 E~~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~ 211 (239)
T TIGR02529 159 EEYKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFA 211 (239)
T ss_pred HHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHH
Confidence 889887541 35677899999999999999999854 457899999999999999
Q ss_pred HHHHHHcCCCcccCCCCCchhhHhhHHH
Q psy5547 562 KLLQDFFNGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 562 ~~l~~~f~~~~v~~~~~p~~ava~GAa~ 589 (714)
+++++.| +.++..+.||++++|.|||+
T Consensus 212 e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 212 DVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHh-CCCcccCCCCCeehhheeec
Confidence 9999999 78888999999999999986
No 45
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=3.2e-27 Score=251.42 Aligned_cols=243 Identities=23% Similarity=0.345 Sum_probs=192.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCC
Q psy5547 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGE 406 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~ 406 (714)
+....+|+++.+.+....+.....+|+|+|++|+..+|+.+.++++.+|++.+.+++||+|||++|+.... ..
T Consensus 79 ~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~-------~~ 151 (335)
T PRK13930 79 EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT-------EP 151 (335)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC-------CC
Confidence 34677778877666554444567899999999999999999999999999999999999999999876432 24
Q ss_pred cEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhH
Q psy5547 407 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 486 (714)
Q Consensus 407 ~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 486 (714)
..++|||+||||||++++..+... ..+...+||.+||+.|.+++.+++. .... ...||++|+
T Consensus 152 ~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~----~~~~---------~~~ae~~K~ 213 (335)
T PRK13930 152 VGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYN----LLIG---------ERTAEEIKI 213 (335)
T ss_pred CceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhC----CCCC---------HHHHHHHHH
Confidence 457999999999999999874321 2456899999999999999987643 1111 247899999
Q ss_pred hcCCCCe----eEEEEe--cccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCC--ccccce-EEEEcCCCCc
Q psy5547 487 TLSSSTQ----ASIEID--SLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGSTRI 557 (714)
Q Consensus 487 ~ls~~~~----~~i~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~s~~ 557 (714)
.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+.+.+.++.+... ...++. |+|+||+|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~i 293 (335)
T PRK13930 214 EIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALL 293 (335)
T ss_pred HhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcc
Confidence 9875432 122222 122344567889999999999999999999999999987533 233454 9999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 558 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 558 p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
|+++++|++.| +.++....+|+.+++.||++.+....
T Consensus 294 pg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~~ 330 (335)
T PRK13930 294 RGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENLD 330 (335)
T ss_pred hhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhChH
Confidence 99999999999 67888888999999999999987554
No 46
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.93 E-value=1.8e-25 Score=230.32 Aligned_cols=240 Identities=25% Similarity=0.387 Sum_probs=181.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCC
Q psy5547 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGE 406 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~ 406 (714)
++...+|+++.+.+.......-..++++||+.-++.+|+++.+|+..||...+.+++||.|||+..+.+-. ..
T Consensus 72 ~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~-------~~ 144 (326)
T PF06723_consen 72 EAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF-------EP 144 (326)
T ss_dssp HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT-------SS
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC-------CC
Confidence 45666788877777654333457899999999999999999999999999999999999999999987754 46
Q ss_pred cEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhH
Q psy5547 407 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKR 486 (714)
Q Consensus 407 ~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 486 (714)
...||+|+||||||++++.. ++..... ...+||++||++|.+|+.++|+- ..=...||+.|+
T Consensus 145 ~g~miVDIG~GtTdiavisl-ggiv~s~----si~~gG~~~DeaI~~~ir~~y~l-------------~Ig~~tAE~iK~ 206 (326)
T PF06723_consen 145 RGSMIVDIGGGTTDIAVISL-GGIVASR----SIRIGGDDIDEAIIRYIREKYNL-------------LIGERTAEKIKI 206 (326)
T ss_dssp S-EEEEEE-SS-EEEEEEET-TEEEEEE----EES-SHHHHHHHHHHHHHHHHSE-------------E--HHHHHHHHH
T ss_pred CceEEEEECCCeEEEEEEEC-CCEEEEE----EEEecCcchhHHHHHHHHHhhCc-------------ccCHHHHHHHHH
Confidence 67899999999999999975 3332222 25789999999999999988741 122347899999
Q ss_pred hcCCCC----eeEEEE--ecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-cccc--ceEEEEcCCCCc
Q psy5547 487 TLSSST----QASIEI--DSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMD-KAQI--HDIVLVGGSTRI 557 (714)
Q Consensus 487 ~ls~~~----~~~i~i--~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i--~~ViLvGG~s~~ 557 (714)
.++... ...+.+ ..+..|....+.++.+++.+.+.+.+.+|.+.|+++|+..... ..|| ++|+|+||+|++
T Consensus 207 ~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l 286 (326)
T PF06723_consen 207 EIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALL 286 (326)
T ss_dssp HH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGS
T ss_pred hcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhh
Confidence 987532 223444 3456788889999999999999999999999999999987533 2233 579999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHH
Q psy5547 558 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 558 p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 592 (714)
+++.++|++.+ +.++....||..+|+.||.....
T Consensus 287 ~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 287 RGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp BTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred ccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999999 89999999999999999987653
No 47
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.93 E-value=1.5e-24 Score=221.00 Aligned_cols=202 Identities=24% Similarity=0.367 Sum_probs=172.6
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCC
Q psy5547 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSG 405 (714)
Q Consensus 326 eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~ 405 (714)
-+.....|+++++.++.++|.++..++++||++|+..+++.+.+|++.||++...+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4667788999999999999989999999999999999999999999999999999999999999987432
Q ss_pred CcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHh
Q psy5547 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 485 (714)
Q Consensus 406 ~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 485 (714)
..+|+|+||||||+++++- +... . .++.++||.+||+.|++++.-. ..+||+.|
T Consensus 136 --~~~vvDIGggtt~i~v~~~--g~~~--~-~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK 189 (267)
T PRK15080 136 --NGAVVDIGGGTTGISILKD--GKVV--Y-SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYK 189 (267)
T ss_pred --CcEEEEeCCCcEEEEEEEC--CeEE--E-EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHH
Confidence 1489999999999999853 3322 2 2467999999999998775211 24688888
Q ss_pred HhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHH
Q psy5547 486 RTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565 (714)
Q Consensus 486 ~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~ 565 (714)
+.++ +++++.+++.+.++++.+.+++.++.. +++.|+|+||+|++|++++.++
T Consensus 190 ~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~ 242 (267)
T PRK15080 190 RDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFE 242 (267)
T ss_pred hccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHH
Confidence 7753 256789999999999999999999853 5789999999999999999999
Q ss_pred HHcCCCcccCCCCCchhhHhhHHHHH
Q psy5547 566 DFFNGKELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 566 ~~f~~~~v~~~~~p~~ava~GAa~~a 591 (714)
+.| +.++..+.+|+.+++.|||+|+
T Consensus 243 ~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 243 KQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHh-CCCcccCCCchHHHHHHHHhhC
Confidence 999 7888889999999999999874
No 48
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.89 E-value=1.4e-21 Score=192.64 Aligned_cols=243 Identities=22% Similarity=0.349 Sum_probs=195.0
Q ss_pred hhhhHHHHHHHHHHHHHhC-CCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCC
Q psy5547 327 EVSSMVLTKMKETAEAYLG-KTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSG 405 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~-~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~ 405 (714)
++...+|+|+++.+...-+ .....++++||..-++.+|+++++|++.||...+.++.||.|||+..++.-. .
T Consensus 79 ~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~-------e 151 (342)
T COG1077 79 EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM-------E 151 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc-------C
Confidence 5667778888877764433 4556799999999999999999999999999999999999999998876544 2
Q ss_pred CcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHh
Q psy5547 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK 485 (714)
Q Consensus 406 ~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 485 (714)
...-+|||+||||||++++.+.+- . ......+||+.||+.+..|+.++|+-. .- ...+|+.|
T Consensus 152 p~G~mvvDIGgGTTevaVISlggi-v----~~~Sirv~GD~~De~Ii~yvr~~~nl~------IG-------e~taE~iK 213 (342)
T COG1077 152 PTGSMVVDIGGGTTEVAVISLGGI-V----SSSSVRVGGDKMDEAIIVYVRKKYNLL------IG-------ERTAEKIK 213 (342)
T ss_pred CCCCEEEEeCCCceeEEEEEecCE-E----EEeeEEEecchhhHHHHHHHHHHhCee------ec-------HHHHHHHH
Confidence 334599999999999999998442 2 122367899999999999999887621 11 12477777
Q ss_pred HhcCCCC--------eeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCC--ccccce-EEEEcCC
Q psy5547 486 RTLSSST--------QASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMD--KAQIHD-IVLVGGS 554 (714)
Q Consensus 486 ~~ls~~~--------~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~ 554 (714)
....... +.++.-..+..|..-.++++..++.+.+++.++.|.+.++..|+...-. .+-++. ++|+||+
T Consensus 214 ~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGG 293 (342)
T COG1077 214 IEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGG 293 (342)
T ss_pred HHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecch
Confidence 7765322 2334444566777888999999999999999999999999999987533 233455 9999999
Q ss_pred CCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 555 TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 555 s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
|.+..+.+.|.+.. +.++....+|-.+||.|+.+....+.
T Consensus 294 alLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 294 ALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999998 88999999999999999998887664
No 49
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.81 E-value=3.1e-19 Score=192.20 Aligned_cols=202 Identities=24% Similarity=0.329 Sum_probs=156.2
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCC
Q psy5547 350 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDG 429 (714)
Q Consensus 350 ~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~ 429 (714)
-.+++.|. ...+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||||++++.. +
T Consensus 150 v~lva~~~----~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-------~~~~~~vvDiG~gtt~i~i~~~--g 216 (371)
T TIGR01174 150 VHIITGSS----TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-------KELGVCLIDIGGGTTDIAVYTG--G 216 (371)
T ss_pred EEEEEEEH----HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-------hcCCEEEEEeCCCcEEEEEEEC--C
Confidence 34666764 577888899999999999999999999998854322 3567999999999999999964 3
Q ss_pred EEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCC------CeeEEEEecccC
Q psy5547 430 IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFE 503 (714)
Q Consensus 430 ~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~i~i~~~~~ 503 (714)
.... .....+||++||+.|.+.+. ..+.+||+.|+.++.. .+..+.++..
T Consensus 217 ~~~~---~~~i~~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~-- 272 (371)
T TIGR01174 217 SIRY---TKVIPIGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSV-- 272 (371)
T ss_pred EEEE---EeeecchHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccC--
Confidence 3221 23468999999998876531 2245799999998753 2344555443
Q ss_pred CceeEEEecHHHHHHHHHHHHhhhhhHHH-HHHHHcCCCccccce-EEEEcCCCCcHHHHHHHHHHcCCCcccC------
Q psy5547 504 GVDFYTSVTRARFEELNADLFRGTMEPVE-KSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNK------ 575 (714)
Q Consensus 504 ~~~~~~~itr~~~~~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~l~~~l~~~f~~~~v~~------ 575 (714)
+.+....+++++|++++.+.++++.+.++ +.|++++.. .+++. |+|+||+|++|++++++++.| +.++..
T Consensus 273 ~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~ 350 (371)
T TIGR01174 273 GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNI 350 (371)
T ss_pred CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCcc
Confidence 23556899999999999999999999997 999998776 56776 999999999999999999999 433311
Q ss_pred ------CCCCchhhHhhHHHH
Q psy5547 576 ------SINPDEAVAYGAAVQ 590 (714)
Q Consensus 576 ------~~~p~~ava~GAa~~ 590 (714)
..+|..++|.|.++|
T Consensus 351 ~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 351 GGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred CCchhhcCCcHHHHHHHHHhC
Confidence 126788888887764
No 50
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.78 E-value=6.1e-18 Score=184.17 Aligned_cols=205 Identities=21% Similarity=0.262 Sum_probs=152.1
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCE
Q psy5547 351 AVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGI 430 (714)
Q Consensus 351 ~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~ 430 (714)
.+++.|. ...+. +.+|++.||++...++.||.|+|.+++.+.. ++..++|+|+||||||+++++ ++.
T Consensus 159 ~lv~~~~---~~~~~-~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-------~~~gv~vvDiGggtTdisv~~--~G~ 225 (420)
T PRK09472 159 HLITCHN---DMAKN-IVKAVERCGLKVDQLIFAGLASSYAVLTEDE-------RELGVCVVDIGGGTMDIAVYT--GGA 225 (420)
T ss_pred EEEEEch---HHHHH-HHHHHHHcCCeEeeEEehhhHHHHHhcChhh-------hhcCeEEEEeCCCceEEEEEE--CCE
Confidence 3566664 34444 4679999999999999999999998865422 467799999999999999997 343
Q ss_pred EEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCC------CeeEEEEecccCC
Q psy5547 431 FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS------TQASIEIDSLFEG 504 (714)
Q Consensus 431 ~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~i~i~~~~~~ 504 (714)
+. .....++||++|++.|...+.- -...||++|+.+... ....+.++.....
T Consensus 226 l~---~~~~i~~GG~~it~dIa~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~ 283 (420)
T PRK09472 226 LR---HTKVIPYAGNVVTSDIAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR 283 (420)
T ss_pred EE---EEeeeechHHHHHHHHHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC
Confidence 22 2233789999999998765421 135789999765421 2344555533222
Q ss_pred ceeEEEecHHHHHHHHHHHHhhhhhHHHH-------HHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccC--
Q psy5547 505 VDFYTSVTRARFEELNADLFRGTMEPVEK-------SLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-- 575 (714)
Q Consensus 505 ~~~~~~itr~~~~~~~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~-- 575 (714)
....+++.+|.+++.+.++++++.+.+ .+..+++....++.|+|+||+|++|+|++++++.| +.++..
T Consensus 284 --~~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~ 360 (420)
T PRK09472 284 --PPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGA 360 (420)
T ss_pred --CCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeC
Confidence 235889999999999987777777765 44566777777899999999999999999999999 444322
Q ss_pred ----------CCCCchhhHhhHHHHHHH
Q psy5547 576 ----------SINPDEAVAYGAAVQAAI 593 (714)
Q Consensus 576 ----------~~~p~~ava~GAa~~a~~ 593 (714)
..+|..+++.|.++|+..
T Consensus 361 P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 361 PLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred CcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 248999999999999863
No 51
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.64 E-value=6.4e-15 Score=155.91 Aligned_cols=208 Identities=28% Similarity=0.432 Sum_probs=166.4
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeC
Q psy5547 349 SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIED 428 (714)
Q Consensus 349 ~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~ 428 (714)
.-.++|+|..| -+.+.+|++.+|+++..++.+|.|+|.+.+.+.. ++-.++++|+||||||+++++-
T Consensus 156 ~vhvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE-------kelGv~lIDiG~GTTdIai~~~-- 222 (418)
T COG0849 156 EVHVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDE-------KELGVALIDIGGGTTDIAIYKN-- 222 (418)
T ss_pred EEEEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc-------HhcCeEEEEeCCCcEEEEEEEC--
Confidence 34588888754 5568899999999999999999999998876544 6778999999999999999974
Q ss_pred CEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCC------eeEEEEeccc
Q psy5547 429 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST------QASIEIDSLF 502 (714)
Q Consensus 429 ~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~------~~~i~i~~~~ 502 (714)
+.+ ...+..++||++++..|+.-|...+. .||+.|....... ...+.++..
T Consensus 223 G~l---~~~~~ipvgG~~vT~DIa~~l~t~~~-------------------~AE~iK~~~g~a~~~~~~~~~~i~v~~v- 279 (418)
T COG0849 223 GAL---RYTGVIPVGGDHVTKDIAKGLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVPSV- 279 (418)
T ss_pred CEE---EEEeeEeeCccHHHHHHHHHhCCCHH-------------------HHHHHHHHcCccccCcCCCcceEecccC-
Confidence 322 23445789999999999988765543 7888888875432 333555433
Q ss_pred CCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcc--cC-----
Q psy5547 503 EGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL--NK----- 575 (714)
Q Consensus 503 ~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v--~~----- 575 (714)
|.+...++++..+.+++++.+.+++.+++..|++.+....-...|+|+||++.+|++.+..++.| +.++ -.
T Consensus 280 -g~~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if-~~~vRig~P~~~~ 357 (418)
T COG0849 280 -GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIF-GRPVRLGVPLNIV 357 (418)
T ss_pred -CCcccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhc-CCceEeCCCcccc
Confidence 33447889999999999999999999999999999998666789999999999999999999999 3222 11
Q ss_pred -----CCCCchhhHhhHHHHHHHH
Q psy5547 576 -----SINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 576 -----~~~p~~ava~GAa~~a~~l 594 (714)
..+|..+.+.|..++++..
T Consensus 358 Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 358 GLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CchhhccCchhhhhHHHHHHHhhc
Confidence 3468999999999998865
No 52
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.49 E-value=1.2e-14 Score=132.89 Aligned_cols=197 Identities=25% Similarity=0.376 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEE
Q psy5547 330 SMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNV 409 (714)
Q Consensus 330 a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~v 409 (714)
-.+.+++++.+++.+|..+.+..-++|..-.....+...+..+.||++.+.+++||+|||.-..++..
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------------ 142 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------------ 142 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------------
Confidence 45788999999999999999999999999877778888889999999999999999999976544322
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcC
Q psy5547 410 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 489 (714)
Q Consensus 410 lVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls 489 (714)
.|+|+|||||-+|+++-.+-.+ .-|...||..+.--|+-. ++.+ .+++|..|..-.
T Consensus 143 ~VVDiGGGTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k 198 (277)
T COG4820 143 GVVDIGGGTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHK 198 (277)
T ss_pred cEEEeCCCcceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccc
Confidence 7999999999999998643222 234667777766544422 1221 235666665532
Q ss_pred CCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcC
Q psy5547 490 SSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 569 (714)
Q Consensus 490 ~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~ 569 (714)
... |.=-.+.|++++..+.+.+.++..+ +.-+.|+||+|.-|.+.+.+++.|
T Consensus 199 ~~~----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l- 250 (277)
T COG4820 199 KGE----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL- 250 (277)
T ss_pred cch----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-
Confidence 211 1112357888999998988887654 567999999999999999999999
Q ss_pred CCcccCCCCCchhhHhhHHHH
Q psy5547 570 GKELNKSINPDEAVAYGAAVQ 590 (714)
Q Consensus 570 ~~~v~~~~~p~~ava~GAa~~ 590 (714)
+.++..+..|....-.|-|+.
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccccccCCCcceechhhhhhc
Confidence 888988888888777776643
No 53
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.41 E-value=3.3e-12 Score=138.02 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=146.2
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEE
Q psy5547 348 VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 348 ~~~~vitVPa~~~~~~r~~l~~A-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 426 (714)
-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++. .+.+|||+|+++|+++.+.-
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~i~pv~~ 162 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR------------TTGLVVDSGDGVTHVVPVYD 162 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC------------CeEEEEECCCCeeEEEEEEC
Confidence 46799999999998888888775 666899999999999999998753 46699999999999988753
Q ss_pred eCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCe-------------
Q psy5547 427 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ------------- 493 (714)
Q Consensus 427 ~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~------------- 493 (714)
+.. +.......++||.++|+.|.+++..+.. .... ..-...++..|+.+..-..
T Consensus 163 --G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~ 229 (371)
T cd00012 163 --GYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKET 229 (371)
T ss_pred --CEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccC
Confidence 322 2222334789999999999998865421 0000 1112345555555432100
Q ss_pred --eEEEEecccCCceeEEEecHHHHH---HHHHH-----HHhhhhhHHHHHHHHcCCC--ccccceEEEEcCCCCcHHHH
Q psy5547 494 --ASIEIDSLFEGVDFYTSVTRARFE---ELNAD-----LFRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQ 561 (714)
Q Consensus 494 --~~i~i~~~~~~~~~~~~itr~~~~---~~~~~-----~~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l~ 561 (714)
...... +.++. .+.+..+.|. .++.| ....+.+.|.+.++.+..+ ..-.+.|+|+||+|++|++.
T Consensus 230 ~~~~~~~~-lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~ 306 (371)
T cd00012 230 SLLEKTYE-LPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFG 306 (371)
T ss_pred CccceeEE-CCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHH
Confidence 000111 11222 3445544331 23333 2337788888888877543 33358899999999999999
Q ss_pred HHHHHHcC----C-----CcccCCCCCchhhHhhHHHHHHH
Q psy5547 562 KLLQDFFN----G-----KELNKSINPDEAVAYGAAVQAAI 593 (714)
Q Consensus 562 ~~l~~~f~----~-----~~v~~~~~p~~ava~GAa~~a~~ 593 (714)
++|.+.+. . ..+....+|..++-.||.++|..
T Consensus 307 ~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 307 ERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 99998873 2 23445678999999999998854
No 54
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.37 E-value=2.3e-11 Score=128.71 Aligned_cols=236 Identities=14% Similarity=0.173 Sum_probs=147.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCeE--EEeeCCCCCHHH-HHHHHHHHHHc------C------CCeeEeeechhHHHHH
Q psy5547 327 EVSSMVLTKMKETAEAYLGKTVSNA--VITVPAYFNDSQ-RQATKDSGTIA------G------LNVLRIINEPTAAAIA 391 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~~~~~~~--vitVPa~~~~~~-r~~l~~A~~~A------G------l~~~~li~Ep~AAa~~ 391 (714)
+..+.+.-.|...+.......+..+ +...|..+-..+ ++.+++..... | +..+.+++||.+|.+.
T Consensus 89 ~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~ 168 (344)
T PRK13917 89 QFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLD 168 (344)
T ss_pred hHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHH
Confidence 3344444444333333222334444 469999885444 36677655321 1 2346789999999887
Q ss_pred hhcccccCC-CCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCcccc
Q psy5547 392 YGLDKKVGS-AAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTN 470 (714)
Q Consensus 392 ~~~~~~~~~-~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~ 470 (714)
+..+..... ........++|+|+|+||||++++. ++.+. ....+....|..++.+.+.+++..+. ++... +
T Consensus 169 ~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~--~ 240 (344)
T PRK13917 169 LYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGASI--T 240 (344)
T ss_pred HHhcccCcccchhcccCcEEEEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCCC--C
Confidence 766432100 0011345789999999999999986 33332 33344578899999999988875432 11211 1
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEE
Q psy5547 471 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL 550 (714)
Q Consensus 471 ~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL 550 (714)
. .++....+.-+..+. .+.. +.+ ++++.++++.+++++...+...+.. ..+++.|+|
T Consensus 241 ~---~~ie~~l~~g~i~~~-------------~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL 297 (344)
T PRK13917 241 P---YMLEKGLEYGACKLN-------------QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIV 297 (344)
T ss_pred H---HHHHHHHHcCcEEeC-------------CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEE
Confidence 1 222222221111111 1111 222 4567778888998888888877753 347899999
Q ss_pred EcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 551 VGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 551 vGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
+||++++ +++.|++.|+.. ....||..|.|+|...+|..+.+.
T Consensus 298 ~GGGA~l--l~~~lk~~f~~~--~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 298 TGGGANI--FFDSLSHWYSDV--EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred ECCcHHH--HHHHHHHHcCCe--EEcCChHHHHHHHHHHHHHHHhcc
Confidence 9999986 899999999754 566899999999999999877654
No 55
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.32 E-value=1.3e-11 Score=133.44 Aligned_cols=234 Identities=20% Similarity=0.209 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CCeEEEeeCCCCCHHHHHHHHHHHH-HcCCCeeEeeechhHHHHHhhcccccCCCCCC
Q psy5547 328 VSSMVLTKMKETAEAYLGKT--VSNAVITVPAYFNDSQRQATKDSGT-IAGLNVLRIINEPTAAAIAYGLDKKVGSAAGS 404 (714)
Q Consensus 328 v~a~~L~~l~~~~~~~~~~~--~~~~vitVPa~~~~~~r~~l~~A~~-~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~ 404 (714)
....+|+++... .++.. -..+++|.|...+..+|+.+.+.+. ..|++.+.++.+|.+|+++++
T Consensus 76 ~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------- 141 (373)
T smart00268 76 DMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG----------- 141 (373)
T ss_pred HHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----------
Confidence 344455555442 33332 3568999999999999999988874 679999999999999999875
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHH
Q psy5547 405 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERA 484 (714)
Q Consensus 405 ~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 484 (714)
..+.+|||+|+++|+++.+. ++.. +.......++||.++|+.|.+++...- ..... ..-...++..
T Consensus 142 -~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~-------~~~~~~~~~i 207 (373)
T smart00268 142 -RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKELLSERG---YQFNS-------SAEFEIVREI 207 (373)
T ss_pred -CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHHHHHhcC---CCCCc-------HHHHHHHHHh
Confidence 34679999999999999886 3322 222223368999999999998876510 00000 0112234444
Q ss_pred hHhcCCC-----------------CeeEEEEecccCCceeEEEecHHHH---HHHHHHH-----HhhhhhHHHHHHHHcC
Q psy5547 485 KRTLSSS-----------------TQASIEIDSLFEGVDFYTSVTRARF---EELNADL-----FRGTMEPVEKSLRDAK 539 (714)
Q Consensus 485 K~~ls~~-----------------~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~ 539 (714)
|+.+..- ......+. +.+|..+ .+..+.| |.++.|. ...+.+.|.+++..+.
T Consensus 208 Ke~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-lpdg~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~ 284 (373)
T smart00268 208 KEKLCYVAEDFEKEMKKARESSESSKLEKTYE-LPDGNTI--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCD 284 (373)
T ss_pred hhheeeecCChHHHHHHhhhcccccccceeEE-CCCCCEE--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCC
Confidence 4443210 00001111 1233332 2332222 1223331 2467788888888765
Q ss_pred CC--ccccceEEEEcCCCCcHHHHHHHHHHc----C-C--CcccCCCCCchhhHhhHHHHHH
Q psy5547 540 MD--KAQIHDIVLVGGSTRIPKVQKLLQDFF----N-G--KELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 540 ~~--~~~i~~ViLvGG~s~~p~l~~~l~~~f----~-~--~~v~~~~~p~~ava~GAa~~a~ 592 (714)
.+ ..-.+.|+|+||+|++|++.++|.+.+ + . ..+..+.++..++=.||+++|.
T Consensus 285 ~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 285 IDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 33 222367999999999999999999887 2 1 2344455666777778877764
No 56
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.27 E-value=1.1e-10 Score=122.85 Aligned_cols=209 Identities=17% Similarity=0.202 Sum_probs=133.0
Q ss_pred CCCeEEEeeCCCCCHHHHHHHHHHHHHc---------CCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCc
Q psy5547 347 TVSNAVITVPAYFNDSQRQATKDSGTIA---------GLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGG 417 (714)
Q Consensus 347 ~~~~~vitVPa~~~~~~r~~l~~A~~~A---------Gl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~Ggg 417 (714)
.+..+|+..|..+-..+++.+++..... -+..+.+++||.+|.+.+..+... .......++|+|+|++
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~---~~~~~~~~lVIDIG~~ 177 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGK---LLTGKEQSLIIDPGYF 177 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCC---cccCcCcEEEEecCCC
Confidence 4567999999999888999999987542 335578899999998887654321 1114567899999999
Q ss_pred eEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCeeEEE
Q psy5547 418 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE 497 (714)
Q Consensus 418 T~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~ 497 (714)
|||+.++. +..+ +....+....|..++-+.+.+.+.+++. ...... ..++....+.-|.....
T Consensus 178 TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~---~~~i~~~l~~g~~~~~~------- 240 (320)
T TIGR03739 178 TFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRD---IDRIDLALRTGKQPRIY------- 240 (320)
T ss_pred eeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccC---HHHHHHHHHhCCceeec-------
Confidence 99998773 3333 4445556788988888888887766543 221011 11222222211110000
Q ss_pred EecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCC
Q psy5547 498 IDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 577 (714)
Q Consensus 498 i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~ 577 (714)
+. .+.|+ +..+.....++.++..+.+.+. ...+++.|+|+||++. .+++.|++.||...+....
T Consensus 241 ------gk--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~ 304 (320)
T TIGR03739 241 ------QK--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVD 304 (320)
T ss_pred ------ce--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecC
Confidence 10 11122 2222333344444444433331 2245889999999997 7789999999877666778
Q ss_pred CCchhhHhhHHHHH
Q psy5547 578 NPDEAVAYGAAVQA 591 (714)
Q Consensus 578 ~p~~ava~GAa~~a 591 (714)
||..|.|+|-..++
T Consensus 305 dp~~ANarG~~~~g 318 (320)
T TIGR03739 305 EPMFANVRGFQIAG 318 (320)
T ss_pred CcHHHHHHHHHHhh
Confidence 99999999988765
No 57
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.09 E-value=2.1e-09 Score=117.48 Aligned_cols=205 Identities=19% Similarity=0.143 Sum_probs=129.9
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHH-cCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEe
Q psy5547 349 SNAVITVPAYFNDSQRQATKDSGTI-AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 427 (714)
Q Consensus 349 ~~~vitVPa~~~~~~r~~l~~A~~~-AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 427 (714)
..+++|.|..++..+|+.|.+.+-. .+++.+.+..+|.++++++....... ......+-+|||+|.|+|+++.+.-
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~--~~~g~~tglVVDiG~~~T~i~PV~~- 179 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK--ELGGTLTGTVIDSGDGVTHVIPVVD- 179 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccc--ccCCceeEEEEECCCCceEEEEEEC-
Confidence 4589999999999999999887655 49999999999999998863322110 0001235599999999999987742
Q ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCC---------------
Q psy5547 428 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST--------------- 492 (714)
Q Consensus 428 ~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~--------------- 492 (714)
|..-..+ ....++||.++++.|.+.+.++. ...... ..+..++..|+.+..-.
T Consensus 180 -G~~l~~~-~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 247 (414)
T PTZ00280 180 -GYVIGSS-IKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPK 247 (414)
T ss_pred -CEEcccc-eEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcc
Confidence 3221111 12358999999999999875431 111110 11223555555543210
Q ss_pred --eeEEEEecccCCceeEEEecHHHHH---HHHHHHH------hhhhhHHHHHHHHcCCC--ccccceEEEEcCCCCcHH
Q psy5547 493 --QASIEIDSLFEGVDFYTSVTRARFE---ELNADLF------RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPK 559 (714)
Q Consensus 493 --~~~i~i~~~~~~~~~~~~itr~~~~---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~ 559 (714)
...+..+....+....+.+..+.|. -+|.|.+ ..+.+.|.+.|.++..+ ..-.+.|+|+||+|.+|+
T Consensus 248 ~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~G 327 (414)
T PTZ00280 248 NHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKG 327 (414)
T ss_pred cccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcC
Confidence 0112222122233345667766654 2344422 25677888888877544 223477999999999999
Q ss_pred HHHHHHHHc
Q psy5547 560 VQKLLQDFF 568 (714)
Q Consensus 560 l~~~l~~~f 568 (714)
+.++|++.+
T Consensus 328 f~eRL~~El 336 (414)
T PTZ00280 328 FDKRLQRDV 336 (414)
T ss_pred HHHHHHHHH
Confidence 999999887
No 58
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.08 E-value=1.6e-09 Score=118.35 Aligned_cols=239 Identities=21% Similarity=0.263 Sum_probs=140.0
Q ss_pred HHHHHHHHHHH-hCC--CCCeEEEeeCCCCCHHHHHHHHHHHH-HcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcE
Q psy5547 333 LTKMKETAEAY-LGK--TVSNAVITVPAYFNDSQRQATKDSGT-IAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408 (714)
Q Consensus 333 L~~l~~~~~~~-~~~--~~~~~vitVPa~~~~~~r~~l~~A~~-~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~ 408 (714)
++.+++++-.. ++. ....++++.|..++...|+.+.+.+- ..|++.+.++.+|.+|+++++.. +
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~------------t 143 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT------------T 143 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS------------S
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc------------c
Confidence 44455544332 322 34569999999999999998888654 67999999999999999988654 3
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHH-H--HhhccCcc----ccHHHHHHHHHHH
Q psy5547 409 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF-K--RKYKKDLT----TNKRALRRLRTAC 481 (714)
Q Consensus 409 vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~-~--~~~~~~~~----~~~~~~~~l~~~~ 481 (714)
-+|||+|.+.|.++.+. ++.. +.......++||.++++.|.+.+..+- . ..+..... ........-...+
T Consensus 144 glVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (393)
T PF00022_consen 144 GLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIV 220 (393)
T ss_dssp EEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHH
T ss_pred ccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccc
Confidence 49999999999997773 3432 111122357999999999988887741 0 00000000 0000000111122
Q ss_pred HHHhHhc---------------CCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHh----------------hhhhH
Q psy5547 482 ERAKRTL---------------SSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFR----------------GTMEP 530 (714)
Q Consensus 482 e~~K~~l---------------s~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~----------------~i~~~ 530 (714)
+..|+.+ .......+.+ .++. .+.+..+.| .+.+.+|+ .+.+.
T Consensus 221 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~ 294 (393)
T PF00022_consen 221 EEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPEL 294 (393)
T ss_dssp HHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHH
T ss_pred hhccchhhhcccccccccccccccccceeccc---cccc--ccccccccc-cccccccccccccccccccccccchhhhh
Confidence 2233222 1112222322 2333 345554444 22333332 46677
Q ss_pred HHHHHHHcCCCc--cccceEEEEcCCCCcHHHHHHHHHHcCC-------CcccCCC-CCchhhHhhHHHHHH
Q psy5547 531 VEKSLRDAKMDK--AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSI-NPDEAVAYGAAVQAA 592 (714)
Q Consensus 531 i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~l~~~l~~~f~~-------~~v~~~~-~p~~ava~GAa~~a~ 592 (714)
|.+++..+..+. .-.+.|+|+||+|++|++.++|...+.. .++..+. +|..++=.||+++|.
T Consensus 295 I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 295 ILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp HHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeec
Confidence 888887776442 2247899999999999999999988722 3455555 888899999998886
No 59
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.01 E-value=7.1e-09 Score=111.11 Aligned_cols=170 Identities=13% Similarity=0.170 Sum_probs=113.8
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhc-ccccCCCCCCCCc-EEEEEEeCCceEEEEEEEEeC
Q psy5547 351 AVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL-DKKVGSAAGSGER-NVLIFDLGGGTFDVSILTIED 428 (714)
Q Consensus 351 ~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~-~~~~~~~~~~~~~-~vlVvD~GggT~Dvsv~~~~~ 428 (714)
.++++| ....+.+.++++.||++...+..+|.|.+-.+.. ..... .. .... .++++|+|+++|+++++.-
T Consensus 136 ~v~a~~----~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~-~~-~~~~~~~~lvdiG~~~t~l~i~~~-- 207 (348)
T TIGR01175 136 LLAATR----KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLA-SR-TYRLTDAALVDIGATSSTLNLLHP-- 207 (348)
T ss_pred EEEEec----HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCc-cc-cccCceEEEEEECCCcEEEEEEEC--
Confidence 355665 4678888999999999999999999998776631 10000 00 1233 4899999999999999964
Q ss_pred CEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeE
Q psy5547 429 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY 508 (714)
Q Consensus 429 ~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~ 508 (714)
+.+. ......+||.+|++.+.+.+.-. ...||+.|........
T Consensus 208 g~~~---~~r~i~~G~~~i~~~i~~~~~~~-------------------~~~Ae~~k~~~~~~~~--------------- 250 (348)
T TIGR01175 208 GRML---FTREVPFGTRQLTSELSRAYGLN-------------------PEEAGEAKQQGGLPLL--------------- 250 (348)
T ss_pred CeEE---EEEEeechHHHHHHHHHHHcCCC-------------------HHHHHHHHhcCCCCCc---------------
Confidence 3221 13346899999999887543111 2357777764321110
Q ss_pred EEecHHHHHHHHHHHHhhhhhHHHHHHHHc--CCCccccceEEEEcCCCCcHHHHHHHHHHcCCCc
Q psy5547 509 TSVTRARFEELNADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 572 (714)
Q Consensus 509 ~~itr~~~~~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~ 572 (714)
.-.+++++.++++...|.+.++-. ......++.|+|+||+++++.|.+.+++.| +.+
T Consensus 251 ------~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~ 309 (348)
T TIGR01175 251 ------YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLP 309 (348)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCC
Confidence 012345666677777777777533 223345899999999999999999999999 443
No 60
>PTZ00281 actin; Provisional
Probab=98.93 E-value=6.7e-09 Score=111.94 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=137.7
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEE
Q psy5547 348 VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 348 ~~~~vitVPa~~~~~~r~~l~~A-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 426 (714)
-..+++|-|..++..+|+.|.+. .+..+++.+.+...|.+++++++. .+-+|||+|.+.|.++-+.-
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~PV~d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVMDSGDGVSHTVPIYE 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------------ceEEEEECCCceEEEEEEEe
Confidence 35689999999999999999885 566799999999999999987643 35599999999999876543
Q ss_pred eCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCC--------------
Q psy5547 427 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST-------------- 492 (714)
Q Consensus 427 ~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~-------------- 492 (714)
+. .+.......++||.++++.|.+.+..+- ..... .. -+..++..|+.+..-.
T Consensus 169 --G~-~~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (376)
T PTZ00281 169 --GY-ALPHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-TA----EREIVRDIKEKLAYVALDFEAEMQTAASSS 235 (376)
T ss_pred --cc-cchhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-HH----HHHHHHHHHHhcEEecCCchHHHHhhhcCc
Confidence 21 1222222367999999999988775431 11110 00 0123445555543110
Q ss_pred eeEEEEecccCCceeEEEecHHHH---HHHHHHHH-----hhhhhHHHHHHHHcCCC--ccccceEEEEcCCCCcHHHHH
Q psy5547 493 QASIEIDSLFEGVDFYTSVTRARF---EELNADLF-----RGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQK 562 (714)
Q Consensus 493 ~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l~~ 562 (714)
.....+. +.+|.. +.+..+.| |-+|+|.+ ..+.+.|.+.+..+..+ +.-.+.|+|+||+|.+|++.+
T Consensus 236 ~~~~~y~-LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 312 (376)
T PTZ00281 236 ALEKSYE-LPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIAD 312 (376)
T ss_pred ccceeEE-CCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHH
Confidence 0011111 223332 44544433 23444432 24667777777776543 222478999999999999999
Q ss_pred HHHHHc----CC---CcccCCCCCchhhHhhHHHHHH
Q psy5547 563 LLQDFF----NG---KELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 563 ~l~~~f----~~---~~v~~~~~p~~ava~GAa~~a~ 592 (714)
+|+..+ +. .++..+.++..++=+|++++|.
T Consensus 313 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 313 RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 999887 21 2344555677788888888875
No 61
>PTZ00004 actin-2; Provisional
Probab=98.93 E-value=1.5e-08 Score=109.45 Aligned_cols=217 Identities=17% Similarity=0.177 Sum_probs=137.6
Q ss_pred CCeEEEeeCCCCCHHHHHHHHHHH-HHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEE
Q psy5547 348 VSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 348 ~~~~vitVPa~~~~~~r~~l~~A~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 426 (714)
...+++|-|..++..+|+.+.+.+ +..|++.+.+..+|.+++++++. .+-+|||+|.+.|+++.+.
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~pV~- 167 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY- 167 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------------ceEEEEECCCCcEEEEEEE-
Confidence 356889999999999998887765 55799999999999999987643 3459999999999997764
Q ss_pred eCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCC---------------
Q psy5547 427 EDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS--------------- 491 (714)
Q Consensus 427 ~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~--------------- 491 (714)
++..-. ......++||.++++.|.+.+..+. ...... . -...++..|+.+..-
T Consensus 168 -dG~~l~-~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 168 -EGYSLP-HAIHRLDVAGRDLTEYMMKILHERG-----TTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred -CCEEee-cceeeecccHHHHHHHHHHHHHhcC-----CCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 332222 2223367999999999998875431 111110 0 111234444443210
Q ss_pred CeeEEEEecccCCceeEEEecHHHHH---HHHHHH------HhhhhhHHHHHHHHcCCC--ccccceEEEEcCCCCcHHH
Q psy5547 492 TQASIEIDSLFEGVDFYTSVTRARFE---ELNADL------FRGTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKV 560 (714)
Q Consensus 492 ~~~~i~i~~~~~~~~~~~~itr~~~~---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l 560 (714)
......+. +.+|.. +.+..+.|. -+|.|. ...+.+.|.+++.++..+ +.-...|+|+||+|.+|++
T Consensus 236 ~~~~~~y~-lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 236 DKYEESYE-LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cccceEEE-CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCH
Confidence 00011111 223332 344554432 344543 235667788888776543 2234789999999999999
Q ss_pred HHHHHHHcCC-------CcccCCCCCchhhHhhHHHHHH
Q psy5547 561 QKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 561 ~~~l~~~f~~-------~~v~~~~~p~~ava~GAa~~a~ 592 (714)
.++|+..+.. .++..+.++..++=.||+++|.
T Consensus 313 ~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 313 PERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9999988721 2344455677777778887764
No 62
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.92 E-value=1.5e-08 Score=106.50 Aligned_cols=227 Identities=16% Similarity=0.256 Sum_probs=121.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCCC--CeEEEeeC-CCC-CHHHH---HHHHH-HHHH------cC-----CCeeEeeec
Q psy5547 324 TIEEVSSMVLTKMKETAEAYLGKTV--SNAVITVP-AYF-NDSQR---QATKD-SGTI------AG-----LNVLRIINE 384 (714)
Q Consensus 324 s~eev~a~~L~~l~~~~~~~~~~~~--~~~vitVP-a~~-~~~~r---~~l~~-A~~~------AG-----l~~~~li~E 384 (714)
.++.=.+.+-..+..||....|... ..+|++.| ..| +...+ ..+.+ -... -| +..+.+++|
T Consensus 69 ~~~y~~s~~n~~av~haL~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ 148 (318)
T PF06406_consen 69 HVDYQYSDLNLVAVHHALLKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQ 148 (318)
T ss_dssp HGGGGGSHHHHHHHHHHHHHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEES
T ss_pred ccccccchhhHHHHHHHHHHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcc
Confidence 3444455555666677776666543 45799999 334 32211 22211 1111 11 245788999
Q ss_pred hhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhc
Q psy5547 385 PTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 464 (714)
Q Consensus 385 p~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~ 464 (714)
|.||.+.+..+.. +...++|+|+||+|+|++++.- +.-.+....+...+|-..+-+.+.+.+... .
T Consensus 149 ~~~A~~~~~~~~~-------~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~-~---- 214 (318)
T PF06406_consen 149 SVGAVFDALMDLD-------EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA-G---- 214 (318)
T ss_dssp SHHHHHHHHHTS--------TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---S----
T ss_pred cHHHHHHHHHhhc-------ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-c----
Confidence 9999998866522 3467899999999999998852 222233344556789888888887776541 0
Q ss_pred cCccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccc
Q psy5547 465 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQ 544 (714)
Q Consensus 465 ~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 544 (714)
.. .+......+..... -+.-+.. ..... -..+++.++++..++++.+.|.+.+. ...+
T Consensus 215 ~~--~s~~~~~~ii~~~~-~~~~~~~----------~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~----~~~~ 272 (318)
T PF06406_consen 215 ID--TSELQIDDIIRNRK-DKGYLRQ----------VINDE-----DVIDDVSEVIEEAVEELINRILRELG----DFSD 272 (318)
T ss_dssp BH--HHHHHHHHHHHTTT--HHHHHH----------HSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHT----TS-S
T ss_pred CC--CcHHHHHHHHHhhh-ccceecc----------cccch-----hhHHHHHHHHHHHHHHHHHHHHHHHh----hhcc
Confidence 00 00011111111000 0000000 00000 01234445555555555555555443 2346
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHcC--CCcccCCCCCchhhHhhHH
Q psy5547 545 IHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAA 588 (714)
Q Consensus 545 i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~~p~~ava~GAa 588 (714)
++.|+|+||++. .+.+.|++.|+ ...+..+.||+.|.|+|-+
T Consensus 273 ~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 273 IDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred CCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 789999999985 78999999984 3567888899999999965
No 63
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.90 E-value=1e-08 Score=109.13 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=116.4
Q ss_pred EEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCE
Q psy5547 351 AVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGI 430 (714)
Q Consensus 351 ~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~ 430 (714)
.++++| ...-+...++++.||++...+--+|.|.+-.+...... .........++++|+|+.++.+.+++- +.
T Consensus 129 ll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~-~~~~~~~~~~~lvdiG~~~t~~~i~~~--g~ 201 (340)
T PF11104_consen 129 LLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQ-LPDEEDAETVALVDIGASSTTVIIFQN--GK 201 (340)
T ss_dssp EEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHT-ST----T-EEEEEEE-SS-EEEEEEET--TE
T ss_pred EEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHh-CCcccccceEEEEEecCCeEEEEEEEC--CE
Confidence 466666 35677788899999999988777777766555332111 111113468999999999999999863 33
Q ss_pred EEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeEEE
Q psy5547 431 FEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTS 510 (714)
Q Consensus 431 ~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~ 510 (714)
... .....+||.++++.|.+.+.-.+ ..+|..|..-+-..
T Consensus 202 ~~f---~R~i~~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~------------------ 241 (340)
T PF11104_consen 202 PIF---SRSIPIGGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE------------------ 241 (340)
T ss_dssp EEE---EEEES-SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT----------------------
T ss_pred EEE---EEEEeeCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc------------------
Confidence 221 22368999999999987753332 24555555421100
Q ss_pred ecHHHHHHHHHHHHhhhhhHHHHHHHH--cCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCccc---------CCC--
Q psy5547 511 VTRARFEELNADLFRGTMEPVEKSLRD--AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN---------KSI-- 577 (714)
Q Consensus 511 itr~~~~~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~---------~~~-- 577 (714)
+...+.+.+.++.+...|++.++- .......|+.|+|+||++++++|.+.|++.| +.++. .+.
T Consensus 242 ---~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~ 317 (340)
T PF11104_consen 242 ---EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKI 317 (340)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCccc
Confidence 233456667777777777777762 2334567999999999999999999999999 54321 111
Q ss_pred --------CCchhhHhhHHHHH
Q psy5547 578 --------NPDEAVAYGAAVQA 591 (714)
Q Consensus 578 --------~p~~ava~GAa~~a 591 (714)
.|..++|.|.|+..
T Consensus 318 ~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 318 NSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhhHHHHHHHHhhcC
Confidence 25678888888764
No 64
>PTZ00466 actin-like protein; Provisional
Probab=98.88 E-value=3.1e-08 Score=106.59 Aligned_cols=232 Identities=15% Similarity=0.146 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhCC--CCCeEEEeeCCCCCHHHHHHHHHHH-HHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEE
Q psy5547 333 LTKMKETAEAYLGK--TVSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNV 409 (714)
Q Consensus 333 L~~l~~~~~~~~~~--~~~~~vitVPa~~~~~~r~~l~~A~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~v 409 (714)
++.+++++-..++. .-..+++|-|..++..+|+.|.+.+ +..+++.+.+..+|.+|+++++. .+-
T Consensus 89 ~e~iw~~~f~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------------~tg 156 (380)
T PTZ00466 89 MENIWIHVYNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------------TNG 156 (380)
T ss_pred HHHHHHHHHhhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------------ceE
Confidence 44444444333433 2456899999999999999987764 55788999999999999987643 355
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcC
Q psy5547 410 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 489 (714)
Q Consensus 410 lVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls 489 (714)
+|||+|.+.|.++-+- ++.. +.......++||.++++.|.+.+.++ .+..... .-+..++..|+.+.
T Consensus 157 lVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~-------~~~~~v~~iKe~~c 223 (380)
T PTZ00466 157 TVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS-------AEMEVVKNMKENCC 223 (380)
T ss_pred EEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHHHHHHhc---CCCCCcH-------HHHHHHHHHHHhCe
Confidence 9999999999997664 3322 22222236899999999998877432 1111110 11123344454432
Q ss_pred CC-------------CeeEEEEecccCCceeEEEecHHHH---HHHHHHHH-----hhhhhHHHHHHHHcCCC--ccccc
Q psy5547 490 SS-------------TQASIEIDSLFEGVDFYTSVTRARF---EELNADLF-----RGTMEPVEKSLRDAKMD--KAQIH 546 (714)
Q Consensus 490 ~~-------------~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~ 546 (714)
.- ......+. +.+|.. +.+..+.| |-+|.|.+ ..+.+.|.+.+.++..+ +.-..
T Consensus 224 ~v~~d~~~e~~~~~~~~~~~~y~-LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~ 300 (380)
T PTZ00466 224 YVSFNMNKEKNSSEKALTTLPYI-LPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYS 300 (380)
T ss_pred EecCChHHHHhhccccccceeEE-CCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhh
Confidence 10 00111121 223332 44555554 23344422 24567777777776544 22347
Q ss_pred eEEEEcCCCCcHHHHHHHHHHcCC-------CcccCCCCCchhhHhhHHHHHH
Q psy5547 547 DIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 547 ~ViLvGG~s~~p~l~~~l~~~f~~-------~~v~~~~~p~~ava~GAa~~a~ 592 (714)
+|+|+||+|.+|++.++|+..+.. .++..+.++..++=.|++++|.
T Consensus 301 nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 301 HIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred cEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 899999999999999999988721 1344455666677778888775
No 65
>PTZ00452 actin; Provisional
Probab=98.87 E-value=5.2e-08 Score=104.80 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=141.8
Q ss_pred HHHHHHHHH-HHhCCC--CCeEEEeeCCCCCHHHHHHHHHHH-HHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcE
Q psy5547 333 LTKMKETAE-AYLGKT--VSNAVITVPAYFNDSQRQATKDSG-TIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408 (714)
Q Consensus 333 L~~l~~~~~-~~~~~~--~~~~vitVPa~~~~~~r~~l~~A~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~ 408 (714)
++.+++++- ..+... -..+++|-|..++..+|+.|.+.+ +..+++.+.+...|.+++++++. .+
T Consensus 82 ~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------------~t 149 (375)
T PTZ00452 82 IEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------------TI 149 (375)
T ss_pred HHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------------ce
Confidence 445555552 233332 356899999999999999998865 45688999999999999987643 24
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhc
Q psy5547 409 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 488 (714)
Q Consensus 409 vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l 488 (714)
-+|||+|.+.++++-+. +|..-..+ ....++||.++++.|.+.+..+ +....... . +..++..|+.+
T Consensus 150 glVVDiG~~~t~v~PV~--dG~~l~~~-~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~ 216 (375)
T PTZ00452 150 GLVVDSGEGVTHCVPVF--EGHQIPQA-ITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERL 216 (375)
T ss_pred eeeecCCCCcceEEEEE--CCEEeccc-eEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHh
Confidence 59999999999997764 33222222 2235799999999888876432 11111100 0 11233344443
Q ss_pred CCC--------------CeeEEEEecccCCceeEEEecHHHHH---HHHHHHH-----hhhhhHHHHHHHHcCCC--ccc
Q psy5547 489 SSS--------------TQASIEIDSLFEGVDFYTSVTRARFE---ELNADLF-----RGTMEPVEKSLRDAKMD--KAQ 544 (714)
Q Consensus 489 s~~--------------~~~~i~i~~~~~~~~~~~~itr~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~ 544 (714)
..- ........ +.+|. .+.+..+.|. -+|+|.+ ..+.+.|.+.+..+..+ ..-
T Consensus 217 c~v~~d~~~e~~~~~~~~~~~~~y~-LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L 293 (375)
T PTZ00452 217 CYTALDPQDEKRIYKESNSQDSPYK-LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQEL 293 (375)
T ss_pred ccccCcHHHHHHHhhccCCcCceEE-CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHh
Confidence 211 00011111 22333 2445555542 3334432 24667777787776543 233
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHc----C-CC--cccCCCCCchhhHhhHHHHHH
Q psy5547 545 IHDIVLVGGSTRIPKVQKLLQDFF----N-GK--ELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 545 i~~ViLvGG~s~~p~l~~~l~~~f----~-~~--~v~~~~~p~~ava~GAa~~a~ 592 (714)
.++|+|+||+|.+|++.++|+..+ + .. ++..+.++..++=.|++++|.
T Consensus 294 ~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 294 CRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred hccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 478999999999999999999887 2 11 234445565666678887774
No 66
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.59 E-value=1.5e-05 Score=91.67 Aligned_cols=269 Identities=15% Similarity=0.236 Sum_probs=157.7
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCC--------------CCeEEEeeCCCCCHHHHHHHHHHHHHc--------CCC-
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKT--------------VSNAVITVPAYFNDSQRQATKDSGTIA--------GLN- 377 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~--------------~~~~vitVPa~~~~~~r~~l~~A~~~A--------Gl~- 377 (714)
+.+|-..+..++|..|.-+|..+++.+ ...+++|||+..+..+|+.++++++.| |..
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 688888999999999999987765532 456999999999999999999988877 431
Q ss_pred -------------------eeE-eeechhHHHHHhhcc------------------cccCC----CCCCCCcEEEEEEeC
Q psy5547 378 -------------------VLR-IINEPTAAAIAYGLD------------------KKVGS----AAGSGERNVLIFDLG 415 (714)
Q Consensus 378 -------------------~~~-li~Ep~AAa~~~~~~------------------~~~~~----~~~~~~~~vlVvD~G 415 (714)
.+. =-+|.+|.=+-|++. +.... ....+.-.|.-+|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 011 124554443333221 11000 012234567889999
Q ss_pred CceEEEEEEEEe--C--C-EEEEEE---ecCCCCccHHHHHHHHH-HHHHHHHHHh----------------hccCcccc
Q psy5547 416 GGTFDVSILTIE--D--G-IFEVKS---TAGDTHLGGEDFDNRMV-NHFVQEFKRK----------------YKKDLTTN 470 (714)
Q Consensus 416 ggT~Dvsv~~~~--~--~-~~~v~~---~~g~~~lGG~~id~~l~-~~l~~~~~~~----------------~~~~~~~~ 470 (714)
|||||+.|-++. + + ...+.. ..-+-.+.|++|-..++ .+++..+.+. ++.+....
T Consensus 575 GGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~ 654 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSD 654 (1002)
T ss_pred CCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhH
Confidence 999999987764 2 2 111111 11225678888865544 4444333322 22221110
Q ss_pred H-H-------------HHHHHHHHHHHHhHhcCCCCeeEEEEeccc---------------------------CCceeEE
Q psy5547 471 K-R-------------ALRRLRTACERAKRTLSSSTQASIEIDSLF---------------------------EGVDFYT 509 (714)
Q Consensus 471 ~-~-------------~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~---------------------------~~~~~~~ 509 (714)
. + ...+++.++|..-..- ........+..+. +=.+..+
T Consensus 655 ~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~-~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l 733 (1002)
T PF07520_consen 655 QDRVLRQQFTLQVFIPIGLAILKAYENYDPLD-PSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPL 733 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceE
Confidence 0 0 0123333444422100 0000111110000 0024557
Q ss_pred EecHHHHHHHHH---HHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCC---C------------
Q psy5547 510 SVTRARFEELNA---DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG---K------------ 571 (714)
Q Consensus 510 ~itr~~~~~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~---~------------ 571 (714)
.|+...+...+- ..+...+..+.+++..- +.|.++|+|--|++|.|+..+...++- .
T Consensus 734 ~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~W 808 (1002)
T PF07520_consen 734 EIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNW 808 (1002)
T ss_pred EEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeeccc
Confidence 788888888774 55555566666665543 358899999999999999999999721 0
Q ss_pred ----cccCCCCCchhhHhhHHHHHHHHh
Q psy5547 572 ----ELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 572 ----~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
.-....||...+|.||.+++....
T Consensus 809 YPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 809 YPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 112345999999999998876554
No 67
>KOG0679|consensus
Probab=98.59 E-value=1.8e-06 Score=87.80 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=82.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCC--CCeEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEeeechhHHHHHhhcccccCCCCC
Q psy5547 327 EVSSMVLTKMKETAEAYLGKT--VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAG 403 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~~~--~~~~vitVPa~~~~~~r~~l~~A-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~ 403 (714)
|+..+.++|.++. ++... -..++||-|++-+...|+.+.++ .+...++...++.+|+++|++.+.
T Consensus 86 D~~~~~w~~~~~~---~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr--------- 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKN---QLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR--------- 153 (426)
T ss_pred HHHHHHHHHHHhh---hhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC---------
Confidence 3445555555532 33322 24589999998888888887775 456788889999999999998743
Q ss_pred CCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy5547 404 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 458 (714)
Q Consensus 404 ~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~ 458 (714)
.+.+|+|+|++++.++-+. +|..-..+... ..+||+.++..+.+.+..+
T Consensus 154 ---stalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 ---STALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ---CceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 4569999999999998774 44333333333 6899999999998888754
No 68
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.55 E-value=2.7e-06 Score=86.31 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=103.2
Q ss_pred eeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHH
Q psy5547 381 IINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 460 (714)
Q Consensus 381 li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~ 460 (714)
.++|-+|-+.+...-.+ ..=.|+|+||..+-+..+. ++...-.........|+..|.+.+++.+--.+.
T Consensus 74 ~~~ei~~~~~g~~~~~~---------~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~~ 142 (248)
T TIGR00241 74 IVTEISCHGKGANYLAP---------EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSVE 142 (248)
T ss_pred ceEEhhHHHHHHHHHCC---------CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCHH
Confidence 57787776654432211 1125999999988888776 444433334555677888888888766532111
Q ss_pred HhhccCccccHHHHHHHHHHHHHHhHh----cCCCCeeEEEEec-ccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHH
Q psy5547 461 RKYKKDLTTNKRALRRLRTACERAKRT----LSSSTQASIEIDS-LFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSL 535 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~e~~K~~----ls~~~~~~i~i~~-~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l 535 (714)
+++..+.. ..-+..+.+..+. .... +....+ .++++..+.+.+...+.+.+
T Consensus 143 -------------------e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~~~ 198 (248)
T TIGR00241 143 -------------------ELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVK---KEDILAGVYESIAERVAEML 198 (248)
T ss_pred -------------------HHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 12222222 1111122222211 0000 000112 34566666666766666666
Q ss_pred HHcCCCccccc-eEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHH
Q psy5547 536 RDAKMDKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 536 ~~~~~~~~~i~-~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 589 (714)
.... ++ .|+|+||.+++|++.+.+.+.+ +.++..+.+|..+.|+|||+
T Consensus 199 ~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 199 QRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred hhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 5433 44 7999999999999999999999 88899999999999999997
No 69
>PRK11678 putative chaperone; Provisional
Probab=98.54 E-value=9.4e-08 Score=104.53 Aligned_cols=62 Identities=27% Similarity=0.317 Sum_probs=55.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
++|+++|++++++ +|.|+||||+||||.||+.|++.||+.++ ...||+++||.|+|++|+.+
T Consensus 387 ~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 387 ELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPI-VGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcE-EeCCCcchHHHHHHHHHHhh
Confidence 5789999999987 47999999999999999999999976554 57799999999999999754
No 70
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.54 E-value=7.1e-08 Score=102.66 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=57.8
Q ss_pred chHHHHHHHcC--CCccCCC-eEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAK--MDKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 2 ~~i~~~l~~a~--l~~~dId-~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
++|+++|++++ +..+.++ .|+|+||+|+||.|++.|++.|+ .++....||++|||+|||++++.+
T Consensus 257 ~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~-~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 257 QAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK-VPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC-CCceecCCHHHHHHHHHHHHHhch
Confidence 56888999986 6678888 79999999999999999999994 677788899999999999998775
No 71
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.27 E-value=2.1e-05 Score=79.02 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCCeeEeeechhHHHHHhhcc-cccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCC
Q psy5547 363 QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLD-KKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 441 (714)
Q Consensus 363 ~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~-~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~ 441 (714)
.......|++.||++...+--|..|.--+|..- .... .......++|+|+|+..+.+.+++-+...+ .....
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~--~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~ 222 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG--PEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVP 222 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhC--CchhhhhheeeeecccceEEEEEECCeeee-----Eeecc
Confidence 344557789999999888888888877776421 1111 101123368999999999999997644333 33478
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHH
Q psy5547 442 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNA 521 (714)
Q Consensus 442 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~ 521 (714)
+||+.+++.+.+.+--.+ ..++.+|....--. +--.+...
T Consensus 223 ~g~~Qlt~~i~r~~~L~~-------------------~~a~~~k~~~~~P~---------------------~y~~~vl~ 262 (354)
T COG4972 223 VGTDQLTQEIQRAYSLTE-------------------EKAEEIKRGGTLPT---------------------DYGSEVLR 262 (354)
T ss_pred CcHHHHHHHHHHHhCCCh-------------------hHhHHHHhCCCCCC---------------------chhHHHHH
Confidence 999999998876542111 14455555432211 12235566
Q ss_pred HHHhhhhhHHHHHHHHc--CCCccccceEEEEcCCCCcHHHHHHHHHHc
Q psy5547 522 DLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 522 ~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f 568 (714)
++++.+.+.|.+.|+-. .....+|++|+|.||++.+..|.+.|.+.+
T Consensus 263 ~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 263 PFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 77777777777777632 334567999999999999999999999998
No 72
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.21 E-value=2.1e-05 Score=85.45 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=73.1
Q ss_pred CeEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEe
Q psy5547 349 SNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE 427 (714)
Q Consensus 349 ~~~vitVPa~~~~~~r~~l~~A-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 427 (714)
..+++|-|..++...|..+.+. .+...++.+.+..++.+++++.+.. ..+.+|+|+|.+.++|+-+--
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~----------~~~g~ViD~G~~~t~v~PV~D- 175 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS----------DETGLVIDSGDSVTHVIPVVD- 175 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC----------CCceEEEEcCCCceeeEeeec-
Confidence 4689999999999999888875 4556778888888888888776532 246799999999999987642
Q ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy5547 428 DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 458 (714)
Q Consensus 428 ~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~ 458 (714)
+. .+........+||.+++..|...+...
T Consensus 176 -G~-~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 176 -GI-VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred -cc-cccccceeeecCcHHHHHHHHHHHhhc
Confidence 21 222222336899999999988887763
No 73
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.16 E-value=1.6e-06 Score=92.27 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=54.3
Q ss_pred chHHHHHHHcCCC--ccCCC-eEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMD--KAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 2 ~~i~~~l~~a~l~--~~dId-~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
++|.++|++++.. .+.++ .|+|+||+|++|.+++.|++.| +.++....||+++||+|||+++..+
T Consensus 258 ~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 258 EAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 4678888888644 33344 5999999999999999999999 4677788899999999999998764
No 74
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.15 E-value=0.00016 Score=73.34 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=51.9
Q ss_pred HHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCccc-CCCCCchhhHhhHHHHHHHH
Q psy5547 519 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN-KSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 519 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~-~~~~p~~ava~GAa~~a~~l 594 (714)
++..+...+...+...+.+.++. +.|+|+||.++.+.+++.+++.+ +.++. .+.+|+.+-|.|||++|...
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHHH
Confidence 34444444444444444433322 46999999999999999999999 66666 57789999999999999643
No 75
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.06 E-value=4.1e-06 Score=89.11 Aligned_cols=64 Identities=28% Similarity=0.339 Sum_probs=53.1
Q ss_pred chHHHHHHHcCCCc-cCC-C-eEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDK-AQI-H-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66 (714)
Q Consensus 2 ~~i~~~l~~a~l~~-~dI-d-~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~ 66 (714)
+.|.++|++++... .++ + .|+|+||+|+||.+++.|++.| +.++....||+++||.|||+++..
T Consensus 261 ~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 261 EAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 35677888877543 355 3 6999999999999999999999 467778899999999999999754
No 76
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.01 E-value=0.00032 Score=72.14 Aligned_cols=154 Identities=23% Similarity=0.332 Sum_probs=94.8
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcC
Q psy5547 410 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLS 489 (714)
Q Consensus 410 lVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls 489 (714)
.|+|+||- |.-++++.++...-..-.+-+.-|.-.|-+.+++.| +.+ +..+-..+++++....
T Consensus 232 tIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L--------gv~-------v~E~~~~A~~~~~~v~ 294 (396)
T COG1924 232 TVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRL--------GVD-------VEELGKLALKATPPVK 294 (396)
T ss_pred EEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHHHHh--------CCC-------HHHHHHHHhcCCCCcc
Confidence 89999996 666666667765544434333444444444444333 222 2333444555554333
Q ss_pred CCCeeEEEEec-----ccCCceeEEEecHHHHHHHHHHHHhhhhhHHHH-HHHHcCCCccccceEEEEcCCCCcHHHHHH
Q psy5547 490 SSTQASIEIDS-----LFEGVDFYTSVTRARFEELNADLFRGTMEPVEK-SLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563 (714)
Q Consensus 490 ~~~~~~i~i~~-----~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~ 563 (714)
-+..+.+..++ +..|. ..|+++..+...+.+.+-. +++...+. +-|+|+||.+....+.++
T Consensus 295 i~S~CaVF~eSevi~~~~~G~---------~~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~a 361 (396)
T COG1924 295 INSRCAVFAESEVISALAEGA---------SPEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRA 361 (396)
T ss_pred cCCeeEEEehHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHH
Confidence 33334333322 01111 2455566665555554444 55544333 229999999999999999
Q ss_pred HHHHcCCCcccCCCCCchhhHhhHHHHHHHH
Q psy5547 564 LQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 564 l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 594 (714)
+++.+ +.++..|.+|...-|.|||++|...
T Consensus 362 le~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 362 LEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred HHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 99999 8999999999999999999998644
No 77
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.00 E-value=0.00039 Score=69.58 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCc----ccCCCCCchhhHhhHHHHH
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKE----LNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~----v~~~~~p~~ava~GAa~~a 591 (714)
+++..+...+...+...+++.+.. -+.|+|+||.++.+++.+.+++.+.+.. +..+.+|+.+-|+|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344445555555444445443211 1359999999999999999999884332 5567789999999999875
No 78
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=97.96 E-value=6.5e-06 Score=87.44 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=53.3
Q ss_pred chHHHHHHHcCC--CccCCC-eEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHH
Q psy5547 2 EPVEKSLRDAKM--DKAQIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 2 ~~i~~~l~~a~l--~~~dId-~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~a 64 (714)
+.|.++|++++. ..+.++ .|+|+||+|++|.+++.|++.| +.++....||+++||+||+..-
T Consensus 260 ~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 260 EAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 467888888864 447788 6999999999999999999999 4677777899999999999874
No 79
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.95 E-value=0.00017 Score=70.78 Aligned_cols=190 Identities=18% Similarity=0.197 Sum_probs=99.7
Q ss_pred HHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHH
Q psy5547 371 GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 450 (714)
Q Consensus 371 ~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~ 450 (714)
-+..|.++..-=.|+++|.+....... .+..+.|+|+|||+||.+++.-++. .....-.| .|+.++..
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG-------t~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTml 172 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG-------TDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTML 172 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT---------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHH
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC-------CCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHHH
Confidence 344577776667899999998876554 3567899999999999999976443 33332233 37777776
Q ss_pred HHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCC-----------CCeeEEEEec-----------ccCCc--e
Q psy5547 451 MVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-----------STQASIEIDS-----------LFEGV--D 506 (714)
Q Consensus 451 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~-----------~~~~~i~i~~-----------~~~~~--~ 506 (714)
|...+- .+ . +..+|..|+---. .....+.-+. +.++. .
T Consensus 173 I~sELG--------l~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvP 234 (332)
T PF08841_consen 173 INSELG--------LE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVP 234 (332)
T ss_dssp HHHHCT---------S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEE
T ss_pred HHHhhC--------CC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceee
Confidence 654321 10 0 1134555543210 0001000000 00110 1
Q ss_pred eEEEecHHHHHHHHHHHHhhh-hhHHHHHHHHcCC--CccccceEEEEcCCCCcHHHHHHHHHHcCCC-------cccCC
Q psy5547 507 FYTSVTRARFEELNADLFRGT-MEPVEKSLRDAKM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKS 576 (714)
Q Consensus 507 ~~~~itr~~~~~~~~~~~~~i-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~-------~v~~~ 576 (714)
+...++-+.+..+=...=+++ ..-+.++|+.... +-.+|+.|+||||++.=-=|-+++.+.+..- .++-.
T Consensus 235 i~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~ 314 (332)
T PF08841_consen 235 IPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGV 314 (332)
T ss_dssp ESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGT
T ss_pred cCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccc
Confidence 111122233322221111111 1222333433222 2457899999999999888888998888432 45667
Q ss_pred CCCchhhHhhHHHH
Q psy5547 577 INPDEAVAYGAAVQ 590 (714)
Q Consensus 577 ~~p~~ava~GAa~~ 590 (714)
.-|..|||.|.++.
T Consensus 315 eGPRNAVATGLvls 328 (332)
T PF08841_consen 315 EGPRNAVATGLVLS 328 (332)
T ss_dssp STTSTHHHHHHHHH
T ss_pred cCchHHHHHHHHHh
Confidence 78999999999864
No 80
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.93 E-value=0.0003 Score=74.24 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHH
Q psy5547 546 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 546 ~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~ 592 (714)
+.|+++||.++++.+.+.+++.+ +.++..+.+|+.+-|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 45999999999999999999999 78888999999999999999984
No 81
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.92 E-value=7.8e-06 Score=87.14 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=52.9
Q ss_pred chHHHHHHHcCCC--ccCCCe-EEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMD--KAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 2 ~~i~~~l~~a~l~--~~dId~-V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
+.|.++|++++.. .+.++. |+|+||+|++|.++++|++.|+ .++....||+++||+|||+.+...
T Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~-~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 262 EAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG-LPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC-CCceecCCHHHHHHHHHHHHHhCh
Confidence 4567778877533 344565 9999999999999999999995 567777899999999999998654
No 82
>KOG0797|consensus
Probab=97.89 E-value=6.3e-05 Score=79.24 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=93.0
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHhCCCCC-----eEEEeeCCCCCHHHHHHHHH-HHHHcCCCeeEeeechhHHHHHhh
Q psy5547 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVS-----NAVITVPAYFNDSQRQATKD-SGTIAGLNVLRIINEPTAAAIAYG 393 (714)
Q Consensus 320 ~~~~s~eev~a~~L~~l~~~~~~~~~~~~~-----~~vitVPa~~~~~~r~~l~~-A~~~AGl~~~~li~Ep~AAa~~~~ 393 (714)
++++|..++++++-+-+.-...+.+..++. .+|+-||-.|...+.+.+.. .....||..+.++.|..||.+..+
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 688999999999777666666666665543 58999999999888666555 466789999999999999998876
Q ss_pred cccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q psy5547 394 LDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 456 (714)
Q Consensus 394 ~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~ 456 (714)
+. ...|||+|+-+|.|+.++- |. ....+.-....||.||++.|+-.+.
T Consensus 274 ls------------s~CVVdiGAQkTsIaCVEd--Gv-s~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 274 LS------------SACVVDIGAQKTSIACVED--GV-SLPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred cc------------ceeEEEccCcceeEEEeec--Cc-cccCceEEeccCCchHHHHHHHHHH
Confidence 64 2389999999999998863 21 2222222367899999998886655
No 83
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.89 E-value=1.3e-05 Score=82.15 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=44.1
Q ss_pred cCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHH
Q psy5547 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 16 ~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~a 64 (714)
.+++.|+|+||+||+|.+++.+++.| +.++....||+.++|+|||+||
T Consensus 220 ~~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 220 QDVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 47899999999999999999999999 5677788999999999999985
No 84
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.83 E-value=0.00035 Score=72.88 Aligned_cols=179 Identities=15% Similarity=0.174 Sum_probs=97.3
Q ss_pred EeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEe-CCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q psy5547 380 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE-DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQE 458 (714)
Q Consensus 380 ~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~-~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~ 458 (714)
.+++|-+|-|.....-. ++.-.|+|+||-.+- +++++ ++.+.-......+.-|.-.|-+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~---------P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L--- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY---------PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM--- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC---------CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHHc---
Confidence 35689888777653321 123389999997555 45554 3433322222223344444444444333
Q ss_pred HHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHc
Q psy5547 459 FKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDA 538 (714)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~ 538 (714)
+.+ +..+-..+.+++....-+..+.+.-++-.-. -..-..+++ +++..+...+...+...+.+.
T Consensus 315 -----gi~-------leEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~re---DIaAGL~~SIA~Rv~s~l~r~ 378 (432)
T TIGR02259 315 -----NMG-------LHELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRE---DILAGLHRAIILRAISIISRS 378 (432)
T ss_pred -----CCC-------HHHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 121 1222333344443333333344433220000 000112232 334444444444444444433
Q ss_pred CCCccccceEEEEcCCCCcHHHHHHHHHHcC----CCcccCCCCCchhhHhhHHHHH
Q psy5547 539 KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN----GKELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 539 ~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~----~~~v~~~~~p~~ava~GAa~~a 591 (714)
. ..-+.|+|+||.++.+.+.+.|++.+. +.++..+.+|+.+-|.|||++|
T Consensus 379 ~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 379 G---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred c---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 1 112579999999999999999999994 4678889999999999999875
No 85
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.79 E-value=1.8e-05 Score=84.38 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=69.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhCCC-----CCeEEEeeCCCCCHHHHHHHHHHHHH------------cCCCeeEeeechh
Q psy5547 324 TIEEVSSMVLTKMKETAEAYLGKT-----VSNAVITVPAYFNDSQRQATKDSGTI------------AGLNVLRIINEPT 386 (714)
Q Consensus 324 s~eev~a~~L~~l~~~~~~~~~~~-----~~~~vitVPa~~~~~~r~~l~~A~~~------------AGl~~~~li~Ep~ 386 (714)
+...+=+.-++.+.+.--+..|.. ..-.+||.++.. ++.++++++. ||++...++. |.
T Consensus 59 ~~~~ID~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ 133 (475)
T PRK10719 59 KQGEIDEAAIKELIEEEYQKAGIAPESIDSGAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GK 133 (475)
T ss_pred CCccccHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HH
Confidence 334455555555555444444443 334688887754 4445555555 6666655655 99
Q ss_pred HHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHH
Q psy5547 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 449 (714)
Q Consensus 387 AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~ 449 (714)
|++.+...+ . ++..++++|+|||||++++++-+. + . ..+..++||+.++.
T Consensus 134 ASg~avLse-E-------ke~gVa~IDIGgGTT~iaVf~~G~--l--~-~T~~l~vGG~~IT~ 183 (475)
T PRK10719 134 GAGAQTLSE-E-------RNTRVLNIDIGGGTANYALFDAGK--V--I-DTACLNVGGRLIET 183 (475)
T ss_pred HhhHHHhhh-h-------ccCceEEEEeCCCceEEEEEECCE--E--E-EEEEEecccceEEE
Confidence 988877633 2 578899999999999999997522 1 1 22336788888753
No 86
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.72 E-value=1.9e-05 Score=79.39 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=44.0
Q ss_pred CCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHH
Q psy5547 13 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62 (714)
Q Consensus 13 l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~ 62 (714)
+...+++.|+|+||++|+|.+++.|++.| +.++....||++++|.|||+
T Consensus 190 l~~~~~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 190 IEGQGVKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHhCCCCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 44467899999999999999999999999 56777889999999999986
No 87
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.71 E-value=0.012 Score=64.41 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=53.3
Q ss_pred EEEecHHHHHHHHHHH---HhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCC--------------
Q psy5547 508 YTSVTRARFEELNADL---FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------------- 570 (714)
Q Consensus 508 ~~~itr~~~~~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~-------------- 570 (714)
.+.|.-+++++.+-.- +......+.+++. .-+.|.++|+|--+|+|.++..+....|-
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn-----~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAIN-----HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHh-----hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 3456666665544322 2222333333332 33457899999999999999999987621
Q ss_pred -----CcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 571 -----KELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 571 -----~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
.+..+..||....+.||-+++..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 1122345899999999999887764
No 88
>KOG0676|consensus
Probab=97.62 E-value=0.00029 Score=73.86 Aligned_cols=208 Identities=20% Similarity=0.266 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHH-cCCCeeEeeechhHHHHHhhcccccCCCCCCCCcE
Q psy5547 330 SMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTI-AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408 (714)
Q Consensus 330 a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~-AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~ 408 (714)
..+++|+...-....... ..+++|-|..|+...|+.|.+..-. -+.+.+.+ .. .|.. |.... .+
T Consensus 82 e~iw~~if~~~L~~~Pee-~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv-a~-qavl--ya~g~----------tt 146 (372)
T KOG0676|consen 82 EKIWHHLFYSELLVAPEE-HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV-AI-QAVL--YASGR----------TT 146 (372)
T ss_pred HHHHHHHHHHhhccCccc-CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH-HH-HHHH--HHcCC----------ee
Confidence 556666652222222222 5799999999999999999886543 34444333 22 3323 33222 23
Q ss_pred EEEEEeCCceEEE-EEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHh
Q psy5547 409 VLIFDLGGGTFDV-SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT 487 (714)
Q Consensus 409 vlVvD~GggT~Dv-sv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ 487 (714)
=+|+|+|.|-+++ -++. | +.+...-....+||.++++-+...|.+. .+......... -++.+|+.
T Consensus 147 G~VvD~G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~~---g~s~~~~~~~e-------Iv~diKek 212 (372)
T KOG0676|consen 147 GLVVDSGDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRKR---GYSFTTSAEFE-------IVRDIKEK 212 (372)
T ss_pred EEEEEcCCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHhc---ccccccccHHH-------HHHHhHhh
Confidence 4999999997755 4442 2 2222233447899999998776666551 11111111111 12233333
Q ss_pred cCCC------------CeeEEEEec-ccCCceeEEEecHHHHH---HHHHHHH-----hhhhhHHHHHHHHcCCC--ccc
Q psy5547 488 LSSS------------TQASIEIDS-LFEGVDFYTSVTRARFE---ELNADLF-----RGTMEPVEKSLRDAKMD--KAQ 544 (714)
Q Consensus 488 ls~~------------~~~~i~i~~-~~~~~~~~~~itr~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~ 544 (714)
++.. ....+...+ +.+|.. +.+.-+.|. -+|+|.+ ..+.+.+-+.+.++.++ +.-
T Consensus 213 lCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L 290 (372)
T KOG0676|consen 213 LCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDL 290 (372)
T ss_pred hcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHH
Confidence 3210 011111111 222222 344333322 2222222 33445555555555433 333
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHc
Q psy5547 545 IHDIVLVGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 545 i~~ViLvGG~s~~p~l~~~l~~~f 568 (714)
..+|+|+||++..|++.+++.+.+
T Consensus 291 ~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 291 YENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred HhheEEeCCcccchhHHHHHHHHH
Confidence 478999999999999999999876
No 89
>PRK13317 pantothenate kinase; Provisional
Probab=97.26 E-value=0.005 Score=63.04 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=43.2
Q ss_pred ccceEEEEc-CCCCcHHHHHHHHHHcC--CCcccCCCCCchhhHhhHHHHHH
Q psy5547 544 QIHDIVLVG-GSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 544 ~i~~ViLvG-G~s~~p~l~~~l~~~f~--~~~v~~~~~p~~ava~GAa~~a~ 592 (714)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|.|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 79999999999999873 57788899999999999999875
No 90
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.25 E-value=0.00035 Score=76.62 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=53.1
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCC------------CCCCchhhHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK------------SINPDEAVAYGAAVQAAI 66 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~------------~~n~deaVA~GAA~~aa~ 66 (714)
+++...|.++++....++.|+|+||+++||.|++.+++.|+. ++.. ..+|..|+|.|.++|+..
T Consensus 313 ~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~-~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 313 LQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT-QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC-CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 345667888999999999999999999999999999999953 2211 248999999999999863
No 91
>KOG0677|consensus
Probab=96.96 E-value=0.02 Score=55.61 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=138.4
Q ss_pred HHHHHHHHH-HHhCCC--CCeEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcE
Q psy5547 333 LTKMKETAE-AYLGKT--VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408 (714)
Q Consensus 333 L~~l~~~~~-~~~~~~--~~~~vitVPa~~~~~~r~~l~~A-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~ 408 (714)
+.++++++- ..+..+ ..++.+|-|..-....|+.|.+. .+..||.-+.+.-...-+.++-++. +
T Consensus 83 M~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~------------t 150 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL------------T 150 (389)
T ss_pred HHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc------------c
Confidence 678888773 222222 33689999999999999999886 5678998877654444433333322 1
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhc
Q psy5547 409 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTL 488 (714)
Q Consensus 409 vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l 488 (714)
=+|+|-|.|-|-++-+-- + +..-.-.+-..+.|+++++-|.+.++.+= |......+- +.....|+.|
T Consensus 151 GvVvDSGDGVTHi~PVye-~--~~l~HLtrRldvAGRdiTryLi~LLl~rG---YafN~tADF-------ETVR~iKEKL 217 (389)
T KOG0677|consen 151 GVVVDSGDGVTHIVPVYE-G--FVLPHLTRRLDVAGRDITRYLIKLLLRRG---YAFNHTADF-------ETVREIKEKL 217 (389)
T ss_pred eEEEecCCCeeEEeeeec-c--eehhhhhhhccccchhHHHHHHHHHHhhc---cccccccch-------HHHHHHHhhh
Confidence 289999999888765421 1 11111123356889999999988887541 111111111 1233344444
Q ss_pred CCC-----------CeeEEEEe--cccCCceeEEEecHHHHH---HHHHHHH-----hhhhhHHHHHHHHcCCCcc--cc
Q psy5547 489 SSS-----------TQASIEID--SLFEGVDFYTSVTRARFE---ELNADLF-----RGTMEPVEKSLRDAKMDKA--QI 545 (714)
Q Consensus 489 s~~-----------~~~~i~i~--~~~~~~~~~~~itr~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i 545 (714)
..- -+.++-++ .+.+|.- +.+-.+.|+ .+|+|-+ ..+.+++-.+++.+.++.. --
T Consensus 218 CYisYd~e~e~kLalETTvLv~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lY 295 (389)
T KOG0677|consen 218 CYISYDLELEQKLALETTVLVESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELY 295 (389)
T ss_pred eeEeechhhhhHhhhhheeeeeeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHH
Confidence 321 01222222 1233332 333333443 4555544 2345677777777766522 23
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHcCC------------------CcccCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 546 HDIVLVGGSTRIPKVQKLLQDFFNG------------------KELNKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 546 ~~ViLvGG~s~~p~l~~~l~~~f~~------------------~~v~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
.+|+|.||++--|++-.+|++.+.+ .++-.++.-...|-.|.|.+|..+...
T Consensus 296 khIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~ 365 (389)
T KOG0677|consen 296 KHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDK 365 (389)
T ss_pred hHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCC
Confidence 7899999999999998888766511 122233344467888999888877643
No 92
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=96.93 E-value=0.00056 Score=73.90 Aligned_cols=60 Identities=25% Similarity=0.484 Sum_probs=46.4
Q ss_pred chHH-HHHHHcCCCccCCCe-EEEecCCcCcHHHHHHHHHHcCCCcCC-----C-------CCCCchhhHHHHHHH
Q psy5547 2 EPVE-KSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELN-----K-------SINPDEAVAYGAAVQ 63 (714)
Q Consensus 2 ~~i~-~~l~~a~l~~~dId~-V~LvGGssriP~vq~~l~~~f~~~~i~-----~-------~~n~deaVA~GAA~~ 63 (714)
+.|+ +.|++++++ ++|+. |+|+||+|+||.|++.+++.|+. ++. . --+|.-++|.|.++|
T Consensus 298 ~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~-~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 298 EIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDN-PVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCC-CeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 4566 899999988 88998 99999999999999999999963 221 1 115667777776654
No 93
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.79 E-value=0.0022 Score=62.58 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCCC-ccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHH
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 593 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 593 (714)
..+++..+++.+.-.++..++...-. ...++.|+++||.++++.+.+++.+.| +.+|..+.+ .++.+.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 44556666666666666655554222 344799999999999999999999999 788876654 88999999999874
No 94
>KOG0680|consensus
Probab=96.40 E-value=0.084 Score=53.28 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCeEEEeeCCCCCHH-HHHHHHHHHHHcCCCeeEeeechhHHHHHhh-cccccCCCCCCCCcEEEEEEeCCceEEEEEEE
Q psy5547 348 VSNAVITVPAYFNDS-QRQATKDSGTIAGLNVLRIINEPTAAAIAYG-LDKKVGSAAGSGERNVLIFDLGGGTFDVSILT 425 (714)
Q Consensus 348 ~~~~vitVPa~~~~~-~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~-~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~ 425 (714)
..++|+|=|.+--+. +.....-..+..+++.+. .-+.|+..++. .-..........+.+++|+|-|-+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~--kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVL--KTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEe--ecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 356888888764444 444444455667776543 33333333332 11111111123567999999999987765432
Q ss_pred EeCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q psy5547 426 IEDGIFEVKSTAGDTHLGGEDFDNRMVNHFV 456 (714)
Q Consensus 426 ~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~ 456 (714)
. +.....+... ..+||..++..|.+.+.
T Consensus 171 ~--g~~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 K--GIPYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred c--CcchhhceEE-eecchHHHHHHHHHHhh
Confidence 2 2211222222 67899999998887765
No 95
>PRK15027 xylulokinase; Provisional
Probab=96.02 E-value=0.017 Score=64.86 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
.++..+++.+.-.++..++........++.|+++||+++++...+++.+.| +.+|....+.+++.++|||+.|+.-.|.
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 334444555544444444333212234789999999999999999999999 8888666677778899999999877664
No 96
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.01 E-value=0.019 Score=65.35 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHH
Q psy5547 512 TRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 512 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a 591 (714)
+|..+..++..+++.+.-.++..++...-....++.|.++||+++++...+.+.+.+ +.+|..+.++ ++.++|||+.|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHHHH
Confidence 566777888888888877777666655322345789999999999999999999999 8888777555 47799999999
Q ss_pred HHHhCC
Q psy5547 592 AILHGD 597 (714)
Q Consensus 592 ~~l~~~ 597 (714)
+.-.|.
T Consensus 489 ~~~~G~ 494 (541)
T TIGR01315 489 AKAAGT 494 (541)
T ss_pred HHhcCc
Confidence 876653
No 97
>PLN02669 xylulokinase
Probab=95.91 E-value=0.023 Score=64.63 Aligned_cols=72 Identities=21% Similarity=0.346 Sum_probs=55.9
Q ss_pred HHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHH
Q psy5547 519 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 593 (714)
Q Consensus 519 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 593 (714)
++..+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45566666666666666555432 45789999999999999999999999 7788766555 6789999999975
No 98
>KOG2517|consensus
Probab=95.76 E-value=0.12 Score=56.62 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCCCc-cccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHH
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKMDK-AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 594 (714)
.+.+....++.|....+..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.+++. ++.|||+.|+..
T Consensus 385 ~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a 462 (516)
T KOG2517|consen 385 KEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAA 462 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhh
Confidence 445555667777666666666655554 57888999999999999999999999 799999988887 999999999988
Q ss_pred hCC
Q psy5547 595 HGD 597 (714)
Q Consensus 595 ~~~ 597 (714)
++.
T Consensus 463 ~~~ 465 (516)
T KOG2517|consen 463 SGK 465 (516)
T ss_pred cCC
Confidence 876
No 99
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.64 E-value=0.02 Score=55.75 Aligned_cols=47 Identities=34% Similarity=0.534 Sum_probs=41.2
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHH
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~ 66 (714)
++.|.++||.+|-|.+.+++.+.| +.++.. .+.+|+.|+|||+.|+.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~-~~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVL-GRPVVR-PEVEEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHH-TSEEEE-ESSSTHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHh-CCceEe-CCCCchHHHHHHHHHHh
Confidence 899999999999999999999999 466644 44599999999999874
No 100
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.52 E-value=0.8 Score=47.03 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHc----CCCcccCCCCCchhhHhhHHHHH
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF----NGKELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f----~~~~v~~~~~p~~ava~GAa~~a 591 (714)
+++....+.+.+.+...+........ .|+|+||..+.+.+++.+.+.+ +..++..+..|....+.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44555555566666666665543322 2999999999977777774444 44456677889999999999986
No 101
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.34 E-value=0.23 Score=50.60 Aligned_cols=47 Identities=21% Similarity=0.100 Sum_probs=40.4
Q ss_pred cccceEEEEcC-CCCcHHHHHHHHHHc--CCCcccCCCCCchhhHhhHHH
Q psy5547 543 AQIHDIVLVGG-STRIPKVQKLLQDFF--NGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 543 ~~i~~ViLvGG-~s~~p~l~~~l~~~f--~~~~v~~~~~p~~ava~GAa~ 589 (714)
..+..|+++|| ....|.+++.+...+ ...++..+.|+....|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 778999999999886 346778889999999999986
No 102
>PRK04123 ribulokinase; Provisional
Probab=95.34 E-value=0.041 Score=62.80 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=56.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCC-CCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhC
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 596 (714)
.++..+++.+.-.+...++........++.|.++||+ ++++.+.+.+.+.| +.+|.... +.++.+.|||+.|+.-.|
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEecC-ccccchHHHHHHHHHHhc
Confidence 3455555555544444444332223357889999999 99999999999999 78875554 456889999999987665
Q ss_pred C
Q psy5547 597 D 597 (714)
Q Consensus 597 ~ 597 (714)
.
T Consensus 490 ~ 490 (548)
T PRK04123 490 A 490 (548)
T ss_pred c
Confidence 3
No 103
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.28 E-value=0.047 Score=61.50 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHcC-CCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 517 EELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 517 ~~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
..++..+++.+.-.++..++... .....++.|.++||+++++.+.+.+.+.| +.+|..... .++.++|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERPVV-AETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEecCc-ccchHHHHHHHHhhhc
Confidence 34555666666655555554443 11234788999999999999999999999 788866544 4688999999998776
Q ss_pred CC
Q psy5547 596 GD 597 (714)
Q Consensus 596 ~~ 597 (714)
|.
T Consensus 453 G~ 454 (498)
T PRK00047 453 GF 454 (498)
T ss_pred Cc
Confidence 63
No 104
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.24 E-value=0.049 Score=61.45 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=56.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhC
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 596 (714)
.++..+++.+.-.++..++...- ....++.|.++||.++++.+.+.+.+.| +.+|.... ..++.++|||+.|+.-.|
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34555566665555555543321 1224788999999999999999999999 88887665 445789999999987766
Q ss_pred C
Q psy5547 597 D 597 (714)
Q Consensus 597 ~ 597 (714)
.
T Consensus 457 ~ 457 (504)
T PTZ00294 457 V 457 (504)
T ss_pred c
Confidence 4
No 105
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.24 E-value=0.049 Score=61.92 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=55.9
Q ss_pred HHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCC-CCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 519 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 519 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
++..+++.+.-.++..++........++.|+++||+ ++++.+.+.+.+.| +.+|....++ ++.+.|||+.|+.-.|.
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 444555555444444444332223357899999999 99999999999999 7888776554 57799999999877664
No 106
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.19 E-value=0.054 Score=60.84 Aligned_cols=80 Identities=28% Similarity=0.430 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHH
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l 594 (714)
...++..+++.+.-.++..++.... ....++.|.++||.++++.+.+++.+.| +.++.... ..++.++|||+.|+.-
T Consensus 361 ~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~ 438 (481)
T TIGR01312 361 RADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWA 438 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHh
Confidence 3344555555555555555444321 1234789999999999999999999999 78886664 5568899999999877
Q ss_pred hCC
Q psy5547 595 HGD 597 (714)
Q Consensus 595 ~~~ 597 (714)
.|.
T Consensus 439 ~g~ 441 (481)
T TIGR01312 439 LGE 441 (481)
T ss_pred cCC
Confidence 764
No 107
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.12 E-value=0.051 Score=61.13 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 517 EELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 517 ~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
..++..+++.+.-.++..++.... ....++.|.++||+++++...+++.+.| +.++....+ .++.++|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~-~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKV-TETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEecCC-CcchHHHHHHHHHhhc
Confidence 344455555555555555544321 1234789999999999999999999999 888866544 4677999999998776
Q ss_pred CC
Q psy5547 596 GD 597 (714)
Q Consensus 596 ~~ 597 (714)
|.
T Consensus 449 G~ 450 (493)
T TIGR01311 449 GY 450 (493)
T ss_pred Cc
Confidence 64
No 108
>PRK10331 L-fuculokinase; Provisional
Probab=95.02 E-value=0.06 Score=60.16 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhC
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 596 (714)
.+...+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.| +.+|..... .++.++|||+.|+.-.|
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 34555666665555555544321 1235789999999999999999999999 888866654 45789999999987766
Q ss_pred C
Q psy5547 597 D 597 (714)
Q Consensus 597 ~ 597 (714)
.
T Consensus 440 ~ 440 (470)
T PRK10331 440 E 440 (470)
T ss_pred C
Confidence 4
No 109
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.01 E-value=0.059 Score=60.15 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHcCCC-ccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 517 EELNADLFRGTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 517 ~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
..++..+++.+.-.++..++..... ...++.|.++||+++++.+.+.+.+.| +.+|..+.++ ++.++|||+.|+.-.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGV 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhc
Confidence 3455555555554444444433211 224688999999999999999999999 7888766555 577999999998776
Q ss_pred CC
Q psy5547 596 GD 597 (714)
Q Consensus 596 ~~ 597 (714)
|.
T Consensus 443 G~ 444 (465)
T TIGR02628 443 GE 444 (465)
T ss_pred Cc
Confidence 63
No 110
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.89 E-value=0.068 Score=60.33 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 517 EELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 517 ~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
..++..+++.+.-.+...+..... ....++.|.++||.++++...+.+.+.| +.+|....++ ++.+.|||+.|+.-.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKAL 450 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhc
Confidence 344555555555444443332210 1235789999999999999999999999 8888766555 578999999998776
Q ss_pred CC
Q psy5547 596 GD 597 (714)
Q Consensus 596 ~~ 597 (714)
|.
T Consensus 451 G~ 452 (505)
T TIGR01314 451 GL 452 (505)
T ss_pred Cc
Confidence 53
No 111
>PLN02295 glycerol kinase
Probab=94.81 E-value=0.072 Score=60.22 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCC------CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHH
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKM------DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 589 (714)
-..++..+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.| +.+|..+. ..++.++|||+
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~ 455 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAY 455 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHH
Confidence 3345556666665555555553321 1235788999999999999999999999 88886554 45688999999
Q ss_pred HHHHHhCC
Q psy5547 590 QAAILHGD 597 (714)
Q Consensus 590 ~a~~l~~~ 597 (714)
.|+.-.|.
T Consensus 456 ~A~~~~G~ 463 (512)
T PLN02295 456 AAGLAVGL 463 (512)
T ss_pred HHHhhcCc
Confidence 99877664
No 112
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.67 E-value=0.09 Score=46.62 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=27.2
Q ss_pred EEEEEeCCceEEEEEEEEe-CCEEEEEEecCCCC--ccHHHHH--HHHHHHHHH
Q psy5547 409 VLIFDLGGGTFDVSILTIE-DGIFEVKSTAGDTH--LGGEDFD--NRMVNHFVQ 457 (714)
Q Consensus 409 vlVvD~GggT~Dvsv~~~~-~~~~~v~~~~g~~~--lGG~~id--~~l~~~l~~ 457 (714)
++++|+|++++.+.+++.. .+.+.++..+.... +=|..|. +.+.+-+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 5899999999999999873 33344443221111 1177776 666555443
No 113
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.66 E-value=0.08 Score=60.00 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHcC-CCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhC
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAK-MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~ 596 (714)
.++..+++.+.-.++..++... .....++.|.++||+++++...+.+.+.| +++|....++ ++.++|||+.|+.-.|
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 3455555555544444444322 11234789999999999999999999999 8888776555 5779999999987766
Q ss_pred C
Q psy5547 597 D 597 (714)
Q Consensus 597 ~ 597 (714)
.
T Consensus 460 ~ 460 (520)
T PRK10939 460 I 460 (520)
T ss_pred C
Confidence 4
No 114
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.62 E-value=0.079 Score=58.97 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHH
Q psy5547 512 TRARFEELNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 590 (714)
Q Consensus 512 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~ 590 (714)
++.++ +..+++.+.-.++..++.... ....++.|.++||++++++..+.+.+.+ +.+|... +.++.++|||+.
T Consensus 357 ~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~ 430 (454)
T TIGR02627 357 SDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGV 430 (454)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHH
Confidence 45444 444444444444333333221 1234789999999999999999999999 7888543 356889999999
Q ss_pred HHHHhCC
Q psy5547 591 AAILHGD 597 (714)
Q Consensus 591 a~~l~~~ 597 (714)
|+.-.|.
T Consensus 431 a~~~~G~ 437 (454)
T TIGR02627 431 QLMALDE 437 (454)
T ss_pred HHHhcCC
Confidence 9877664
No 115
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.61 E-value=0.12 Score=53.62 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=11.7
Q ss_pred HHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHH
Q psy5547 519 LNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 519 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 589 (714)
+++-..+.+.+.|++.....+.++.+ -.++.+||.+ |.+...|.+.++-..+..+..|.-+.|.||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 33444445555555554444555443 2355566665 78888888888434566666678889999985
No 116
>PRK15027 xylulokinase; Provisional
Probab=94.60 E-value=0.063 Score=60.28 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=48.4
Q ss_pred HHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 6 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 6 ~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
+.|++.|. .++.|.++||.+|.+...+++.+.| +.++....+.+++.|+|||+.|+.-.
T Consensus 378 ~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~ 436 (484)
T PRK15027 378 DVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_pred HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhc
Confidence 45555554 3789999999999999999999999 57775555677889999999998653
No 117
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.03 E-value=0.12 Score=57.61 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHhhhhhHHHHHHHHcCC-CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 519 LNADLFRGTMEPVEKSLRDAKM-DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 519 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
++..+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.+ +.+|.... .++.+.|||+.|+.-.|.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 3444445554444444433321 1224688999999999999999999999 78885543 378899999999877764
No 118
>PLN02669 xylulokinase
Probab=93.99 E-value=0.11 Score=59.25 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=42.0
Q ss_pred cCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHH
Q psy5547 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66 (714)
Q Consensus 16 ~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~ 66 (714)
..++.|+++||.||-|.+.+++.+.|| .++ ..++..|+.|+|||+.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVlg-~pV-~~~~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIFG-CDV-YTVQRPDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHcC-CCe-EecCCCCchHHHHHHHHHH
Confidence 358899999999999999999999995 566 4455668999999999976
No 119
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=93.78 E-value=0.78 Score=50.19 Aligned_cols=220 Identities=18% Similarity=0.165 Sum_probs=117.5
Q ss_pred HHHHHHHHHcCCCeeEee----echhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEe---CC----EEEE
Q psy5547 365 QATKDSGTIAGLNVLRII----NEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE---DG----IFEV 433 (714)
Q Consensus 365 ~~l~~A~~~AGl~~~~li----~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~---~~----~~~v 433 (714)
....++|..-||..-..| -+.-|.+++.+... .++ |+.=+|-+|+++.+-.-. .+ ....
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~--------~~~--l~~I~GTStC~m~~s~~~~~v~GvwGpy~~a 301 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ--------PGS--LAMIAGTSTCHMLLSEKPRFVPGVWGPYDGA 301 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC--------CCe--EEEEeccceEEEEecCCceecCccccccccc
Confidence 446778888888542222 23333333332111 222 444477777777665432 11 1111
Q ss_pred EEecCCCCccHHHHHHHHHHHHHHHHHHhh------ccC-ccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccCCc-
Q psy5547 434 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKY------KKD-LTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV- 505 (714)
Q Consensus 434 ~~~~g~~~lGG~~id~~l~~~l~~~~~~~~------~~~-~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~~~- 505 (714)
+..+--..=||..-.-.+++|+.+.+.-.. ..+ .........++...+++++...+.... -..++.+..+.
T Consensus 302 i~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRs 380 (544)
T COG1069 302 VLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRS 380 (544)
T ss_pred cCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCC-cEecccccCCcC
Confidence 111111223566666677777776531000 000 011112344555555666665543221 12222222111
Q ss_pred -----e-------eEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcc
Q psy5547 506 -----D-------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 573 (714)
Q Consensus 506 -----~-------~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v 573 (714)
+ +...=+.+.+..+....+..+.--.+..++...-..-.|+.|+..||-.+.|.+.+.+.+.. +.++
T Consensus 381 P~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvt-g~~v 459 (544)
T COG1069 381 PLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVT-GRPV 459 (544)
T ss_pred CCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhc-CCeE
Confidence 1 11222344455666666666654444444443334556899999999999999999999998 7777
Q ss_pred cCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 574 NKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 574 ~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
..+ ..+++++.|+|+.|+.-.|.
T Consensus 460 ~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 460 VIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred Eee-cccchhhhHHHHHHHHHhcc
Confidence 666 66789999999999876654
No 120
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=93.46 E-value=0.12 Score=52.75 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=40.5
Q ss_pred CeEEEecCCcCcHHHHHHHHHHcCCCcCC-CCCCCchhhHHHHHHHHHHH
Q psy5547 19 HDIVLVGGSTRIPKVQKLLQDFFNGKELN-KSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 19 d~V~LvGGssriP~vq~~l~~~f~~~~i~-~~~n~deaVA~GAA~~aa~l 67 (714)
+.|+|.||.++-|.+++.+++.++ .++. ...+|..+-|+|||++|...
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg-~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILG-IKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhC-CCceeCCCCccHHHHHHHHHHHHHH
Confidence 359999999999999999999995 4554 45678999999999999643
No 121
>KOG2531|consensus
Probab=93.35 E-value=0.25 Score=52.35 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=47.2
Q ss_pred HHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHH
Q psy5547 535 LRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 593 (714)
Q Consensus 535 l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~ 593 (714)
.+..+....+...|+++||.|+..-|-+.|.+.| +.++... +-..+.+.|+|+.|+.
T Consensus 433 ~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 433 AEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred hccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 3445666667799999999999999999999999 7777655 6677889999999764
No 122
>KOG0681|consensus
Probab=93.32 E-value=0.083 Score=56.92 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=42.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHcC-------CCcccCCCCCchhhHhhHHHHHHHH
Q psy5547 545 IHDIVLVGGSTRIPKVQKLLQDFFN-------GKELNKSINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 545 i~~ViLvGG~s~~p~l~~~l~~~f~-------~~~v~~~~~p~~ava~GAa~~a~~l 594 (714)
|.+|+|+||+|.+|++.++|+..+. ...|....||....=+||+.+|+..
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANP 615 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCc
Confidence 7899999999999999999999872 3456777899999999999888753
No 123
>PRK04123 ribulokinase; Provisional
Probab=93.10 E-value=0.16 Score=58.00 Aligned_cols=59 Identities=20% Similarity=0.480 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCccCCCeEEEecCC-cCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 4 VEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 4 i~~~l~~a~l~~~dId~V~LvGGs-sriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
+-++|++.|. .++.|.++||. +|-|...+++.+.| +.++ ......|+.|+|||+.|+.-
T Consensus 428 ~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV-~~~~~~e~~alGaA~lA~~~ 487 (548)
T PRK04123 428 IMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVL-NRPI-QVVASDQCPALGAAIFAAVA 487 (548)
T ss_pred HHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhc-CCce-EecCccccchHHHHHHHHHH
Confidence 3455666554 47899999999 99999999999999 4666 34456789999999999865
No 124
>PLN02295 glycerol kinase
Probab=93.08 E-value=0.16 Score=57.38 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=43.7
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 15 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 15 ~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
...++.|.++||.++-|...+++.+.| +.++ ...+..|+.|+|||+.|+.-.
T Consensus 410 ~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV-~~~~~~e~~alGaA~~A~~~~ 461 (512)
T PLN02295 410 HKGLFLLRVDGGATANNLLMQIQADLL-GSPV-VRPADIETTALGAAYAAGLAV 461 (512)
T ss_pred CCCcceEEEeccchhCHHHHHHHHHhc-CCce-EecCccccHHHHHHHHHHhhc
Confidence 345889999999999999999999999 5666 445667899999999987654
No 125
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.08 E-value=0.27 Score=55.35 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=39.5
Q ss_pred cccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHh
Q psy5547 543 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595 (714)
Q Consensus 543 ~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~ 595 (714)
..++.|.++||++++++..+++.+.+ +.++..+...+.+.+-||++.+....
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAAALG 451 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHHHhC
Confidence 44678999999999999999999999 88887665555555555555555443
No 126
>PRK00047 glpK glycerol kinase; Provisional
Probab=92.91 E-value=0.18 Score=56.87 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=46.2
Q ss_pred HHHHH-cCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 6 KSLRD-AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 6 ~~l~~-a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
+.|++ .|. .++.|.++||.+|-|...+++.+.| +.++ ...+..|+.|+|||+.|+.=.
T Consensus 394 e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV-~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 394 DAMQADSGI---RLKELRVDGGAVANNFLMQFQADIL-GVPV-ERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhh-CCee-EecCcccchHHHHHHHHhhhc
Confidence 44543 354 3789999999999999999999999 4666 445677899999999997653
No 127
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=92.90 E-value=0.11 Score=52.53 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=40.7
Q ss_pred CCC-eEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHH
Q psy5547 17 QIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQ 63 (714)
Q Consensus 17 dId-~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~ 63 (714)
+++ .|+|.||.++.|.+.+.|++.+ +.++...-+|..+.|+|||++
T Consensus 202 ~~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 202 KIEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CCCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 566 8999999999999999999999 567777778888999999973
No 128
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.88 E-value=0.18 Score=56.73 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=42.7
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
.++.|.++||.+|-|...+++.+.| +.++. ..+..|+.|+|||+.|+.-.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~-~~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVV-RPKVTETTALGAAYAAGLAV 448 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeE-ecCCCcchHHHHHHHHHhhc
Confidence 4789999999999999999999999 56774 45667899999999997653
No 129
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=92.77 E-value=0.2 Score=57.03 Aligned_cols=61 Identities=25% Similarity=0.463 Sum_probs=47.8
Q ss_pred HHHHHHHcCCCccCCCeEEEecCC-cCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhC
Q psy5547 4 VEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 69 (714)
Q Consensus 4 i~~~l~~a~l~~~dId~V~LvGGs-sriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~ 69 (714)
+-+.|+++|. .++.|.++||. ++-+...+++.+.| +.++.+.- ..|+.|+|||+.|+.-.+
T Consensus 425 ~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 425 IMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVA-SDQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEecc-CCcchhHHHHHHHHHHcC
Confidence 3455665554 48999999999 99999999999999 56774444 457889999999986543
No 130
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=92.75 E-value=0.065 Score=56.12 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=39.1
Q ss_pred CeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHH
Q psy5547 19 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 19 d~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa 65 (714)
+.++|+||++++|.+.+.|++.+ +-++...-||..|||.||.....
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred CCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 46999999999999999999999 57888899999999999987653
No 131
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=92.53 E-value=0.26 Score=49.69 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=37.7
Q ss_pred eEEEecCCcCcHHHHHHHHHHcCCCc----CCCCCCCchhhHHHHHHHH
Q psy5547 20 DIVLVGGSTRIPKVQKLLQDFFNGKE----LNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 20 ~V~LvGGssriP~vq~~l~~~f~~~~----i~~~~n~deaVA~GAA~~a 64 (714)
.|+|.||.++-|.+.+.|++.+++.+ +..+.+|..+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 49999999999999999999995433 4445578899999999974
No 132
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=92.48 E-value=0.15 Score=54.39 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=43.6
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhC
Q psy5547 15 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 69 (714)
Q Consensus 15 ~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~ 69 (714)
..++|.|+|+||++++ +++.|++.|+. +...-||-.|.|+|...+|..+.+
T Consensus 289 ~~~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 289 INSFDRVIVTGGGANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred cCCCCEEEEECCcHHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 4689999999999998 89999999964 345578999999999999987743
No 133
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=92.46 E-value=0.22 Score=55.53 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=46.0
Q ss_pred HHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 6 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 6 ~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
+.|++.+.. .++.|.++||.+|-|...+++.+.| +.++. ..+..|+.++|||+.|+.=.
T Consensus 384 e~l~~~~~~--~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~-~~~~~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 384 QMLEQIGQF--KASELLLVGGGSKNTLWNQIRANML-DIPVK-VVDDAETTVAGAAMFGFYGV 442 (465)
T ss_pred HHHHHhcCC--CcceEEEecCccCCHHHHHHhhhhc-CCeeE-eccCCcchHHHHHHHHHHhc
Confidence 455554322 3788999999999999999999999 56764 34456889999999998653
No 134
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=92.43 E-value=0.24 Score=52.32 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=40.4
Q ss_pred CeEEEecCCcCcHHHHHHHHHHcC----CCcCCCCCCCchhhHHHHHHHH
Q psy5547 19 HDIVLVGGSTRIPKVQKLLQDFFN----GKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 19 d~V~LvGGssriP~vq~~l~~~f~----~~~i~~~~n~deaVA~GAA~~a 64 (714)
+.|+|.||.++-|.+.+.|++.++ +.++....+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 579999999999999999999995 3456678899999999999975
No 135
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.41 E-value=0.24 Score=55.91 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhC
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 69 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~ 69 (714)
++.|.++||.++-|...+++.+.| +.++ ......|+.|+|||+.|+.-.+
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV-~~~~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL-GKDI-VVPEMAETTALGAALLAGLAVG 456 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh-CCce-EecCcccchHHHHHHHHHhhcC
Confidence 889999999999999999999999 5666 3455777899999999976543
No 136
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=92.33 E-value=0.19 Score=56.47 Aligned_cols=51 Identities=35% Similarity=0.584 Sum_probs=43.4
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhC
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 69 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~ 69 (714)
.++.|.++||.+|.+...+++.+.| +.++. .....|+.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~-~~~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVD-VPEGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCcee-ecCCCcchHHHHHHHHHHhcC
Confidence 4899999999999999999999999 56664 445778999999999987643
No 137
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=92.20 E-value=0.23 Score=56.59 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 4 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 4 i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
+-++|++.|. .++.|.++||.+|-|...+++.+++ +.++.+ .+..|+.|+|||+.|+.-.
T Consensus 433 ~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~~~~e~~alGaA~lA~~~~ 492 (541)
T TIGR01315 433 IVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADAC-DMPVLI-PYVNEAVLHGAAMLGAKAA 492 (541)
T ss_pred HHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHH-CCeeEe-cChhHHHHHHHHHHHHHhc
Confidence 3455666664 4889999999999999999999999 567744 4556789999999997653
No 138
>KOG2531|consensus
Probab=91.88 E-value=0.29 Score=51.94 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=45.4
Q ss_pred cCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHH
Q psy5547 11 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66 (714)
Q Consensus 11 a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~ 66 (714)
-|.....=+.|+.+||.||--.|-+.|.+.|| -++ .++...+++|+|+|+.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~-apV-y~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFG-APV-YTIEGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhC-CCe-EeecCCchhhHHHHHHHHH
Confidence 35555677899999999999999999999995 455 3458999999999999864
No 139
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=91.76 E-value=0.19 Score=53.52 Aligned_cols=48 Identities=31% Similarity=0.425 Sum_probs=42.3
Q ss_pred CCC-eEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHH
Q psy5547 17 QIH-DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 17 dId-~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa 65 (714)
++. .|+++||.++.|.+.+.+++.+ +.++...-+|.-+-|+|||++|.
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 344 4999999999999999999999 46777788999999999999984
No 140
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=91.30 E-value=0.35 Score=54.79 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=45.4
Q ss_pred HHHHH-cCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 6 KSLRD-AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 6 ~~l~~-a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
+.|++ .|. .++.|.++||.+|-|...+++.+.| +.++. .....|+.++|||+.|+.-.
T Consensus 400 ~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~-~~~~~e~~alGaA~lA~~~~ 458 (520)
T PRK10939 400 QQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVT-GLPVK-VPVVKEATALGCAIAAGVGA 458 (520)
T ss_pred HHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhc-CCeeE-EecccCchHHHHHHHHHHHh
Confidence 44444 254 4889999999999999999999999 56664 34455788999999987653
No 141
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.14 E-value=2.4 Score=44.19 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=39.2
Q ss_pred ccccceEEEEcCCCCcHHHHHHHHHHcCCC---cccCCCCC----chhhHhhHHHHHHHHhCC
Q psy5547 542 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINP----DEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 542 ~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~---~v~~~~~p----~~ava~GAa~~a~~l~~~ 597 (714)
..+++.|+|.|-.+++|-+++.+++.|.+. ++. ...+ ....|.|||+.|.-+.|.
T Consensus 258 ~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 258 VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 346788999999999999988888887322 221 1122 234789999999888765
No 142
>PRK10331 L-fuculokinase; Provisional
Probab=91.09 E-value=0.41 Score=53.54 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=42.2
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
.++.|.++||.+|-|...+++.+.| +.++. .....|+.++|||+.|+.-.
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~-~~~~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIK-VLDDAETTVAGAAMFGWYGV 438 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeE-ecCcccchHHHHHHHHHHhc
Confidence 5899999999999999999999999 56664 34456899999999997653
No 143
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=90.62 E-value=0.46 Score=52.87 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=45.5
Q ss_pred HHHHHHc-CCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 5 EKSLRDA-KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 5 ~~~l~~a-~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
-+.|++. +. .++.|.++||.+|-|...+++.+.+ +.++.. . +.|+.|+|||+.|+.-.
T Consensus 377 ~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~-~~e~~a~GaA~~a~~~~ 435 (454)
T TIGR02627 377 LLELAELRGK---PISQLHIVGGGSQNAFLNQLCADAC-GIRVIA-G-PVEASTLGNIGVQLMAL 435 (454)
T ss_pred HHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHh-CCceEc-C-CchHHHHHHHHHHHHhc
Confidence 3445543 43 4889999999999999999999999 567743 3 36799999999998653
No 144
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=90.56 E-value=0.47 Score=53.56 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=41.7
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
.++.|.++||.+|-|...+++.+.| +.++.. .+..|+.|+|||+.|+.-
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~-~~~~e~~a~GaA~la~~~ 449 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVV-PESYESSCLGACILGLKA 449 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEe-cCCCCcchHHHHHHHHHh
Confidence 5899999999999999999999999 566643 445579999999999765
No 145
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=90.28 E-value=0.51 Score=49.24 Aligned_cols=46 Identities=30% Similarity=0.343 Sum_probs=42.4
Q ss_pred EEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 21 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 21 V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
|+|+||.+..-.+.+++++.+ +.++..+.+|.-+-|.|||++|...
T Consensus 346 iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 999999999999999999999 5788899999999999999998543
No 146
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.89 E-value=3.3 Score=45.96 Aligned_cols=99 Identities=21% Similarity=0.220 Sum_probs=65.6
Q ss_pred CCccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCC---CHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhccccc
Q psy5547 322 GPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYF---NDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKV 398 (714)
Q Consensus 322 ~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~---~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~ 398 (714)
+.-.++-+...+..|+..++..-+.++.++ ..|=+.. -.+.-+.+..+-+..|++.-.+=-|-+|--.+.+.-...
T Consensus 47 g~L~~eai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~ 125 (492)
T COG0248 47 GNLSEEAIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTL 125 (492)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcC
Confidence 455666777788888888877766676663 2222111 124456677778888998755555666655555554443
Q ss_pred CCCCCCCCcEEEEEEeCCceEEEEEEEE
Q psy5547 399 GSAAGSGERNVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 399 ~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 426 (714)
+ .....+|+|+|||+|.+++..-
T Consensus 126 ~-----~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 126 P-----RKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred C-----CCCCEEEEEecCCeEEEEEecC
Confidence 2 2566899999999999999864
No 147
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=89.80 E-value=0.59 Score=52.22 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHc-CCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 5 EKSLRDA-KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 5 ~~~l~~a-~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
-+.|++. +. .++.|.++||.+|-|...+++.+.+ +.++... +.|+.|+|||+.|+.-.
T Consensus 365 l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~ 423 (471)
T PRK10640 365 LHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTL 423 (471)
T ss_pred HHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHc
Confidence 3445543 43 4789999999999999999999999 5677433 34899999999987653
No 148
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=89.72 E-value=2.2 Score=47.96 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=66.3
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCCCCeE-EEeeCCCCC-HHHHHHHHHHHHHcCCCeeEeeechhHHHHHh-hcccc
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKTVSNA-VITVPAYFN-DSQRQATKDSGTIAGLNVLRIINEPTAAAIAY-GLDKK 397 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~-vitVPa~~~-~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~-~~~~~ 397 (714)
.|.-.++-+...+..|+...+..-...+.++ +++.-|.=. .+....+.++-+..|++. .+++-.+=|.+.| +....
T Consensus 49 ~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~ 127 (496)
T PRK11031 49 DNALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT 127 (496)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc
Confidence 3444555566666666666654433344432 222222212 234555666667779977 5666555555555 33322
Q ss_pred cCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHH
Q psy5547 398 VGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 451 (714)
Q Consensus 398 ~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l 451 (714)
.. ..+..+|+|+|||+|.+++++- +.+.. ..+.++|.-.+.+.+
T Consensus 128 l~-----~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl~lG~vrl~e~f 171 (496)
T PRK11031 128 TG-----GADQRLVVDIGGASTELVTGTG--AQATS---LFSLSMGCVTWLERY 171 (496)
T ss_pred cC-----CCCCEEEEEecCCeeeEEEecC--Cceee---eeEEeccchHHHHHh
Confidence 21 1235899999999999998863 22211 123567777765554
No 149
>PRK13317 pantothenate kinase; Provisional
Probab=89.35 E-value=0.51 Score=48.39 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=42.4
Q ss_pred cCCCeEEEec-CCcCcHHHHHHHHHHcC--CCcCCCCCCCchhhHHHHHHHHH
Q psy5547 16 AQIHDIVLVG-GSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 16 ~dId~V~LvG-GssriP~vq~~l~~~f~--~~~i~~~~n~deaVA~GAA~~aa 65 (714)
..++.|+++| |-++.|.+++.+++++. +.++...-||.-+.|+|||++|.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 4567899999 79999999999999873 45666677899999999999875
No 150
>PRK10854 exopolyphosphatase; Provisional
Probab=88.54 E-value=1.7 Score=49.10 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCeeEeeechhHHHHHh-hcccccCCCCCCCCcEEEEEEeCCceEEEEEEEE
Q psy5547 362 SQRQATKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 362 ~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~-~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 426 (714)
+....+.++-...|++. .+++..+=|.+.| +...... ..+..+|+|+|||+|.+++++-
T Consensus 97 N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~-----~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 97 NATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP-----EKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred CHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC-----CCCCeEEEEeCCCeEEEEEecC
Confidence 34455555666679976 5666655555555 3332221 1246899999999999999864
No 151
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.48 E-value=3.3 Score=42.84 Aligned_cols=77 Identities=19% Similarity=0.412 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCeeEeeechhHHHHHh-hcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCc
Q psy5547 364 RQATKDSGTIAGLNVLRIINEPTAAAIAY-GLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 442 (714)
Q Consensus 364 r~~l~~A~~~AGl~~~~li~Ep~AAa~~~-~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~l 442 (714)
...+.+.-...|++. .+++..+=|.+.| +..... ......+|+|+|||+|.+++++- +.+... .+.++
T Consensus 74 ~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l-----~~~~~~lviDIGGGStEl~~~~~--~~~~~~---~Sl~l 142 (285)
T PF02541_consen 74 DEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSL-----PPDKNGLVIDIGGGSTELILFEN--GKVVFS---QSLPL 142 (285)
T ss_dssp HHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS-----TTTSSEEEEEEESSEEEEEEEET--TEEEEE---EEES-
T ss_pred HHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc-----cccCCEEEEEECCCceEEEEEEC--CeeeEe---eeeeh
Confidence 344555556679876 4555555555544 332221 13466899999999999998863 322221 12578
Q ss_pred cHHHHHHHH
Q psy5547 443 GGEDFDNRM 451 (714)
Q Consensus 443 GG~~id~~l 451 (714)
|.-.+.+.+
T Consensus 143 G~vrl~e~~ 151 (285)
T PF02541_consen 143 GAVRLTERF 151 (285)
T ss_dssp -HHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876655
No 152
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=88.25 E-value=1.5 Score=47.44 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=62.5
Q ss_pred EEecHHH-HHHHHHHHHhhhhhHHHHHHHHcCCCcc-ccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhh
Q psy5547 509 TSVTRAR-FEELNADLFRGTMEPVEKSLRDAKMDKA-QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYG 586 (714)
Q Consensus 509 ~~itr~~-~~~~~~~~~~~i~~~i~~~l~~~~~~~~-~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~G 586 (714)
+-+||.. -+.+++..++.|.-...++++....+.. .++.+-+=||.+++.++.+...+.+ +.+|.++.+ .++.|.|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlG 442 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALG 442 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHH
Confidence 4444332 3445556666666555555554433322 5788889999999999999999999 888887754 4678999
Q ss_pred HHHHHHHHhCC
Q psy5547 587 AAVQAAILHGD 597 (714)
Q Consensus 587 Aa~~a~~l~~~ 597 (714)
||+.|+.-.|.
T Consensus 443 aA~lAGla~G~ 453 (499)
T COG0554 443 AAYLAGLAVGF 453 (499)
T ss_pred HHHHHhhhhCc
Confidence 99999987774
No 153
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=87.49 E-value=34 Score=35.86 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred ccchhhhHHHHHHHHHHHHHh--CCCCCeEEEeeCCCCCHH------------HHHHHHHHHH-HcCCCeeEeeechhHH
Q psy5547 324 TIEEVSSMVLTKMKETAEAYL--GKTVSNAVITVPAYFNDS------------QRQATKDSGT-IAGLNVLRIINEPTAA 388 (714)
Q Consensus 324 s~eev~a~~L~~l~~~~~~~~--~~~~~~~vitVPa~~~~~------------~r~~l~~A~~-~AGl~~~~li~Ep~AA 388 (714)
++++++..+.+.+.+..++.- ..++..+.|++|...+.. +...+.+..+ ..|++ +.+.++..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 455555555555544443321 124556778888654321 1112333333 34765 6788999999
Q ss_pred HHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEE
Q psy5547 389 AIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 424 (714)
Q Consensus 389 a~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~ 424 (714)
|++-...... ...++++++.+|.|- ..+++
T Consensus 111 alaE~~~g~~-----~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAG-----KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhccc-----CCCCcEEEEEeCCcc-EEEEE
Confidence 8865432211 134678888898774 44444
No 154
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=86.39 E-value=2.2 Score=45.44 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccC----CCCCchhhHhhHHHHHHH
Q psy5547 518 ELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK----SINPDEAVAYGAAVQAAI 593 (714)
Q Consensus 518 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~----~~~p~~ava~GAa~~a~~ 593 (714)
++..-+.+-+.+.|.+.++.... +++.|+++||+++.|+|.++|++.+++.+|.. ..+|+.-=|.+-|++|..
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~ 337 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYR 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHH
Confidence 33444444445555555555432 26899999999999999999999997755533 234444334455666654
Q ss_pred H
Q psy5547 594 L 594 (714)
Q Consensus 594 l 594 (714)
-
T Consensus 338 ~ 338 (364)
T PF03702_consen 338 R 338 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=84.94 E-value=0.84 Score=48.60 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCCccCCCeEEEecCCcCcHHHHHHHHHHcC
Q psy5547 12 KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 12 ~l~~~dId~V~LvGGssriP~vq~~l~~~f~ 42 (714)
...-..|+.|+|+||++++|.+.+.|++.++
T Consensus 269 ~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 269 QSGGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp H------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred cCCCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 3445689999999999999999999999995
No 156
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=83.48 E-value=1.9 Score=47.25 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=50.1
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
.|-+++++.|+. ||.|.+.||-.+-|.+.+.+.+..| .++ .-.-.|+++++|+|+.|+.-
T Consensus 420 ~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg-~~v-~i~~s~~a~llGsAm~~avA 479 (544)
T COG1069 420 AIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTG-RPV-VIPASDQAVLLGAAMFAAVA 479 (544)
T ss_pred HHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcC-CeE-EeecccchhhhHHHHHHHHH
Confidence 456778888876 8999999999999999999999985 444 33478999999999999755
No 157
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=83.36 E-value=0.66 Score=50.52 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCc--cCCCeEEEecCCcCcHHHHHHHHHHcCC-------CcCCCCC-CCchhhHHHHHHHHHH
Q psy5547 4 VEKSLRDAKMDK--AQIHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSI-NPDEAVAYGAAVQAAI 66 (714)
Q Consensus 4 i~~~l~~a~l~~--~dId~V~LvGGssriP~vq~~l~~~f~~-------~~i~~~~-n~deaVA~GAA~~aa~ 66 (714)
|.+++....... .=...|+|+||+|++|-+.+.|.+-+.. .++.... ++..++=.||+++|..
T Consensus 295 I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 295 ILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 445555543221 1247899999999999999999776532 1222333 7889999999999853
No 158
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=83.14 E-value=0.47 Score=51.24 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=46.2
Q ss_pred hHHHHHHHcC--CCccCCCeEEEecCCcCcHHHHHHHHHHcCCC---------cCCCCCCCchhhHHHHHHHHHH
Q psy5547 3 PVEKSLRDAK--MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---------ELNKSINPDEAVAYGAAVQAAI 66 (714)
Q Consensus 3 ~i~~~l~~a~--l~~~dId~V~LvGGssriP~vq~~l~~~f~~~---------~i~~~~n~deaVA~GAA~~aa~ 66 (714)
.|.++|.... +...-++.|+|+||+|++|-+.+.|.+.+... .+....+|..++-+||+++|..
T Consensus 273 ~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 273 AIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 3455565543 23334688999999999999999998877421 2234567889999999999854
No 159
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=82.77 E-value=40 Score=35.20 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=23.1
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHc
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f 568 (714)
.++.|+|.||.+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 160
>KOG2517|consensus
Probab=82.65 E-value=3.1 Score=45.96 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=46.1
Q ss_pred cCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCC
Q psy5547 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 70 (714)
Q Consensus 16 ~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~ 70 (714)
..|+.+-+-||-|+=|.+-+.+.+.+| .++.+..++|- |+.|||+.|+..++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g-~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILG-LPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhC-CccccccchhH-HHHHHHHHHHhhcCC
Confidence 457779999999999999999999995 78878888877 999999999987543
No 161
>PRK14878 UGMP family protein; Provisional
Probab=82.27 E-value=63 Score=34.03 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.8
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHc
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f 568 (714)
.+..|+|+||.+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999987
No 162
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=82.08 E-value=74 Score=33.76 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=60.6
Q ss_pred CCccchhhhHHHHHHHHHHHHHh---CC---CCCeEEEee-CCCCCHHH--HHHHHHHHHHcCCCeeEeeechhHHHHHh
Q psy5547 322 GPTIEEVSSMVLTKMKETAEAYL---GK---TVSNAVITV-PAYFNDSQ--RQATKDSGTIAGLNVLRIINEPTAAAIAY 392 (714)
Q Consensus 322 ~~s~eev~a~~L~~l~~~~~~~~---~~---~~~~~vitV-Pa~~~~~~--r~~l~~A~~~AGl~~~~li~Ep~AAa~~~ 392 (714)
|.-|++....=.+.|...+++.+ +. .++.+.+|. |.-|+.-. -..-+..+...|.+.+. ++.-+|=+++-
T Consensus 39 GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Plig-V~HlegHi~a~ 117 (345)
T PTZ00340 39 GFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVG-VNHCVAHIEMG 117 (345)
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEee-cchHHHHHHHH
Confidence 67777766655555554444433 22 356666666 55444322 11122233344554432 44444433332
Q ss_pred hcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHH
Q psy5547 393 GLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 450 (714)
Q Consensus 393 ~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~ 450 (714)
.+..... .+ +++=+-||+|.+.. ...+.++++...-|.. -|+.||+.
T Consensus 118 ~l~~~~~-----~P---l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dda-~Gea~DKv 164 (345)
T PTZ00340 118 RLVTGAE-----NP---VVLYVSGGNTQVIA--YSEHRYRIFGETIDIA-VGNCLDRF 164 (345)
T ss_pred hhccCCC-----CC---eEEEEeCCceEEEE--ecCCeEEEEEeecccc-hhHHHHHH
Confidence 2221110 12 66667888998776 3456788888776554 46777743
No 163
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=81.86 E-value=7.5 Score=40.54 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCeeEeeechhHHHHHhh-cccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCC
Q psy5547 362 SQRQATKDSGTIAGLNVLRIINEPTAAAIAYG-LDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDT 440 (714)
Q Consensus 362 ~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~-~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~ 440 (714)
+....+.+.-...|++. .+++..+=|.+.|. ...... . ...+++|+|||+|.++++.-. .+. .....
T Consensus 86 N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~-----~-~~~~v~DiGGGSte~~~~~~~--~~~---~~~Sl 153 (300)
T TIGR03706 86 NGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP-----I-ADGLVVDIGGGSTELILGKDF--EPG---EGVSL 153 (300)
T ss_pred CHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC-----C-CCcEEEEecCCeEEEEEecCC--CEe---EEEEE
Confidence 44444445556679876 67777777776663 222211 1 124999999999999987532 211 11124
Q ss_pred CccHHHHHHH
Q psy5547 441 HLGGEDFDNR 450 (714)
Q Consensus 441 ~lGG~~id~~ 450 (714)
++|...+.+.
T Consensus 154 ~lG~vrl~e~ 163 (300)
T TIGR03706 154 PLGCVRLTEQ 163 (300)
T ss_pred ccceEEhHHh
Confidence 5666555544
No 164
>PLN02666 5-oxoprolinase
Probab=81.67 E-value=18 Score=45.25 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=46.4
Q ss_pred ecHHHHHHHHHHHHh-hhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCCCCCchhhHhhHHH
Q psy5547 511 VTRARFEELNADLFR-GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 511 itr~~~~~~~~~~~~-~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~ 589 (714)
++-++...-+..+++ ...+.|+.+....+.++.+ -.++..||.+ |...-.|.+.++-..+..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 344444443333333 3344555555555555543 2344445444 88888999999434488888998888999875
Q ss_pred H
Q psy5547 590 Q 590 (714)
Q Consensus 590 ~ 590 (714)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
No 165
>PLN02920 pantothenate kinase 1
Probab=80.40 E-value=12 Score=40.06 Aligned_cols=50 Identities=12% Similarity=-0.086 Sum_probs=38.3
Q ss_pred ccccceEEEEcCCCCcH-HHHHHHHHHc-----CCCcccCCCCCchhhHhhHHHHH
Q psy5547 542 KAQIHDIVLVGGSTRIP-KVQKLLQDFF-----NGKELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 542 ~~~i~~ViLvGG~s~~p-~l~~~l~~~f-----~~~~v~~~~~p~~ava~GAa~~a 591 (714)
..+++.|+++|.+.+.+ ..++.|.-.+ .+.+.....+....-|.||.+..
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 35688999999999998 7777554433 45567777888899999998654
No 166
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=80.35 E-value=2.6 Score=47.50 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=39.3
Q ss_pred cCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHh
Q psy5547 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68 (714)
Q Consensus 16 ~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~ 68 (714)
..++.|.++||.+|-|...+++.+.|| .++. .....|+.+.|+|+.++.-.
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g-~~v~-~~~~~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALG-LPVV-VPEVEEAGALGGAALAAAAL 450 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcC-CeeE-ecCcccchHHHHHHHHHHHh
Confidence 446799999999999999999999994 5654 34456777777777666553
No 167
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=78.90 E-value=12 Score=38.29 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=53.1
Q ss_pred EecHHHHHHHHHH------HHhhhhhHHHHHHHHcCCCccccceEEEEcC--CCCcH-HHHHHHHHHcCCCcccCCCCCc
Q psy5547 510 SVTRARFEELNAD------LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGG--STRIP-KVQKLLQDFFNGKELNKSINPD 580 (714)
Q Consensus 510 ~itr~~~~~~~~~------~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG--~s~~p-~l~~~l~~~f~~~~v~~~~~p~ 580 (714)
..+++||.+.... -++.+...+..-+............|+|.|- +++.| .+++.|++.| ..++..- ..
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L-~~- 298 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVL-DS- 298 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEe-cc-
Confidence 3456666654422 2333333333333322222123358999988 99999 9999999999 4444322 33
Q ss_pred hhhHhhHHHHHHHHhCC
Q psy5547 581 EAVAYGAAVQAAILHGD 597 (714)
Q Consensus 581 ~ava~GAa~~a~~l~~~ 597 (714)
...|.|+|+.|.-+.+.
T Consensus 299 ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 299 ESAAIGLALIAEDIFSG 315 (326)
T ss_pred hhhhhhHHHHHHHHhCC
Confidence 77899999999988765
No 168
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=77.75 E-value=2.9 Score=44.62 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=26.0
Q ss_pred CccCCCeEEEecCCcCcHHHHHHHHHHcC
Q psy5547 14 DKAQIHDIVLVGGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 14 ~~~dId~V~LvGGssriP~vq~~l~~~f~ 42 (714)
....++.|+|+||.+++|.+.+.|++.|+
T Consensus 279 ~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 279 GTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred CCcccceEEEECccccchhHHHHHHHHHC
Confidence 34469999999999999999999999995
No 169
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=77.75 E-value=9 Score=40.84 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=42.0
Q ss_pred HHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCCcccCC----CCCchhhHhhHHHHHHH
Q psy5547 523 LFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS----INPDEAVAYGAAVQAAI 593 (714)
Q Consensus 523 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~----~~p~~ava~GAa~~a~~ 593 (714)
+.+-+...|.+.+.... ..++.|+++||+++.|+|.++|++.++ .++... .+|+.-=|..-|++|..
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33334455555554432 224689999999999999999999996 444322 34444444455666643
No 170
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=76.59 E-value=45 Score=35.18 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=41.3
Q ss_pred CccccceEEEEcCCCCcHHHHHHHHHHcCCCcccC----CCCCchhhHhhHHHHHHHH
Q psy5547 541 DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK----SINPDEAVAYGAAVQAAIL 594 (714)
Q Consensus 541 ~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~----~~~p~~ava~GAa~~a~~l 594 (714)
...+.+..+++||+.+.|++.++|...+++..|.. ..+++..=|.+-|++|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34567899999999999999999999997766543 3466666666667777654
No 171
>PRK03011 butyrate kinase; Provisional
Probab=76.24 E-value=5.6 Score=42.48 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=36.5
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcC---CCcccCCCCCchhhHhhHHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFN---GKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~---~~~v~~~~~p~~ava~GAa~ 589 (714)
++|.|+|.||.+..+.+++.|++.+. ...+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 68999999999999999999998873 33455555666799999874
No 172
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=75.75 E-value=14 Score=40.33 Aligned_cols=113 Identities=23% Similarity=0.245 Sum_probs=66.4
Q ss_pred chhhhHHHHHHHHHHHHHhCCCC-----CeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEee---echhHHHHHhhcccc
Q psy5547 326 EEVSSMVLTKMKETAEAYLGKTV-----SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRII---NEPTAAAIAYGLDKK 397 (714)
Q Consensus 326 eev~a~~L~~l~~~~~~~~~~~~-----~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li---~Ep~AAa~~~~~~~~ 397 (714)
..+=+.-++.+...--+..|..+ .-|+||==+--.+++|..+...+..||==++... -|..=|+...+....
T Consensus 58 ~~ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~ 137 (473)
T PF06277_consen 58 TEIDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL 137 (473)
T ss_pred CccCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH
Confidence 34445555555544444444432 2367887777778889988888888883222211 244444443322211
Q ss_pred cCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHH
Q psy5547 398 VGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDF 447 (714)
Q Consensus 398 ~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~i 447 (714)
....+..++=+|+||||+.+++++.. ++..+. +.++||+-|
T Consensus 138 ----S~~~~~~V~NiDIGGGTtN~avf~~G----~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 138 ----SKEHHTVVANIDIGGGTTNIAVFDNG----EVIDTA-CLDIGGRLI 178 (473)
T ss_pred ----hhhhCCeEEEEEeCCCceeEEEEECC----EEEEEE-EEeeccEEE
Confidence 11256788899999999999999752 222222 256777654
No 173
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=75.75 E-value=1.2e+02 Score=32.53 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=55.4
Q ss_pred EEecHHHHHHHHHHHHhhhh-hHHHHHHHHcCCCccccce-EEEEcCCCCcHHHHHHHHHHcCCCcccC-CCCCchhhHh
Q psy5547 509 TSVTRARFEELNADLFRGTM-EPVEKSLRDAKMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEAVAY 585 (714)
Q Consensus 509 ~~itr~~~~~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~l~~~l~~~f~~~~v~~-~~~p~~ava~ 585 (714)
..-.+.++...++..+++++ ..++..++..+ ++. ++|.||.+..-..-..|.+..+-..+.. |.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34567778777777777664 45555666555 345 9999999998888888888743334443 3445678999
Q ss_pred hHHHHHHHHhC
Q psy5547 586 GAAVQAAILHG 596 (714)
Q Consensus 586 GAa~~a~~l~~ 596 (714)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986654
No 174
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=74.91 E-value=44 Score=33.50 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=82.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHh----hcCCccCHHHHHHHHHHHHHhhhHHHHHHHhcC--CCCCC-CCCCCCCCCCC
Q psy5547 245 LKDKISSAERTQILDKCNDVIKWL----DSNQLAEKEEFEDKQKELEAICNPIITKLYQAG--GAPGG-FPGAPGAAPGA 317 (714)
Q Consensus 245 ~~~~~s~~e~~~l~~~l~e~~~WL----~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~~--~rp~~-~~~~~~~~~~~ 317 (714)
+.-+.|++--..|..-|+.+++|= ++.+ +.... -+|.++--+....+.+.- ..|.- +. ...++
T Consensus 18 ~~V~at~~AA~Ti~Ddl~~V~~~GI~I~~~~p-~~~~~-----i~l~D~D~~~~~~~l~~fg~~~p~~~va----vAvQD 87 (254)
T PF08735_consen 18 LRVYATPDAALTIHDDLERVRAMGIEITEEPP-AGAVP-----IELGDVDPEALRGALSAFGLELPFDVVA----VAVQD 87 (254)
T ss_pred CcEEEcHHHHhhhccCHHHHHhCCeEEEeccC-CCCcc-----eeeccCCHHHHHHHHHHcCCCCCcceeE----EEecc
Confidence 455677777777777777787761 2221 11111 112222222222333322 22322 11 22344
Q ss_pred CCCCCCccchhhhHHHHH--HHHHHHHHhCCCCCeEEE--eeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhh
Q psy5547 318 GAGPGPTIEEVSSMVLTK--MKETAEAYLGKTVSNAVI--TVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYG 393 (714)
Q Consensus 318 ~~~~~~s~eev~a~~L~~--l~~~~~~~~~~~~~~~vi--tVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~ 393 (714)
+ |++|. .+-...+. +++.. .-+..+..++. .+|.+|+. -+++++.+..+|.+. .+.+--.||.+..+
T Consensus 88 H---G~~p~-~SnR~~RF~~~~~~L--~~g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal 158 (254)
T PF08735_consen 88 H---GFSPG-QSNRIFRFELWREFL--EEGGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGAL 158 (254)
T ss_pred c---CCCCC-CccHHHHHHHHHHHH--hcCCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhh
Confidence 4 55555 44444332 22222 22456677888 89988764 335556666666666 44555555555555
Q ss_pred cccccCCCCCCCCcEEEEEEeCCceEEEEEE
Q psy5547 394 LDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 424 (714)
Q Consensus 394 ~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~ 424 (714)
.+... .....++++|+|=|.|=..++
T Consensus 159 ~d~~v-----~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 159 CDPEV-----SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred cChhh-----hccCCeEEEEeCCccEEEEEE
Confidence 54332 246789999999998888777
No 175
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=74.54 E-value=5 Score=42.26 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=38.5
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHH
Q psy5547 15 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 15 ~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~a 64 (714)
..+++.|+|+||++. .+++.|++.|+...+...-||.-|.|+|=..++
T Consensus 271 ~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 271 PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 457999999999998 668999999976444445688899999977665
No 176
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=73.05 E-value=5.8 Score=43.06 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=52.3
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCCC-cCCC----------CCCCchhhHHHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-ELNK----------SINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~-~i~~----------~~n~deaVA~GAA~~aa~l 67 (714)
+.++..|+++++...-...|+|+||++.||.+.+..++.|+.. .+.. -.||--+.|.|.-+|++..
T Consensus 305 ~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 305 ELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred HHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 4567889999999777789999999999999999999999531 1111 2357888999998888754
No 177
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=72.77 E-value=1.8 Score=44.47 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=51.2
Q ss_pred hHHHHHHHc--CCCccCCCe-EEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 3 PVEKSLRDA--KMDKAQIHD-IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 3 ~i~~~l~~a--~l~~~dId~-V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
.++.+|++. .|..+=++. ++|+||.+-+--+.+.|++.. +-++...-||-.|||.|+.+..+.+
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhh
Confidence 455666653 345555666 999999999999999999988 4566677899999999999988776
No 178
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.29 E-value=5.5 Score=46.09 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCC
Q psy5547 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGE 406 (714)
Q Consensus 327 ev~a~~L~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~ 406 (714)
.++..||+.+.+..+.. |.+. .+.+.==.. -+..+-..-+.+...+.+=|.|-.++...-.... .+
T Consensus 213 pi~~~yl~~v~~~l~~~-g~~~-~l~~m~sdG-------gl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~-----~g 278 (674)
T COG0145 213 PILRRYLEAVKDALKER-GIKA-RLMVMQSDG-------GLVSAEEAREKPVETILSGPAAGVVGAAYLTGLK-----AG 278 (674)
T ss_pred HHHHHHHHHHHHHHHhc-CCCc-eeEEEecCC-------ccccHHHHhcCCeeeEeeccHHHHHHHHHhcccc-----cC
Confidence 45677777777755543 2211 111111000 1222333345677778889988777654431211 22
Q ss_pred cEEEEEEeCCceEEEEEEE
Q psy5547 407 RNVLIFDLGGGTFDVSILT 425 (714)
Q Consensus 407 ~~vlVvD~GggT~Dvsv~~ 425 (714)
+++++|+||.|||++++.
T Consensus 279 -~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 279 -NAIVFDMGGTSTDVALII 296 (674)
T ss_pred -CEEEEEcCCcceeeeeee
Confidence 599999999999999987
No 179
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=69.95 E-value=10 Score=38.74 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=40.5
Q ss_pred CCCeEEEecC--CcCcH-HHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCC
Q psy5547 17 QIHDIVLVGG--STRIP-KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 70 (714)
Q Consensus 17 dId~V~LvGG--ssriP-~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~ 70 (714)
..+.|+|.|- ++|.| -|++.|++.|. .++ +.+.. ++.|.|+|+.|.-+.+.
T Consensus 262 ~~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V-~~L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 262 KEAGVVLAGSGGTLREPINFSGKIKRVLS-CKV-LVLDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCCcEEEeCcchhccCchHHHHHHHHHhC-CCe-EEecc-hhhhhhHHHHHHHHhCC
Confidence 3458999987 99999 99999999994 333 34444 89999999999877554
No 180
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=69.42 E-value=6.4 Score=46.07 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=36.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcC--CCcccCCC---CCchhhHhhHHHHHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI---NPDEAVAYGAAVQAA 592 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~ava~GAa~~a~ 592 (714)
.++.|+|+||..+..++++.|.+.+. +.++..+. -.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998873 34443332 345688888887763
No 181
>PRK00976 hypothetical protein; Provisional
Probab=69.26 E-value=36 Score=35.56 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=39.3
Q ss_pred ccceEEEEcCCCCcH--HHHHHHHHHcCCCcccCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 544 QIHDIVLVGGSTRIP--KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p--~l~~~l~~~f~~~~v~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
+++.|+|-||.++.+ .+.+.+++.+.. . ...-...+-++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhCC
Confidence 468899999999998 899999998832 2 22234578999999999877554
No 182
>PRK07058 acetate kinase; Provisional
Probab=68.58 E-value=13 Score=39.75 Aligned_cols=44 Identities=7% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC-CcHHHHHHHHHHc
Q psy5547 521 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFF 568 (714)
Q Consensus 521 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f 568 (714)
+-+..++.+.|-...... ..+|.|+++||-+ +++.+|+.|.+.+
T Consensus 299 d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 299 DLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 334444444444333322 4689999999999 9999999999987
No 183
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=67.54 E-value=18 Score=27.37 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q psy5547 338 ETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 378 (714)
Q Consensus 338 ~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~ 378 (714)
+.++.+.... ...++.|+.++..+|..+.+.|...||..
T Consensus 6 ~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 6 KALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3444455433 67899999999999999999999999865
No 184
>PF13941 MutL: MutL protein
Probab=65.12 E-value=81 Score=34.82 Aligned_cols=183 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCeeE------eeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEE-----------
Q psy5547 363 QRQATKDSGTIAGLNVLR------IINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILT----------- 425 (714)
Q Consensus 363 ~r~~l~~A~~~AGl~~~~------li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~----------- 425 (714)
++-.+++..+.-|++.+. +++=|.|.....-+-..- ....+|+||+||-||||-.+.
T Consensus 204 ~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~------~~g~llvVDIGGATTDVhSv~~~~~~~~~~~~ 277 (457)
T PF13941_consen 204 REVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEG------GIGDLLVVDIGGATTDVHSVAEGSPEIPGIVL 277 (457)
T ss_pred HHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhc------ccCCEEEEEccCcccchhhhccCCcccccccc
Q ss_pred --EeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHHHhHhcCCCCeeEEEEecccC
Q psy5547 426 --IEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503 (714)
Q Consensus 426 --~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~i~i~~~~~ 503 (714)
-.-..-.|...-| ...+-..+-+..-..-..++- ..+.....+...++........-+..
T Consensus 278 ~~ep~~kRTVEGDLG-mr~sa~~l~e~~g~~~l~~~l--------~~~~~~~~l~~~~~~~~~~p~~iP~t--------- 339 (457)
T PF13941_consen 278 KPEPYAKRTVEGDLG-MRYSAPNLLEAAGEEELRRWL--------PFPISEEELREYIENRMANPDTIPQT--------- 339 (457)
T ss_pred CCcchhhhheecccc-ceechHHHHHhcchHHHHHHc--------CCcccHHHHHHHHHHHHhCCCCCCCC---------
Q ss_pred CceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCcc----------------ccceEEEEcC-CCCcHHHHHHHHH
Q psy5547 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKA----------------QIHDIVLVGG-STRIPKVQKLLQD 566 (714)
Q Consensus 504 ~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~----------------~i~~ViLvGG-~s~~p~l~~~l~~ 566 (714)
+=+..++..+.+..-.+.-.=....+... .++.||-+|| .++.|.-.+.|+.
T Consensus 340 -----------~~e~~~d~~LA~~A~~~A~~RHag~~~~~~~p~g~~~~~~GkDL~~v~~iIgtGGvL~h~~~~~~il~~ 408 (457)
T PF13941_consen 340 -----------EEELAFDQALAREAVELAVERHAGRIRQVYTPMGRVYVQEGKDLTRVKYIIGTGGVLTHSPNPEEILKA 408 (457)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcCcCCccccCCcceeeecCcccccCCEEEEeCccccCCCCHHHHHHH
Q ss_pred Hc--CCCcccCCCCCc
Q psy5547 567 FF--NGKELNKSINPD 580 (714)
Q Consensus 567 ~f--~~~~v~~~~~p~ 580 (714)
.+ .+..+..+.+|.
T Consensus 409 ~~~~~~~~ll~p~~~~ 424 (457)
T PF13941_consen 409 ALDAEDGGLLPPENPR 424 (457)
T ss_pred HhhccCCCccCCCCCe
No 185
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=63.51 E-value=15 Score=36.94 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHhhhhhHHHHHHHHc-CCCccccceEEEEcCCCCcHHHHHHHHHHc---CCCcccCCCCCchhhHhhHHH
Q psy5547 523 LFRGTMEPVEKSLRDA-KMDKAQIHDIVLVGGSTRIPKVQKLLQDFF---NGKELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 523 ~~~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f---~~~~v~~~~~p~~ava~GAa~ 589 (714)
.++...-.|.+.+..+ ..-+..+|.|+|+||.++...+-++|.+.. ....+....+-.+|.|.||..
T Consensus 274 ~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 274 AYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 3333333343333332 233567899999999999999999999876 223344455666789988863
No 186
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.82 E-value=62 Score=36.99 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=8.7
Q ss_pred CeeEeeechhHH
Q psy5547 377 NVLRIINEPTAA 388 (714)
Q Consensus 377 ~~~~li~Ep~AA 388 (714)
+.+.+++||.++
T Consensus 497 ~~~lilDEp~~~ 508 (562)
T PHA02562 497 TNLLILDEVFDG 508 (562)
T ss_pred cCeEEEecccCc
Confidence 467788999743
No 187
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=62.81 E-value=5.9 Score=34.86 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=30.8
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~~ 44 (714)
..|+++|+++|++++|||.|+..|-+|.. +.=.+.|.+.|+..
T Consensus 29 ~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 29 RAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 35889999999999999999999988886 44456788888643
No 188
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=62.20 E-value=19 Score=37.65 Aligned_cols=230 Identities=17% Similarity=0.238 Sum_probs=109.0
Q ss_pred CCccchhhhHHHHHHHHHHHHHh---CC---CCCeEEEeeCCCCCHHHHHHHH--HH-HHHcCCCeeEeeechhHHHHHh
Q psy5547 322 GPTIEEVSSMVLTKMKETAEAYL---GK---TVSNAVITVPAYFNDSQRQATK--DS-GTIAGLNVLRIINEPTAAAIAY 392 (714)
Q Consensus 322 ~~s~eev~a~~L~~l~~~~~~~~---~~---~~~~~vitVPa~~~~~~r~~l~--~A-~~~AGl~~~~li~Ep~AAa~~~ 392 (714)
|.-||..+..-.+.+-...++.+ +. .++-+.+|.=......=+--.. ++ +...+.+. .=|+..++=.++-
T Consensus 40 GVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPl-i~VnH~~gHi~a~ 118 (342)
T COG0533 40 GVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPL-IPVNHLEGHIEAA 118 (342)
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCE-eecchHHHHHHHH
Confidence 67788777777666655555443 32 4555666665554443222211 11 22223322 2344444433332
Q ss_pred hcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHH
Q psy5547 393 GLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKR 472 (714)
Q Consensus 393 ~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~ 472 (714)
.+.... ....+..=+-||.|.+-.++- -+.++++...-|..+ |+.||. +.+..+.....-+
T Consensus 119 ~l~~~~-------~~p~v~LlVSGGHTqli~~~~-~g~y~ilGeTlDdA~-Gea~DK---------vAR~lGL~yPGGp- 179 (342)
T COG0533 119 RLETGL-------AFPPVALLVSGGHTQLIAVRG-IGRYEVLGETLDDAA-GEAFDK---------VARLLGLGYPGGP- 179 (342)
T ss_pred HhccCC-------CCCcEEEEEecCceEEEEEcC-CCcEEEEeeechhhh-hHHHHH---------HHHHhCCCCCCcH-
Confidence 222110 122344445677777665543 255777766554443 556653 2223333333322
Q ss_pred HHHHHHHHHHHHhHhcCCCCeeEEEEec-ccCC--ceeEE------------------EecHHHHHHHHHHH----Hhhh
Q psy5547 473 ALRRLRTACERAKRTLSSSTQASIEIDS-LFEG--VDFYT------------------SVTRARFEELNADL----FRGT 527 (714)
Q Consensus 473 ~~~~l~~~~e~~K~~ls~~~~~~i~i~~-~~~~--~~~~~------------------~itr~~~~~~~~~~----~~~i 527 (714)
.+.+.|++.... .+.++. ...+ .||++ .+..++.++++..+ ++-+
T Consensus 180 ---~Ie~lA~~G~~~-------~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L 249 (342)
T COG0533 180 ---AIEKLAKKGDPD-------AFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDML 249 (342)
T ss_pred ---HHHHHHhcCCCC-------ceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 222222222110 011111 1111 11211 12233444454443 3444
Q ss_pred hhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcC--CCcccCCCCCchhhHhhH
Q psy5547 528 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGA 587 (714)
Q Consensus 528 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~~p~~ava~GA 587 (714)
.+..+++++..+ .+.++++||-+...+||+++++... +..+..+ .++.|.--||
T Consensus 250 ~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p-~~~lCtDNaa 305 (342)
T COG0533 250 VEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIP-PLELCTDNAA 305 (342)
T ss_pred HHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcC-ChHhccchHH
Confidence 455555555443 4679999999999999999999872 3333333 4555544444
No 189
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=60.07 E-value=6.3 Score=41.14 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=16.9
Q ss_pred EEEEEEeCCceEEEEEEEE
Q psy5547 408 NVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 408 ~vlVvD~GggT~Dvsv~~~ 426 (714)
.++++|+||.|+|++++.-
T Consensus 129 ~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CEEEEEcCccceeeEEecC
Confidence 4899999999999999863
No 190
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=58.60 E-value=18 Score=36.91 Aligned_cols=44 Identities=32% Similarity=0.436 Sum_probs=33.7
Q ss_pred EEEecCCcCcHHHHHHHHHHc----CCCcCCCCCCCchhhHHHHHHHH
Q psy5547 21 IVLVGGSTRIPKVQKLLQDFF----NGKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 21 V~LvGGssriP~vq~~l~~~f----~~~~i~~~~n~deaVA~GAA~~a 64 (714)
|+|.||-.+.+.+++.+.+.+ ...++....+|....|.|||++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 999999999977777674444 23344456788999999999986
No 191
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=56.13 E-value=43 Score=25.43 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCee
Q psy5547 337 KETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVL 379 (714)
Q Consensus 337 ~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~ 379 (714)
.+.+..+.... ..-.++.|+.++..+|..+.+.|...||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 44555555433 4668999999999999999999999999763
No 192
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=55.27 E-value=21 Score=42.66 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=39.9
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCC-------------------cCCCCCCCchhhHHHHHHHHHHH
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGK-------------------ELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~-------------------~i~~~~n~deaVA~GAA~~aa~l 67 (714)
+-|-|+|.|=-||+|.||..+.+..+-. +-.+--||-..||.||.+++-..
T Consensus 766 ~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 766 DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecccccCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 4588999999999999999999886311 11234599999999999887544
No 193
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=54.91 E-value=3.9 Score=44.11 Aligned_cols=62 Identities=27% Similarity=0.359 Sum_probs=38.8
Q ss_pred HHHHHHHcCCC--ccCCCeEEEecCCcCcHHHHHHHHHHcCCC-------cCCCCCCCchhhHHHHHHHHH
Q psy5547 4 VEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 4 i~~~l~~a~l~--~~dId~V~LvGGssriP~vq~~l~~~f~~~-------~i~~~~n~deaVA~GAA~~aa 65 (714)
|.++|+++... .+=.+.|+|+||+|++|-+.+.|.+-+... .+....++.-++=.||+++|.
T Consensus 276 i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 276 VYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 44555554321 222367999999999999999888776211 122233455667778777764
No 194
>KOG0681|consensus
Probab=54.41 E-value=1e+02 Score=34.18 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCC----CCeEEEeeCCCCCHHHHHHHHHH-HHHcCCCeeEeeechhHHHHHhhcccccCCCCCCC
Q psy5547 331 MVLTKMKETAEAYLGKT----VSNAVITVPAYFNDSQRQATKDS-GTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSG 405 (714)
Q Consensus 331 ~~L~~l~~~~~~~~~~~----~~~~vitVPa~~~~~~r~~l~~A-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~ 405 (714)
.++.++.+.+-.++|.. ...+++|=+..-....|+.|.+. .+..|++.+.+=-... +++..+... ..
T Consensus 95 el~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~~~-----~~ 166 (645)
T KOG0681|consen 95 ELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNYGK-----SS 166 (645)
T ss_pred HHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhccCc-----cc
Confidence 45666666666667653 34588898888777889988886 4557887765422222 222111111 13
Q ss_pred CcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q psy5547 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 457 (714)
Q Consensus 406 ~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~ 457 (714)
+...+|+++|..+|-|-.+.-+...+ .. ..-.++||.....-|.+.+..
T Consensus 167 ~~~~liis~g~~~T~vipvldG~~il--~~-~kRiN~GG~qa~dYL~~Lmq~ 215 (645)
T KOG0681|consen 167 NKSGLIISMGHSATHVIPVLDGRLIL--KD-VKRINWGGYQAGDYLSRLMQL 215 (645)
T ss_pred CcceEEEecCCCcceeEEEecCchhh--hc-ceeeccCcchHHHHHHHHHhc
Confidence 34679999999999887665322222 22 223678888776666555543
No 195
>PRK00976 hypothetical protein; Provisional
Probab=51.96 E-value=35 Score=35.64 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCCeEEEecCCcCcH--HHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhCC
Q psy5547 17 QIHDIVLVGGSTRIP--KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD 70 (714)
Q Consensus 17 dId~V~LvGGssriP--~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~~ 70 (714)
|.+.|+|-||-++++ .+.+.+++++.. . ...-.++|.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhCC
Confidence 578899999999998 788999888843 2 23335699999999998776443
No 196
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=51.94 E-value=42 Score=33.55 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=42.4
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcC--cHHHHHHHHHHcCC-CcCCCCCCCchhhHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTR--IPKVQKLLQDFFNG-KELNKSINPDEAVAYGAAVQ 63 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssr--iP~vq~~l~~~f~~-~~i~~~~n~deaVA~GAA~~ 63 (714)
+.++++|+++|++++|||.|++...+.- .|.+...|...+|- .....+++ .-|.+-..|+.
T Consensus 13 ~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~~~~~~~i~-~~C~s~~~al~ 76 (254)
T cd00327 13 EAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGISGGPAYSVN-QACATGLTALA 76 (254)
T ss_pred HHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCCCCCcceec-cHhHHHHHHHH
Confidence 3578899999999999999987654333 68888899999875 33444454 34444444443
No 197
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=51.41 E-value=44 Score=37.99 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=37.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHc--CCCcccCCC---CCchhhHhhHHHHHHHHhC
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFF--NGKELNKSI---NPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f--~~~~v~~~~---~p~~ava~GAa~~a~~l~~ 596 (714)
.++.|+|+||.+...++++.|.+.+ .+.++..+. -.|.+++.|++.+.....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 4678999999999999999999776 233444443 3457788887765554444
No 198
>KOG2708|consensus
Probab=51.20 E-value=1.3e+02 Score=29.48 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHcCCC-cccCCCCCchhhHhhHHH
Q psy5547 522 DLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-ELNKSINPDEAVAYGAAV 589 (714)
Q Consensus 522 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~-~v~~~~~p~~ava~GAa~ 589 (714)
.+|.-+.+.-++++.-++ -+.|++|||-+..-.+|+++....... ......|-..++--|+-+
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHH
Confidence 334444444455554333 367999999999999999999988332 122334555666666654
No 199
>PTZ00281 actin; Provisional
Probab=50.42 E-value=3 Score=45.12 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCCC-------cCCCCCCCchhhHHHHHHHHH
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~~-------~i~~~~n~deaVA~GAA~~aa 65 (714)
.+.|+|+||+|.+|-+.+.|..-+... ++....++..++=+||+++|.
T Consensus 295 ~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 295 YGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 367999999999999888877665211 123334566788888888875
No 200
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=50.30 E-value=17 Score=38.29 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred CccCCCeEEEecCCcCcHHHHHHHHHHcC--CCcCCCCCCCchhhHHHH
Q psy5547 14 DKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGA 60 (714)
Q Consensus 14 ~~~dId~V~LvGGssriP~vq~~l~~~f~--~~~i~~~~n~deaVA~GA 60 (714)
...+++.|+||||++. .+.+.|++.|+ ...+...-||..|-|+|=
T Consensus 269 ~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~ 315 (318)
T PF06406_consen 269 DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGF 315 (318)
T ss_dssp TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHH
T ss_pred hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHH
Confidence 4568999999999985 57788888885 235555678999999984
No 201
>PRK09604 UGMP family protein; Validated
Probab=47.48 E-value=3.7e+02 Score=28.41 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=37.4
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcC--CCcccCCC---CCchhhHhhHHHHHHHHhC
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI---NPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~ava~GAa~~a~~l~~ 596 (714)
+++.|+|.||.+...++++.|.+.+. +.++..+. -.|.++++|++=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999873 33444433 2456777777744444444
No 202
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=47.33 E-value=46 Score=36.24 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred ceeEEEecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHH
Q psy5547 505 VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565 (714)
Q Consensus 505 ~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~ 565 (714)
..-.+.||..++.++... -..+..-++-.+++++++..+|++|+|.||+++-=-+.+.+.
T Consensus 289 ~~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 344588999999876433 345677788899999999999999999999998776666666
No 203
>PRK12440 acetate kinase; Reviewed
Probab=47.12 E-value=2.1e+02 Score=30.89 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=22.3
Q ss_pred ccceEEEEcCCCCcHH-HHHHHHHHc
Q psy5547 544 QIHDIVLVGGSTRIPK-VQKLLQDFF 568 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~-l~~~l~~~f 568 (714)
.+|.|+++||-+.... +|+.|.+.+
T Consensus 320 gvDaiVFTgGIGen~~~vr~~i~~~l 345 (397)
T PRK12440 320 SLDGIIFTGGIGENSLPIRREILKNL 345 (397)
T ss_pred CCCEEEECCccccCcHHHHHHHHhhh
Confidence 5899999999888766 999999887
No 204
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=46.04 E-value=83 Score=31.69 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC
Q psy5547 513 RARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR 556 (714)
Q Consensus 513 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 556 (714)
++..+.+....+-.....|+..+++.+..-..-..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45667777777777777777777766543223478999999875
No 205
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=44.73 E-value=42 Score=35.92 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCCcCCC----CCCCchhhHHHHHHHHHHH
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK----SINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~~i~~----~~n~deaVA~GAA~~aa~l 67 (714)
+++.|++.||+.+=|.+-+.|++.++...+.. .+++|--=|.+-|++|..-
T Consensus 284 ~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 284 QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999997644422 3566655566667777643
No 206
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=44.01 E-value=34 Score=34.68 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=33.6
Q ss_pred CCccCCCeEEEecCCcCcHHHHHHHHHHcC-------CCcCCCCCCCchhhHHHHHHHH
Q psy5547 13 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFN-------GKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 13 l~~~dId~V~LvGGssriP~vq~~l~~~f~-------~~~i~~~~n~deaVA~GAA~~a 64 (714)
=+..||+.|+|||||+-=-=|-+++.+.+. .-.+.-.--|.-|||.|-.+..
T Consensus 271 gniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 271 GNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp SSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred CCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 356789999999999975444455555542 1245556678899999987643
No 207
>PTZ00452 actin; Provisional
Probab=43.33 E-value=7.3 Score=42.05 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=33.4
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCCC-----c--CCCCCCCchhhHHHHHHHHH
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNGK-----E--LNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~~-----~--i~~~~n~deaVA~GAA~~aa 65 (714)
...|+|+||+|.+|-+.+.|.+-+... + +....+..-++=+|++++|.
T Consensus 294 ~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 294 CRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred hccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 468999999999999988887665211 1 22233455677788888874
No 208
>KOG2196|consensus
Probab=43.18 E-value=2.3e+02 Score=28.13 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhH
Q psy5547 251 SAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNP 292 (714)
Q Consensus 251 ~~e~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~ 292 (714)
..+..++.++......||+++ ...++++++.++++.+.
T Consensus 214 ~~qi~Kilnah~~sLqwl~d~----st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 214 IIQIEKILNAHMDSLQWLDDN----STQLEKKLDKIKKLKDD 251 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcc
Confidence 446677777777888999886 34678888888877653
No 209
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=43.17 E-value=1.7e+02 Score=25.17 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccchhhhHHHHHHHHHHHHHh
Q psy5547 277 EEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEEVSSMVLTKMKETAEAYL 344 (714)
Q Consensus 277 ~~~~~k~~eL~~~~~~i~~r~~~~~~rp~~~~~~~~~~~~~~~~~~~s~eev~a~~L~~l~~~~~~~~ 344 (714)
..+..|+++|.+++..-..|....... ...+++..+|++++.-.|...+......+
T Consensus 30 r~v~~kLneLd~Li~eA~~r~~~~~~~------------~~~~~~~l~P~~~i~a~l~~~~~~~~~~L 85 (109)
T PF03980_consen 30 RDVVEKLNELDKLIEEAKERKNSGERE------------KPVWRHSLTPEEDIRAHLAPYKKKEREQL 85 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHhHhccccC------------CCCCCCCCChHHHHHHHhHHHHHHHHHHH
Confidence 368999999999999988888764331 12234567888888777777666665544
No 210
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=43.06 E-value=1e+02 Score=23.36 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCee
Q psy5547 335 KMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVL 379 (714)
Q Consensus 335 ~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~ 379 (714)
.+.+.+..+...+ ....+..|+.++..+|..+.+.|+..||...
T Consensus 3 ~~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 3 HLKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred hHHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3445555555433 3367999999999999999999999998653
No 211
>PLN02377 3-ketoacyl-CoA synthase
Probab=43.00 E-value=36 Score=38.05 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=44.1
Q ss_pred chHHHHHHHcCCCccCCCeEEE-ecCCcCcHHHHHHHHHHcCCC-cC-CCCCCCchhhHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVL-VGGSTRIPKVQKLLQDFFNGK-EL-NKSINPDEAVAYGAAVQ 63 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~L-vGGssriP~vq~~l~~~f~~~-~i-~~~~n~deaVA~GAA~~ 63 (714)
+.++++|+++|++++|||.|+. ..|-...|.+-.+|.+.+|-+ .+ ...++..-|.+.-.|+.
T Consensus 178 ~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~ 242 (502)
T PLN02377 178 GALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVD 242 (502)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHH
Confidence 3578999999999999999976 333336899999999999643 22 44455555555555543
No 212
>KOG1385|consensus
Probab=42.16 E-value=76 Score=34.04 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=17.8
Q ss_pred CcEEEEEEeCCceEEEEEEE
Q psy5547 406 ERNVLIFDLGGGTFDVSILT 425 (714)
Q Consensus 406 ~~~vlVvD~GggT~Dvsv~~ 425 (714)
..++.|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 57899999999999998864
No 213
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=41.45 E-value=32 Score=35.24 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=38.3
Q ss_pred ccCCCeEEEecC-CcCcHHHHHHHHHHcC--CCcCCCCCCCchhhHHHHHH
Q psy5547 15 KAQIHDIVLVGG-STRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAV 62 (714)
Q Consensus 15 ~~dId~V~LvGG-ssriP~vq~~l~~~f~--~~~i~~~~n~deaVA~GAA~ 62 (714)
...+..|+++|| -+..|.+++.+...+. ..++...-|+.-.+|+|||+
T Consensus 228 ~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 228 RYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 346889999999 6779999999988762 24455667888999999986
No 214
>PRK06840 hypothetical protein; Validated
Probab=40.82 E-value=51 Score=34.87 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=31.7
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc---CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST---RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss---riP~vq~~l~~~f~~ 43 (714)
+.++++|+++|++++|||.|+.++-++ ..|..-..|...+|-
T Consensus 59 ~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl 103 (339)
T PRK06840 59 AAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGA 103 (339)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCC
Confidence 357899999999999999998765322 367666667777754
No 215
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=40.38 E-value=51 Score=34.66 Aligned_cols=55 Identities=29% Similarity=0.440 Sum_probs=39.5
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHcCCC---cCCCCCCC----chhhHHHHHHHHHHHhCC
Q psy5547 15 KAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINP----DEAVAYGAAVQAAILHGD 70 (714)
Q Consensus 15 ~~dId~V~LvGGssriP~vq~~l~~~f~~~---~i~~~~n~----deaVA~GAA~~aa~l~~~ 70 (714)
..+.+.|+|-|--+|+|-+.+.+++.|... ++ ..+.+ -..+|.|||+.|.-+.+.
T Consensus 258 ~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 258 VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred cCCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 457899999999999999988888777321 11 22222 144899999999877654
No 216
>PTZ00466 actin-like protein; Provisional
Probab=40.35 E-value=8.4 Score=41.68 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCCC-------cCCCCCCCchhhHHHHHHHHH
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~~-------~i~~~~n~deaVA~GAA~~aa 65 (714)
...|+|+||+|.+|-+.+.|..-+... .+....++.-++=+||+++|.
T Consensus 299 ~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 299 YSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 467999999999999998887766221 122233555677778888874
No 217
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=40.19 E-value=63 Score=35.43 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=42.7
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHHHHhC
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 69 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa~l~~ 69 (714)
.++.+=.=||.|+-.++-+.+.+.+ +.++.+.. -.|.-|+|||+.|+.-.+
T Consensus 402 ~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlGaA~lAGla~G 452 (499)
T COG0554 402 KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALGAAYLAGLAVG 452 (499)
T ss_pred CceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHHHHHHHhhhhC
Confidence 6888889999999999999999999 46775554 567899999999976543
No 218
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=40.18 E-value=48 Score=36.06 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=35.9
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
.++++|+++|++++|||.|++.|=+|+. +.-...+.+.|+.
T Consensus 280 ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~ 322 (407)
T TIGR03150 280 AMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999999976 6667778899965
No 219
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=40.04 E-value=35 Score=37.04 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=36.1
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNGK 44 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~~ 44 (714)
.++++|+++|++++|||.|.+.|=+|+. +.=...|.+.|+..
T Consensus 265 a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~ 308 (392)
T PRK09185 265 AMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG 308 (392)
T ss_pred HHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC
Confidence 5789999999999999999999999985 56567888999653
No 220
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=39.83 E-value=1.1e+02 Score=31.49 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=32.8
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcCC------CcccCCCCCchhhHhhHHHHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFNG------KELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~~------~~v~~~~~p~~ava~GAa~~a 591 (714)
+++.|+|-|+.+..+.+.+.+++.+.. .++......+.+.+.|||.++
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 457899988887777777777776632 123333445677889999876
No 221
>KOG2707|consensus
Probab=39.66 E-value=4.9e+02 Score=27.58 Aligned_cols=217 Identities=16% Similarity=0.150 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHHHhCCC---CCeEEEeeCCCCCHHHHHHHHHHHHHcCC--CeeEeeechhHHHHHhhcccccCCCCC
Q psy5547 329 SSMVLTKMKETAEAYLGKT---VSNAVITVPAYFNDSQRQATKDSGTIAGL--NVLRIINEPTAAAIAYGLDKKVGSAAG 403 (714)
Q Consensus 329 ~a~~L~~l~~~~~~~~~~~---~~~~vitVPa~~~~~~r~~l~~A~~~AGl--~~~~li~Ep~AAa~~~~~~~~~~~~~~ 403 (714)
=..-+..+.+.+....+.. .+-+.+|+=....-.=+--+.-|-..|+- ..+-=|...+|=|+...+...
T Consensus 82 Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~------ 155 (405)
T KOG2707|consen 82 HRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD------ 155 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC------
Confidence 3444666666666555544 44577888777777777777777777753 223335667777776554432
Q ss_pred CCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCccHHHHHHHHHHHHHHHHHHhhccCccccHHHHHHHHHHHHH
Q psy5547 404 SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACER 483 (714)
Q Consensus 404 ~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~ 483 (714)
...-.++.+=+-||.+-+++.+- -+.++.+...-|... |+.||.- .++.+...... .....-.++|
T Consensus 156 ~v~FPFl~lLvSGGH~llvla~~-~~~~~llg~TvDiAp-Ge~lDK~---------ar~Lgl~~~~e--~~~~~g~aie- 221 (405)
T KOG2707|consen 156 SVRFPFLALLVSGGHTLLVLANG-VGDHELLGQTVDIAP-GEALDKC---------ARRLGLLGHPE--DARSGGKAIE- 221 (405)
T ss_pred CcCCceeeEeeeCCceEEEEecc-ccceeeeecccccch-HHHHHHH---------HHHhcCCCCcc--chhhhhhHHH-
Confidence 13455666667888887776653 345666655544433 6666643 22222222111 1111112222
Q ss_pred HhHhcCCCCee--EEEEecccC---CceeEE--------------------EecHHHHH-HHHHHHHhhhhhHHHHHHHH
Q psy5547 484 AKRTLSSSTQA--SIEIDSLFE---GVDFYT--------------------SVTRARFE-ELNADLFRGTMEPVEKSLRD 537 (714)
Q Consensus 484 ~K~~ls~~~~~--~i~i~~~~~---~~~~~~--------------------~itr~~~~-~~~~~~~~~i~~~i~~~l~~ 537 (714)
.+....+. .+.++.+.. ..+|++ .....+|. .+....+..+.+....+++.
T Consensus 222 ---~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~ 298 (405)
T KOG2707|consen 222 ---HLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKS 298 (405)
T ss_pred ---HHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111 111111111 011111 01122222 22234455556666667777
Q ss_pred cCCCccccceEEEEcCCCCcHHHHHHHHHHc
Q psy5547 538 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 538 ~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f 568 (714)
+....+.+...++.||-++..||+.+|+...
T Consensus 299 ~~l~~~~~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 299 LLLQPKNVKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred hhhcccCCceEEEcCCccchHHHHHHHHHHH
Confidence 7667777889999999999999999999876
No 222
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=39.30 E-value=78 Score=33.79 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=31.6
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcCCC-c--ccCCCCCchhhHhhHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFNGK-E--LNKSINPDEAVAYGAA 588 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~-~--v~~~~~p~~ava~GAa 588 (714)
+++.|++.||.+..+.+++.|.+.+... + +....+--++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 5799999999999999999999887332 2 2222233356666665
No 223
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=39.22 E-value=72 Score=34.99 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=37.7
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~~ 44 (714)
..++++|+++|++++|||.|+..|=+|+. |.=.+.|.+.||..
T Consensus 290 ~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~~ 334 (418)
T PRK07910 290 HAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGH 334 (418)
T ss_pred HHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCCC
Confidence 35789999999999999999999998887 77788999999753
No 224
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=39.14 E-value=1.3e+02 Score=32.71 Aligned_cols=30 Identities=33% Similarity=0.719 Sum_probs=24.7
Q ss_pred CCcEEEEEEeCCceEEEEEEEEe-CCEEEEE
Q psy5547 405 GERNVLIFDLGGGTFDVSILTIE-DGIFEVK 434 (714)
Q Consensus 405 ~~~~vlVvD~GggT~Dvsv~~~~-~~~~~v~ 434 (714)
....+|++|+||..+-++.+++. ++.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 56789999999999999999997 4455444
No 225
>PTZ00004 actin-2; Provisional
Probab=39.13 E-value=7.2 Score=42.18 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHHHcCC--CccCCCeEEEecCCcCcHHHHHHHHHHcCCC-------cCCCCCCCchhhHHHHHHHHH
Q psy5547 4 VEKSLRDAKM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 4 i~~~l~~a~l--~~~dId~V~LvGGssriP~vq~~l~~~f~~~-------~i~~~~n~deaVA~GAA~~aa 65 (714)
|.+++.++.. ...=...|+|+||+|.+|-+.+.|..-+... ++....++.-++=+||+++|.
T Consensus 281 i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 281 TFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 4455555432 2223467999999999999988887665211 122334566777778777764
No 226
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=38.81 E-value=37 Score=36.10 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=36.9
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
.++++|+++|++++|||.|+..|=+|.. +.=.+.|.+.||.
T Consensus 211 ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 211 AMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE 253 (342)
T ss_pred HHHHHHHHcCCCHHHCCEEEecCCCCcCCCHHHHHHHHHHhCC
Confidence 5789999999999999999999999987 6777889999964
No 227
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=38.80 E-value=4.4e+02 Score=26.83 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=29.1
Q ss_pred HhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHHHHHHHHc
Q psy5547 524 FRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 524 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f 568 (714)
++.+...+...++. ..+..|+++||-+...+||+.+++..
T Consensus 206 ~~~l~~~~~~a~~~-----~~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 206 ADHLAKKAPRALEK-----PRAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHHHHHHHHHHHH-----HTCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----hcccccchHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 44678999999999999999998765
No 228
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=38.52 E-value=19 Score=39.66 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=36.9
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCC-------CcCCCCCCCchhhHHHHHHHHH
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNG-------KELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~-------~~i~~~~n~deaVA~GAA~~aa 65 (714)
...|+|+||+|.+|.+-+.|.+-+.. ..+....++-..+=+||+++|.
T Consensus 363 ~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 363 YSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 46899999999999988888776532 1234455777889999998885
No 229
>PRK03011 butyrate kinase; Provisional
Probab=38.15 E-value=36 Score=36.43 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=36.4
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcC---CCcCCCCCCCchhhHHHHHHH
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFN---GKELNKSINPDEAVAYGAAVQ 63 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~---~~~i~~~~n~deaVA~GAA~~ 63 (714)
++|.|+|.||-+.-+.+++.|.+.+. ...+...-+-++|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 79999999999999998888877753 234455566778999998643
No 230
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=37.84 E-value=1.1e+02 Score=31.77 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=31.6
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcCC--------CcccCCCCCchhhHhhHHHHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFNG--------KELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~~--------~~v~~~~~p~~ava~GAa~~a 591 (714)
+++.|+|-||.+..+.+.+.|++.+.. .++......+.+.++||+..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 457888877777767666766666521 123334455678889999765
No 231
>PLN03170 chalcone synthase; Provisional
Probab=37.62 E-value=52 Score=35.88 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=36.0
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc-CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss-riP~vq~~l~~~f~~ 43 (714)
+..+++|+++|++++|||.|+.+-.+. .+|.+--.|.+.+|-
T Consensus 112 ~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 154 (401)
T PLN03170 112 AAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGL 154 (401)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCc
Confidence 356899999999999999999877554 699999999999864
No 232
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=37.44 E-value=37 Score=36.69 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=36.4
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
..++++|+++|++++|||.|+..|=+|.. +.=.+.|.+.|+.
T Consensus 258 ~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~ 301 (381)
T PRK05952 258 AAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH 301 (381)
T ss_pred HHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHHHHHHHHcCC
Confidence 35789999999999999999999999987 5667788999964
No 233
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=37.43 E-value=50 Score=35.88 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=31.4
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC----cCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS----TRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs----sriP~vq~~l~~~f~~~ 44 (714)
+.++++|+++|++++|||.+++ |.. .-.|.+...|.+.+|..
T Consensus 35 ~A~~~Al~dagl~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~~ 80 (392)
T PRK06065 35 EAASKALDEAGLELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGGI 80 (392)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-eccCCcccccccHHHHHHHHcCCC
Confidence 4578999999999999999986 421 12466777888887654
No 234
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=37.18 E-value=79 Score=33.10 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=40.9
Q ss_pred chHHHHHHHcCCC----ccCCCeEEEecCCcC------------------------cHHHHHHHHHHcCCCcCCCCCCCc
Q psy5547 2 EPVEKSLRDAKMD----KAQIHDIVLVGGSTR------------------------IPKVQKLLQDFFNGKELNKSINPD 53 (714)
Q Consensus 2 ~~i~~~l~~a~l~----~~dId~V~LvGGssr------------------------iP~vq~~l~~~f~~~~i~~~~n~d 53 (714)
...+++|+++|++ +++|+.|++ |.++. .|.+-..|...++-+-...+++..
T Consensus 17 ~aa~~aL~~Ag~~~~~~~~~i~~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v~~~ 95 (332)
T cd00825 17 EAAERAIADAGLSREYQKNPIVGVVV-GTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGIHGPAYDVSAA 95 (332)
T ss_pred HHHHHHHHHcCCCccccCCCCEEEEE-EeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCCCCCccccccH
Confidence 4578999999999 999999874 43322 455567788887644445555533
Q ss_pred hhhHHHHHHHHHHH
Q psy5547 54 EAVAYGAAVQAAIL 67 (714)
Q Consensus 54 eaVA~GAA~~aa~l 67 (714)
.+-..-|..+|..+
T Consensus 96 cas~~~al~~A~~~ 109 (332)
T cd00825 96 CAGSLHALSLAADA 109 (332)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444445433
No 235
>KOG0797|consensus
Probab=36.74 E-value=14 Score=40.20 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=39.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHcCC-----C------cccC---CCCCchhhHhhHHHHHHHHhC
Q psy5547 545 IHDIVLVGGSTRIPKVQKLLQDFFNG-----K------ELNK---SINPDEAVAYGAAVQAAILHG 596 (714)
Q Consensus 545 i~~ViLvGG~s~~p~l~~~l~~~f~~-----~------~v~~---~~~p~~ava~GAa~~a~~l~~ 596 (714)
-+.|++|||+...|++.+.|++..-+ . .|+. ..||...+=+|||++|..-..
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~ 592 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFV 592 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHH
Confidence 46799999999999999999988621 1 2222 258888888999999976543
No 236
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=36.58 E-value=88 Score=23.46 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCeEEEeeCCCCCHHHHHHHHHHHHHcCCCe
Q psy5547 334 TKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNV 378 (714)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~vitVPa~~~~~~r~~l~~A~~~AGl~~ 378 (714)
+.+.+..+.++... .-.++.|+ .+..+|..+.+.|...|+..
T Consensus 2 ~~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 2 EDIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred hHHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 34555666665443 45679999 89999999999999999854
No 237
>PLN03172 chalcone synthase family protein; Provisional
Probab=35.72 E-value=46 Score=36.12 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=36.0
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc-CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss-riP~vq~~l~~~f~~ 43 (714)
+.++++|+++|++++|||.|+++..+. .+|.+--.|.+.+|-
T Consensus 108 ~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl 150 (393)
T PLN03172 108 EAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGL 150 (393)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCC
Confidence 357899999999999999999877655 699999999999864
No 238
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=35.50 E-value=19 Score=38.82 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=26.7
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcH
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIP 31 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP 31 (714)
.|+++|+++|++++|||.+++.+++++|-
T Consensus 276 ~i~~~L~~~gl~~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 276 HIVEHLAENGLTPADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCCHHHH
Confidence 57899999999999999999999999864
No 239
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=35.49 E-value=6.1e+02 Score=27.49 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=29.0
Q ss_pred HHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCC-cHHHHHHHHHHc
Q psy5547 521 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTR-IPKVQKLLQDFF 568 (714)
Q Consensus 521 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~-~p~l~~~l~~~f 568 (714)
+-+.-++...|-....... ..+|.|+++||.+. .+.+|+.+.+.+
T Consensus 300 d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 300 DAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred HHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
Confidence 3334444444444433321 46899999999996 588999998876
No 240
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=35.47 E-value=96 Score=23.60 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=27.1
Q ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHcCCCee
Q psy5547 349 SNAVITVPAYFNDSQRQATKDSGTIAGLNVL 379 (714)
Q Consensus 349 ~~~vitVPa~~~~~~r~~l~~A~~~AGl~~~ 379 (714)
..-.++.|+.+++.+|+.+...|..-|+...
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3557888999999999999999999999664
No 241
>PTZ00280 Actin-related protein 3; Provisional
Probab=35.15 E-value=22 Score=38.93 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHHHHcCC--CccCCCeEEEecCCcCcHHHHHHHHHHcC
Q psy5547 4 VEKSLRDAKM--DKAQIHDIVLVGGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 4 i~~~l~~a~l--~~~dId~V~LvGGssriP~vq~~l~~~f~ 42 (714)
|.+++.++.. ..+=.+.|+|+||+|.+|-+.+.|.+-+.
T Consensus 297 i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 297 VDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred HHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 4455555432 22234679999999999999999988873
No 242
>PLN02377 3-ketoacyl-CoA synthase
Probab=35.15 E-value=98 Score=34.71 Aligned_cols=54 Identities=6% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEE-EcCCCCcHHHHHHHHHHc
Q psy5547 515 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL-VGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 515 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~l~~~l~~~f 568 (714)
.++...++...-+...++++|+++++++.+||.|++ +.+....|.+..+|.+.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~L 218 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKY 218 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHh
Confidence 355555566666778889999999999999999887 445556899999999999
No 243
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=35.06 E-value=94 Score=31.12 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEeeCCCCCHH-HHHHHHHHHHHcCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEE
Q psy5547 333 LTKMKETAEAYLGKTVSNAVITVPAYFNDS-QRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411 (714)
Q Consensus 333 L~~l~~~~~~~~~~~~~~~vitVPa~~~~~-~r~~l~~A~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlV 411 (714)
...+.+.++..++.++ .|+++-..|... .....++.+. |+ .+|...+..+. ..+.+++
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aN----------W~Ata~~~~e~--------~~dsci~ 134 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-AN----------WVATARFLAEE--------IKDSCIL 134 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hh----------hHHHHHHHHHh--------cCCceEE
Confidence 5667777777777665 788888888764 2221222111 00 11111111111 3456899
Q ss_pred EEeCCceEEEEEEEE
Q psy5547 412 FDLGGGTFDVSILTI 426 (714)
Q Consensus 412 vD~GggT~Dvsv~~~ 426 (714)
||+|..|+|+--+.-
T Consensus 135 VD~GSTTtDIIPi~~ 149 (330)
T COG1548 135 VDMGSTTTDIIPIKD 149 (330)
T ss_pred EecCCcccceEeecc
Confidence 999999999977653
No 244
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=34.80 E-value=5.4e+02 Score=26.95 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=69.7
Q ss_pred CccchhhhHHHHHHHHHHHHHhCCCCCeEEEeeCC------------CCCHHHHHHHHHHHHHcCCCeeEeeechhHHHH
Q psy5547 323 PTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPA------------YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAI 390 (714)
Q Consensus 323 ~s~eev~a~~L~~l~~~~~~~~~~~~~~~vitVPa------------~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AAa~ 390 (714)
.+.++++..||..+.. -...+..+||+|+. .|.-. ...+ .+..|++.+.+||+=+|.|+
T Consensus 36 ~s~~~~l~~~l~~~~~-----~~~~p~~~~iavAGPV~~~~~~lTN~~W~i~-~~~l---~~~lg~~~v~liNDfeA~a~ 106 (316)
T PF02685_consen 36 PSFEDALADYLAELDA-----GGPEPDSACIAVAGPVRDGKVRLTNLPWTID-ADEL---AQRLGIPRVRLINDFEAQAY 106 (316)
T ss_dssp CHHHHHHHHHHHHTCH-----HHTCEEEEEEEESS-EETTCEE-SSSCCEEE-HHHC---HCCCT-TCEEEEEHHHHHHH
T ss_pred CCHHHHHHHHHHhccc-----CCCccceEEEEEecCccCCEEEecCCCcccc-HHHH---HHHhCCceEEEEcccchhee
Confidence 3455566666655411 11234557777772 24322 2222 23458899999999999998
Q ss_pred Hhhcccc-----cCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEEEEEEec-CCCCccH-HHHHHHHHHHHHHHH
Q psy5547 391 AYGLDKK-----VGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA-GDTHLGG-EDFDNRMVNHFVQEF 459 (714)
Q Consensus 391 ~~~~~~~-----~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~v~~~~-g~~~lGG-~~id~~l~~~l~~~~ 459 (714)
+...-.. ........+...+|+=.|.| +-++.+--.++...+..+. |+..+.- .+.+..|.+++.+++
T Consensus 107 gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 107 GLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRY 181 (316)
T ss_dssp HHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHC
T ss_pred ccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhc
Confidence 7632111 00111124677899888866 6666665556555565554 4444443 456677888877766
No 245
>PLN03173 chalcone synthase; Provisional
Probab=34.42 E-value=1.5e+02 Score=32.16 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=39.7
Q ss_pred HHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC-CcHHHHHHHHHHc
Q psy5547 521 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFF 568 (714)
Q Consensus 521 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f 568 (714)
+...+-..+.++++|+++++++.+|+.|+++..+. ..|.+.-.|.+.+
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~L 148 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLL 148 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHh
Confidence 34445556788999999999999999998887555 5899999999999
No 246
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=34.35 E-value=58 Score=31.81 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.5
Q ss_pred CCcEEEEEEeCCceEEEEEEEEeCC
Q psy5547 405 GERNVLIFDLGGGTFDVSILTIEDG 429 (714)
Q Consensus 405 ~~~~vlVvD~GggT~Dvsv~~~~~~ 429 (714)
....+|++|+||.++-++.+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 5678999999999999999999865
No 247
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=34.04 E-value=64 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=29.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcC--CCcccCCCC---CchhhHhh
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSIN---PDEAVAYG 586 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~~---p~~ava~G 586 (714)
.+..|+|+||.+...++++.|.+.+. +.++..+.. .|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 36789999999999999999999752 334443321 23455555
No 248
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=33.88 E-value=55 Score=35.43 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=24.6
Q ss_pred cccceEEEEcCCC-CcHHHHHHHHHHcC
Q psy5547 543 AQIHDIVLVGGST-RIPKVQKLLQDFFN 569 (714)
Q Consensus 543 ~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 569 (714)
..+|.|+++||.+ +++.|++.|.+.+.
T Consensus 322 g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 322 GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 4689999999999 99999999998873
No 249
>PLN03173 chalcone synthase; Provisional
Probab=33.74 E-value=75 Score=34.50 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=35.6
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc-CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss-riP~vq~~l~~~f~~ 43 (714)
+.++++|+++|++++|||.|+.+.-+. .+|.+--.|.+.+|-
T Consensus 108 ~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl 150 (391)
T PLN03173 108 EAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGL 150 (391)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCC
Confidence 357899999999999999999887554 689999999998863
No 250
>PLN03170 chalcone synthase; Provisional
Probab=33.13 E-value=1.4e+02 Score=32.63 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC-CcHHHHHHHHHHcC
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFN 569 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 569 (714)
.+...+...+-..+.++++|+++++++.+|+.|+++-.+. .+|.+.-+|.+.++
T Consensus 99 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3333445555567888999999999999999998777555 69999999999993
No 251
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=32.94 E-value=48 Score=36.19 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=35.1
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcH--HHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIP--KVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP--~vq~~l~~~f~~ 43 (714)
.++.+|+++|++++|||.|++.|-+|+.- .=.+.|...|+.
T Consensus 284 a~~~al~~Agi~~~did~i~~hgtgt~~~D~~E~~al~~~f~~ 326 (421)
T cd00833 284 LIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGG 326 (421)
T ss_pred HHHHHHHHhCCCHHHCcEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999999999874 445788888864
No 252
>PLN02902 pantothenate kinase
Probab=32.93 E-value=2.8e+02 Score=33.13 Aligned_cols=51 Identities=12% Similarity=-0.059 Sum_probs=31.7
Q ss_pred ccccceEEEEcCCCCc-HHHHHHHHHH---c--CCCcccCCCCCchhhHhhHHHHHH
Q psy5547 542 KAQIHDIVLVGGSTRI-PKVQKLLQDF---F--NGKELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 542 ~~~i~~ViLvGG~s~~-p~l~~~l~~~---f--~~~~v~~~~~p~~ava~GAa~~a~ 592 (714)
..+++.|+++|.+-|- |...+.|... + +..+.....+-...-|.||.+...
T Consensus 344 ~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 344 RFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred HcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 3567899999998654 3333434333 2 334555666666778888876543
No 253
>PLN03172 chalcone synthase family protein; Provisional
Probab=32.87 E-value=1.5e+02 Score=32.18 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC-CcHHHHHHHHHHc
Q psy5547 515 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFF 568 (714)
Q Consensus 515 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f 568 (714)
......+...+-..+.++++|+++++++.+|+.|+++-.+. .+|.+.-.|.+.+
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~L 148 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLL 148 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHh
Confidence 33334444555567788999999999999999998777655 6999999999999
No 254
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=32.59 E-value=1.3e+02 Score=31.38 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=42.3
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHcCCCeeEee---echhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEE
Q psy5547 350 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRII---NEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI 426 (714)
Q Consensus 350 ~~vitVPa~~~~~~r~~l~~A~~~AGl~~~~li---~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 426 (714)
.++||=-+--..++|..+...-..||==++... .|+.-|.-..+.. ....++...++=+|+||||+..+++.-
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~----t~Seqr~t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQ----TLSEQRLTRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCcccc----chhhhhceEEEEEeccCCccceeeecc
Confidence 367776666667777777666666663222111 2333333322221 111224567888999999999998854
No 255
>PRK06158 thiolase; Provisional
Probab=32.42 E-value=85 Score=33.98 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=28.7
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~~ 43 (714)
+.+.++|+++|++++|||.|+........|. ..|.+.+|-
T Consensus 34 eA~~~Al~dAgl~~~dID~iv~~~~~~~~~~--~~la~~lGl 73 (384)
T PRK06158 34 QAAHRALADAGLTMADVDGLFTASPDDALWG--LSVAEYLGI 73 (384)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEecCCCCCcH--HHHHHHcCC
Confidence 4578999999999999999986443345554 246666653
No 256
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.90 E-value=82 Score=33.01 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=33.7
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~~~ 44 (714)
+.++++|+++|+++++||.|+....+ ...|..-..|.+.+|-.
T Consensus 59 ~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg~~ 103 (325)
T PRK12879 59 KAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGIP 103 (325)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhCCC
Confidence 45789999999999999998865432 35788888888888643
No 257
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=31.59 E-value=1.3e+02 Score=32.17 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=36.7
Q ss_pred CCeEEEecCCcCcHHHHHHHHHHcCCCcCC----CCCCCchhhHHHHHHHHHHH
Q psy5547 18 IHDIVLVGGSTRIPKVQKLLQDFFNGKELN----KSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 18 Id~V~LvGGssriP~vq~~l~~~f~~~~i~----~~~n~deaVA~GAA~~aa~l 67 (714)
.+.|++.||+.+-|.+-+.|++.++ .++. ..+++|--=|+.-|++|..-
T Consensus 287 ~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 287 PDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred CCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 5689999999999999999999985 3332 22666755566677777543
No 258
>PRK09557 fructokinase; Reviewed
Probab=31.06 E-value=91 Score=32.33 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=30.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcC--------CCcccCCCCCchhhHhhHHHHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFN--------GKELNKSINPDEAVAYGAAVQA 591 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~--------~~~v~~~~~p~~ava~GAa~~a 591 (714)
+++.|+|-||.++.+.+...|++.+. ..++....-.+.+.++||++..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 45788888888877766666665541 1123333344567888888653
No 259
>PLN03168 chalcone synthase; Provisional
Probab=30.98 E-value=55 Score=35.51 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=34.6
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC-cCcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS-TRIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs-sriP~vq~~l~~~f~~ 43 (714)
+..+++|+++|++++|||.|+.+-.+ -.+|.+--.|.+.+|-
T Consensus 107 ~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 149 (389)
T PLN03168 107 EAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGL 149 (389)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCc
Confidence 35689999999999999999977433 3589999999999863
No 260
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=30.90 E-value=1.8e+02 Score=31.77 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHH
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 560 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l 560 (714)
++++-+-+++.+-.++.+.+.++++.+.+|..++++|-++-.-.+
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLl 99 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLL 99 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHH
Confidence 445555666777888889999999999999999999966544443
No 261
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=30.37 E-value=6.5e+02 Score=26.29 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=31.8
Q ss_pred ccceEEEEcCCCCcHHHHHHHHHHcC--CCcccCCC---CCchhhHhhHH
Q psy5547 544 QIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSI---NPDEAVAYGAA 588 (714)
Q Consensus 544 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~ava~GAa 588 (714)
.++.|+|.||.+...++++.|.+.+. +..+..+. -.|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 46789999999999999999999872 22333332 23456666655
No 262
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.29 E-value=1.1e+02 Score=32.15 Aligned_cols=43 Identities=28% Similarity=0.430 Sum_probs=33.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc--CcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST--RIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss--riP~vq~~l~~~f~~~ 44 (714)
+..+++|+++|++++|||.|+...++. .+|..-..|...+|-.
T Consensus 58 ~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~p~~a~~v~~~lgl~ 102 (329)
T PRK07204 58 EAAKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLGLQ 102 (329)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCCccHHHHHHHHhCCC
Confidence 356889999999999999987664332 3788888888888643
No 263
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=30.15 E-value=91 Score=32.75 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=43.6
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHHH
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~aa 65 (714)
+..+++|++||++++|||-|++.-=+ --+|..--.|.+.+|-.. ..--|-.+|..-.+||-
T Consensus 58 ~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~~---~~afDl~aaCsgf~yaL 120 (323)
T COG0332 58 EAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGG---APAFDLQAACSGFLYAL 120 (323)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhCCCC---cceeechhhhHHHHHHH
Confidence 34689999999999999999987665 446999999999996443 23344444444445543
No 264
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.13 E-value=62 Score=34.59 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=35.6
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~~~ 44 (714)
+..+++|+++|++++|||.|+++.-+ -.+|..--.|.+.+|-.
T Consensus 66 ~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~~ 110 (353)
T PRK12880 66 HAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLS 110 (353)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999965555 36999999999998643
No 265
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=30.03 E-value=1.1e+02 Score=32.03 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=32.3
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~~~ 44 (714)
+.++++|+++|++++|||.|+....+ ...|..-..|...+|-.
T Consensus 57 ~A~~~al~~agl~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lGl~ 101 (318)
T TIGR00747 57 EAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLGIK 101 (318)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCCChHHHHHHHHhCCC
Confidence 45789999999999999998864432 24676767788888643
No 266
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=29.63 E-value=48 Score=28.63 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=34.8
Q ss_pred chHHHHHHHcCCCccCCCeE--EEecCCcCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDI--VLVGGSTRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V--~LvGGssriP~vq~~l~~~f~~~ 44 (714)
+-|+.+|+.+|.+++||-.+ .|+.-....+.+.+...++|++.
T Consensus 40 ~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~~ 84 (111)
T cd02198 40 QNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKEP 84 (111)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCCC
Confidence 45789999999999998665 46665578999999999999743
No 267
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=29.55 E-value=67 Score=35.05 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=36.2
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNGK 44 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~~ 44 (714)
.++++|++++++++||+.|+..|=+|.. +.=.+.|.+.|+..
T Consensus 280 ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~fg~~ 323 (405)
T PRK09116 280 AMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGAR 323 (405)
T ss_pred HHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHHHHHhCCC
Confidence 5789999999999999999999988865 67778899999753
No 268
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=28.88 E-value=89 Score=30.04 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=36.8
Q ss_pred CCCccCCCeEEEecCCcCcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHH
Q psy5547 12 KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62 (714)
Q Consensus 12 ~l~~~dId~V~LvGGssriP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~ 62 (714)
-+...-|..+.|+||+|.-|-+.+..++.| +-.+...-.|--.--+|-|.
T Consensus 221 hie~~~i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 221 HIEGQGITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred HhccCCCcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhh
Confidence 445556788999999999999999999999 55555555555555555443
No 269
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=28.81 E-value=98 Score=32.32 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=31.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc---CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST---RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss---riP~vq~~l~~~f~~ 43 (714)
+.++++|+++|++++|||.|++ |.++ ..|..-..|...+|-
T Consensus 54 ~a~~~aL~~ag~~~~~Id~li~-~~~~~~~~~~~~~~~i~~~lg~ 97 (324)
T cd00827 54 EAARRALERAGIDPDDIGLLIV-ATESPIDKGKSAATYLAELLGL 97 (324)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-EcCCCCCCCccHHHHHHHHcCC
Confidence 3578999999999999999886 3332 256677778888864
No 270
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.53 E-value=33 Score=37.58 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCCccccceEEEEcC-CCCcH--HHHHHHHH-Hc--CCCcccCCCCCch
Q psy5547 539 KMDKAQIHDIVLVGG-STRIP--KVQKLLQD-FF--NGKELNKSINPDE 581 (714)
Q Consensus 539 ~~~~~~i~~ViLvGG-~s~~p--~l~~~l~~-~f--~~~~v~~~~~p~~ 581 (714)
+.+-..++.|+-+|| .++.| .....++. .| .+..+..+.+|+.
T Consensus 384 GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~~~~~~~L~p~~~~~ 432 (463)
T TIGR01319 384 GKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFDDADARHLKPQEFEY 432 (463)
T ss_pred CCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhccCCCccccCCcCCeE
Confidence 444556789999999 67887 77777755 34 2233445555554
No 271
>PLN03168 chalcone synthase; Provisional
Probab=28.43 E-value=1.9e+02 Score=31.33 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCC-CcHHHHHHHHHHc
Q psy5547 515 RFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFF 568 (714)
Q Consensus 515 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f 568 (714)
..+-..+...+-..+..+++|+++++++.+|++||++-.+. .+|.+.-+|.+.+
T Consensus 93 r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~L 147 (389)
T PLN03168 93 RHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLL 147 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHh
Confidence 34444445555567888999999999999999998764433 5799999999999
No 272
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.38 E-value=1e+02 Score=32.59 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.8
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~~~ 44 (714)
+.++++|+++|+.++|||.|+....+ ...|..-..|...+|-.
T Consensus 67 ~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl~ 111 (338)
T PRK09258 67 AAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLP 111 (338)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcCCC
Confidence 45789999999999999998865432 45788888888888643
No 273
>PLN02192 3-ketoacyl-CoA synthase
Probab=28.20 E-value=99 Score=34.71 Aligned_cols=59 Identities=10% Similarity=0.179 Sum_probs=40.7
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCc--CcHHHHHHHHHHcCCC-c-CCCCCCCchhhHHHHHH
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGST--RIPKVQKLLQDFFNGK-E-LNKSINPDEAVAYGAAV 62 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGss--riP~vq~~l~~~f~~~-~-i~~~~n~deaVA~GAA~ 62 (714)
.++++|+++|++++|||.|+.. .|+ -.|.+-.+|.+.+|-. . ...+++..-|.+.-.|+
T Consensus 183 Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aL 245 (511)
T PLN02192 183 AIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISI 245 (511)
T ss_pred HHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCCCCCceEEEcccchhhhHHHHH
Confidence 5789999999999999988765 444 4799999999999643 2 23344433444333333
No 274
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=28.18 E-value=97 Score=35.25 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=40.4
Q ss_pred ccCCCeEEEecCCcCcHHHHHHHHHHcCC-------------------CcCCCCCCCchhhHHHHHHHHHHH
Q psy5547 15 KAQIHDIVLVGGSTRIPKVQKLLQDFFNG-------------------KELNKSINPDEAVAYGAAVQAAIL 67 (714)
Q Consensus 15 ~~dId~V~LvGGssriP~vq~~l~~~f~~-------------------~~i~~~~n~deaVA~GAA~~aa~l 67 (714)
.-+-|-++|.|-.||+|.||.......+- .+-.+--||-..+|.||-+++-.+
T Consensus 776 ~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 776 HYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred hhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 34567899999999999999998876421 122344589999999999888655
No 275
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.09 E-value=1.1e+02 Score=32.95 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=32.0
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFNGK 44 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~~~ 44 (714)
+.++++|+++|++++|||.|+....+ ..+|..-..|...+|-.
T Consensus 101 ~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl~ 145 (372)
T PRK07515 101 AAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIE 145 (372)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCCC
Confidence 35688999999999999988754332 35787777788888643
No 276
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=27.76 E-value=6.6e+02 Score=25.50 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhc
Q psy5547 277 EEFEDKQKELEAICNPIITKLYQA 300 (714)
Q Consensus 277 ~~~~~k~~eL~~~~~~i~~r~~~~ 300 (714)
.+++.|+..++...+.++..+.++
T Consensus 157 ~el~~K~~~~k~~~e~Ll~~LgeF 180 (268)
T PF11802_consen 157 QELKTKIEKIKEYKEKLLSFLGEF 180 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777677777666664
No 277
>PRK09698 D-allose kinase; Provisional
Probab=27.72 E-value=1.8e+02 Score=30.03 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=31.6
Q ss_pred ccceEEEEcCCCCc-----HHHHHHHHHHcC------CCcccCCCCCchhhHhhHHHHHH
Q psy5547 544 QIHDIVLVGGSTRI-----PKVQKLLQDFFN------GKELNKSINPDEAVAYGAAVQAA 592 (714)
Q Consensus 544 ~i~~ViLvGG~s~~-----p~l~~~l~~~f~------~~~v~~~~~p~~ava~GAa~~a~ 592 (714)
+++.|+|-||.+.. +.+++.+++... ..++......+.+.+.|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 45788888887764 345666665541 12344455567788999998764
No 278
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=27.40 E-value=92 Score=32.45 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=32.1
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc--CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST--RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss--riP~vq~~l~~~f~~ 43 (714)
+.++++|+++|+++++||.|+....+. ..|..-..|...+|-
T Consensus 56 ~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg~ 99 (320)
T cd00830 56 EAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLGA 99 (320)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCC
Confidence 357899999999999999997644321 257777888888864
No 279
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.80 E-value=6.8e+02 Score=25.37 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=48.4
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCCeeEeeechhHHHHHhhcccccCCCCCCCCcEEEEEEeCCceEEEEEEEEeCCEE
Q psy5547 355 VPAYFNDSQRQATKDSGTI---AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIF 431 (714)
Q Consensus 355 VPa~~~~~~r~~l~~A~~~---AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~ 431 (714)
+|-+|+. |+.|+.. ++-. ..+++.-.||++....+.. ....+|+|+|-|++-.+++.- +.+
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dpa--------a~palvVd~GngHttaalvde--dRI 249 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPA--------ADPALVVDYGNGHTTAALVDE--DRI 249 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCcc--------cCceEEEEccCCceEEEEecC--CeE
Confidence 5666653 4444333 3443 4566666677776665533 347899999999998888753 222
Q ss_pred EEEEecCCCCccHHHHHHHHHHHHH
Q psy5547 432 EVKSTAGDTHLGGEDFDNRMVNHFV 456 (714)
Q Consensus 432 ~v~~~~g~~~lGG~~id~~l~~~l~ 456 (714)
.-+...-...+.-+.|..-|.++..
T Consensus 250 ~gv~EHHT~~Lspekled~I~rf~~ 274 (342)
T COG4012 250 VGVYEHHTIRLSPEKLEDQIIRFVE 274 (342)
T ss_pred EEEeecccccCCHHHHHHHHHHHHh
Confidence 2222222345555555444444433
No 280
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=26.68 E-value=1.4e+02 Score=32.36 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=30.4
Q ss_pred chHHHHHHHcCCCccCCCeEEEe----cCCcCcHHHHHHHHHHcCCC--cCCCCCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLV----GGSTRIPKVQKLLQDFFNGK--ELNKSIN 51 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~Lv----GGssriP~vq~~l~~~f~~~--~i~~~~n 51 (714)
+.++.+|+++|++++|||.|++- +|....| -..+....|-. .+..++|
T Consensus 32 ~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~--a~~~~~~~Gl~~~~p~~~v~ 85 (388)
T PRK06366 32 AAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNP--AGQAAYHAGLPFGVTKYTVN 85 (388)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcH--HHHHHHHCCCCCCCcceeee
Confidence 35789999999999999999852 3322233 23355556432 2445565
No 281
>PLN02854 3-ketoacyl-CoA synthase
Probab=26.63 E-value=95 Score=34.95 Aligned_cols=41 Identities=5% Similarity=0.182 Sum_probs=33.5
Q ss_pred hHHHHHHHcCCCccCCCeEEE-ecCCcCcHHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVL-VGGSTRIPKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~L-vGGssriP~vq~~l~~~f~~ 43 (714)
.++++|+++|++++|||.|+. ..|-..+|.+-.+|.+.+|-
T Consensus 195 ~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGl 236 (521)
T PLN02854 195 ALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKL 236 (521)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCC
Confidence 478999999999999999986 23333579999999999964
No 282
>PLN00415 3-ketoacyl-CoA synthase
Probab=26.33 E-value=1.1e+02 Score=33.71 Aligned_cols=61 Identities=7% Similarity=0.145 Sum_probs=41.4
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCc-CcHHHHHHHHHHcCCC-cC-CCCCCCchhhHHHHHHH
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGST-RIPKVQKLLQDFFNGK-EL-NKSINPDEAVAYGAAVQ 63 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGss-riP~vq~~l~~~f~~~-~i-~~~~n~deaVA~GAA~~ 63 (714)
.++++|+++|++++|||.|+..+..- ..|.+-.+|.+.+|-. .+ ...++..-|.+.-.++.
T Consensus 141 A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL~ 204 (466)
T PLN00415 141 ALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVD 204 (466)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCCCCceEEEeccccchHHHHHHH
Confidence 46788999999999999988553332 4899999999998533 22 33444444554444443
No 283
>PLN00197 beta-amylase; Provisional
Probab=25.90 E-value=1.5e+02 Score=33.24 Aligned_cols=56 Identities=18% Similarity=0.313 Sum_probs=44.9
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhCCCCCeEEEe--------eCCC------C-----------CHHHHHHHHHHHHHcC
Q psy5547 321 PGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVIT--------VPAY------F-----------NDSQRQATKDSGTIAG 375 (714)
Q Consensus 321 ~~~s~eev~a~~L~~l~~~~~~~~~~~~~~~vit--------VPa~------~-----------~~~~r~~l~~A~~~AG 375 (714)
.|+||.++..+|++..++.-..+++..|..+-|+ .|+| | +...+..|+.+|..+|
T Consensus 240 ~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G 319 (573)
T PLN00197 240 KGRTPVQCYADFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAG 319 (573)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhC
Confidence 5899999999999999999999998878777653 5665 4 3355777888888887
Q ss_pred C
Q psy5547 376 L 376 (714)
Q Consensus 376 l 376 (714)
-
T Consensus 320 ~ 320 (573)
T PLN00197 320 K 320 (573)
T ss_pred C
Confidence 3
No 284
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=25.81 E-value=3.6e+02 Score=22.37 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHHHHHH--HHHHHHHHHHHhhHHHHHHhhhccccchhhhccCCHHHHHHHHHHHHHHHHHhhcC
Q psy5547 200 EDIERMVNDAEKYKAE--DEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWLDSN 271 (714)
Q Consensus 200 eei~~~~~~~~~~~~~--D~~~~~~~~arN~LEs~iy~~r~~L~~~~~~~~~s~~e~~~l~~~l~e~~~WL~~~ 271 (714)
+++..++..++.+... +.......+++..+++.+-.+|+.+.+ ....-+++..+....+.++..++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~V~e~ 72 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED------AADQAREQAREAAEQTEDYVREN 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455555555544432 233344556666666666666666543 12223444444455555554433
No 285
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=25.67 E-value=1.4e+02 Score=32.33 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=19.4
Q ss_pred chHHHHHHHcCCCccCCCeEEE
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVL 23 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~L 23 (714)
+.++.+|+++|++++|||.|++
T Consensus 32 ~a~~~al~dagl~~~~ID~vv~ 53 (382)
T PRK07801 32 HVLKGLVDRTGIDPAAVDDVIF 53 (382)
T ss_pred HHHHHHHHHcCCCHHHcCEEEE
Confidence 3578899999999999999985
No 286
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=25.50 E-value=48 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=22.2
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcHHH
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 33 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP~v 33 (714)
.+.++|+++|++++|||-+++.==-+-.+..
T Consensus 27 A~~~al~~ag~~~~did~~Ei~EaFA~~~l~ 57 (123)
T PF02803_consen 27 AARKALERAGLTPDDIDVIEINEAFAAQVLA 57 (123)
T ss_dssp HHHHHHHHHT--GGGESEEEE--SBHHHHHH
T ss_pred HHHHHHHHhCCCccccchhhccchhhhHHHH
Confidence 4688999999999999999998776655544
No 287
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=25.35 E-value=1.4e+02 Score=32.24 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=28.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEec---CCcCcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVG---GSTRIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvG---GssriP~vq~~l~~~f~~ 43 (714)
+.++++|+++|++++|||.|++ | +....|..-..+...+|-
T Consensus 28 ~A~~~AL~dAgl~~~dID~vi~-~~~~~~~~~~~~a~~v~~~lGl 71 (386)
T cd00751 28 AVIKALLERAGLDPEEVDDVIM-GNVLQAGEGQNPARQAALLAGL 71 (386)
T ss_pred HHHHHHHHhcCCCHHHCCEEEE-EeccCCCCCChHHHHHHHHcCC
Confidence 3578899999999999999985 3 111235554556676753
No 288
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=25.11 E-value=80 Score=34.58 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=34.3
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
.++++|+++|++++|||.|...|-+|+. ..=.+.|.+.|+.
T Consensus 284 a~~~al~~Agl~~~dId~i~~h~tgt~~~d~~E~~al~~~~~~ 326 (424)
T smart00825 284 LIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALAAVFGQ 326 (424)
T ss_pred HHHHHHHHhCCCHHHccEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999999985 4445678888853
No 289
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.99 E-value=2.9e+02 Score=21.23 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=26.2
Q ss_pred HHHhhHHHHHHhhhccccchhhhccCCHHHHHHHHHHHHHHHH
Q psy5547 224 TAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIK 266 (714)
Q Consensus 224 ~arN~LEs~iy~~r~~L~~~~~~~~~s~~e~~~l~~~l~e~~~ 266 (714)
.....++..+-.+..+|.++.|....+++-.+.-...+.++..
T Consensus 11 Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~ 53 (66)
T PF10458_consen 11 KELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEE 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHH
Confidence 3444566666677777777777777776666655555544443
No 290
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=24.82 E-value=1.9e+02 Score=29.33 Aligned_cols=55 Identities=31% Similarity=0.402 Sum_probs=34.8
Q ss_pred cccceEEEEcCCCCcHHH----HHHHHHHcCC----Ccc--cCCCCCchhhHhhHHHHHHHHhCC
Q psy5547 543 AQIHDIVLVGGSTRIPKV----QKLLQDFFNG----KEL--NKSINPDEAVAYGAAVQAAILHGD 597 (714)
Q Consensus 543 ~~i~~ViLvGG~s~~p~l----~~~l~~~f~~----~~v--~~~~~p~~ava~GAa~~a~~l~~~ 597 (714)
...+.|+|.|-++++|-+ ++.|++.|.. ..+ ....--.--.|.|||+.|..+.|.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 345889999999998665 5555555521 122 112222234678999999888775
No 291
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=24.59 E-value=72 Score=35.01 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=34.6
Q ss_pred hHHHHHHH-cCCCccCCCeEEEecCCcCcH--HHHHHHHHHcCC
Q psy5547 3 PVEKSLRD-AKMDKAQIHDIVLVGGSTRIP--KVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~-a~l~~~dId~V~LvGGssriP--~vq~~l~~~f~~ 43 (714)
.++++|++ ||++++|||.|+..|=+|.+- .=.+.|.+.|++
T Consensus 288 ai~~Al~~~Agi~~~dId~ie~hgtgt~~~D~~E~~al~~~~~~ 331 (421)
T PTZ00050 288 CMENALKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGD 331 (421)
T ss_pred HHHHHHHhccCCChhhCCEEECCCccCCCCCHHHHHHHHHHhcc
Confidence 47899999 999999999999999888664 334678899965
No 292
>PLN03169 chalcone synthase family protein; Provisional
Probab=24.31 E-value=84 Score=34.10 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred CchHHHHHHHcCCCccCCCeEEEecCCc---CcHHHHHHHHHHcCCCcCCCCCCCchhhHHHHHHHH
Q psy5547 1 MEPVEKSLRDAKMDKAQIHDIVLVGGST---RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 64 (714)
Q Consensus 1 i~~i~~~l~~a~l~~~dId~V~LvGGss---riP~vq~~l~~~f~~~~i~~~~n~deaVA~GAA~~a 64 (714)
++..+++|+++|++++|||.|+.+ ++ .+|..--.|.+.+ +-......-.|-..+..+.++|
T Consensus 111 ~~Aa~~aL~~ag~~~~dId~lI~~--t~t~~~~P~~a~~l~~~L-Gl~~~~~~~~d~~~gC~g~~~a 174 (391)
T PLN03169 111 VEASLACIKEWGRPVSDITHLVYV--SSSEARLPGGDLYLAKQL-GLSPDVQRVMLYFLGCSGGVAG 174 (391)
T ss_pred HHHHHHHHHHhCCCHHHCCEEEEE--CcCCCCCCcHHHHHHHHh-CcCCcceeeecccChhHHHHHH
No 293
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=23.96 E-value=79 Score=34.41 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=35.3
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
.++++|+++|++++|||.|+..|=+|+. +.-.+.|+..|+.
T Consensus 279 a~~~Al~~Agi~~~dId~i~~hgtgt~~~D~~E~~ai~~~~~~ 321 (407)
T cd00828 279 AIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGA 321 (407)
T ss_pred HHHHHHHHcCCCHHHcCEEecccccCccccHHHHHHHHHHHhc
Confidence 5789999999999999999999999987 5556788888864
No 294
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=23.64 E-value=1.1e+02 Score=33.22 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.9
Q ss_pred ccceEEEEcCCC-CcHHHHHHHHHHcC
Q psy5547 544 QIHDIVLVGGST-RIPKVQKLLQDFFN 569 (714)
Q Consensus 544 ~i~~ViLvGG~s-~~p~l~~~l~~~f~ 569 (714)
.+|.|+++||-+ +++.||+.|.+.+.
T Consensus 327 ~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 327 NLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred CCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 489999999999 99999999999873
No 295
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=23.50 E-value=1.5e+02 Score=32.69 Aligned_cols=51 Identities=6% Similarity=0.127 Sum_probs=31.8
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC---cCcHHHHHHHHHHcCCC--cCCCCCCCc
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS---TRIPKVQKLLQDFFNGK--ELNKSINPD 53 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs---sriP~vq~~l~~~f~~~--~i~~~~n~d 53 (714)
+.++.+|+++|++++|||.|++ |-+ ...+.+-..+...+|-. .+..++|..
T Consensus 33 ~A~~~Al~dAgl~~~dID~vi~-g~~~~~~~~~~~a~~v~~~lGl~~~~p~~~v~~~ 88 (426)
T PRK08170 33 AAGRALLNRQPFAPDDLDEVIL-GCAMPSPDEANIARVVALRLGCGEKVPAWTVQRN 88 (426)
T ss_pred HHHHHHHHHcCCCHHHCCEEEE-EeccCCCCcChHHHHHHHHhCcCCCceeeeccch
Confidence 3578899999999999999985 322 12334444566666532 234455543
No 296
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.42 E-value=1.6e+02 Score=31.71 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.6
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCC--cCcHHHHHHHHHHcC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGS--TRIPKVQKLLQDFFN 42 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGs--sriP~vq~~l~~~f~ 42 (714)
+.++++|+++|++++|||.++..-.+ ..+|..-..|...+|
T Consensus 69 ~A~~~aL~~agi~~~dId~li~~s~~~~~~~p~~a~~v~~~Lg 111 (378)
T PRK06816 69 EAIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVHGELG 111 (378)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEECCCCcCChHHHHHHHhhCC
Confidence 35788999999999999998775432 346876566777775
No 297
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.42 E-value=59 Score=34.23 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=30.7
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~ 42 (714)
.++++|+++|++++|||.+++..++.++ .+.+.+.++
T Consensus 235 ~i~~~L~~~gl~~~did~~~~H~~~~~~---~~~i~~~l~ 271 (329)
T PRK07204 235 FIDKLLMDAGYTLADIDLIVPHQASGPA---MRLIRKKLG 271 (329)
T ss_pred HHHHHHHHcCCCHHHCCEEEeCCCCHHH---HHHHHHHcC
Confidence 5789999999999999999999998865 346666664
No 298
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=23.30 E-value=1.1e+02 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=22.1
Q ss_pred HHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcC
Q psy5547 8 LRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 8 l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~ 42 (714)
|+++|++++|||.|++.=.+- +.++. +.+.++
T Consensus 1 L~~~g~~~~did~~i~hq~~~--~~~~~-~~~~lg 32 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASK--KILDS-IAKRLG 32 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSH--HHHHH-HHHHHT
T ss_pred CccccCCHHHCCEEEeCCCCH--HHHHH-HHHHcC
Confidence 789999999999999998874 44444 666664
No 299
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=23.14 E-value=87 Score=35.60 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
.|+++|+++|++++|||.|...|=+|.. +.=.+.|.+.|+.
T Consensus 410 am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~Ai~~~Fg~ 452 (540)
T PLN02787 410 CIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQ 452 (540)
T ss_pred HHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHHHHHHhCC
Confidence 5889999999999999999999999887 4445678888964
No 300
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.08 E-value=89 Score=32.74 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.1
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcHHHHHHHHHHcC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP~vq~~l~~~f~ 42 (714)
.++++|+++|++++|||.+++..++ +.+.+.+.+.++
T Consensus 230 ~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg 266 (325)
T PRK12879 230 GARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLG 266 (325)
T ss_pred HHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcC
Confidence 4789999999999999999999887 344566777764
No 301
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=22.94 E-value=1.5e+02 Score=32.25 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=28.0
Q ss_pred chHHHHHHHcCCCccCCCeEEEe---cCCcCcHHHHHHHHHHcC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLV---GGSTRIPKVQKLLQDFFN 42 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~Lv---GGssriP~vq~~l~~~f~ 42 (714)
+.++++|+++|++++|||.|++- ++. ..|.+-..+....|
T Consensus 32 ~A~~~AL~~agl~~~dID~vv~g~~~~~~-~~~~~a~~va~~~G 74 (404)
T PRK06205 32 TVIRALVERTGIDPARIDDVIFGQGYPNG-EAPAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEeccCCC-CCChHHHHHHHHcC
Confidence 35789999999999999998742 221 23555556766665
No 302
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=1.2e+03 Score=26.48 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=53.7
Q ss_pred EecHHHHHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEEEcCCCCcHHHH-HHHHHHcCCCccc-CCCCCchhhHhhH
Q psy5547 510 SVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ-KLLQDFFNGKELN-KSINPDEAVAYGA 587 (714)
Q Consensus 510 ~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~-~~l~~~f~~~~v~-~~~~p~~ava~GA 587 (714)
+....++...++..+++++..+-..+.... ..+.+.+.||.+..-..- ..+.+-+ ...+. .|--.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 344455666667777777666655554332 157899999998776666 5555555 33443 3444566799999
Q ss_pred HHHHHHHhCC
Q psy5547 588 AVQAAILHGD 597 (714)
Q Consensus 588 a~~a~~l~~~ 597 (714)
|+++....+.
T Consensus 330 Al~~~~~~~~ 339 (555)
T COG2192 330 ALAVKRELGG 339 (555)
T ss_pred HHHHHHHhcC
Confidence 9998866543
No 303
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=21.97 E-value=1.1e+02 Score=33.17 Aligned_cols=42 Identities=12% Similarity=0.160 Sum_probs=36.3
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNGK 44 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~~ 44 (714)
.|+++|+++|++++|||.|...|=+|.. +.-.+.|++.|+..
T Consensus 275 a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~~~fg~~ 318 (399)
T cd00832 275 AIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGPR 318 (399)
T ss_pred HHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHHHHhCCC
Confidence 5789999999999999999999988876 66678899999653
No 304
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=21.61 E-value=1.4e+02 Score=32.45 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.4
Q ss_pred chHHHHHHHcCCCccCCCeEEE
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVL 23 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~L 23 (714)
+.++.+|+++|++++|||.|++
T Consensus 37 ~a~~~aL~~Agi~~~dID~vi~ 58 (397)
T PRK06954 37 AAIAAAVERAGLKPEQIDEVVM 58 (397)
T ss_pred HHHHHHHHHcCCCHHHcCEEEE
Confidence 3578999999999999999885
No 305
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.53 E-value=1.3e+02 Score=32.79 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=33.6
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFN 42 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~ 42 (714)
.|+++|++||+ ++|||.|...|-+|.. +.=.+.|++.|+
T Consensus 285 am~~AL~~Agl-~~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~ 325 (398)
T PRK06519 285 SLERLLKPAGG-LAAPTAVISGATGAHPATAEEKAALEAALA 325 (398)
T ss_pred HHHHHHHHCCC-cccCCEEEeCCCCCCCccHHHHHHHHHHcC
Confidence 58899999999 7999999999999987 454567888885
No 306
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=21.46 E-value=1.6e+02 Score=31.89 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=19.3
Q ss_pred chHHHHHHHcCCCccCCCeEEE
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVL 23 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~L 23 (714)
+.++++|+++|++++|||.|++
T Consensus 38 ~a~~~AL~~agl~~~dID~vi~ 59 (394)
T PRK06445 38 MLINRLIEKTGIKPEEIDDIIT 59 (394)
T ss_pred HHHHHHHHHcCCCHHHCCeeEE
Confidence 4578999999999999998884
No 307
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.41 E-value=84 Score=36.99 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=38.6
Q ss_pred CCCeEEEecCCcCcHHHHHHHHHHcCC--CcC---CCCCCCchhhHHHHHHHHH
Q psy5547 17 QIHDIVLVGGSTRIPKVQKLLQDFFNG--KEL---NKSINPDEAVAYGAAVQAA 65 (714)
Q Consensus 17 dId~V~LvGGssriP~vq~~l~~~f~~--~~i---~~~~n~deaVA~GAA~~aa 65 (714)
.++.|+|.||..+-..+++.|.+.+.. -++ ..-.--|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999887642 222 2234678999999998874
No 308
>KOG3133|consensus
Probab=21.28 E-value=3.6e+02 Score=27.19 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCccchhhhHHH
Q psy5547 254 RTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEEVSSMVL 333 (714)
Q Consensus 254 ~~~l~~~l~e~~~WL~~~~~a~~~~~~~k~~eL~~~~~~i~~r~~~~~~rp~~~~~~~~~~~~~~~~~~~s~eev~a~~L 333 (714)
..-++++...+=.||.++...-..+..+|+++.-+++..|..-+.... .+ . . +.-+ .+
T Consensus 162 yeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~~~e~e~------~D--------s---~-~~k~----~v 219 (267)
T KOG3133|consen 162 YEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIESVYENEP------ND--------S---A-THKD----KV 219 (267)
T ss_pred hhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhcCC------cc--------h---h-HHHH----HH
Confidence 456777888888999776543344566666776777777776665542 11 0 0 0001 23
Q ss_pred HHHHHHHHHHhCCCCCeEEEeeCCCCCH
Q psy5547 334 TKMKETAEAYLGKTVSNAVITVPAYFND 361 (714)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~vitVPa~~~~ 361 (714)
..|.+..+ .+|.++..+|=..|..|+.
T Consensus 220 ~elm~eLQ-e~G~PP~ei~~em~~g~~f 246 (267)
T KOG3133|consen 220 LELMQELQ-ELGQPPPEIVNEMPPGLNF 246 (267)
T ss_pred HHHHHHHH-HcCCCcHHHhcCCCCCCCC
Confidence 33333333 4688999999999998763
No 309
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.28 E-value=1.4e+02 Score=32.58 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=34.5
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCc--HHHHHHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRI--PKVQKLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssri--P~vq~~l~~~f~~ 43 (714)
.++++|+++|++++|||.|+..|=+|++ +.=.+.|...|+.
T Consensus 281 a~~~Al~~agi~~~dId~v~~hgtgt~~~d~~E~~al~~~~~~ 323 (411)
T PRK07314 281 AMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGE 323 (411)
T ss_pred HHHHHHHHcCCCHHHCCEEEccccCCccccHHHHHHHHHHhcc
Confidence 4689999999999999999999988865 4555688888863
No 310
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.15 E-value=2e+02 Score=29.88 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=31.9
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCc--CcHHHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGST--RIPKVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGss--riP~vq~~l~~~f~~ 43 (714)
+.++++|+++|+.+++||.|++..++. ..|..-..|...+|-
T Consensus 58 ~A~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~~~i~~~lG~ 101 (319)
T PRK09352 58 EAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARLGA 101 (319)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHHhCC
Confidence 357899999999999999988643321 267777778888864
No 311
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.11 E-value=1e+02 Score=33.88 Aligned_cols=42 Identities=26% Similarity=0.184 Sum_probs=34.2
Q ss_pred chHHHHHHHcCCCccCCCeEEEecCCcCcH--HHHHHHHHHcCC
Q psy5547 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIP--KVQKLLQDFFNG 43 (714)
Q Consensus 2 ~~i~~~l~~a~l~~~dId~V~LvGGssriP--~vq~~l~~~f~~ 43 (714)
..++++|+++|++++|||.|...|-+|..- .=...|.+.|+.
T Consensus 293 ~ai~~AL~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~~ 336 (425)
T PRK06501 293 GAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGE 336 (425)
T ss_pred HHHHHHHHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhcc
Confidence 357899999999999999999999998873 444567777853
No 312
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=21.07 E-value=85 Score=34.67 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=33.6
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcHHHH--HHHHHHcCC
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ--KLLQDFFNG 43 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP~vq--~~l~~~f~~ 43 (714)
.++++|++||++++|||.|++.|=+|..--.. +.|.+.|+.
T Consensus 304 a~~~Al~~Agi~~~dId~ve~hgtgt~~~D~~E~~ai~~~~~~ 346 (437)
T PLN02836 304 AMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSE 346 (437)
T ss_pred HHHHHHHHcCCCHhHcCEEEccCCcCcCcCHHHHHHHHHHhcc
Confidence 47899999999999999999999998654443 458888865
No 313
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=20.99 E-value=68 Score=33.60 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=30.4
Q ss_pred hHHHHHHHcCCCccCCCeEEEecCCcCcH--HHHHHHHHHc
Q psy5547 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIP--KVQKLLQDFF 41 (714)
Q Consensus 3 ~i~~~l~~a~l~~~dId~V~LvGGssriP--~vq~~l~~~f 41 (714)
.++++|+++|++++|||.+++.+.++++- ..++.+...+
T Consensus 210 ~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~ 250 (332)
T cd00825 210 AAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250 (332)
T ss_pred HHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998653 3344444444
No 314
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=20.92 E-value=1.5e+02 Score=32.57 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=36.1
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHcCCCeeEeeechhHH-HHHhhcccccCCCCCCCCcEEEEEEeCCceEEEE
Q psy5547 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA-AIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVS 422 (714)
Q Consensus 352 vitVPa~~~~~~r~~l~~A~~~AGl~~~~li~Ep~AA-a~~~~~~~~~~~~~~~~~~~vlVvD~GggT~Dvs 422 (714)
+++|| .....++++..++..| ++.||+++ |++...+..........+..+++++.|.|.+|..
T Consensus 356 ~~~V~---d~e~~~a~~~~a~~eG-----i~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~ 419 (427)
T PRK12391 356 ARAYP---QTEVFEAAVLFARTEG-----IVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLA 419 (427)
T ss_pred EEEEC---HHHHHHHHHHHHHHcC-----CeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHH
Confidence 45665 4455666666666666 45677655 4444333211101112467899999998888753
No 315
>PLN02854 3-ketoacyl-CoA synthase
Probab=20.91 E-value=2.2e+02 Score=32.18 Aligned_cols=53 Identities=9% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHcCCCccccceEEE-EcCCCCcHHHHHHHHHHc
Q psy5547 516 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL-VGGSTRIPKVQKLLQDFF 568 (714)
Q Consensus 516 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~l~~~l~~~f 568 (714)
+++.-++.-.-+...++++|+++++++.+||.||+ +.+....|.+..+|.+.+
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~L 234 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHY 234 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHh
Confidence 33334444444566778889999999999999987 444556899999999999
No 316
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=20.79 E-value=1.1e+02 Score=31.41 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCccCCCeEE-EecCCcCcHHHHHHHHHHcCCCcCCCCCC
Q psy5547 4 VEKSLRDAKMDKAQIHDIV-LVGGSTRIPKVQKLLQDFFNGKELNKSIN 51 (714)
Q Consensus 4 i~~~l~~a~l~~~dId~V~-LvGGssriP~vq~~l~~~f~~~~i~~~~n 51 (714)
|+++|+++|++++|||.++ =....+-.|.+-.+|-+.||=+.=.++.|
T Consensus 91 v~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr~di~~~n 139 (290)
T PF08392_consen 91 VDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMRSDIKSYN 139 (290)
T ss_pred HHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCCcCeeeec
No 317
>KOG2411|consensus
Probab=20.44 E-value=83 Score=34.47 Aligned_cols=63 Identities=29% Similarity=0.449 Sum_probs=41.2
Q ss_pred CCeEEEecCCcCc--HHHHHHHHHHcCCCc------------CCCCCCCchhhHHHHHHHHHHHhCCCcccccceeeeee
Q psy5547 18 IHDIVLVGGSTRI--PKVQKLLQDFFNGKE------------LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDV 83 (714)
Q Consensus 18 Id~V~LvGGssri--P~vq~~l~~~f~~~~------------i~~~~n~deaVA~GAA~~aa~l~~~~~~~v~~~~~~dv 83 (714)
++.|+|-|||.|| |-+|+.+-+-....+ ++..-.|.--+|+|---++|++.+.++ +.||
T Consensus 519 ~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~s-------IRDV 591 (628)
T KOG2411|consen 519 VNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPS-------IRDV 591 (628)
T ss_pred EccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCc-------hhee
Confidence 5889999999999 788887766331211 122234555677777778888877654 3455
Q ss_pred ceee
Q psy5547 84 TPLS 87 (714)
Q Consensus 84 ~~~~ 87 (714)
..++
T Consensus 592 IAFP 595 (628)
T KOG2411|consen 592 IAFP 595 (628)
T ss_pred eecc
Confidence 5544
Done!