RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5547
(714 letters)
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 604 bits (1560), Expect = 0.0
Identities = 245/270 (90%), Positives = 259/270 (95%), Gaps = 5/270 (1%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+SSMVLTKMKE AEAYLGKTV+NAVITVPAYFNDSQRQATKD+GTIAGLNVLRIINEP
Sbjct: 112 EEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 171
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAAIAYGLDKK G GERNVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGE
Sbjct: 172 TAAAIAYGLDKK-----GGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGE 226
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFDNR+VNHFVQEFKRK+KKD++ NKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG+
Sbjct: 227 DFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGI 286
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
DFYTS+TRARFEEL ADLFRGT+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQ
Sbjct: 287 DFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQ 346
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAAILH 595
DFFNGKELNKSINPDEAVAYGAAVQAAIL
Sbjct: 347 DFFNGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 160 bits (406), Expect = 3e-43
Identities = 63/68 (92%), Positives = 66/68 (97%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EPVEK LRDAK+DK+QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA
Sbjct: 309 LEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 368
Query: 61 AVQAAILH 68
AVQAAIL
Sbjct: 369 AVQAAILS 376
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 585 bits (1510), Expect = 0.0
Identities = 242/337 (71%), Positives = 287/337 (85%), Gaps = 9/337 (2%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++PVEK L+DA MDK +H++VLVGGSTRIPKVQ L++DFFNGKE KSINPDEAVAYGA
Sbjct: 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGA 375
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
AVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGGVMT LI+RNTTIPTK++Q FTTY+D
Sbjct: 376 AVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYAD 435
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQPGVLIQV+EGERAMTKDNNLLGKF L IPPAPRGVPQIEVTFDIDANGILNVSA +K
Sbjct: 436 NQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDK 495
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
STGK NKITITND+GRLSK DI+RMVN+AEKYKAEDE + + AKN LE+YC++MK+T+
Sbjct: 496 STGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTL 555
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
+DEK+K K+S +++ I ++ ++WL+ NQLAEKEEFE KQKE+E++CNPI+TK+YQA
Sbjct: 556 QDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQA 615
Query: 301 ------GGAPGGFPGA--PGAAP-GAGAGPGPTIEEV 328
GG PGG PG GA P GAGA GPT+EEV
Sbjct: 616 AGGGMPGGMPGGMPGGMPGGAGPAGAGASSGPTVEEV 652
Score = 567 bits (1463), Expect = 0.0
Identities = 236/298 (79%), Positives = 267/298 (89%), Gaps = 6/298 (2%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+SSMVL KMKE AEAYLGK V +AV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEP
Sbjct: 118 EEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 177
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAAIAYGLDKK G GE+NVLIFDLGGGTFDVS+LTIEDGIFEVK+TAGDTHLGGE
Sbjct: 178 TAAAIAYGLDKK-----GDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGE 232
Query: 446 DFDNRMVNHFVQEFKRKYK-KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 504
DFDNR+V VQ+FKRK + KDL++N+RALRRLRT CERAKRTLSSSTQA+IEIDSLFEG
Sbjct: 233 DFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG 292
Query: 505 VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLL 564
+D+ +++RARFEEL D FR T++PVEK L+DA MDK +H++VLVGGSTRIPKVQ L+
Sbjct: 293 IDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLI 352
Query: 565 QDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 622
+DFFNGKE KSINPDEAVAYGAAVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGG
Sbjct: 353 KDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 523 bits (1350), Expect = e-179
Identities = 204/318 (64%), Positives = 251/318 (78%), Gaps = 17/318 (5%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T E++S+MVL K+KETAEAYLG+ V++AVITVPAYFND+QRQATKD+G IAGLNVLRIIN
Sbjct: 109 TPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIIN 168
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDKK ERNVL+FDLGGGTFDVSIL I DG+FEV +T GDTHLG
Sbjct: 169 EPTAAALAYGLDKK------DKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLG 222
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLF 502
GEDFDNR+V+HFV+EFK+KY DL+ + RAL+RLR A E+AK LSS T+ ++ +
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 503 E-GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561
G D ++TRA+FEEL ADLF T+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 562 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 621
+L+++FF GKE +K +NPDEAVA GAAVQA +L G +V+D+LLLDVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLG 399
Query: 622 GF------ELTSIPPATS 633
G T+IP S
Sbjct: 400 GVMTKLIPRNTTIPTKKS 417
Score = 448 bits (1155), Expect = e-150
Identities = 177/300 (59%), Positives = 226/300 (75%), Gaps = 11/300 (3%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EPVEK+L+DAK+ K++I ++VLVGGSTRIP VQ+L+++FF GKE +K +NPDEAVA GA
Sbjct: 309 LEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKGVNPDEAVAIGA 367
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
AVQA +L G +V+D+LLLDVTPLSLGIET GGVMT LI RNTTIPTK++Q F+T +D
Sbjct: 368 AVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQIFSTAAD 425
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQ V IQVY+GER M DN LLG FEL IPPAPRGVPQIEVTFDIDANGIL VSA +K
Sbjct: 426 NQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILTVSAKDK 485
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
TGKE KITIT G LS ++IERMV DAE+Y AED+K+K I AKN E Y ++++ ++
Sbjct: 486 GTGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSL 544
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSN-QLAEKEEFEDKQKELEAICNPIITKLYQ 299
++E DK+ A++ K + I+WL + +KEE E K +EL+ + PI ++YQ
Sbjct: 545 KEE--GDKLPEADKK----KVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMYQ 598
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 488 bits (1258), Expect = e-168
Identities = 184/267 (68%), Positives = 228/267 (85%), Gaps = 6/267 (2%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+S+MVLTKMKE AEAYLGK V +AV+TVPAYFND+QRQATKD+GTIAGLNV+RIINEP
Sbjct: 114 EEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEP 173
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAAIAYGLDKK GE+N+L+FDLGGGTFDVS+LTI++G+FEV +T GDTHLGGE
Sbjct: 174 TAAAIAYGLDKK------GGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGE 227
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFD R++ HF++ FK+K+ KD++ +KRAL++LR E+AKR LSS Q IEI+SLF+G
Sbjct: 228 DFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGE 287
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
DF ++TRA+FEELN DLF+ T++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL+
Sbjct: 288 DFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLK 347
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAA 592
+FFNGKE ++ INPDEAVAYGAAVQA
Sbjct: 348 EFFNGKEPSRGINPDEAVAYGAAVQAG 374
Score = 128 bits (323), Expect = 5e-32
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++PV+K L DA + K+ I +IVLVGGSTRIPKVQ+LL++FFNGKE ++ INPDEAVAYGA
Sbjct: 310 LKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINPDEAVAYGA 369
Query: 61 AVQAA 65
AVQA
Sbjct: 370 AVQAG 374
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 472 bits (1218), Expect = e-159
Identities = 174/304 (57%), Positives = 225/304 (74%), Gaps = 22/304 (7%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
+E+S+M+L K+K+ AE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL VLRIINEP
Sbjct: 111 QEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEP 170
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAA+AYGLDKK G+ +L++DLGGGTFDVSIL I DG+FEV ST GDTHLGG+
Sbjct: 171 TAAALAYGLDKK-------GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGD 223
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL-FEG 504
DFD R++++ EFK++ DL +K AL+RL+ A E+AK LSS+ Q I +L F
Sbjct: 224 DFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEI---NLPFIT 280
Query: 505 VD------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 558
D +TRA+FEEL DL T+EP +++L+DA + + I +++LVGGSTR+P
Sbjct: 281 ADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMP 340
Query: 559 KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIE 618
VQ+L+++FF GKE NK +NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIE
Sbjct: 341 AVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIE 395
Query: 619 TAGG 622
T GG
Sbjct: 396 TLGG 399
Score = 429 bits (1107), Expect = e-142
Identities = 160/313 (51%), Positives = 214/313 (68%), Gaps = 11/313 (3%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EP +++L+DA + + I +++LVGGSTR+P VQ+L+++FF GKE NK +NPDE VA GA
Sbjct: 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGA 368
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIPTK++Q F+T +D
Sbjct: 369 AIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAAD 424
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQP V I V +GER M DN LG+F LT IPPAPRGVPQIEVTFDIDANGI++VSA +K
Sbjct: 425 NQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDK 484
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
TGKE ITIT G LS E+IERMV DAE ED+K+K ++ A+N +S + + T+
Sbjct: 485 GTGKEQSITITASSG-LSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTL 543
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
++ L DK+ + E+ +I ++ + L +KE + K +EL + +YQ
Sbjct: 544 KE--LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQ 598
Query: 301 GGAPGGFPGAPGA 313
A G GA
Sbjct: 599 AQAAQGAAGAAAK 611
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 419 bits (1080), Expect = e-139
Identities = 177/303 (58%), Positives = 224/303 (73%), Gaps = 15/303 (4%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T +E+S+M+L K+K+ AEAYLG+ V+ AVITVPAYFND+QRQATKD+G IAGL VLRIIN
Sbjct: 106 TPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIIN 165
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDK + +L+FDLGGGTFDVSIL I DG+FEV STAGDTHLG
Sbjct: 166 EPTAAALAYGLDK------SKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLG 219
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G+DFD R+++ EFK++ DL+ +K AL+RL+ A E+AK LSS I + +
Sbjct: 220 GDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITA 279
Query: 504 GVD----FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 559
++TRA+FEEL ADL T EPV ++L+DA + + I +++LVGGSTRIP
Sbjct: 280 DASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPA 339
Query: 560 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIET 619
VQ+L++DFF GKE NKS+NPDE VA GAA+Q +L GD V+D+LLLDVTPLSLGIET
Sbjct: 340 VQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIET 394
Query: 620 AGG 622
GG
Sbjct: 395 LGG 397
Score = 385 bits (992), Expect = e-125
Identities = 161/299 (53%), Positives = 212/299 (70%), Gaps = 11/299 (3%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
EPV ++L+DA + + I +++LVGGSTRIP VQ+L++DFF GKE NKS+NPDE VA GA
Sbjct: 308 KEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGA 366
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIPTK++Q F+T +D
Sbjct: 367 AIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAAD 422
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQP V I V +GER M DN LG+FELT IPPAPRGVPQIEVTFDIDANGIL+VSA +K
Sbjct: 423 NQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDK 482
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
TGKE ITIT G LS+E+IERMV +AE ED+K+K I A+N+ +S + + T+
Sbjct: 483 GTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTL 541
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299
++ DK+ + E+ +I ++ + L + EE + K +EL+ + +YQ
Sbjct: 542 KE--AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMYQ 595
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 411 bits (1059), Expect = e-136
Identities = 188/316 (59%), Positives = 238/316 (75%), Gaps = 18/316 (5%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T EE+S+M+LTK+KE AEAYLG+ V++AVITVPAYFND+QRQATKD+ IAGLNVLR+IN
Sbjct: 96 TPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLIN 155
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDK E+ VL++DLGGGTFDVS+L I DG+FEV +T GD HLG
Sbjct: 156 EPTAAALAYGLDKG-------KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLG 208
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G+DFDN ++++ V EFK K DL ++K AL+RLR A E+AK LSS+TQ SI + S+
Sbjct: 209 GDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGG 268
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
+D +TRA+FEEL DL T+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L
Sbjct: 269 DIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQEL 328
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG- 622
+++FF GKE KSINPDEAVA GAA+QAA+L G+ D+LLLDV PLSLGIET GG
Sbjct: 329 VKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGV 383
Query: 623 -----FELTSIPPATS 633
T+IP S
Sbjct: 384 RTPIIERNTTIPVKKS 399
Score = 327 bits (841), Expect = e-103
Identities = 157/300 (52%), Positives = 210/300 (70%), Gaps = 13/300 (4%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EPVE++L+DA ++K+ I ++LVGGSTRIP VQ+L+++FF GKE KSINPDEAVA GA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGA 351
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+QAA+L G+ D+LLLDV PLSLGIET GGV T +I+RNTTIP K++Q F+T +D
Sbjct: 352 AIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAAD 407
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
Q V I V++GER M DN LG+FEL IPPAPRGVPQIEVTFDIDANGILNV+A +
Sbjct: 408 GQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDL 467
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
TGKE ITI G LS E+IERMV DAE A D+K + ++ A+N ES ++++ +
Sbjct: 468 GTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKAL 526
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
++ K+S E+ +I + D+ + L+ EKEE + K +EL+ + + K YQ
Sbjct: 527 KEI---VKVSEEEKEKIEEAITDLEEALEG----EKEEIKAKIEELQEVTQKLAEKKYQQ 579
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 395 bits (1016), Expect = e-132
Identities = 157/275 (57%), Positives = 205/275 (74%), Gaps = 12/275 (4%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T +E+S+M+L K+KE AEAYLG+ V+ AVITVPAYFNDSQRQATKD+G IAGL VLRIIN
Sbjct: 110 TPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIIN 169
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDKK G +L++DLGGGTFDVSIL I DG+FEV +T GDTHLG
Sbjct: 170 EPTAAALAYGLDKK-------GNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLG 222
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G+DFD R+++ V+EFK++ DL +K AL+RL+ A E+AK LSS T+ I + +
Sbjct: 223 GDDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITA 282
Query: 504 GVD----FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 559
++TRA+FEEL DL T+EPV+++L+DAK+ + I +++LVGGSTRIP
Sbjct: 283 DATGPKHLEMTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPA 342
Query: 560 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
VQ+L+++ F GKE NK +NPDE VA GAA+Q +L
Sbjct: 343 VQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 107 bits (269), Expect = 4e-25
Identities = 37/67 (55%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EPV+++L+DAK+ + I +++LVGGSTRIP VQ+L+++ F GKE NK +NPDE VA GA
Sbjct: 311 IEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF-GKEPNKGVNPDEVVAIGA 369
Query: 61 AVQAAIL 67
A+Q +L
Sbjct: 370 AIQGGVL 376
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 393 bits (1013), Expect = e-132
Identities = 147/269 (54%), Positives = 196/269 (72%), Gaps = 6/269 (2%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
+ EEVS+++L K+KE AEAYLG+ V+ AVITVPAYFND+QR+ATK++ IAGLNV+R+IN
Sbjct: 107 SPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLIN 166
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDKK R +L+FDLGGGTFDVS++ +E G+FEV +T GD HLG
Sbjct: 167 EPTAAALAYGLDKK-----DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLG 221
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G+DFDN + ++ ++FK K DL + RALRRL+ A E+AK LSSS +A+I + L
Sbjct: 222 GDDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGS 281
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
G D +TR FEEL L T++ VE+ L DA + I ++LVGGS+RIP V++L
Sbjct: 282 GGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVREL 341
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAA 592
L++ F GK+ +SI+PDEAVA GAA+ AA
Sbjct: 342 LEELF-GKKPLRSIDPDEAVALGAAIYAA 369
Score = 96.5 bits (241), Expect = 2e-21
Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++ VE+ L DA + I ++LVGGS+RIP V++LL++ F GK+ +SI+PDEAVA GA
Sbjct: 306 IDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELF-GKKPLRSIDPDEAVALGA 364
Query: 61 AVQAA 65
A+ AA
Sbjct: 365 AIYAA 369
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 386 bits (992), Expect = e-125
Identities = 175/305 (57%), Positives = 226/305 (74%), Gaps = 18/305 (5%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T +E+S+M+L K+K+ AEAYLG+ V+ AVITVPAYF D+QRQATKD+GTIAGL VLRIIN
Sbjct: 109 TPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIIN 168
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDK+ E+ +L+FDLGGGTFDVSIL + DG+FEVK+TAG+ HLG
Sbjct: 169 EPTAAALAYGLDKQ------DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLG 222
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G+DFDN +V+ V+ F+++ DL+ +K AL+RLR A E+AK LSS SI + F
Sbjct: 223 GDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLP--FI 280
Query: 504 GVD------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 557
D +TRA+FEEL DL T+EP++++L+DA + I ++LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 558 PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI 617
P VQ+ +Q FF GK+ ++S+NPDEAVA GAA+QA +L G EV+DLLLLDVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGI 396
Query: 618 ETAGG 622
ET G
Sbjct: 397 ETLGE 401
Score = 334 bits (859), Expect = e-105
Identities = 150/302 (49%), Positives = 203/302 (67%), Gaps = 8/302 (2%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EP++++L+DA + I ++LVGGSTRIP VQ+ +Q FF GK+ ++S+NPDEAVA GA
Sbjct: 311 IEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGA 370
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+QA +L G EV+DLLLLDVTPLSLGIET G V T +I+RNTTIPT ++Q F+T +D
Sbjct: 371 AIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATD 426
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
Q V I V +GERAM KDN LGKF LT IPPAPRGVPQIEV+F+ID NGIL VSA ++
Sbjct: 427 GQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQ 486
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
TG+E I ITN G LS +IERM +AEKY ED ++K +I KN +S ++ +ST+
Sbjct: 487 GTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
++ + IS + + K + L + EE + + +E + I ++YQ
Sbjct: 546 KEN--GELISEELKQRAEQKVEQLEAALTDPNI-SLEELKQQLEEFQQALLAIGAEVYQQ 602
Query: 301 GG 302
GG
Sbjct: 603 GG 604
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 367 bits (943), Expect = e-121
Identities = 156/272 (57%), Positives = 201/272 (73%), Gaps = 12/272 (4%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
++ + VL KMKETAEAYLGK V NAVITVPAYFNDSQRQATKD+G IAGLNVLR+INEPT
Sbjct: 114 QIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPT 173
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAA+AYGLDKK ++ + ++DLGGGTFD+SIL I+ G+FEVKST GDT LGGED
Sbjct: 174 AAALAYGLDKK-------DDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGED 226
Query: 447 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 506
FDN ++ H V+EFK++ DLT + AL+RLR A E+AK LSSS Q I + +
Sbjct: 227 FDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADAS 286
Query: 507 ----FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 562
+TRA+FE L DL + T+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+
Sbjct: 287 GPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQE 346
Query: 563 LLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
+++ F GKE +K +NPDEAVA GAA+Q +L
Sbjct: 347 TVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 90.1 bits (224), Expect = 3e-19
Identities = 35/67 (52%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EP +K+L+DA + K+ I +++LVGG TR+PKVQ+ +++ F GKE +K +NPDEAVA GA
Sbjct: 312 IEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIF-GKEPSKGVNPDEAVAIGA 370
Query: 61 AVQAAIL 67
A+Q +L
Sbjct: 371 AIQGGVL 377
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 374 bits (963), Expect = e-121
Identities = 179/312 (57%), Positives = 228/312 (73%), Gaps = 16/312 (5%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+S+ VL K+ E A YLG+TV+ AVITVPAYFNDSQRQATKD+G IAGL VLRIINEP
Sbjct: 113 EEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEP 172
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAA++AYGLDKK +L+FDLGGGTFDVSIL + DG+FEV ST+GDTHLGG+
Sbjct: 173 TAASLAYGLDKK-------NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGD 225
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDSLF 502
DFD ++VN ++EFK+K DL+ +++AL+RL A E+AK LS+ TQ I I +
Sbjct: 226 DFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQ 285
Query: 503 EG-VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561
G ++TRA+FEEL +DL PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q
Sbjct: 286 TGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQ 345
Query: 562 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 621
+L++ GK+ N+S+NPDE VA GAAVQA +L G EV+D+LLLDVTPLSLG+ET G
Sbjct: 346 ELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLG 400
Query: 622 GFELTSIPPATS 633
G IP T+
Sbjct: 401 GVMTKIIPRNTT 412
Score = 328 bits (844), Expect = e-103
Identities = 155/299 (51%), Positives = 207/299 (69%), Gaps = 13/299 (4%)
Query: 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62
PVE +L+DAK+DK+ I ++VLVGGSTRIP +Q+L++ GK+ N+S+NPDE VA GAAV
Sbjct: 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAV 372
Query: 63 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 122
QA +L G EV+D+LLLDVTPLSLG+ET GGVMT +I RNTTIPTK+++ F+T DNQ
Sbjct: 373 QAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQ 428
Query: 123 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 182
V I V +GER + KDN LG F L IPPAPRGVPQIEVTFDIDANGIL+V+A +K T
Sbjct: 429 TNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGT 488
Query: 183 GKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMED 242
GKE ITI L K+++ERMV +AEK AED++++ I KN ES C+ ++ +
Sbjct: 489 GKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCY--QAEKQL 545
Query: 243 EKLKDKISSAERTQILDKCNDVIKWLDSN-QLAEKEEFEDKQKELEAICNPIITKLYQA 300
++LKDKIS ++ +I ++IK L Q E + +EL+ I ++Y +
Sbjct: 546 KELKDKISEEKKEKI----ENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYSS 600
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 366 bits (942), Expect = e-117
Identities = 159/312 (50%), Positives = 214/312 (68%), Gaps = 16/312 (5%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+S+M+L K+ + A YLG+ V+ AVITVPAYFNDSQRQAT+D+G IAGL V RI+NEP
Sbjct: 113 EELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEP 172
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAA+AYGLD+ S + VL+FDLGGGTFDVS+L + +G+FEVK+T+GDT LGG
Sbjct: 173 TAAALAYGLDR-------SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGN 225
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFD R+V+ ++F K DL +++AL+RL A E+AK LS + I + +
Sbjct: 226 DFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATE 285
Query: 506 D----FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561
D T + R +FE L DL + PV+++L+DA + I ++VLVGGSTR+P VQ
Sbjct: 286 DGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQ 345
Query: 562 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 621
+L++ +E N+++NPDE VA GAA+QA IL G E++DLLLLDVTPLSLG+ET G
Sbjct: 346 QLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIG 400
Query: 622 GFELTSIPPATS 633
G IP T+
Sbjct: 401 GVMKKLIPRNTT 412
Score = 289 bits (742), Expect = 5e-88
Identities = 126/277 (45%), Positives = 181/277 (65%), Gaps = 8/277 (2%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+ PV+++L+DA + I ++VLVGGSTR+P VQ+L++ +E N+++NPDE VA GA
Sbjct: 312 LRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGA 370
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+QA IL G E++DLLLLDVTPLSLG+ET GGVM LI RNTTIP +++ F+T +
Sbjct: 371 AIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSEN 426
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQ V I V++GER M DN LG+F+L+ IPPAPRGVPQ++V FDIDANGIL VSA ++
Sbjct: 427 NQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDR 486
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
+TG+E +TI LS++++ RM+ +AE ED +++ I +N + + +
Sbjct: 487 TTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRL 545
Query: 241 EDEKLKDKISSAERTQ--ILDKCNDVIKWLDSNQLAE 275
D L+ AER + + DV L+ + E
Sbjct: 546 RDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRE 582
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 363 bits (934), Expect = e-116
Identities = 170/302 (56%), Positives = 220/302 (72%), Gaps = 20/302 (6%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
++ + VL KMKETAE+YLG+ V AVITVPAYFNDSQRQATKD+G IAGL+VLRIINEPT
Sbjct: 153 QIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPT 212
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAA+A+G+DK G + + ++DLGGGTFD+SIL I G+FEVK+T G+T LGGED
Sbjct: 213 AAALAFGMDKNDG-------KTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGED 265
Query: 447 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 506
FD R++N+ + EFK++ DL +K AL+RLR A E AK LSS TQ EI+ F D
Sbjct: 266 FDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQ--TEINLPFITAD 323
Query: 507 ------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKV 560
++RA+ EEL DL + T+EP EK ++DA + K +++D++LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 561 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA 620
+ ++ F GKE +K +NPDEAVA GAA+QA +L G E++DLLLLDVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETL 438
Query: 621 GG 622
GG
Sbjct: 439 GG 440
Score = 335 bits (860), Expect = e-105
Identities = 157/312 (50%), Positives = 220/312 (70%), Gaps = 11/312 (3%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EP EK ++DA + K +++D++LVGG TR+PKV + ++ F GKE +K +NPDEAVA GA
Sbjct: 351 IEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGA 409
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+QA +L G E++DLLLLDVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D
Sbjct: 410 AIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAAD 465
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQ V I+V++GER M DN LLG+F+L IPPAPRGVPQIEVTFD+DANGI+N+SA++K
Sbjct: 466 NQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDK 525
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
STGK+ +ITI + G LS E+IE+MV +AE+YK +DEK+K ++ AKN E+ ++++ +
Sbjct: 526 STGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQL 584
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
D LKDKIS A++ ++ K + L S + + +DK K+L+ I + Y+
Sbjct: 585 SD--LKDKISDADKDELKQKITKLRSTLSSEDV---DSIKDKTKQLQEASWKISQQAYKQ 639
Query: 301 GGAPGGFPGAPG 312
G +
Sbjct: 640 GNSDNQQSEQST 651
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 336 bits (864), Expect = e-109
Identities = 152/268 (56%), Positives = 205/268 (76%), Gaps = 7/268 (2%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
+++S VL K+K+TAEAYLGK V AVITVPAYFNDSQRQATKD+GT+AGL VLRIINEPT
Sbjct: 113 QIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPT 172
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAA+AYG+DK+ +N+ ++DLGGGTFD+SIL IEDG+FEVK+T GDT LGGED
Sbjct: 173 AAALAYGIDKR------KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGED 226
Query: 447 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 506
FDN +V + ++EFKRKYK DLT NK+A++R++ A E+AK LSSS ++ IE+ L
Sbjct: 227 FDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKH 286
Query: 507 FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 566
++TR FE+L + + T+ P ++ L+DA + K I +++LVGG TR+P +Q ++Q+
Sbjct: 287 LRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQE 346
Query: 567 FFNGKELNKSINPDEAVAYGAAVQAAIL 594
F GK+ +KS+NPDEAVA GAA+Q +IL
Sbjct: 347 IF-GKKPSKSVNPDEAVALGAAIQGSIL 373
Score = 89.9 bits (223), Expect = 3e-19
Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62
P ++ L+DA + K I +++LVGG TR+P +Q ++Q+ F GK+ +KS+NPDEAVA GAA+
Sbjct: 310 PCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIF-GKKPSKSVNPDEAVALGAAI 368
Query: 63 QAAIL 67
Q +IL
Sbjct: 369 QGSIL 373
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 341 bits (877), Expect = e-108
Identities = 134/297 (45%), Positives = 194/297 (65%), Gaps = 20/297 (6%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
EVS+ +L +++ AE LG + AVITVPAYF+D+QRQATKD+ +AGLNVLR++NEPT
Sbjct: 128 EVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPT 187
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAAIAYGLD G E + ++DLGGGTFD+SIL + G+FEV +T GD+ LGG+D
Sbjct: 188 AAAIAYGLDS--GQ-----EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDD 240
Query: 447 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 506
FD+ + + ++ + L + R L A AK LS + + + +L++G
Sbjct: 241 FDHLLADWILE--QAGLSPRLDPEDQ--RLLLDAARAAKEALSDADSVEVSV-ALWQG-- 293
Query: 507 FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 566
+TR +F L A L + T+ ++LRDA ++ ++ ++V+VGGSTR+P V++ + +
Sbjct: 294 ---EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGE 350
Query: 567 FFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGF 623
FF G+ SI+PD+ VA GAA+QA IL G+K + D+LLLDV PLSLG+ET GG
Sbjct: 351 FF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Score = 256 bits (657), Expect = 3e-76
Identities = 100/226 (44%), Positives = 149/226 (65%), Gaps = 4/226 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+ ++LRDA ++ ++ ++V+VGGSTR+P V++ + +FF G+ SI+PD+ VA GA
Sbjct: 312 LLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGA 370
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+QA IL G+K + D+LLLDV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D
Sbjct: 371 AIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKD 428
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
Q + I V +GER + D L +FEL IPP G +I VTF +DA+G+L+V+A+EK
Sbjct: 429 GQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEK 488
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAK 226
STG E I + G L+ ++I RM+ D+ + ED + +A+ K
Sbjct: 489 STGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQARALAEQK 533
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 339 bits (870), Expect = e-106
Identities = 169/313 (53%), Positives = 215/313 (68%), Gaps = 16/313 (5%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+S+ VL K+ + A +L V+ AVITVPAYFNDSQR ATKD+G IAGL VLRIINEP
Sbjct: 150 EEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEP 209
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAA++AYG +KK +L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+
Sbjct: 210 TAASLAYGFEKK-------SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 262
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFD R+V+ FK+ DL +K+AL+RL A E+AK LSS TQ SI + +
Sbjct: 263 DFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATA 322
Query: 506 D----FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQ 561
D T++TRA+FEEL +DL PVE +LRDAK+ I +++LVGGSTRIP VQ
Sbjct: 323 DGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQ 382
Query: 562 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAG 621
+L++ GK+ N ++NPDE VA GAAVQA +L G EV D++LLDVTPLSLG+ET G
Sbjct: 383 ELVKK-LTGKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLG 437
Query: 622 GFELTSIPPATSR 634
G IP T+
Sbjct: 438 GVMTKIIPRNTTL 450
Score = 299 bits (767), Expect = 1e-91
Identities = 147/322 (45%), Positives = 201/322 (62%), Gaps = 16/322 (4%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
PVE +LRDAK+ I +++LVGGSTRIP VQ+L++ GK+ N ++NPDE VA GAA
Sbjct: 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL-TGKDPNVTVNPDEVVALGAA 408
Query: 62 VQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDN 121
VQA +L G EV D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++ F+T +D
Sbjct: 409 VQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADG 464
Query: 122 QPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKS 181
Q V I V +GER +DN LG F L IPPAPRGVPQIEV FDIDANGIL+VSA +K
Sbjct: 465 QTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKG 524
Query: 182 TGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241
TGK+ ITIT L K+++ERMV +AEK+ ED++++ + KN +S + + ++
Sbjct: 525 TGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583
Query: 242 DEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAG 301
+ L DK+ + + ++ K ++ + S ++ +D L I LY
Sbjct: 584 E--LGDKVPADVKEKVEAKLKELKDAIASGST---QKMKDAMAALNQEVMQIGQSLYNQP 638
Query: 302 GAPGGFPGAPGAAPGAGAGPGP 323
GA G G APG AG
Sbjct: 639 GAGGA-----GPAPGGEAGSSS 655
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 322 bits (828), Expect = e-104
Identities = 129/267 (48%), Positives = 175/267 (65%), Gaps = 12/267 (4%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+SS+VL +KE AEAYLG+ V+ AVI+VPAYFND QR+ATK +G +AGL V R+INEP
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAA+AYGL K E L+FDLGGGTFDVS+L + DG+ EV+++AGD +LGGE
Sbjct: 145 TAAALAYGLHDK------DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGE 198
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DF + F++ K + L RL A ERAKR LS +A + + EG
Sbjct: 199 DFTRALAEAFLK--KHGLDFEKLDPSE-LARLLRAAERAKRALSDQEEAEMSVR--IEGE 253
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
+ ++TR FEE+ L +P+E++LRDA++ + I +I+LVGG+TR+P V+KL+
Sbjct: 254 ELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVS 313
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAA 592
F G+ +NPDE VA GAA+QA
Sbjct: 314 RLF-GRFPLVHLNPDEVVALGAAIQAG 339
Score = 89.9 bits (224), Expect = 2e-19
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
+P+E++LRDA++ + I +I+LVGG+TR+P V+KL+ F G+ +NPDE VA GAA
Sbjct: 277 QPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLF-GRFPLVHLNPDEVVALGAA 335
Query: 62 VQAA 65
+QA
Sbjct: 336 IQAG 339
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 319 bits (820), Expect = e-100
Identities = 142/300 (47%), Positives = 189/300 (63%), Gaps = 22/300 (7%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
EVS+ +L K+K+ AE LG + AVITVPAYF+D+QRQATKD+ +AGLNVLR++NEPT
Sbjct: 108 EVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPT 167
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAA+AYGLDK + E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+D
Sbjct: 168 AAAVAYGLDK-------ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDD 220
Query: 447 FDNRMVNHFVQEFKRKYKK---DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
FD+ + K+ N R L A AK L + S+E+D +
Sbjct: 221 FDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEAL--TDAESVEVDFTLD 271
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
G DF +TR FE L L + T+ ++LRDA + +I +VLVGGSTR+P V++
Sbjct: 272 GKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRA 331
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGF 623
+ + F G+E I+PD+ VA GAA+QA +L G++ DLLLLDVTPLSLGIET GG
Sbjct: 332 VAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGL 388
Score = 251 bits (642), Expect = 3e-74
Identities = 112/257 (43%), Positives = 158/257 (61%), Gaps = 6/257 (2%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+ ++LRDA + +I +VLVGGSTR+P V++ + + F G+E I+PD+ VA GA
Sbjct: 296 LSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGA 354
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+QA +L G++ DLLLLDVTPLSLGIET GG++ +I RNT IP + Q FTTY D
Sbjct: 355 AIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKD 412
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
Q ++I V +GER + +D L +FEL IPP G +I VTF +DA+G+L VSA E+
Sbjct: 413 GQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQ 472
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
STG E I + G LS E+IERM+ D+ K+ ED +A+ K E +++ +
Sbjct: 473 STGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAAL 531
Query: 241 EDEKLKDKISSAERTQI 257
+ D +S ER I
Sbjct: 532 AAD--GDLLSEDERAAI 546
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 300 bits (772), Expect = 9e-96
Identities = 126/271 (46%), Positives = 174/271 (64%), Gaps = 2/271 (0%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
+ E+V +M+LTK+KE AE L V++ VI+VP+YF D+QR+A D+ IAGLN LR++N
Sbjct: 112 SPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMN 171
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
E TA A+AYG+ K RNV D+G + VSI+ G +V STA D +LG
Sbjct: 172 ETTATALAYGIYKTDLPEEEKP-RNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLG 230
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G DFD + HF +EFK KYK D+ +N +A RL ACE+ K+ LS++T+A + I+ L E
Sbjct: 231 GRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
D + R FEEL A L EP+EK+L +A + K IH + +VGGSTRIP V++L
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
+ F GKEL+ ++N DEAVA G A+Q A+L
Sbjct: 351 IAKVF-GKELSTTLNADEAVARGCALQCAML 380
Score = 85.7 bits (213), Expect = 8e-18
Identities = 35/66 (53%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
EP+EK+L +A + K IH + +VGGSTRIP V++L+ F GKEL+ ++N DEAVA G A
Sbjct: 316 EPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARGCA 374
Query: 62 VQAAIL 67
+Q A+L
Sbjct: 375 LQCAML 380
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 298 bits (766), Expect = 3e-95
Identities = 124/265 (46%), Positives = 165/265 (62%), Gaps = 18/265 (6%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
EVS+ +L +KE AE LG + AVITVPAYF+D+QRQATKD+ +AGLNVLR++NEPT
Sbjct: 108 EVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPT 167
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAA+AYGLDKK E ++DLGGGTFDVSIL + G+FEV +T GD+ LGG+D
Sbjct: 168 AAALAYGLDKKK-------EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDD 220
Query: 447 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 506
FD + + +KY + L +AK LS + + +E+ G D
Sbjct: 221 FDQLLAELLL----KKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VEVR----GQD 270
Query: 507 FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 566
F ++TR FE+L L + T+ +++LRDA + I ++LVGGSTRIP VQ+ +
Sbjct: 271 FKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSK 330
Query: 567 FFNGKELNKSINPDEAVAYGAAVQA 591
FF K L INPDE VA GAA+QA
Sbjct: 331 FFGQKPLC-DINPDEVVAIGAALQA 354
Score = 83.8 bits (208), Expect = 2e-17
Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
+++LRDA + I ++LVGGSTRIP VQ+ + FF K L INPDE VA GAA
Sbjct: 293 NICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC-DINPDEVVAIGAA 351
Query: 62 VQA 64
+QA
Sbjct: 352 LQA 354
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 292 bits (749), Expect = 3e-89
Identities = 153/320 (47%), Positives = 217/320 (67%), Gaps = 16/320 (5%)
Query: 318 GAGPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLN 377
G G + ++ + VL KMKETAE +LG VSNAV+T PAYFND+QRQATKD+GTIAGLN
Sbjct: 130 GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLN 189
Query: 378 VLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 437
V+R++NEPTAAA+AYG+DK S + ++DLGGGTFD+S+L I G+FEVK+T
Sbjct: 190 VIRVVNEPTAAALAYGMDKTKDSL-------IAVYDLGGGTFDISVLEIAGGVFEVKATN 242
Query: 438 GDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE 497
GDTHLGGEDFD + ++ ++EF++ DL+ + AL+R+R A E+AK LSS+ + +
Sbjct: 243 GDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVN 302
Query: 498 IDSLFEGVD----FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGG 553
+ + D ++R++FE + L ++ P ++ ++DA ++ +I+D+VLVGG
Sbjct: 303 LPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGG 362
Query: 554 STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPL 613
TR+PKV + ++ FF K+ + +NPDEAVA GAA +L GD V+ L+LLDVTPL
Sbjct: 363 MTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPL 417
Query: 614 SLGIETAGGFELTSIPPATS 633
SLGIET GG IP T+
Sbjct: 418 SLGIETLGGVFTRMIPKNTT 437
Score = 244 bits (625), Expect = 2e-71
Identities = 136/310 (43%), Positives = 202/310 (65%), Gaps = 9/310 (2%)
Query: 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62
P ++ ++DA ++ +I+D+VLVGG TR+PKV + ++ FF K+ + +NPDEAVA GAA
Sbjct: 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAAT 397
Query: 63 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 122
+L GD V+ L+LLDVTPLSLGIET GGV T +I +NTTIPTK++QTF+T +DNQ
Sbjct: 398 LGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQ 453
Query: 123 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 182
V I+V++GER M DN ++G+F+L IPPAPRGVPQIEVTFDIDANGI +V+A +K+T
Sbjct: 454 TQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKAT 513
Query: 183 GKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMED 242
GK ITIT + G LSKE IE+M+ D+E++ D ++ ++ +N+ E+ + + +
Sbjct: 514 GKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE 572
Query: 243 EKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGG 302
K +S AE+ + ++ K +++ +A+ + K +A+ T+ QA
Sbjct: 573 WKY---VSDAEKENVKTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQAAA 629
Query: 303 APGGFPGAPG 312
A G G
Sbjct: 630 ANSGSSSNSG 639
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 279 bits (715), Expect = 2e-87
Identities = 121/269 (44%), Positives = 181/269 (67%), Gaps = 4/269 (1%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
+ +EV+ ++ KMKE A++ LG + VITVP YF++ Q+ A +++ AG NVLRII+
Sbjct: 111 SPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIH 170
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EP+AAA+AYG+ G + +G+ VL++ LGG + DV+IL + G++ V +T+ D +LG
Sbjct: 171 EPSAAALAYGI----GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLG 226
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
GE F + + EFKRK+K+D+ N RA+ +L A E AK+ LS+ A+ ++SL+E
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
G+DF SV+RARFE L + LF +EP+EK L A + K I+ +VL GGS+RIPK+Q+L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAA 592
++D F E+ SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
Score = 81.3 bits (201), Expect = 2e-16
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EP+EK L A + K I+ +VL GGS+RIPK+Q+L++D F E+ SI+PDE +A GA
Sbjct: 311 LEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIAIGA 370
Query: 61 AVQAA 65
A QA
Sbjct: 371 AKQAG 375
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 267 bits (685), Expect = 1e-82
Identities = 128/278 (46%), Positives = 179/278 (64%), Gaps = 13/278 (4%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T EE+ S ++ K+++ AE YLG V AVI+VPA F++ QR AT + +AGL VLR+IN
Sbjct: 134 TPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVIN 193
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGL KK NVL+ DLGGGT DVS+L + G+F ++ AG+ LG
Sbjct: 194 EPTAAALAYGLHKKQDVF------NVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLG 247
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAK--RTLSSSTQASIEIDSL 501
G+DF+ R++ + Q+ KY K NK ++RLR A E AK TL ST S+ + L
Sbjct: 248 GQDFNQRLLQYLYQKIYEKYGKVP-DNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLL 306
Query: 502 FEG---VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 558
EG V F +TR FE LN DLF+ + P+E L + +DK ++ +IVLVGGSTRIP
Sbjct: 307 SEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIP 366
Query: 559 KVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 596
++++++ FF GK+ N S++P+ AV G A+QA I+ G
Sbjct: 367 RIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGG 403
Score = 84.8 bits (210), Expect = 2e-17
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+ P+E L + +DK ++ +IVLVGGSTRIP++++++ FF GK+ N S++P+ AV G
Sbjct: 336 LLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF-GKDPNTSVDPELAVVTGV 394
Query: 61 AVQAAILHG 69
A+QA I+ G
Sbjct: 395 AIQAGIIGG 403
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 264 bits (676), Expect = 2e-81
Identities = 110/282 (39%), Positives = 167/282 (59%), Gaps = 16/282 (5%)
Query: 324 TIEEVSSMVLTKMKETAEAYLG-KTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRII 382
++EE+ +M+L K+ AE + V + VITVP YF +QRQA D+ +AGLNVL ++
Sbjct: 110 SVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALV 169
Query: 383 NEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTI----------EDGIFE 432
N+ TAAA+ Y LD++ + + VL +D+G G+ +++ E
Sbjct: 170 NDGTAAALNYALDRRF---ENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIE 226
Query: 433 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK--KDLTTNKRALRRLRTACERAKRTLSS 490
V D LGG +FD R+ +H +EF+ K+K D+ TN RA+ +L RAK LS+
Sbjct: 227 VLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSA 286
Query: 491 STQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVL 550
+++A + I+SL++ +DF T +TRA FEEL ADLF + P++K+L A + I + L
Sbjct: 287 NSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVEL 346
Query: 551 VGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAA 592
+GG+TR+PKVQ+ L + K+L K +N DEA A GAA AA
Sbjct: 347 IGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 79.9 bits (198), Expect = 7e-16
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
P++K+L A + I + L+GG+TR+PKVQ+ L + K+L K +N DEA A GAA
Sbjct: 325 APIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAA 384
Query: 62 VQAA 65
AA
Sbjct: 385 YYAA 388
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 250 bits (640), Expect = 3e-76
Identities = 107/276 (38%), Positives = 167/276 (60%), Gaps = 9/276 (3%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T+ EV+ L ++KE AE +LGK V+ AV++VP +F+D Q +A + AGL VL++I
Sbjct: 113 TVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIP 172
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EP AA +AY + + + +RNV++ D GG DVS++ + G++ + +TA D LG
Sbjct: 173 EPAAALLAYDAGEP--TEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLG 230
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G+ D+ +V HF +EF +K K D TN RAL +LR E K+TLS+ST A+ ++SL E
Sbjct: 231 GDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAE 290
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
G+DF++S+ R RFE L + +FR V ++ A +D I +++LVGG+ PK+
Sbjct: 291 GIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASN 350
Query: 564 LQDFFNGK-------ELNKSINPDEAVAYGAAVQAA 592
L F ++K+++P E VA G A+QA+
Sbjct: 351 LSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
Score = 58.6 bits (142), Expect = 5e-09
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 4 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK-------ELNKSINPDEAV 56
V ++ A +D I +++LVGG+ PK+ L F ++K+++P E V
Sbjct: 318 VTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELV 377
Query: 57 AYGAAVQAA 65
A G A+QA+
Sbjct: 378 ARGCAIQAS 386
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 228 bits (582), Expect = 4e-68
Identities = 112/272 (41%), Positives = 172/272 (63%), Gaps = 2/272 (0%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T E+V++M+LTK+KETAE+ L K V + V++VP ++ D++R++ D+ IAGLN LR++N
Sbjct: 112 TTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMN 171
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
E TA A+AYG+ K+ A RNV+ D+G + VS+ G +V +TA DT LG
Sbjct: 172 ETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLG 231
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLF 502
G FD +VN+F +EF +KYK D+ + RAL RL CE+ K+ +S+ ++ + I+
Sbjct: 232 GRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFM 291
Query: 503 EGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 562
+D ++ R +F E+ DL P+ L AK+ K I+ + +VGG+TRIP V++
Sbjct: 292 NDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKE 351
Query: 563 LLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
+ FF GKE++ ++N DEAVA G A+Q AIL
Sbjct: 352 KISKFF-GKEVSTTLNADEAVARGCALQCAIL 382
Score = 63.5 bits (154), Expect = 1e-10
Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62
P+ L AK+ K I+ + +VGG+TRIP V++ + FF GKE++ ++N DEAVA G A+
Sbjct: 319 PLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFF-GKEVSTTLNADEAVARGCAL 377
Query: 63 QAAIL 67
Q AIL
Sbjct: 378 QCAIL 382
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 223 bits (569), Expect = 2e-66
Identities = 95/267 (35%), Positives = 153/267 (57%), Gaps = 1/267 (0%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
++++M + K+K+T + +++ I VP ++ + QR D+ IAGLN +RI+N+
Sbjct: 112 TQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDV 171
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAA ++YG+ K R V D+G ++ SI+ + G +V TA D H GG
Sbjct: 172 TAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGR 231
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFD + HF EFK KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ V
Sbjct: 232 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDV 291
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
D + ++R EEL L EPV K+L AK+ ++ + ++GG+TRIP +++ +
Sbjct: 292 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 351
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAA 592
+ F GK L+ ++N DEA+A GAA A
Sbjct: 352 EAF-GKPLSTTLNQDEAIAKGAAFICA 377
Score = 66.2 bits (161), Expect = 2e-11
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+A GAA
Sbjct: 315 EPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAA 373
Query: 62 VQAA 65
A
Sbjct: 374 FICA 377
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 216 bits (552), Expect = 9e-64
Identities = 109/272 (40%), Positives = 166/272 (61%), Gaps = 2/272 (0%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
++E++++M+LTK+KETAE L K V++ VI+VP++F D++R++ D+ I GLN LR++N
Sbjct: 112 SVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMN 171
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
+ TA A+ YG+ K+ + R V+ D+G F VS G +V TA D LG
Sbjct: 172 DMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLG 231
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLF 502
G++FD ++V HF EFK KYK D + RAL RL CE+ K+ +SS ST + I+
Sbjct: 232 GKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFM 291
Query: 503 EGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 562
D + R++FEEL ADL + P+ L + + + +VGG+TRIP V++
Sbjct: 292 NDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKE 351
Query: 563 LLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
+ FF GK+++ ++N DEAVA G A+Q AIL
Sbjct: 352 RIAKFF-GKDVSTTLNADEAVARGCALQCAIL 382
Score = 53.0 bits (127), Expect = 3e-07
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62
P+ L + + + +VGG+TRIP V++ + FF GK+++ ++N DEAVA G A+
Sbjct: 319 PLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF-GKDVSTTLNADEAVARGCAL 377
Query: 63 QAAIL 67
Q AIL
Sbjct: 378 QCAIL 382
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 204 bits (521), Expect = 2e-59
Identities = 105/271 (38%), Positives = 170/271 (62%), Gaps = 2/271 (0%)
Query: 325 IEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINE 384
IE+V+ M+L K+KET+E L K V++ VI++P++F D++R++ + +AGLN LR++NE
Sbjct: 113 IEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNE 172
Query: 385 PTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 444
TA A+AYG+ K+ A RNV+ D+G + VS+ G +V +T D +LGG
Sbjct: 173 TTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGG 232
Query: 445 EDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSS-STQASIEIDSLFE 503
+FD +V++F EFK KYK ++ N RAL RL CE+ K+ +S+ ++ + I+
Sbjct: 233 RNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMN 292
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
+D + + RA+FE+L A L P++ + A + + I+ I +VGG+TRIP V++
Sbjct: 293 DLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQ 352
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
+ FF K+++ ++N DEAVA G A+Q AIL
Sbjct: 353 ITSFFL-KDISTTLNADEAVARGCALQCAIL 382
Score = 57.7 bits (139), Expect = 8e-09
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 3 PVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAV 62
P++ + A + + I+ I +VGG+TRIP V++ + FF K+++ ++N DEAVA G A+
Sbjct: 319 PLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCAL 377
Query: 63 QAAIL 67
Q AIL
Sbjct: 378 QCAIL 382
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 195 bits (496), Expect = 7e-54
Identities = 113/299 (37%), Positives = 163/299 (54%), Gaps = 36/299 (12%)
Query: 325 IEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINE 384
I E+++ + +K AE L ++ AVITVPA+FND+ R + IAG VLR+I E
Sbjct: 118 IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAE 177
Query: 385 PTAAAIAYGLDKKVGSAAGSGERNV-LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
PTAAA AYGL+K ++ L++DLGGGTFDVSIL I++GIF+V +T GD LG
Sbjct: 178 PTAAAYAYGLNK--------NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLG 229
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 503
G D D + + +F DL + L+ ++AK TL+ + S D++
Sbjct: 230 GNDIDVVITQYLCNKF------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNI-- 275
Query: 504 GVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL 563
S+ + E+L L T+ ++ L A I ++LVGG+TRIP ++
Sbjct: 276 ------SINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDE 327
Query: 564 LQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 622
L F L+ I+PD+AV +GAA+QA L + LL+DV PLSLG+E GG
Sbjct: 328 LYKAFKVDILS-DIDPDKAVVWGAALQAENL----IAPHTNSLLIDVVPLSLGMELYGG 381
Score = 176 bits (448), Expect = 2e-47
Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 13/288 (4%)
Query: 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQ 76
I ++LVGG+TRIP ++ L F L+ I+PD+AV +GAA+QA L
Sbjct: 308 NIDGVILVGGATRIPLIKDELYKAFKVDILS-DIDPDKAVVWGAALQAENL----IAPHT 362
Query: 77 DLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAM 136
+ LL+DV PLSLG+E GG++ +I RNT IP + FTTY+DNQ G+ + +GER M
Sbjct: 363 NSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREM 422
Query: 137 TKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGR 196
D L +FEL +PP G + EVTF IDA+GIL+VSA EK + + I + + G
Sbjct: 423 AADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHG- 481
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQ 256
+ K +I+ M+ +A K D + + A E+ FN++ + +L +S +E +
Sbjct: 482 IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAI--AELTTLLSESEISI 539
Query: 257 I---LDKCNDVIKWLDSNQLAEK-EEFEDK-QKELEAICNPIITKLYQ 299
I LD + + D + +EF+ K +K ++ N II L +
Sbjct: 540 INSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLK 587
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 104 bits (261), Expect = 9e-24
Identities = 86/340 (25%), Positives = 119/340 (35%), Gaps = 87/340 (25%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQ----RQATKDSGTI---AGL 376
T E++ + L ++K+ AEA LG + VI P +F QA AG
Sbjct: 92 TFEDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGF 151
Query: 377 NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKST 436
+ EP AAA+ Y + E VL+ D+GGGT D S++ +
Sbjct: 152 KDVEFQYEPIAAALDYE-------QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADR 204
Query: 437 AGDT------HLGGEDFDNRMVNHFV----------QEFK------RKYKKDLTT----- 469
D +GG DFD R+ H V + Y DL T
Sbjct: 205 RADILAHSGVRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKIN 264
Query: 470 -------------------NKRALRRLRT------------ACERAKRTLSSSTQASIEI 498
L RL T A E AK LSS + I++
Sbjct: 265 FLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDL 324
Query: 499 DSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIP 558
D F V VTRA FE A V+++L A + I + L GGS+ +P
Sbjct: 325 D--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVP 382
Query: 559 KVQKLLQDFF------NGKELNKSINPDEAVAYGAAVQAA 592
V++ F G +VA G A+ AA
Sbjct: 383 AVRQAFAARFPAARIVEGDAF-------GSVASGLALAAA 415
Score = 35.2 bits (82), Expect = 0.10
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 4 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF------NGKELNKSINPDEAVA 57
V+++L A + I + L GGS+ +P V++ F G +VA
Sbjct: 355 VDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAF-------GSVA 407
Query: 58 YGAAVQAA 65
G A+ AA
Sbjct: 408 SGLALAAA 415
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 81.2 bits (201), Expect = 3e-16
Identities = 71/309 (22%), Positives = 114/309 (36%), Gaps = 51/309 (16%)
Query: 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNA---------VITVPAYFNDSQRQATKDS 370
PG T +V + L + E A L KT N V+TVPA ++D+ +QA +++
Sbjct: 103 PPGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREA 162
Query: 371 GTIAGLNV-------LRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSI 423
AGL L I+ EP AAA+ + G+ L+ D GGGT D+++
Sbjct: 163 AIKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDG-FLVCDAGGGTVDLTV 221
Query: 424 LTIEDGI-FEVK-STAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT----NKRALRRL 477
+ +K AG L G F +R F + K + + + L
Sbjct: 222 YEVTSVEPLRLKELAAGSGGLCGSTFVDR---AFEELLKERLGELFYELPSKSPALWLIL 278
Query: 478 RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELN----------ADLFRGT 527
E KR+ + I S N LF
Sbjct: 279 MRFFETIKRSFGGTDN-DTNIVLPGS---LALSKKDPERGIRNGELKISGEDMKSLFDPV 334
Query: 528 MEPVEKSLRDAKMDKAQIHD----IVLVGGSTRIPKVQKLLQDFFNGKELNKSI----NP 579
+E + + + ++++A+ D I LVGG P ++ L++ F + +P
Sbjct: 335 IEEIIDLIEE-QLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDP 391
Query: 580 DEAVAYGAA 588
AV GA
Sbjct: 392 QLAVVRGAV 400
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 68.2 bits (168), Expect = 2e-12
Identities = 70/252 (27%), Positives = 117/252 (46%), Gaps = 47/252 (18%)
Query: 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411
VI VP+ + +R+A D+ AG + +I EP AAAI GLD + G+ ++
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD--IFEPKGN-----MV 146
Query: 412 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNK 471
D+GGGT +++++++ GI KS +GG+DFD ++ + +RKY
Sbjct: 147 VDIGGGTTEIAVISL-GGIVVSKS----IRVGGDDFDEAIIRY----VRRKYN------- 190
Query: 472 RALRRL----RTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGT 527
L RTA E K + S+ E +G D T + R E+ ++ R
Sbjct: 191 -----LLIGERTA-EEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREA 242
Query: 528 M-EPVEKSLRDAK--MDK------AQIHD--IVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
+ EP+++ + K ++K A I D IVL GG + + +L+ + G + +
Sbjct: 243 LKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVA 301
Query: 577 INPDEAVAYGAA 588
+P VA GA
Sbjct: 302 EDPLTCVAKGAG 313
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 57.8 bits (141), Expect = 7e-09
Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 55/258 (21%)
Query: 350 NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNV 409
VI VP+ + +R+A +++ AG + +I EP AAAI GL V G+
Sbjct: 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--VTEPVGN----- 154
Query: 410 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTT 469
++ D+GGGT +V+++++ GI +S + G++ D +V + +RKY
Sbjct: 155 MVVDIGGGTTEVAVISL-GGIVYSESIR----VAGDEMDEAIVQY----VRRKYN----- 200
Query: 470 NKRALRRL----RTACERAKRTLSSSTQA----SIEIDSLFEGVDFYTSVTRARFEELNA 521
L RTA E K + S+ S+E+ G D T + E+++
Sbjct: 201 -------LLIGERTA-EEIKIEIGSAYPLDEEESMEV----RGRDLVTG--LPKTIEISS 246
Query: 522 DLFRGTMEP--------VEKSLRDAKMDKAQ-IHD--IVLVGGSTRIPKVQKLLQDFFNG 570
+ R + V+ L + A I D IVL GG + + KLL + G
Sbjct: 247 EEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-G 305
Query: 571 KELNKSINPDEAVAYGAA 588
++ + +P VA G
Sbjct: 306 LPVHIAEDPLTCVARGTG 323
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 53.6 bits (129), Expect = 8e-08
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 329 SSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAA 388
+ ++ ++K+T E LG +++A +P + + + AG+ VL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 389 AIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 442
A + N + D+GGGT +SIL I+ G TH+
Sbjct: 102 AAVLQIK------------NGAVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 54.0 bits (130), Expect = 1e-07
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411
VI VP+ +R+A K+S AG + +I EP AAAI GL V GS ++
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL--PVEEPTGS-----MV 154
Query: 412 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 463
D+GGGT +V+++++ GI +S +GG++FD ++N+ +R Y
Sbjct: 155 VDIGGGTTEVAVISL-GGIVVSRS----IRVGGDEFDEAIINY----IRRTY 197
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 51.8 bits (124), Expect = 4e-07
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 332 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIA 391
++ ++K+T E LG ++A +P + + + AGL VL +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 392 YGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL 442
LD + + D+GGGT +SI+ I+ G TH+
Sbjct: 137 LQLD------------DGGVVDIGGGTTGISIVKKGKVIYSADEPTGGTHM 175
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 51.8 bits (125), Expect = 6e-07
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 16/116 (13%)
Query: 349 SNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN 408
VI VP+ + +R+A K++ AG + +I EP AAAI GL V G+
Sbjct: 94 PRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLP--VEEPTGN---- 147
Query: 409 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 464
++ D+GGGT +V+++++ GI KS + G++ D ++ + ++KY
Sbjct: 148 -MVVDIGGGTTEVAVISL-GGIVTSKS----VRVAGDEMDEAIIKY----IRKKYN 193
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 48.0 bits (114), Expect = 3e-06
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 331 MVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGT----------IAGLNVLR 380
L ++ + A L + IT P R+ G +
Sbjct: 45 EALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVA 104
Query: 381 IINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 437
++N+ AAA+A GL K E VL+ DLG GT ++I +EDG V +
Sbjct: 105 VVNDAVAAALAEGLFGK-------EEDTVLVVDLGTGTTGIAI--VEDGKGGVGAAG 152
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 49.5 bits (119), Expect = 3e-06
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 16/113 (14%)
Query: 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411
+I +P +++A +++ AG + +I EP AAAI GLD + +G+ ++
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGN-----MV 151
Query: 412 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 464
D+GGGT D+++L++ GI S + G+ FD ++ + ++KYK
Sbjct: 152 VDIGGGTTDIAVLSLG-GIVTSSS----IKVAGDKFDEAIIRY----IRKKYK 195
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 48.8 bits (117), Expect = 7e-06
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 521 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 575
ADL R +E V +LRD+ + I I L+GG + P +++L D F G ++
Sbjct: 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDV 420
Query: 576 SINPDEAVAYGAAVQAAILHGDKS 599
+E A GAA+ AA G+K
Sbjct: 421 P-EGEEGPALGAAILAAWALGEKD 443
Score = 43.5 bits (103), Expect = 4e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 1 MEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 55
+E V +LRD+ + I I L+GG + P +++L D F G ++ +E
Sbjct: 369 LEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEG 426
Query: 56 VAYGAAVQAAILHGDKS 72
A GAA+ AA G+K
Sbjct: 427 PALGAAILAAWALGEKD 443
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 47.1 bits (113), Expect = 1e-05
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 36/123 (29%)
Query: 332 VLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQAT--KDSGTI------AGLNVLRIIN 383
++ ++K T E LG+ +++A +P T D I AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA----GD 439
EPTAAA G+D + D+GGGT +SIL +DG +V +A G
Sbjct: 124 EPTAAAAVLGIDNGA------------VVDIGGGTTGISIL--KDG--KVVYSADEPTGG 167
Query: 440 THL 442
TH+
Sbjct: 168 THM 170
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 45.3 bits (108), Expect = 6e-05
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 16/113 (14%)
Query: 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411
VI VP+ D +R+A K++ AG + +I EP AAAI GL + GS ++
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP--IMEPTGS-----MV 157
Query: 412 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 464
D+GGGT +V+++++ GI V S++ +GG+ D ++ ++KY
Sbjct: 158 VDIGGGTTEVAVISL-GGI--VSSSS--VRVGGDKMDEAIIV----YVRKKYN 201
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 44.7 bits (107), Expect = 9e-05
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411
VI VP+ + +R+A ++S AG + +I EP AAAI GL V GS ++
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLP--VTEPTGS-----MV 152
Query: 412 FDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKY 463
D+GGGT +V+++++ GI KS +GG+ FD ++N+ +R Y
Sbjct: 153 VDIGGGTTEVAVISL-GGIVYSKS----VRVGGDKFDEAIINY----VRRNY 195
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 42.5 bits (101), Expect = 8e-04
Identities = 32/158 (20%), Positives = 71/158 (44%), Gaps = 39/158 (24%)
Query: 199 KEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDE-------------KL 245
+E+ +R++ +A+K +AE K++A++ AK + +++ E E +L
Sbjct: 37 EEEAKRILEEAKK-EAEAIKKEALLEAKEEI----HKLRNEFEKELRERRNELQKLEKRL 91
Query: 246 KDKISSAER-TQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGAP 304
K + +R ++L+K + ++ + +++E E K++ELE + + +L + G
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL- 150
Query: 305 GGFPGAPGAAPGAGAGPGPTIEEVSSMVLTKMKETAEA 342
T EE ++L K++E A
Sbjct: 151 -------------------TAEEAKEILLEKVEEEARH 169
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 41.9 bits (99), Expect = 0.001
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 521 ADLFRGTMEPVEKSLRDAKMDK-----AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 575
A+L R +E LR +D + +I L+GG + P ++++ D N +
Sbjct: 367 ANLARAAVEGATFGLRYG-LDLLRALGLKSTEIRLIGGGAKSPAWRQIIADIMNAE---- 421
Query: 576 SINP--DEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 611
+ P +EA A GAA+QAA E+ D+ L ++
Sbjct: 422 VVVPDTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
Score = 38.4 bits (90), Expect = 0.012
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINP--DEAVAYGAAVQAAILHGDKSE 73
+ +I L+GG + P ++++ D N + + P +EA A GAA+QAA E
Sbjct: 393 LKSTEIRLIGGGAKSPAWRQIIADIMNAE----VVVPDTEEAAALGAAIQAAWCL--TGE 446
Query: 74 EVQDLLLLDVT 84
+ D+ L ++
Sbjct: 447 DGADVALAELC 457
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 41.0 bits (97), Expect = 0.002
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 20/107 (18%)
Query: 328 VSSMVLTKMKETAEAYLGKTVSNAVITVPAYFN-----DSQRQAT---KDSGTIAGLNVL 379
V +M+L +K+ AEA L ++ AVI P F ++ RQA + + AG +
Sbjct: 130 VCAMML-HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDV 188
Query: 380 RIINEPTAAAIAY--GLDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 424
EP AA + + L + E+ VL+ D+GGGT D S+L
Sbjct: 189 EFQFEPVAAGLDFEATLTE---------EKRVLVVDIGGGTTDCSML 226
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 40.7 bits (95), Expect = 0.002
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVS--NAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINE 384
++++ +L ++ + A +G T N V+ P+ +R+A D+ G + +I E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 385 PTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 444
P AAAI G D V NV++ D+GGGT +V+I++ G+ S +GG
Sbjct: 135 PVAAAI--GADLPVDEPVA----NVVV-DIGGGTTEVAIISF-GGVVSCHS----IRIGG 182
Query: 445 EDFDNRMVNHFVQEF 459
+ D +V+ +++
Sbjct: 183 DQLDEDIVSFVRKKY 197
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 38.6 bits (91), Expect = 0.010
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 521 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
A L R +E V SLRD+ + I I+ +GG R P ++ D ++
Sbjct: 364 AHLTRAVLEGVAFSLRDSLEILRELGVPIDRIIAIGGGARSPLWLQIQADVLG-LPVDTL 422
Query: 577 INPDEAVAYGAAVQAAI 593
+E A GAA+ AA+
Sbjct: 423 -KGEEGPALGAAILAAV 438
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 38.4 bits (90), Expect = 0.011
Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 62/237 (26%)
Query: 374 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGER--NVLIFDLGGGTFDVSILTIEDGIF 431
AGL V I+ EP A+A+A E+ V + D+GGGT D++I +
Sbjct: 177 AGLKVDNIVLEPLASALA---------VLTEDEKELGVALIDIGGGTTDIAIYK-NGALR 226
Query: 432 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSS 491
+GG +H ++ + K ER K S+
Sbjct: 227 YTGVIP----VGG--------DHVTKDIAKGLKTPFEE-----------AERIKIKYGSA 263
Query: 492 TQASIEIDSLFE--GVD----------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAK 539
+ + + E V + + AR EE +E V+ LR +
Sbjct: 264 LISLADDEETIEVPSVGSDIPRQVTRSELSEIIEARVEE--------ILELVKAELRKSG 315
Query: 540 MDKAQIHDIVLVGGSTRIPKVQKLLQDFF-----NGKELNKSINPDEAV--AYGAAV 589
+ +VL GG ++P + +L + F G LN D A A+ AV
Sbjct: 316 LPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 37.8 bits (88), Expect = 0.014
Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 41/207 (19%)
Query: 380 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 439
++ E A+ L + G ++ VL+ D+GGGT D ++ ++G S+
Sbjct: 144 KVFPEG-VGALFDLLLDEGGLLK---DKKVLVIDIGGGTTD--VVVFDNGKPVESSS--G 195
Query: 440 THLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEID 499
+ G + + +E ++Y DL+ EI+
Sbjct: 196 SLELG---VSDLYEAIAKELNKEYGIDLSDE--------------------------EIE 226
Query: 500 SLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 559
+ E+ + E + L++ + + + ++LVGG + K
Sbjct: 227 EILRNGKIKNYGKEEDITEIIEEAAEEYAEKILNELKE-FLGLSDVDKVILVGGGAILLK 285
Query: 560 VQKLLQDFFNGKELNKSINPDEAVAYG 586
+ L + F L +P A A G
Sbjct: 286 -EYLKELFPENVVLVD--DPQFANARG 309
>gnl|CDD|117872 pfam09330, Lact-deh-memb, D-lactate dehydrogenase, membrane
binding. Members of this family are predominantly found
in prokaryotic D-lactate dehydrogenase, forming the
cap-membrane-binding domain, which consists of a large
seven-stranded antiparallel beta-sheet flanked on both
sides by alpha-helices. They allow for membrane
association.
Length = 291
Score = 37.2 bits (87), Expect = 0.022
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 6 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEA-------- 55
K +RD + DK + H ++ + G I + +K L+++F E P+E
Sbjct: 102 KRMRDYR-DKYEHHLLLKMSGDG-IEEARKYLKEYFADAEDGDYFECTPEEGKKAFLHRF 159
Query: 56 VAYGAAVQAAILHGDKSEEVQDLLLLDV 83
A GAA++ +H +EV+D++ LD+
Sbjct: 160 AAAGAAIRYRAVH---RDEVEDIVALDI 184
Score = 37.2 bits (87), Expect = 0.022
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 533 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEA-------- 582
K +RD + DK + H ++ + G I + +K L+++F E P+E
Sbjct: 102 KRMRDYR-DKYEHHLLLKMSGDG-IEEARKYLKEYFADAEDGDYFECTPEEGKKAFLHRF 159
Query: 583 VAYGAAVQAAILHGDKSEEVQDLLLLDV 610
A GAA++ +H +EV+D++ LD+
Sbjct: 160 AAAGAAIRYRAVH---RDEVEDIVALDI 184
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 37.4 bits (87), Expect = 0.026
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 521 ADLFRGTMEPVEKSLRDA-----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 575
A L R +E V +L D ++ + +VGG R P ++L D G +
Sbjct: 373 AHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVV 431
Query: 576 SINPDEAVAYGAAVQAAI 593
+EA A G A AA
Sbjct: 432 P-EVEEAGALGGAALAAA 448
Score = 32.0 bits (73), Expect = 1.1
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 11 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66
++ + +VGG R P ++L D G + +EA A G A AA
Sbjct: 395 EELGGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVP-EVEEAGALGGAALAAA 448
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 36.9 bits (85), Expect = 0.036
Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 97/326 (29%)
Query: 333 LTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGL------NVLRIINEPT 386
L ++K+ + + L K V+TVPA + +Q +++ +AGL L I EP
Sbjct: 125 LQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPE 184
Query: 387 AAAI---------------------AYGLDKKVGSA--------------------AGSG 405
AA+I + + S+ +G+G
Sbjct: 185 AASIYCRKLRLHQLTDLSQRAVTNFDIDGSRSIDSSFRQAREQLRRSRHSRTFLVESGTG 244
Query: 406 E--------RNVLIFDLGGGTFDVSILTIED--GIFE--VKSTAGDTHLGGED--FDNRM 451
E ++ D GGGT D+++ IE G + K++ G G D F+ +
Sbjct: 245 ELWSEMQAGDRYIVADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETML 304
Query: 452 VNHFVQEFKRKYKKDLTTNKR--ALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFY- 508
F ++F +K KR A L A E KRT + ++ I F +DFY
Sbjct: 305 CQIFGEDFIDTFKA-----KRPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYR 359
Query: 509 -------------TSVT----------RARFEELNADLFRGTMEPVEKSLRDAKMDKAQI 545
+SV R E +N +LF+ T+ + + + + M K ++
Sbjct: 360 KHRGQNVETALRKSSVNFVKWSSQGMLRMSTEAMN-ELFQPTINNIIQHI-ENLMQKPEV 417
Query: 546 HDI---VLVGGSTRIPKVQKLLQDFF 568
+ LVGG P +Q+ +Q+
Sbjct: 418 KGVKFLFLVGGFAESPMLQRAVQNAL 443
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 34.6 bits (80), Expect = 0.13
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 399 GSAAG--------SGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 437
G AAG +G +N ++ D+GG + DVS I DG E+ S
Sbjct: 61 GPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVS--LIIDGEPEISSEG 105
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 35.0 bits (81), Expect = 0.13
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 521 ADLFRGTMEPVEKSLRD--AKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
L R +E V SLRD + I L+GG + +++L D G +
Sbjct: 365 GHLARAVLEGVAFSLRDCLEVLHGMGTAPQRIKLIGGGAKSELWRQILADVL-GVPVELP 423
Query: 577 INPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 614
N + A + GAA+ AA+ GD ++ + + P+
Sbjct: 424 ANAEGA-SVGAALLAAVGAGDFADLNEAARTVRQLPVI 460
Score = 31.6 bits (72), Expect = 1.4
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 1 MEPVEKSLRD--AKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 56
+E V SLRD + I L+GG + +++L D G + N + A
Sbjct: 372 LEGVAFSLRDCLEVLHGMGTAPQRIKLIGGGAKSELWRQILADVL-GVPVELPANAEGA- 429
Query: 57 AYGAAVQAAILHGDKSEEVQDLLLLDVTPLS 87
+ GAA+ AA+ GD ++ + + P+
Sbjct: 430 SVGAALLAAVGAGDFADLNEAARTVRQLPVI 460
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 35.3 bits (81), Expect = 0.15
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 188 ITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDE--KL 245
I I +R R +I++ +ND E E + +SY +E+E L
Sbjct: 580 IDIETNRSR--SNEIKKQLNDLESRLQE------IEIGFPDDKSYIDKSIREIENEANNL 631
Query: 246 KDKISSAERTQIL-DKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGA 303
+K + + +IL +K I Q+AE + KE+ + N I L ++ A
Sbjct: 632 NNKYNEIQENKILIEKLRGKIDNYKK-QIAEIDSIIPDLKEITSRINDIEDNLKKSRKA 689
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 34.5 bits (80), Expect = 0.19
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 501 LFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTR 556
+F G+ TRA L+R +E V +LR A+ ++ +V VGG +
Sbjct: 358 VFFGLTLGH--TRA-------HLYRAVLEGVAYALRHILEIAEEAGVKVSRVVAVGGGAK 408
Query: 557 IPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 593
++ D G + N A + G A+ AA+
Sbjct: 409 SRLWMQIKADVL-GLPVVTPENTVGA-SLGDALLAAV 443
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2. This
model describes archaeal and eukaryotic orthologs of
bacterial IF-2. Like IF-2, it helps convey the initiator
tRNA to the ribosome, although the initiator is
N-formyl-Met in bacteria and Met here. This protein is
not closely related to the subunits of eIF-2 of
eukaryotes, which is also involved in the initiation of
translation. The aIF-2 of Methanococcus jannaschii
contains a large intein interrupting a region of very
strongly conserved sequence very near the amino end; the
alignment generated by This model does not correctly
align the sequences from Methanococcus jannaschii and
Pyrococcus horikoshii in this region [Protein synthesis,
Translation factors].
Length = 590
Score = 33.6 bits (77), Expect = 0.36
Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 28/145 (19%)
Query: 162 EVTFDIDANGIL-------NVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKA 214
E+ D D G++ ++ A+ D G +SK D V +A K
Sbjct: 344 EIKIDTDEEGVVVKADTLGSLEALVNELRDMGVPIKKADIGDVSKRD----VVEAGIAKQ 399
Query: 215 EDEKQKAVITAKNSLESYCFNMK--STMEDEKLKDKISSAERTQILDKCNDVIKWLDSNQ 272
ED A+I FN+K E E K I I + +W+
Sbjct: 400 EDRVYGAIIA---------FNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWI---- 446
Query: 273 LAEKEEFEDKQKELEAICNPIITKL 297
E E E K+K +EAI P +L
Sbjct: 447 --EGIEEEKKRKWMEAIIKPAKIRL 469
>gnl|CDD|189968 pfam01391, Collagen, Collagen triple helix repeat (20 copies).
Members of this family belong to the collagen
superfamily. Collagens are generally extracellular
structural proteins involved in formation of connective
tissue structure. The alignment contains 20 copies of
the G-X-Y repeat that forms a triple helix. The first
position of the repeat is glycine, the second and third
positions can be any residue but are frequently proline
and hydroxyproline. Collagens are post translationally
modified by proline hydroxylase to form the
hydroxyproline residues. Defective hydroxylation is the
cause of scurvy. Some members of the collagen
superfamily are not involved in connective tissue
structure but share the same triple helical structure.
Length = 60
Score = 29.4 bits (67), Expect = 0.75
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 300 AGGAPG--GFPGAPGAA--PGAGAGPGP 323
G PG G PG PG PG PG
Sbjct: 26 PPGPPGPPGPPGPPGPPGPPGPPGPPGA 53
Score = 29.4 bits (67), Expect = 0.89
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 302 GAPG--GFPGAPGAAPGAGAGPGP 323
G PG G PG PG PG PGP
Sbjct: 10 GPPGPPGPPGPPGP-PGPPGPPGP 32
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 32.5 bits (75), Expect = 0.91
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 6 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEA--------V 56
K ++D + DK + H ++ + G I + + L+++F E + P+E
Sbjct: 372 KRMKDYR-DKYEHHLLLKMSGDG-IEEARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFA 429
Query: 57 AYGAAVQAAILHGDKSEEVQDLLLLDV 83
A GAA++ +H D EV+D+L LD+
Sbjct: 430 AAGAAIRYRAVHRD---EVEDILALDI 453
Score = 32.5 bits (75), Expect = 0.91
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 533 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK-SINPDEA--------V 583
K ++D + DK + H ++ + G I + + L+++F E + P+E
Sbjct: 372 KRMKDYR-DKYEHHLLLKMSGDG-IEEARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFA 429
Query: 584 AYGAAVQAAILHGDKSEEVQDLLLLDV 610
A GAA++ +H D EV+D+L LD+
Sbjct: 430 AAGAAIRYRAVHRD---EVEDILALDI 453
>gnl|CDD|223911 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].
Length = 1009
Score = 32.6 bits (75), Expect = 0.96
Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 19/150 (12%)
Query: 276 KEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIE-EVSSMVLT 334
K E K+ +AI + +L + A F P A G G G G + L
Sbjct: 613 KPWSERKENSAQAIIARLTKELAKIPDA-TVFAFTPPAVDGLGQGSGFPFQLRDRGGDLE 671
Query: 335 KMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 394
+++ A L K + ++ V + Q +++ R A A G+
Sbjct: 672 ALRQAANQLLEKANQSPLLNVRSDLLPDTPQLQ--------VDIDR------DKAAALGV 717
Query: 395 DKK-VGSAAGS--GERNVLIFDLGGGTFDV 421
+ + S G V F G + V
Sbjct: 718 SLQDIAQTLQSALGGTYVNDFRDDGRVYKV 747
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 32.3 bits (73), Expect = 1.2
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 193 DRGRLSKEDIERMVNDAEKY----KAEDEKQKAVITAKNSLESYCFNMKSTMED-----E 243
+ +++ + +A K K EK +A+ + N E+Y MK ++ E
Sbjct: 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE 333
Query: 244 KLKDKISSAE-RTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELE 287
KLK +I E + L D + Q E+FE +E E
Sbjct: 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQERE 378
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 31.8 bits (73), Expect = 1.3
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 521 ADLFRGTMEPVE---KSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 575
ADL R +E V + L +A + ++ ++ VGG R +++ D G+ + +
Sbjct: 386 ADLLRAVLEGVALNLRWLLEAVERFLGRRLGELRFVGGGARSDLWCQIIADVL-GRPIRR 444
Query: 576 SINPDEAVAYGAAVQAAI 593
+P+EA A GAA AA+
Sbjct: 445 VEDPEEAGARGAAAIAAV 462
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.9 bits (72), Expect = 1.5
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 185 ENKITITNDRGRLSKEDIERMVNDAEKY-------KAEDEKQKAVITAKNSLESYCFNMK 237
E +I + + R +E+IE + EK E+++++ + +
Sbjct: 237 EERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296
Query: 238 STMEDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELE 287
++ E LK + + + L + +K L+ EKEE E+ +KEL+
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELK 346
>gnl|CDD|188543 TIGR04028, SBP_KPN_01854, ABC transporter substrate binding
protein, KPN_01854 family. Members of this protein
family are ABC transporter substrate-binding proteins
related to KPN_01854 from Klebsiella pneumoniae, and
occur in both Gram-positive and Gram-negative species.
This transport protein family is closely associated with
a putative FMN-dependent luciferase-like monooxygenase
of unknown function (TIGR04027), as well as with the
other proteins of its transporter complex [Transport and
binding proteins, Unknown substrate].
Length = 509
Score = 31.6 bits (72), Expect = 1.5
Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 31/127 (24%)
Query: 521 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN-- 578
ADL R P EK + D + TR +N S
Sbjct: 225 ADLARQIEAPDEKQVEDQGFA--------IYAAPTR---------------GVNNSFAFR 261
Query: 579 PDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI--ETAGGFELTS----IPPAT 632
D + V+ A++H +E+ D L D PL+ + TA G+ S P
Sbjct: 262 FDNPLLADIRVRQALIHATDRKEIVDTLFSDSYPLATSVLASTALGYVDLSDKYTFDPEK 321
Query: 633 SRLCLDE 639
+ LDE
Sbjct: 322 AAALLDE 328
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 30.2 bits (68), Expect = 1.9
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 197 LSKEDIERMVNDAEKYKAEDE--KQKAVITAKN--SLESYCFNMKSTMED--EKLKDKIS 250
+S+E+ E ++ +AE KAE E K K A++ LE ++S E+ ++L++K
Sbjct: 35 MSEENQELVILEAENSKAEVETLKTKIEEMAESLKDLELDLVTVRSEKENLTKQLQEK-- 92
Query: 251 SAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKE 285
ER L+K N + N L EKE+ + + KE
Sbjct: 93 -QERVSELEKLNSSTE----NLLEEKEQEKIQMKE 122
>gnl|CDD|223223 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 31.2 bits (71), Expect = 2.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 398 VGSAAGSGER--NVLIFDLGGGTFDVSILTIEDGIFEVKSTA 437
VG+A +G + N ++FD+GG + DV+ I DG E+ S
Sbjct: 267 VGAAYLTGLKAGNAIVFDMGGTSTDVA--LIIDGEPEISSET 306
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.2 bits (71), Expect = 2.2
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 184 KENKITITNDRGRLSKEDIERMVNDAEKYKAE-DEKQKAVITAKNSLESYCFNMKSTMED 242
KE + L+ E +E+ + + EK K E +E+ + L+ +K +E+
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
Query: 243 -EKLKDK-------ISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEA 288
+K K K ++ R ++L++ +K E +E E+K+++L
Sbjct: 431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 30.0 bits (68), Expect = 2.7
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 488 LSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHD 547
LSS T + +L EG+ R E L A +D+
Sbjct: 110 LSSPTTLANLYRALLEGLAL---ALRQILEALAEL--------------GAPIDR----- 147
Query: 548 IVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 593
I+ GG +R P + +LL D G+ + + EA A GAA+ AA+
Sbjct: 148 IIASGGGSRNPLLLQLLADAL-GRPV-EVPETAEATALGAALLAAV 191
>gnl|CDD|236642 PRK10030, PRK10030, hypothetical protein; Provisional.
Length = 197
Score = 29.7 bits (67), Expect = 4.4
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 180 KSTGKENKITITNDRGRLSKEDIERMVNDAEKY 212
+ G++ K + LS E +++ A++Y
Sbjct: 78 IAHGEKGKYVVRRLENGLSVEQQQKLAQTAKRY 110
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 30.2 bits (68), Expect = 4.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 84
L +S+N DEA+ Y AV A + D++E +D L LD T
Sbjct: 901 LMRSLN-DEAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
Score = 30.2 bits (68), Expect = 4.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 573 LNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 611
L +S+N DEA+ Y AV A + D++E +D L LD T
Sbjct: 901 LMRSLN-DEAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus.
This family represents the C-terminal region of
merozoite surface protein 1 (MSP1) which are found in a
number of Plasmodium species. MSP-1 is a 200-kDa protein
expressed on the surface of the P. vivax merozoite.
MSP-1 of Plasmodium species is synthesised as a
high-molecular-weight precursor and then processed into
several fragments. At the time of red cell invasion by
the merozoite, only the 19-kDa C-terminal fragment
(MSP-119), which contains two epidermal growth
factor-like domains, remains on the surface. Antibodies
against MSP-119 inhibit merozoite entry into red cells,
and immunisation with MSP-119 protects monkeys from
challenging infections. Hence, MSP-119 is considered a
promising vaccine candidate.
Length = 574
Score = 30.3 bits (68), Expect = 4.6
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 300 AGGAPGGFPGAPGAAPGAGAGPGPTIEEV--SSMVLTKMKETAEAYLGKTVSNAVITVPA 357
A +P A + +G+ PT V T++++ + ++++ +P
Sbjct: 279 AAPSPLSVRPAGSSGSASGSTQIPTSGSVLGPGAAATELQQVVQLQNYDEEDDSLVVLPI 338
Query: 358 YFND 361
+ ND
Sbjct: 339 FGND 342
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 30.0 bits (68), Expect = 4.8
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 498 IDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG 553
I S G FY D+ R +E + R ++K + IV++GG
Sbjct: 339 IRSEIAGGAFY----GLTDTTSQEDITRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGG 394
Query: 554 STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 591
+R +L GK + ++ E VA GAA+ A
Sbjct: 395 GSRNKLWLQLKASVL-GKPIE-VLDEAELVALGAALLA 430
Score = 29.7 bits (67), Expect = 6.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 64
+ IV++GG +R +L GK + ++ E VA GAA+ A
Sbjct: 385 EGSRIVVIGGGSRNKLWLQLKASVL-GKPIE-VLDEAELVALGAALLA 430
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 29.9 bits (68), Expect = 4.9
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 374 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN--VLIFDLGGGTFDVSILT 425
GL V I+ A+AIA L + E+ V + D+GGGT D+++ T
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED--------EKELGVCLIDIGGGTTDIAVYT 214
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 29.7 bits (67), Expect = 5.0
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 369 DSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE- 427
DS TI ++V+ P + + + K + S LI DLGG T DV+ + +
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESL-----LIVDLGGTTLDVAHVRGQL 185
Query: 428 DGIFEVKSTAGDTHLG 443
+GI ++ GD+ +G
Sbjct: 186 EGISKIH---GDSRIG 198
>gnl|CDD|216996 pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component.
This family consists of various 1,3-beta-glucan synthase
components including Gls1, Gls2 and Gls3 from yeast.
1,3-beta-glucan synthase EC:2.4.1.34 also known as
callose synthase catalyzes the formation of a
beta-1,3-glucan polymer that is a major component of the
fungal cell wall. The reaction catalyzed is:-
UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP +
{(1,3)-beta-D-glucosyl}(N+1).
Length = 818
Score = 30.1 bits (68), Expect = 5.3
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 202 IERMVNDAEKYKAEDEKQKAVITAK-NSLESYCFNMKSTMEDEKLKDKISSAERTQIL 258
I D+E+ + ++ +K + L YC KS + L+ +I ++ R+Q L
Sbjct: 87 ILAEETDSEEGTTKSRDERDWAKSKIDDLPFYCIGFKSAAPEYTLRTRIWASLRSQTL 144
>gnl|CDD|153311 cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast
Sorting Nexin Vps5p. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions. Sorting
nexins (SNXs) are Phox homology (PX) domain containing
proteins that are involved in regulating membrane
traffic and protein sorting in the endosomal system.
SNXs differ from each other in their lipid-binding
specificity, subcellular localization and specific
function in the endocytic pathway. A subset of SNXs also
contain BAR domains. The PX-BAR structural unit
determines the specific membrane targeting of SNXs.
Vsp5p is the yeast counterpart of human SNX1 and is part
of the retromer complex, which functions in the
endosome-to-Golgi retrieval of vacuolar protein sorting
receptor Vps10p, the Golgi-resident membrane protein
A-ALP, and endopeptidase Kex2. BAR domains form dimers
that bind to membranes, induce membrane bending and
curvature, and may also be involved in protein-protein
interactions.
Length = 216
Score = 29.2 bits (66), Expect = 6.2
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 200 EDIERMVNDAEKYKAEDEKQKAVITAKNS----LESYCFNMKSTMED--EKLKDKISSAE 253
++ + EK K + + Q+ + + S E +K E+ E +K ++ E
Sbjct: 122 SELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFE 181
Query: 254 RTQILDKCNDVIKWLDSNQLAEKE 277
R ++ D N V +L+S ++KE
Sbjct: 182 RERVEDFRNSVEIYLESAIESQKE 205
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 29.5 bits (66), Expect = 6.7
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 169 ANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNS 228
N + N K + K+ T +R ++ +E ND K K + K + + + +S
Sbjct: 13 KNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSS 72
Query: 229 LE 230
E
Sbjct: 73 EE 74
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 29.4 bits (66), Expect = 9.1
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 300 AGGAPGGFPGAPGAAPGAGAGPGPT 324
GGAPGG G P GA PG
Sbjct: 364 GGGAPGG--GVPARVAGAVPAPGAR 386
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 29.3 bits (66), Expect = 9.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 107 IPTKQTQTFTTYSDNQPGVLIQVY 130
+PTK +FTT NQ G L+ VY
Sbjct: 997 VPTKFGISFTTKFMNQAGALVHVY 1020
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.367
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,179,263
Number of extensions: 3628432
Number of successful extensions: 3650
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3447
Number of HSP's successfully gapped: 146
Length of query: 714
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 610
Effective length of database: 6,324,786
Effective search space: 3858119460
Effective search space used: 3858119460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.1 bits)