RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5547
(714 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 678 bits (1751), Expect = 0.0
Identities = 265/297 (89%), Positives = 282/297 (94%), Gaps = 5/297 (1%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EEVSSMVLTKMKE AEAYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIINEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAAIAYGLDKK ERNVLIFDLGGGTFDVSILTI GIFEVKSTAGDTHLGGE
Sbjct: 177 TAAAIAYGLDKK-----VGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGE 231
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFDNRMVNHF+ EFKRK+KKD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+
Sbjct: 232 DFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI 291
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
DFYTS+TRARFEELNADLFRGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQ
Sbjct: 292 DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 351
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 622
DFFNGKELNKSINPDEAVAYGAAVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGG
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGG 408
Score = 538 bits (1388), Expect = 0.0
Identities = 217/241 (90%), Positives = 233/241 (96%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGA
Sbjct: 314 LDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGA 373
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
AVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSD
Sbjct: 374 AVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSD 433
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQPGVLIQVYEGERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNVSA++K
Sbjct: 434 NQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDK 493
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
STGKENKITITND+GRLSKEDIERMV +AEKYKAEDEKQ+ +++KNSLESY FNMK+T+
Sbjct: 494 STGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553
Query: 241 E 241
E
Sbjct: 554 E 554
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 633 bits (1635), Expect = 0.0
Identities = 237/272 (87%), Positives = 254/272 (93%), Gaps = 3/272 (1%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+SSMVLTKMKE AEAYLG V +AVITVPAYFNDSQRQATKD+GTI GLNVLRIINEP
Sbjct: 136 EEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEP 195
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAAIAYGLDKK + GE+NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE
Sbjct: 196 TAAAIAYGLDKKGCA---GGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 252
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFDNRMV+H +EFKRK+KKD+ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EGV
Sbjct: 253 DFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGV 312
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
DFYTS+TRARFEELNADLFRGT+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQ
Sbjct: 313 DFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQ 372
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAAILHGD 597
DFFNGKELNKSINPDEAVAYGAAVQAAIL GD
Sbjct: 373 DFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
Score = 170 bits (433), Expect = 8e-47
Identities = 62/70 (88%), Positives = 67/70 (95%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EPVEK+LRDAK+DK QI +IVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGA
Sbjct: 335 LEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGA 394
Query: 61 AVQAAILHGD 70
AVQAAIL GD
Sbjct: 395 AVQAAILIGD 404
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 630 bits (1627), Expect = 0.0
Identities = 165/269 (61%), Positives = 217/269 (80%), Gaps = 6/269 (2%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
EE+S M+L KMK+ AE YLG V++AV+TVPAYFND+QRQATKD+GTIAGLNVLRI+NEP
Sbjct: 131 EEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEP 190
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAAAIAYGLDK E ++++DLGGGTFDVS+L+IE+G+FEV++T+GDTHLGGE
Sbjct: 191 TAAAIAYGLDKS------DKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGE 244
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFD ++V ++ FK+K+ D++ N +AL +L+ E+AKR LSS IEIDS +G+
Sbjct: 245 DFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGI 304
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
D ++TRA+FEELN DLF+ T++PVEK L+D+ ++K + DIVLVGGSTRIPKVQ+LL+
Sbjct: 305 DLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLE 364
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAAIL 594
+F+GK+ +K INPDEAVAYGAAVQA +L
Sbjct: 365 SYFDGKKASKGINPDEAVAYGAAVQAGVL 393
Score = 164 bits (419), Expect = 4e-45
Identities = 44/67 (65%), Positives = 58/67 (86%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++PVEK L+D+ ++K + DIVLVGGSTRIPKVQ+LL+ +F+GK+ +K INPDEAVAYGA
Sbjct: 327 LKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGA 386
Query: 61 AVQAAIL 67
AVQA +L
Sbjct: 387 AVQAGVL 393
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 617 bits (1594), Expect = 0.0
Identities = 100/297 (33%), Positives = 161/297 (54%), Gaps = 3/297 (1%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
++++M + K+K+T + +++ I VP ++ + QR D+ IAGLN +RI+N+
Sbjct: 116 TQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDV 175
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGE 445
TAA ++YG+ K R V D+G ++ SI+ + G +V TA D H GG
Sbjct: 176 TAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGR 235
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
DFD + HF EFK KYK D+ N +A R+ TA E+ K+ LS++T A ++S+ V
Sbjct: 236 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDV 295
Query: 506 DFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 565
D + ++R EEL L EPV K+L AK+ ++ + ++GG+TRIP +++ +
Sbjct: 296 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 355
Query: 566 DFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 622
+ F GK L+ ++N DEA+A GAA AI V+ D+ P S+
Sbjct: 356 EAF-GKPLSTTLNQDEAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQ 409
Score = 514 bits (1325), Expect = e-174
Identities = 73/344 (21%), Positives = 139/344 (40%), Gaps = 24/344 (6%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
EPV K+L AK+ ++ + ++GG+TRIP +++ + + F GK L+ ++N DEA+A GA
Sbjct: 318 TEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGA 376
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV----MTALIKRNTTIPTKQTQTFT 116
A AI V+ D+ P S+ V + ++ P+ + T
Sbjct: 377 AFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLN 434
Query: 117 TYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSI--PPAPRGVPQIEVTFDIDANGILN 174
D T + + +E+T + P VP +++ D +G+
Sbjct: 435 RTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP-VKLKLRCDPSGLHT 491
Query: 175 VS----------AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVIT 224
+ + T K++ +TI L + + ++ + A+D+
Sbjct: 492 IEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETED 551
Query: 225 AKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWL-DSNQLAEKEEFEDKQ 283
KN+LE Y + ++ +E+E S AE+T++ N +WL D + K ++ K
Sbjct: 552 RKNTLEEYIYTLRGKLEEE-YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKY 610
Query: 284 KELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEE 327
+EL ++ N I + + A A +
Sbjct: 611 EELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQ 654
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 443 bits (1142), Expect = e-149
Identities = 163/303 (53%), Positives = 222/303 (73%), Gaps = 16/303 (5%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
T +E+S+++L +K AE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIIN
Sbjct: 85 TPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIIN 144
Query: 384 EPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG 443
EPTAAA+AYGLDK+ ++ +L++DLGGGTFDVSIL + DG+FEVK+TAGD HLG
Sbjct: 145 EPTAAALAYGLDKE-------EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLG 197
Query: 444 GEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIE---IDS 500
G+DFD ++++ V +FK+++ DL+ +K AL+RL+ A E+AK+ LS TQ I I +
Sbjct: 198 GDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISA 257
Query: 501 LFEG-VDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 559
G + ++TRA+FEEL+A L TM PV ++L+DA + A I ++LVGGSTRIP
Sbjct: 258 NENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPA 317
Query: 560 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIET 619
VQ+ ++ GKE +K +NPDE VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET
Sbjct: 318 VQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIET 372
Query: 620 AGG 622
GG
Sbjct: 373 MGG 375
Score = 374 bits (963), Expect = e-122
Identities = 126/230 (54%), Positives = 164/230 (71%), Gaps = 6/230 (2%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
M PV ++L+DA + A I ++LVGGSTRIP VQ+ ++ GKE +K +NPDE VA GA
Sbjct: 286 MGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGA 344
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
A+Q ++ G+ V+D++LLDVTPLSLGIET GGV T LI+RNTTIPT ++Q FTT +D
Sbjct: 345 AIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAAD 400
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQ V I V +GER M DN LG+F+LT IPPAPRGVPQIEVTFDIDANGI++V A +
Sbjct: 401 NQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAKDL 460
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLE 230
T KE ITI + G LS+E+I+RM+ +AE+ D K+K +N +
Sbjct: 461 GTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 445 bits (1146), Expect = e-148
Identities = 165/307 (53%), Positives = 217/307 (70%), Gaps = 23/307 (7%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
++S+ VL KMK+TAE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIINEP
Sbjct: 113 PQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEP 172
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTH 441
TAAA+AYGLDK +G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTH
Sbjct: 173 TAAALAYGLDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 442 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL 501
LGGEDFD+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLP 284
Query: 502 FEGVD------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555
+ D VTRA+ E L DL ++EP++ +L+DA + + I D++LVGG T
Sbjct: 285 YITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSL 615
R+P VQK + +FF GKE K +NPDEAVA GAAVQ +L GD V+D+LLLDVTPLSL
Sbjct: 345 RMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSL 399
Query: 616 GIETAGG 622
GIET GG
Sbjct: 400 GIETMGG 406
Score = 403 bits (1037), Expect = e-132
Identities = 140/299 (46%), Positives = 191/299 (63%), Gaps = 11/299 (3%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+EP++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA GA
Sbjct: 317 IEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGA 375
Query: 61 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSD 120
AVQ +L GD V+D+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T D
Sbjct: 376 AVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAED 431
Query: 121 NQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEK 180
NQ V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+VSA +K
Sbjct: 432 NQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDK 491
Query: 181 STGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTM 240
++GKE KITI G L++++I++MV DAE D K ++ +N + + + +
Sbjct: 492 NSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQV 550
Query: 241 EDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQ 299
E+ DK+ + ++T I + L +K E K +EL + ++ Q
Sbjct: 551 EE--AGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQ 604
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 413 bits (1063), Expect = e-139
Identities = 144/279 (51%), Positives = 194/279 (69%), Gaps = 19/279 (6%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
++S+ VL KMK+TAE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIINEP
Sbjct: 113 PQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEP 172
Query: 386 TAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTH 441
TAAA+AYGLDK +G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTH
Sbjct: 173 TAAALAYGLDKG------TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTH 226
Query: 442 LGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSL 501
LGGEDFD+R++N+ V+EFK+ DL + A++RL+ A E+AK LSS+ Q +++
Sbjct: 227 LGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT--DVNLP 284
Query: 502 FEGVD------FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGST 555
+ D VTRA+ E L DL ++E ++ +L+DA + + I D++LVGG T
Sbjct: 285 YITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQT 344
Query: 556 RIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAIL 594
R+P VQK + +FF GKE K +NPDEAVA GAAVQ +L
Sbjct: 345 RMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382
Score = 109 bits (275), Expect = 5e-26
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA GA
Sbjct: 317 IELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGA 375
Query: 61 AVQAAIL 67
AVQ +L
Sbjct: 376 AVQGGVL 382
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 339 bits (873), Expect = e-114
Identities = 106/149 (71%), Positives = 129/149 (86%)
Query: 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 141
DV PLSLGIETAGGVMT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 142 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKED 201
LG FEL+ IPPAPRGVPQIEVTF+IDANGILNVSA +KSTGK N+ITI N++GRL++ D
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 202 IERMVNDAEKYKAEDEKQKAVITAKNSLE 230
I+RMV++A++++ ED +Q+ + A+N LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
Score = 38.3 bits (90), Expect = 0.002
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 609 DVTPLSLGIETAGG 622
DV PLSLGIETAGG
Sbjct: 4 DVAPLSLGIETAGG 17
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 339 bits (871), Expect = e-114
Identities = 104/149 (69%), Positives = 124/149 (83%)
Query: 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 141
DV L+LGIET GGVMT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 142 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKED 201
LLGKFELT IPPAPRGVPQIEVTF +DANGIL VSA +K TGK ITITND+GRL++E+
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 202 IERMVNDAEKYKAEDEKQKAVITAKNSLE 230
I+RMV +AEK+ +ED KA + ++N LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
Score = 38.3 bits (90), Expect = 0.002
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 609 DVTPLSLGIETAGG 622
DV L+LGIET GG
Sbjct: 4 DVNALTLGIETTGG 17
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 333 bits (857), Expect = e-112
Identities = 96/149 (64%), Positives = 119/149 (79%)
Query: 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 141
DV PL+LGIET GGVMT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 142 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKED 201
LG F++T IPPAPRGVPQIEVTF+ID NGIL+VSA +K TG +NK+TITND RLS ED
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 202 IERMVNDAEKYKAEDEKQKAVITAKNSLE 230
IERM+NDA+K+ A+D+ QK + ++N LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
Score = 38.4 bits (90), Expect = 0.002
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 609 DVTPLSLGIETAGG 622
DV PL+LGIET GG
Sbjct: 4 DVNPLTLGIETVGG 17
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 292 bits (751), Expect = 4e-95
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 6/225 (2%)
Query: 78 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT 137
+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 138 KDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRL 197
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+VSA +K++GKE KITI G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 198 SKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQI 257
++++I++MV DAE D K + ++ +N + + + +E+ DK+ + ++T I
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTAI 177
Query: 258 LDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGG 302
+ L +K E K +EL + ++ Q
Sbjct: 178 ESALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
Score = 43.4 bits (103), Expect = 9e-05
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 605 LLLLDVTPLSLGIETAGG 622
+LLLDVTPLSLGIET GG
Sbjct: 1 VLLLDVTPLSLGIETMGG 18
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 283 bits (726), Expect = 5e-92
Identities = 97/179 (54%), Positives = 120/179 (67%), Gaps = 5/179 (2%)
Query: 63 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 122
L + +DVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 123 PGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 182
V I+V +GER M DN LLG+F L IPPAPRGVPQIEVTFDIDANGI++VSA +K T
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 183 GKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTME 241
G+E +I I + G LSK+DIE MV +AEKY ED ++K + A N E + ++ ME
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
Score = 52.6 bits (127), Expect = 5e-08
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 590 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 622
L + +DVTPLSLGIET GG
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGG 37
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 275 bits (705), Expect = 3e-88
Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 6/221 (2%)
Query: 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 140
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 141 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKE 200
L +F L IP P G I VTF +DA+G+L+V+A+EKSTG E I + G L+
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDS 119
Query: 201 DIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDK 260
+I M+ D+ Y +D K + + K ++ + +S+AER I D
Sbjct: 120 EIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAA--DAALLSAAERQVIDDA 177
Query: 261 CNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAG 301
+ + + + + E K ++ +
Sbjct: 178 AAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQS 215
Score = 39.9 bits (94), Expect = 0.002
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 608 LDVTPLSLGIETAGG 622
+DV PLSLG+ET GG
Sbjct: 1 MDVIPLSLGLETMGG 15
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 255 bits (653), Expect = 1e-81
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 82 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 141
DVTPLSLGIET GG+MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 142 LLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKED 201
LLG+F L IPPAPRGVPQ+EVTFDIDANGI+NVSA ++ TGKE +I I + G LSK+
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 202 IERMVNDAEKYKAEDEKQKAVITAKNSLE 230
IE M+ +AEK AED K+K ++ N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
Score = 36.1 bits (84), Expect = 0.013
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 609 DVTPLSLGIETAGG 622
DVTPLSLGIET GG
Sbjct: 4 DVTPLSLGIETLGG 17
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 224 bits (574), Expect = 2e-70
Identities = 76/132 (57%), Positives = 92/132 (69%)
Query: 64 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 123
++ H + ++DVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 124 GVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTG 183
V I V +GER DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+VSA +K++G
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 184 KENKITITNDRG 195
KE KITI G
Sbjct: 123 KEQKITIKASSG 134
Score = 49.7 bits (119), Expect = 2e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 591 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGG 622
++ H + ++DVTPLSLGIET GG
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGG 34
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 168 bits (428), Expect = 1e-49
Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 209 AEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWL 268
+ + + LESY FN+K T+EDEKLKDKIS ++ +I DKC++++KWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 269 DSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEEV 328
DSNQ AEKEEFE +QK+LE + NPII+KLYQ+ G P AG GPTIEEV
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGA---PPGAAPGGAAGGAGGPTIEEV 119
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 152 bits (386), Expect = 6e-44
Identities = 65/111 (58%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Query: 218 KQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKE 277
++AKN+LESY FNMKS +EDE LK KIS A++ ++LDKC +VI WLD+N LAEK+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 278 EFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEEV 328
EFE K+KELE +CNPII+ LYQ G PG G P G+G GPTIEEV
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPGP-GGFGAQGPKGGSGSGPTIEEV 112
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 148 bits (375), Expect = 2e-42
Identities = 65/111 (58%), Positives = 78/111 (70%), Gaps = 4/111 (3%)
Query: 222 VITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFED 281
V + LESY FNMK+T+EDEKL+ KI+ ++ +ILDKCN++I WLD NQ AEKEEFE
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 282 KQKELEAICNPIITKLYQAGGAP----GGFPGAPGAAPGAGAGPGPTIEEV 328
+QKELE +CNPIITKLYQ+ G G GA P GA GPTIEEV
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEV 112
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 128 bits (323), Expect = 3e-33
Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 63/265 (23%)
Query: 327 EVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPT 386
+ ++ ++K E LG + A +P +A AGL ++ +++EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 387 AAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGED 446
AAA A G++ + D+GGGT ++++ D GG
Sbjct: 131 AAARALGIN---DGI---------VVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTH 173
Query: 447 FDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD 506
+ + F A E K+ S + +
Sbjct: 174 LSLVLAGSYKIPF------------------EEA-ETIKKDFSRHREIMRVV-------- 206
Query: 507 FYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQD 566
R +E + +++ + Q + +VGG+ + +
Sbjct: 207 ------------------RPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSR 248
Query: 567 FFNGKELNKSINPDEAVAYGAAVQA 591
F GKE+ I+P G A+
Sbjct: 249 FL-GKEVQVPIHPLLVTPLGIALFG 272
Score = 45.7 bits (109), Expect = 3e-05
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+E + +++ + Q + +VGG+ + + F GKE+ I+P G
Sbjct: 210 IEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL-GKEVQVPIHPLLVTPLGI 268
Query: 61 AVQA 64
A+
Sbjct: 269 ALFG 272
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 99.9 bits (248), Expect = 4e-23
Identities = 26/239 (10%), Positives = 75/239 (31%), Gaps = 40/239 (16%)
Query: 355 VPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDL 414
+ + +++ T + G + ++++ E A + ++LI DL
Sbjct: 119 IERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD-------ELDSLLIIDL 171
Query: 415 GGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRAL 474
GG T D+S + + + GD+ LG + + + + ++ A
Sbjct: 172 GGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK------GSSYLAD 223
Query: 475 RRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKS 534
+ + + + I I + + +E+
Sbjct: 224 DIIIHRKDNNYLKQRINDENKISI---------------------VTEAMNEALRKLEQR 262
Query: 535 LRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAYGAAVQA 591
+ + + + ++++GG + + ++ + K+ N + G +
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319
Score = 42.9 bits (100), Expect = 2e-04
Identities = 6/66 (9%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN--GKELNKSINPDEAVAY 58
+ +E+ + + + + ++++GG + + ++ + K+ N +
Sbjct: 256 LRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVN 313
Query: 59 GAAVQA 64
G +
Sbjct: 314 GMYLIG 319
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 79.8 bits (196), Expect = 3e-16
Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 51/276 (18%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVIT-VPAYFNDSQRQATKD------------SGT 372
+E ++ + E+ G V + + P D + +A K+ G
Sbjct: 98 KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGE 157
Query: 373 IAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFE 432
+ N+ R+I P A L + ++ D+G T DV + + D
Sbjct: 158 VRQFNITRLIMRPQGVGAALYLLNQ--GIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP- 214
Query: 433 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSST 492
V + +G D + + +E DL
Sbjct: 215 VVELSFSLQIGVGDAISALSRKIAKETGFVVPFDL------------------------A 250
Query: 493 QASIEIDSLFEGVDF-YTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLV 551
Q ++ +F V+ E+L + +E + +LR + ++ V
Sbjct: 251 QEALSHPVMFRQKQVGGPEVSGPILEDLANRI----IENIRLNLRGEVDR---VTSLIPV 303
Query: 552 GGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVAYG 586
GG + + + ++ G + + A A G
Sbjct: 304 GGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
Score = 29.0 bits (64), Expect = 5.1
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVAYG 59
+E + +LR + ++ VGG + + + ++ G + + A A G
Sbjct: 283 IENIRLNLRGEVDR---VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 72.8 bits (178), Expect = 5e-14
Identities = 29/263 (11%), Positives = 71/263 (26%), Gaps = 54/263 (20%)
Query: 350 NAVITVPA--YFNDSQRQATKD------------SGTIAGLNVLRIINEPTAAAIAYGLD 395
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 396 KKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 455
+ +NV + D GG S+ S G +D R+ +
Sbjct: 167 ENFK------NKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVKDLIIRVGD-- 215
Query: 456 VQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRAR 515
+L TN++A L + + + + I+
Sbjct: 216 --ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIK------------------ 255
Query: 516 FEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 575
+ ++ K + Q+ ++ +GG+T+ +++ + +
Sbjct: 256 ------KVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSII 306
Query: 576 SINPDEAVAYGAAVQAAILHGDK 598
+ N G A + +
Sbjct: 307 TNNSQWTTCEGLYKVAVAKYCIQ 329
Score = 32.7 bits (74), Expect = 0.40
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++ K + Q+ ++ +GG+T+ +++ + + + N G
Sbjct: 262 LKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTY-PNNSIITNNSQWTTCEGL 318
Query: 61 AVQAAILHGDK 71
A + +
Sbjct: 319 YKVAVAKYCIQ 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 4e-12
Identities = 73/391 (18%), Positives = 125/391 (31%), Gaps = 114/391 (29%)
Query: 353 ITVPA--YFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVL 410
+ VP +F SQ ++ +I+ EPT + D + + A +
Sbjct: 20 LLVPTASFFIASQL---QEQ-------FNKILPEPTEG---FAADDEPTTPAELVGK--- 63
Query: 411 IFDLG----------GGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 460
F LG G FD +L + FE + +L G D ++ +
Sbjct: 64 -F-LGYVSSLVEPSKVGQFD-QVLNLCLTEFE------NCYLEGND-----IHALAAKLL 109
Query: 461 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVD-----FYT-----S 510
++ L K ++ TA AKR + + +LF V
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFGGQG 164
Query: 511 VTRARFEELNADLFR--------------GTMEPVEKSLRDAKMDKAQIHDIV--LVGGS 554
T FEEL DL++ T+ + ++ DA+ Q +I+ L S
Sbjct: 165 NTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 555 TR------------IPKVQKLLQDFFN----GKELNKSINPDE-------AVAYGAAVQA 591
P + ++Q + K L P E A + +
Sbjct: 224 NTPDKDYLLSIPISCPLIG-VIQ-LAHYVVTAKLLG--FTPGELRSYLKGATGHSQGLVT 279
Query: 592 A--ILHGDKSEEVQDLLLLDVTPL-SLGIETAGGFELTSIPPATSRLCLD--EVTASISM 646
A I D E + +T L +G+ + TS+PP+ L+ E S M
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PM 338
Query: 647 L--TGYPGLCLPS-----GSQLVREDKINIT 670
L + + S L ++ I+
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Score = 53.5 bits (128), Expect = 2e-07
Identities = 106/640 (16%), Positives = 199/640 (31%), Gaps = 227/640 (35%)
Query: 85 PLSL--G-IETAGGVMTAL------IKR--NTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 133
PL+L G +E V TA ++ N +P T+ F +D++P E
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE-PTEGFA--ADDEP---TTPAE-- 59
Query: 134 RAMTKDNNLLGKFEL----TSIPPAPRG---------VPQIEVTF----DIDANGILNVS 176
L+GKF L + + P+ G + + E + DI A +
Sbjct: 60 --------LVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-LAAKLL 109
Query: 177 AIEKSTGKENKITITN-DRGR-LSKEDIERMVNDAEKYKAEDEKQKAVITAK-----NSL 229
+T + K I N R ++K ++ N A + A + A N+
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN--AQLVAIFGGQGNT- 166
Query: 230 ESYCFN-MKSTMEDEK--LKDKI-SSAERTQILDKCN-----------DVIKWLDSNQLA 274
+ Y F ++ + + D I SAE L + ++++WL++
Sbjct: 167 DDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 275 EKEEFEDKQKELEAI---CNPIITKLYQA----------GGAPGGFPGAPGAAPGAGAGP 321
+++ L +I C P+I + Q G PG A G G
Sbjct: 226 PDKDY------LLSIPISC-PLIG-VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG- 276
Query: 322 GPTIEEVSSMVLTKMKETAEAYLGKTVSNAV-----I------TVP-AYFNDSQRQATKD 369
+ + V ++ E++ +V A+ I P S + + +
Sbjct: 277 ------LVTAVAIAETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 370 SGTIAGLNVLRIINEPTA-AAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIED 428
+ P+ +I+ L ++ ++D
Sbjct: 330 NN----------EGVPSPMLSIS-NLTQE---------------------------QVQD 351
Query: 429 GIFEVKSTAGDTHLGGEDFDNR----MVN---HFVQEFKRKYKKDLTTNKRALRRLRTAC 481
+ + ++HL + +VN + V ++ ++L L
Sbjct: 352 YVNKT-----NSHLPA---GKQVEISLVNGAKNLV----------VSGPPQSLYGLNLTL 393
Query: 482 ERAKRTLSSSTQASIEIDSLFEGVDFYTS---VTRARFEELNADLFRGTMEP-VEKSLRD 537
+AK S Q+ I + F V + F ++ L + P + +D
Sbjct: 394 RKAKAP-SGLDQSRIPFSE--RKLKFSNRFLPVA-SPF---HSHL----LVPASDLINKD 442
Query: 538 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK---ELNKSINPD-------EAVAYGA 587
+ + +IP + D F+G L+ SI+ V +
Sbjct: 443 LVKNNVSFN-----AKDIQIP-----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 588 AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGFELTS 627
Q H +LD P G +G LT
Sbjct: 493 TTQFKATH-----------ILDFGP---G-GASGLGVLTH 517
Score = 52.4 bits (125), Expect = 5e-07
Identities = 77/519 (14%), Positives = 149/519 (28%), Gaps = 212/519 (40%)
Query: 18 IHDIV---LVGGSTRIPKVQKLLQDFFNGKEL-NKSINPD------EAVAYGAAVQAAIL 67
IH + L T + K ++L++++ + + + + AV G A AI
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 68 HG-----DKSEEVQDL------LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFT 116
G D EE++DL L+ D+ I+ + ++ LI+ TQ
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDL------IKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 117 -----TYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVT----FDI 167
N P Y L SIP + P I V + +
Sbjct: 215 ILEWLENPSNTPDKD---Y-----------------LLSIPIS---CPLIGVIQLAHYVV 251
Query: 168 DAN---------------------GILNVSAIEKSTGKEN-------------------- 186
A G++ AI ++ E+
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 187 -------------KITITNDRG---------RLSKEDIERMVNDAEKYKAEDEK------ 218
+ ++ N+ G L++E ++ VN + ++
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 219 ---QKAVIT--AKNSLESYCFNM-KSTMEDEKLKDKISSAER----------------TQ 256
+ V++ + SL + K+ + +I +ER +
Sbjct: 372 NGAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 257 ILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPG 316
+L +D+I + K K++ I P+ Y
Sbjct: 431 LLVPASDLIN-----KDLVKNNVSFNAKDI-QI--PV----YDTFD-------------- 464
Query: 317 AGAGPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQR-QATK----DSG 371
G + +S + ++ + +I +P + + + +AT G
Sbjct: 465 -----GSDLRVLSGSISERIVD------------CIIRLPVKWETTTQFKATHILDFGPG 507
Query: 372 TIAGLNVL----------RIINEPTAAAIAYGLDKKVGS 400
+GL VL R+I A + D G
Sbjct: 508 GASGLGVLTHRNKDGTGVRVI---VAGTLDINPDDDYGF 543
Score = 44.7 bits (105), Expect = 1e-04
Identities = 53/308 (17%), Positives = 84/308 (27%), Gaps = 105/308 (34%)
Query: 122 QPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFD------IDANGILNV 175
Q G Q E+ M D L A + V ++ D G ++
Sbjct: 1624 Q-G--SQ----EQGMGMD--LYKTS------KAAQDV------WNRADNHFKDTYGF-SI 1661
Query: 176 SAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKN-SLESYCF 234
I + I ++G+ +E+ M+ E K + + N SY F
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 235 NMKSTMEDEKLKDKISSAERTQ--ILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNP 292
EK +S+ + TQ + L EK FED + +
Sbjct: 1720 ------RSEK--GLLSATQFTQPALT--------------LMEKAAFEDLKSK-----GL 1752
Query: 293 IITKLYQAG---G------APGG-FP-----------G------APGAAPG------AGA 319
I AG G + G P G
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 320 GPGPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQ--ATKDSGTIAGLN 377
PG S L + E G V +N +Q A +G + L+
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVE------IVNYNVENQQYVA---AGDLRALD 1863
Query: 378 VL-RIINE 384
+ ++N
Sbjct: 1864 TVTNVLNF 1871
Score = 43.9 bits (103), Expect = 2e-04
Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 101/258 (39%)
Query: 6 KSLRD--AKMDKAQIHDIVLVGGSTRIPKV-----QKLLQDFFNGKE--LNKSIN--PDE 54
K +R+ + M I D G + K+ + F ++ L+ + P
Sbjct: 1682 KRIRENYSAMIFETIVD-----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-- 1734
Query: 55 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTP--LSLGIE-TA----GGVMT--ALIK--- 102
A+ ++ A KS+ + D T SLG E A VM+ +L++
Sbjct: 1735 ALT---LMEKAAFEDLKSKGLIPA---DATFAGHSLG-EYAALASLADVMSIESLVEVVF 1787
Query: 103 -RNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTSIPPAPRGVPQI 161
R G+ +QV A+ +D + + +I P ++
Sbjct: 1788 YR--------------------GMTMQV-----AVPRDELGRSNYGMIAINPG-----RV 1817
Query: 162 EVTFDIDA------------NGIL-----NVS-----------AIEKSTG-----KENKI 188
+F +A ++ NV A++ T K KI
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 189 TITNDRGRLSKEDIERMV 206
I + LS E++E +
Sbjct: 1878 DIIELQKSLSLEEVEGHL 1895
Score = 37.7 bits (87), Expect = 0.018
Identities = 44/287 (15%), Positives = 75/287 (26%), Gaps = 122/287 (42%)
Query: 504 GVDFYTS--VTRARFEELNADLFRGTME-------------PVE----------KSLRD- 537
G+D Y + + + AD + PV K +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNR--ADNH--FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 538 -AKMDKAQIHDIVLVGGSTRIPKV-----QKLLQDFFNGKE--LN--------------- 574
+ M I D G + K+ + F ++ L+
Sbjct: 1688 YSAMIFETIVD-----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 575 -----KS---INPDEAVA------YGA-AVQAAILHGDKSEEVQDLLLL----------D 609
KS I D A Y A A A ++ ++ L+ +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVM------SIESLVEVVFYRGMTMQVA 1796
Query: 610 VTPLSLGIETAGGFEL--TSIPPATSRLCLDEVTASISMLTGYPGLCLP-----SGSQLV 662
V LG G + + + S+ L V + TG L Q V
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG--WLVEIVNYNVENQQYV 1854
Query: 663 ------------------REDKINITKTVIFVSCSQRRCIERYVEMI 691
+ KI+I + + S S +E +
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIE--LQKSLS----LEEVEGHL 1895
Score = 30.8 bits (69), Expect = 2.3
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 616 GIETAG-GFELTSIPPATSRLCLDEVTASISMLTGYPGLCLPSGSQLVREDKIN-ITKTV 673
G + G G +L A ++ + A Y G S +V N + T+
Sbjct: 1625 GSQEQGMGMDLYKTSKA-AQDVWNR--ADNHFKDTY-GF---SILDIVIN---NPVNLTI 1674
Query: 674 IFVSCSQRRCIERYVEMI 691
F +R E Y MI
Sbjct: 1675 HFGGEKGKRIRENYSAMI 1692
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 64.3 bits (156), Expect = 3e-11
Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 35/222 (15%)
Query: 380 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGD 439
+I+ +P + ++ A + E + D G GT + + V+ +
Sbjct: 158 KIVAQPMGTLLDLNMENGKVFKAFT-EGKYSVLDFGSGTTIIDTY---QNMKRVEEESFV 213
Query: 440 THLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEID 499
+ G DF R+ + +K + T + + L + + + I+
Sbjct: 214 INKGTIDFYKRIAS----HVSKKSEGASITPRMIEKGLEY------KQCKLNQKTVIDF- 262
Query: 500 SLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPK 559
+ F + L M E ++ + I I++ GG I
Sbjct: 263 -------------KDEFYKEQDSLIEEVMSNFEITVGNI----NSIDRIIVTGGGANI-- 303
Query: 560 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEE 601
L ++ K+ + + G +L +E
Sbjct: 304 HFDSLSHYY-SDVFEKADDSQFSNVRGYEKLGELLKNKVEQE 344
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 7e-10
Identities = 81/630 (12%), Positives = 170/630 (26%), Gaps = 238/630 (37%)
Query: 28 TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD----KS----EEVQDLL 79
+R+ KL ++ + P + V ++ G K+ +
Sbjct: 132 SRLQPYLKL-------RQALLELRPAKNV---------LIDGVLGSGKTWVALDVCLSYK 175
Query: 80 LLDVTP-----LSLG-IETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 133
+ L+L + V+ L K I +T+ SD+ + ++++ +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQ 231
Query: 134 RAMTKDNNLLGKFELTSIPPAPRG------V--PQIEVTFDIDANGILNVSAIEKSTGKE 185
+ LL P V + F++ IL
Sbjct: 232 ---AELRRLL------KSKPYENCLLVLLNVQNAKAWNAFNLSCK-IL------------ 269
Query: 186 NKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLE--SYCFNMKSTMED- 242
+T T K+ + + + + D +T + + +D
Sbjct: 270 --LT-TRF-----KQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCR--PQDL 318
Query: 243 ----------------EKLKDKISSAERTQ--ILDKCNDVIKWLDSNQLAEKEEFEDKQK 284
E ++D +++ + + DK +I+ N L E E+
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVL-EPAEYRKMFD 376
Query: 285 ELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPT----------IEEVSSMVLT 334
L ++ FP P A PT I+ +V+
Sbjct: 377 RL-SV-----------------FP------PSA---HIPTILLSLIWFDVIKSDVMVVVN 409
Query: 335 KMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGL 394
K+ + + + K + I++P+ + + + + + L+ I++ Y +
Sbjct: 410 KLHK--YSLVEKQPKESTISIPSIYLELKVKLENE----YALHR-SIVD-------HYNI 455
Query: 395 DKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLG--------GE 445
K FD D + H+G E
Sbjct: 456 PKT--------------FDSDDLIPPY-----LDQYFYS--------HIGHHLKNIEHPE 488
Query: 446 DFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV 505
F+ + D ++ +R TA AS I + + +
Sbjct: 489 RMT---------LFRMVFL-DFRFLEQKIRHDSTAW-----------NASGSILNTLQQL 527
Query: 506 DFYTS-VTR--ARFEELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQK 562
FY + ++E L + + E + T + ++
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---------------YTDL--LRI 570
Query: 563 LLQDFFNGKELNKSINPDEAVAYGAAVQAA 592
L DEA+ A Q
Sbjct: 571 ALM------------AEDEAIFEEAHKQVQ 588
Score = 57.6 bits (138), Expect = 1e-08
Identities = 74/546 (13%), Positives = 140/546 (25%), Gaps = 198/546 (36%)
Query: 117 TYSDNQPGVLIQVYEGERAMTKD----------NNLLGKFELTSIPPAPRGVPQIEVTFD 166
Y D ++ V+E A + ++L K E+ I + V F
Sbjct: 17 QYKD-----ILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 167 I----DANGI---------LNVSAIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYK 213
+ +N + E + R + + D R+ ND + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFA 127
Query: 214 AED-EKQKAVITAKNSL-----ESYCF--NM----KSTMEDEKLKDKISSAERTQILDKC 261
+ + + + + +L + K+ + + ++ K
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-------KVQCKM 180
Query: 262 NDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGP 321
+ I WL+ L E + L+ + I
Sbjct: 181 DFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK------------- 224
Query: 322 GPTIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRI 381
I + + + +K Y N L VL
Sbjct: 225 -LRIHSIQAELRRLLKS-----------------KPYEN--------------CLLVLLN 252
Query: 382 INEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 441
+ + K +A F+L + T + + S A TH
Sbjct: 253 VQ-----------NAKAWNA----------FNLSCKIL---LTTRFKQVTDFLSAATTTH 288
Query: 442 LGGEDFDNRMVNHFVQEFKRKY----KKDL-----TTNKRAL----RRLR---------- 478
+ + + V+ KY +DL TTN R L +R
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 479 -TACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFR------------ 525
C++ + SS ++ L + R F+ L+ +F
Sbjct: 349 HVNCDKLTTIIESS------LNVL------EPAEYRKMFDRLS--VFPPSAHIPTILLSL 394
Query: 526 --GTMEPVE----------KSL--RDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGK 571
+ + SL + K I I L +L N
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEY 443
Query: 572 ELNKSI 577
L++SI
Sbjct: 444 ALHRSI 449
Score = 45.6 bits (107), Expect = 5e-05
Identities = 57/421 (13%), Positives = 110/421 (26%), Gaps = 152/421 (36%)
Query: 6 KS------LRDAKMDKA---QIHDIVLVGGSTRIPK-VQKLLQDFFNGKELNKSINPDEA 55
K+ K+ +I + L + P+ V ++LQ + N + D +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 56 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRN----------- 104
+ + E++ LL L L+ N
Sbjct: 221 SNIKLRIHSI------QAELRRLLKSKPYENCL-----------LVLLNVQNAKAWNAFN 263
Query: 105 ---TTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN--NLLGKF---ELTSIPP--- 153
+ T + + T + I + +T D +LL K+ +P
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 154 --APRGVPQIEVTFDIDANGILNV---------SAIEKS----TGKENK----------- 187
PR + I + N + IE S E +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 188 -ITITNDR-----GRLSKEDIERMVNDAEKY-----------------------KAEDEK 218
I + K D+ +VN KY K E+E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 219 Q--KAVITAKNSLESYCFN------------------MKSTMEDEK-------------L 245
++++ N +++ + +K+ E+ L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 246 KDKI-----SSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
+ KI + IL+ + + K D + E + N I+ L +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY--------KPYICDNDPKYERLVNAILDFLPKI 555
Query: 301 G 301
Sbjct: 556 E 556
Score = 44.8 bits (105), Expect = 1e-04
Identities = 48/291 (16%), Positives = 85/291 (29%), Gaps = 83/291 (28%)
Query: 439 DTHLGGEDFDNR-MVNH----FVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ 493
D G + + +++ FV F K +D+ K L + E + S
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSK-----EEIDHIIMSKDA 60
Query: 494 ASIEIDSLFEGVDFYTSVTRARF--EELNADLFRGTMEPVEKSLRDAKMDKA---QIHDI 548
S LF + +F E L + ++ M P++ R M + D
Sbjct: 61 VS-GTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 549 VLVGGS-------TRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD---- 597
+ +R+ KL ++ + P + V ++ G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNV---------LIDGVLGSG 162
Query: 598 KS----EEVQDLLLLDVTP-----LSLG--------IETAGGFELTSIPPATSR------ 634
K+ + + L+L +E P TSR
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 635 --LCLDEVTASISML---TGYPGLCLPSGSQLVREDKINITKTV-IF-VSC 678
L + + A + L Y CL LV + + K F +SC
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN-CL-----LVLLN-VQNAKAWNAFNLSC 266
Score = 32.1 bits (72), Expect = 0.77
Identities = 26/165 (15%), Positives = 44/165 (26%), Gaps = 47/165 (28%)
Query: 4 VEKSL--RDAKMDKAQIHDI--VLVGGSTRIPKVQKLLQDFFNGKE--LNKSINPDEA-- 55
+ SL + K I I L + + + D +N + + + P
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 56 -----VAYGAAVQAAILHGDKSEEVQDL-----LLLDVTPLSLGIETAGGVMTALIKRNT 105
+ + H E + + + LD L I TA +
Sbjct: 472 YFYSHIGH---------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS---TAWNASGS 519
Query: 106 TIPTKQTQTFTTY----SDNQPGVLIQVYEGERAMTKDNNLLGKF 146
+ T Q Y DN P YE + + F
Sbjct: 520 ILNT--LQQLKFYKPYICDNDP-----KYE---RLVNA---ILDF 551
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 51.7 bits (125), Expect = 4e-07
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 20/115 (17%)
Query: 352 VITVPAYFNDSQRQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLI 411
VI VP D +R+A D+G AG + + +I EP AAAI L+ V +G+ ++
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLN--VEEPSGN-----MV 151
Query: 412 FDLGGGTFDVSILTIEDGIFEVKS--TAGDTHLGGEDFDNRMVNHFVQEFKRKYK 464
D+GGGT +V+++++ I +S AGD + D +V + + Y+
Sbjct: 152 VDIGGGTTEVAVISL-GSIVTWESIRIAGD------EMDEAIVQY----VRETYR 195
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 48.5 bits (116), Expect = 5e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 521 ADLFRGTMEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
+L R +E + S RD + A I I+L+GG + ++ L G ++ +
Sbjct: 397 ENLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR- 454
Query: 577 INPDEAVAYGAAVQAAILHGDKSEE 601
DE VA GAA QAA + ++E
Sbjct: 455 PATDEYVAIGAARQAAWVLSGETEP 479
Score = 42.4 bits (100), Expect = 4e-04
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 1 MEPVEKSLRDA----KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAV 56
+E + S RD + A I I+L+GG + ++ L G ++ + DE V
Sbjct: 404 VEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSIL-GMDVTR-PATDEYV 461
Query: 57 AYGAAVQAAILHGDKSEE 74
A GAA QAA + ++E
Sbjct: 462 AIGAARQAAWVLSGETEP 479
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 46.0 bits (109), Expect = 3e-05
Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 31/198 (15%)
Query: 374 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEV 433
AGL + + +P A A +R L+ D+G + + +L
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEAR-----LAEEPDRVFLVLDIGAESTSLVLL--RGDKPLA 215
Query: 434 KSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRTLSSSTQ 493
L G+DF + F + E KRT +T
Sbjct: 216 ---VRVLTLSGKDFTEAIARSFNLDLLA-------------------AEEVKRTYGMATL 253
Query: 494 ASIEIDSLFEGVDFYTSVTRARFEELNADLFRGTMEPVEKSLR--DAKMDKAQIHDIVLV 551
+ + + L + + R + + + + +SL ++++A L+
Sbjct: 254 PTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLL 313
Query: 552 GGSTRIPKVQKLLQDFFN 569
GG +++ + LL D
Sbjct: 314 GGGSKLRGLASLLTDTLG 331
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 42.6 bits (99), Expect = 8e-05
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 26/54 (48%)
Query: 275 EKEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAG--AGPGPTIE 326
EK+ K+L+A KLY A +AP A T+E
Sbjct: 18 EKQAL----KKLQAS-----LKLY-----------ADDSAPALAIKA----TME 47
Score = 29.1 bits (64), Expect = 3.1
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 199 KEDIERMVNDAEKYKAEDEKQKAVITAKNSLE 230
K+ ++++ + Y A+D I A ++E
Sbjct: 19 KQALKKLQASLKLY-ADDSAPALAIKA--TME 47
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 43.7 bits (104), Expect = 1e-04
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 521 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
+L R +E V +L D + + L+GG R +++L D G++L+
Sbjct: 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYR 417
Query: 577 INPDEAVAYGAAVQAAI 593
D A GAA A I
Sbjct: 418 TGGDVGPALGAARLAQI 434
Score = 37.6 bits (88), Expect = 0.015
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66
+ + L+GG R +++L D G++L+ D A GAA A I
Sbjct: 385 IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQI 434
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 521 ADLFRGTMEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIN 578
A + +E SLR + ++ + +VGG R +++ D L +
Sbjct: 377 AQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPD 435
Query: 579 PDEAVAYGAAVQAAI 593
G A AA+
Sbjct: 436 AHLHPLRGLAALAAV 450
Score = 37.2 bits (87), Expect = 0.016
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 1 MEPVEKSLRDA--KMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAY 58
+E SLR + ++ + +VGG R +++ D L +
Sbjct: 384 LEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMIADNL-NVSLLVKPDAHLHPLR 442
Query: 59 GAAVQAAI 66
G A AA+
Sbjct: 443 GLAALAAV 450
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 41.2 bits (97), Expect = 9e-04
Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 48/209 (22%)
Query: 374 AGLNVLRIINEPTAAAIAYGLDKKVGSAAGSGERN--VLIFDLGGGTFDVSILTIEDGIF 431
+ ++ + + A + E++ V++ +LG + ++G+
Sbjct: 180 TVKSPFQLKSSLVSTAEG---------VLTTPEKDRGVVVVNLGYNFTGLIA--YKNGV- 227
Query: 432 EVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLTTNKRALRRLRTACERAKRT---- 487
+ +G + D+ L ER T
Sbjct: 228 -PIKISYVP-VGMKHVIK----------------DV---SAVLDTSFEESERLIITHGNA 266
Query: 488 -LSSSTQASIEIDSLFEGVDFYTS------VTRARFEELNADLFRGTMEPVEKSLRDAKM 540
+ + I+ L T+ + AR E+ + VE + +
Sbjct: 267 VYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREI-MSKSKKFFREVEAKIVEEGE 325
Query: 541 DKAQIHDIVLVGGSTRIPKVQKLLQDFFN 569
+VL GG +IP++ +L + F
Sbjct: 326 IG-IPGGVVLTGGGAKIPRINELATEVFK 353
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 38.3 bits (88), Expect = 0.008
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 533 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL----LQDFFNGKELNKSINPDEA--VAYG 586
++LR + H I ++ + +P ++ L ++ + +++ A VAY
Sbjct: 43 EALRAQLASGEEPHGIPVMRERSTVPDSKRFILVELSNWAADSPVTLAVDVTNAYVVAYR 102
Query: 587 AAVQAAILHGDKSEEVQDLLLLDVTPLSLG-------IETAGGFELTSIPPATSRLCLDE 639
Q+ L D + + LL D + +E G I L +D
Sbjct: 103 TGSQSFFLREDNPDPAIENLLPDTKRYTFPFSGSYTDLERVAGERREEIL-----LGMDP 157
Query: 640 VTASISMLTGYPG 652
+ +IS L
Sbjct: 158 LENAISALWISNL 170
Score = 32.1 bits (72), Expect = 0.72
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 6 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKL----LQDFFNGKELNKSINPDEA--VAYG 59
++LR + H I ++ + +P ++ L ++ + +++ A VAY
Sbjct: 43 EALRAQLASGEEPHGIPVMRERSTVPDSKRFILVELSNWAADSPVTLAVDVTNAYVVAYR 102
Query: 60 AAVQAAILHGDKSEEVQDLLLLDVTPLSLG-------IETAGGV 96
Q+ L D + + LL D + +E G
Sbjct: 103 TGSQSFFLREDNPDPAIENLLPDTKRYTFPFSGSYTDLERVAGE 146
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 37.0 bits (86), Expect = 0.025
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 521 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGG-STRIPKVQKLLQDFFNGKELNK 575
+++R +E R ++H++ GG + + ++ D +E+ K
Sbjct: 412 EEIYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT-NREI-K 469
Query: 576 SINPDEAVAYGAAVQAAILHGDKSEEVQDL 605
+ A GAA+ A++ G + +
Sbjct: 470 VAASKQTPALGAAMFASVAAGSEVGGYDSI 499
Score = 29.3 bits (66), Expect = 4.7
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 17 QIHDIVLVGG-STRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEV 75
++H++ GG + + ++ D +E+ K + A GAA+ A++ G +
Sbjct: 439 EVHELYACGGLPQKNHLLMQIFADVT-NREI-KVAASKQTPALGAAMFASVAAGSEVGGY 496
Query: 76 QDL 78
+
Sbjct: 497 DSI 499
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 35.7 bits (83), Expect = 0.058
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 521 ADLFRGTMEPVEKSLRDA--KMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
L+R +E V + R +D G TR ++ D + +
Sbjct: 373 GHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADVL-QRPVQLL 431
Query: 577 INPDEAVAYGAAVQAAI 593
N A GAA AAI
Sbjct: 432 AN-PLGSAVGAAWVAAI 447
Score = 29.9 bits (68), Expect = 3.5
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 16 AQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66
G TR ++ D + + N A GAA AAI
Sbjct: 399 HAPQRFFASDGGTRSRVWMGIMADVL-QRPVQLLAN-PLGSAVGAAWVAAI 447
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.068
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 32/103 (31%)
Query: 193 DRGRLSKEDIE--RMVNDA--EKYKAEDEKQKAVI--TAKNSLESYCFNMKSTMEDEKLK 246
DR E I R ++ A + + AK LE + +E
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE----- 132
Query: 247 DKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAI 289
K +N++A+ + F +Q + + I
Sbjct: 133 -------------------KNKINNRIAD-KAFY-QQPDADII 154
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 35.0 bits (81), Expect = 0.087
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 521 ADLFRGTMEPVEKSLRD--AKMDKA--QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
A + T++ + R M++ I ++ GG T+ P + + G +
Sbjct: 415 ALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAM-LL 472
Query: 577 INPDEAVAYGAAVQAAI 593
EA+ G+A+ +
Sbjct: 473 PEESEAMLLGSAMMGTV 489
Score = 31.1 bits (71), Expect = 1.4
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 17 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAI 66
I ++ GG T+ P + + G + EA+ G+A+ +
Sbjct: 442 NIDTMMASGGGTKNPIFVQEHANAT-GCAM-LLPEESEAMLLGSAMMGTV 489
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 34.5 bits (80), Expect = 0.13
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 521 ADLFRGTMEPVEKSLRD----AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
++ R +E + +L D + + I GG + V++L + FN +
Sbjct: 366 PEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFN-VPIVTM 424
Query: 577 INPDEAVAYGAAVQAAI 593
++ A A
Sbjct: 425 KE-QQSGTLAAMFLARQ 440
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 32.5 bits (74), Expect = 0.45
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 20 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDL 78
++V+VGG R + + + E+ P A GAA+ A + +EV+++
Sbjct: 209 NVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI 266
Score = 32.5 bits (74), Expect = 0.45
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 547 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDL 605
++V+VGG R + + + E+ P A GAA+ A + +EV+++
Sbjct: 209 NVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI 266
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 31.5 bits (72), Expect = 1.2
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 499 DSLFEGVDFYTSVTRARFEELN-------ADLFRGTMEPVEKSLRD-----AKMDKAQIH 546
D F D S +A E+ A+L R + + D A++
Sbjct: 336 DDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFS 395
Query: 547 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHG 596
+ +VGG + + +L D G + P EA G +
Sbjct: 396 QLHIVGGGCQNTLLNQLCADAC-GIRV--IAGPVEASTLGNIGIQLMTLD 442
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 1.7
Identities = 12/104 (11%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 192 NDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDE-----KLK 246
R ++K +++++ K E + LE+ ++ ++++ L
Sbjct: 896 CYRRMMAKRELKKL-------KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Query: 247 DKISSAERTQILDKCNDVIKWLDSNQLAEKE--EFEDKQKELEA 288
+K+++ E + + ++ +++E+E ++ L+
Sbjct: 949 EKMNNLE-ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase,
disulfide bond, glycoprotein, hydrolase, plant defense;
HET: NAG; 1.60A {Gelonium multiflorum} PDB: 3ku0_A*
Length = 251
Score = 30.1 bits (67), Expect = 2.5
Identities = 25/167 (14%), Positives = 43/167 (25%), Gaps = 22/167 (13%)
Query: 533 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA- 591
LR + H I L+ P +L N I D Y Q
Sbjct: 22 NELRVKLKPEGNSHGIPLLRKKCDDPGKCFVLVALSNDNGQLAEIAIDVTSVYVVGYQVR 81
Query: 592 --AILHGDKSEEVQDLLLLDVTPLSLG-------IETAGGFELTSIPPATSRLCLDEVTA 642
+ D + + L + L +E + L ++ +
Sbjct: 82 NRSYFFKDAPDAAYEGLFKNTIKTRLHFGGSYPSLEGEKA-YRETTD-----LGIEPLRI 135
Query: 643 SISMLTGYPGLCLPSGSQLVREDKINITKTVIFVSCSQR-RCIERYV 688
I L + E ++ + VS + R IE +
Sbjct: 136 GIKKLDENAI-----DNYKPTEIASSLLVVIQMVSEAARFTFIENQI 177
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold,
metal binding protein; HET: ADP; 3.00A {Acidaminococcus
fermentans} SCOP: c.55.1.5
Length = 270
Score = 29.8 bits (67), Expect = 3.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 20 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 64
D+V+ GG + V+ L++ G E+ S A GAA+ A
Sbjct: 211 DVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYA 254
Score = 29.8 bits (67), Expect = 3.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 547 DIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 591
D+V+ GG + V+ L++ G E+ S A GAA+ A
Sbjct: 211 DVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYA 254
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 27.7 bits (62), Expect = 4.1
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 408 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGG 444
+L+ +G + VS L + G + + G H+ G
Sbjct: 45 EILVKHVGSRLYSVSYLLKDKGEYTLVVKWGHEHIPG 81
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 29.6 bits (66), Expect = 4.5
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 651 PGLCLPSGSQLVREDKINITKTVIFVSCSQRRCIERYVEMIA-----IAGRCTRHRRMRY 705
PG C + + + T F +C+ R + Y + I C +
Sbjct: 236 PG-CQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKYYTDSILNPDGFAGFSCASYSDFTA 294
Query: 706 QK 707
K
Sbjct: 295 NK 296
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_7
Length = 162
Score = 28.5 bits (63), Expect = 4.7
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 298 YQAGGAPGGFPGAPGAAPGAGAGPGP 323
+ G GA A G P
Sbjct: 136 RREGEEAAKEEGAAETAQGNQETPAQ 161
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 28.6 bits (64), Expect = 7.0
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 54 EAVAYGAAVQAAILHGDKSEEVQDLLL---LDVTPLSLGIETAGGVMTALIKRNTTIPTK 110
V + + +H + E ++ +L L ++ + A+ + + P +
Sbjct: 269 IQVGVATYIMSK-VHKHREERIKKILSDTGFFNYVKGLNMKKS-DFKRAISEAHLIKPAR 326
Query: 111 QT 112
T
Sbjct: 327 YT 328
Score = 28.6 bits (64), Expect = 7.5
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 581 EAVAYGAAVQAAILHGDKSEEVQDLLL---LDVTPLSLGIE 618
V + + +H + E ++ +L L ++
Sbjct: 269 IQVGVATYIMSK-VHKHREERIKKILSDTGFFNYVKGLNMK 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.367
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,775,940
Number of extensions: 689706
Number of successful extensions: 1850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1773
Number of HSP's successfully gapped: 106
Length of query: 714
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 614
Effective length of database: 3,909,693
Effective search space: 2400551502
Effective search space used: 2400551502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.5 bits)