RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5547
(714 letters)
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 270 bits (691), Expect = 3e-87
Identities = 173/190 (91%), Positives = 187/190 (98%)
Query: 405 GERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYK 464
ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF+ EFKRK+K
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHK 62
Query: 465 KDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLF 524
KD++ NKRA+RRLRTACERAKRTLSSSTQASIEIDSL+EG+DFYTS+TRARFEELNADLF
Sbjct: 63 KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLF 122
Query: 525 RGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 584
RGT++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVA
Sbjct: 123 RGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVA 182
Query: 585 YGAAVQAAIL 594
YGAAVQAAIL
Sbjct: 183 YGAAVQAAIL 192
Score = 108 bits (270), Expect = 1e-27
Identities = 61/67 (91%), Positives = 67/67 (100%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
++PVEK+LRDAK+DK+QIHDIVLVGGSTRIPK+QKLLQDFFNGKELNKSINPDEAVAYGA
Sbjct: 126 LDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGA 185
Query: 61 AVQAAIL 67
AVQAAIL
Sbjct: 186 AVQAAIL 192
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 259 bits (663), Expect = 4e-83
Identities = 90/198 (45%), Positives = 129/198 (65%), Gaps = 9/198 (4%)
Query: 405 GERNVLIFDLGGGTFDVSILTIE----DGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 460
G R + ++DLGGGTFD+SI+ I+ + FEV +T GDTHLGGEDFD+R++N+ V+EFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 461 RKYKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGV----DFYTSVTRARF 516
+ DL + A++RL+ A E+AK LSS+ Q + + + VTRA+
Sbjct: 61 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 120
Query: 517 EELNADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 576
E L DL ++E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K
Sbjct: 121 ESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKD 179
Query: 577 INPDEAVAYGAAVQAAIL 594
+NPDEAVA GAAVQ +L
Sbjct: 180 VNPDEAVAIGAAVQGGVL 197
Score = 96.5 bits (240), Expect = 2e-23
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA 60
+E ++ +L+DA + + I D++LVGG TR+P VQK + +FF GKE K +NPDEAVA GA
Sbjct: 132 IELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGA 190
Query: 61 AVQAAIL 67
AVQ +L
Sbjct: 191 AVQGGVL 197
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 237 bits (607), Expect = 2e-75
Identities = 145/159 (91%), Positives = 153/159 (96%)
Query: 72 SEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 131
SE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 132 GERAMTKDNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITIT 191
GERAMTKDNNLLGKFELT IPPAPRGVPQIEVTFDIDANGILNVSA++KSTGKENKITIT
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 192 NDRGRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLE 230
ND+GRLSKEDIERMV +AEKYKAEDEKQ+ +++KNSLE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
Score = 56.1 bits (135), Expect = 7e-10
Identities = 26/47 (55%), Positives = 28/47 (59%)
Query: 599 SEEVQDLLLLDVTPLSLGIETAGGFELTSIPPATSRLCLDEVTASIS 645
SE VQDLLLLDVTPLSLGIETAGG I T+ T +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTY 47
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 183 bits (466), Expect = 1e-55
Identities = 78/117 (66%), Positives = 89/117 (76%)
Query: 79 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK 138
LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 139 DNNLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRG 195
DN LG+F L I PAPRG+PQIEVTFDIDA+GIL+VSA +K++GKE KITI G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
Score = 43.0 bits (101), Expect = 1e-05
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
Query: 606 LLLDVTPLSLGIETAGGF------ELTSIPPATSRLC 636
LLLDVTPLSLGIET GG + T+IP S++
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVF 38
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 165 bits (418), Expect = 7e-49
Identities = 55/115 (47%), Positives = 74/115 (64%)
Query: 81 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 140
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 141 NLLGKFELTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRG 195
L +F L IP P G I VTF +DA+G+L+V+A+EKSTG E I + G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
Score = 42.7 bits (100), Expect = 1e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 608 LDVTPLSLGIETAGGFELTSIPPATSRLCLDEVTAS 643
+DV PLSLG+ET GG IP T+ +
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFT 36
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 131 bits (331), Expect = 3e-37
Identities = 56/83 (67%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Query: 225 AKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQK 284
+ LESY FNMK+T+EDEKL+ KI+ ++ +ILDKCN++I WLD NQ AEKEEFE +QK
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 285 ELEAICNPIITKLYQ-AGGAPGG 306
ELE +CNPIITKLYQ AGG PGG
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 125 bits (314), Expect = 1e-33
Identities = 53/74 (71%), Positives = 62/74 (83%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
++S+ VL KMK+TAE YLG+ V+ AVITVPAYFND+QRQATKD+G IAGL V RIIN
Sbjct: 109 APPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIIN 168
Query: 384 EPTAAAIAYGLDKK 397
EPTAAA+AYGLDK
Sbjct: 169 EPTAAALAYGLDKG 182
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 121 bits (305), Expect = 2e-32
Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 465
++ D+GGGT +V+++++ + + G++ D +V + + ++ +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGE 60
Query: 466 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFR 525
+ + + + ++ L G+ ++ E +
Sbjct: 61 RTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVV 115
Query: 526 GTMEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEA 582
+E V +L + I L GG + + + LLQ G + +S P A
Sbjct: 116 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTA 174
Query: 583 VAYGAAVQAAILHGDKSEEVQ 603
VA GA + + + +++Q
Sbjct: 175 VAKGAGMVLDKV--NILKKLQ 193
Score = 64.2 bits (155), Expect = 2e-12
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 1 MEPVEKSLRDAKMDKAQ---IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVA 57
+E V +L + I L GG + + + LLQ G + +S P AVA
Sbjct: 118 VESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVA 176
Query: 58 YGAAVQAAILHGDKSEEVQ 76
GA + + + +++Q
Sbjct: 177 KGAGMVLDKV--NILKKLQ 193
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 121 bits (304), Expect = 2e-32
Identities = 68/74 (91%), Positives = 71/74 (95%)
Query: 324 TIEEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIIN 383
EEVSSMVLTKMKE AEAYLGKTV+NAV+TVPAYFNDSQRQATKD+GTIAGLNVLRIIN
Sbjct: 112 YPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIIN 171
Query: 384 EPTAAAIAYGLDKK 397
EPTAAAIAYGLDKK
Sbjct: 172 EPTAAAIAYGLDKK 185
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 105 bits (262), Expect = 6e-27
Identities = 22/188 (11%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 465
++LI DLGG T D+S + + + GD+ LG + + +
Sbjct: 6 LDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART----- 58
Query: 466 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFR 525
SS A I + + + +
Sbjct: 59 ----------------------KGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMN 96
Query: 526 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAV 583
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 97 EALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDL 154
Query: 584 AYGAAVQA 591
G +
Sbjct: 155 VNGMYLIG 162
Score = 41.4 bits (96), Expect = 9e-05
Identities = 5/66 (7%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 1 MEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI--NPDEAVAY 58
+ +E+ + + + + ++++GG + + ++ ++ N +
Sbjct: 99 LRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVN 156
Query: 59 GAAVQA 64
G +
Sbjct: 157 GMYLIG 162
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 89.8 bits (223), Expect = 2e-22
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQ 256
L++++I++MV DAE D K + ++ +N + + + +E+ DK+ + ++T
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEE--AGDKLPADDKTA 58
Query: 257 ILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAG 301
I + L +K E K +EL + KL +
Sbjct: 59 IESALTALETALKGE---DKAAIEAKMQELAQVSQ----KLMEIA 96
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 87.5 bits (216), Expect = 8e-21
Identities = 22/182 (12%), Positives = 50/182 (27%), Gaps = 34/182 (18%)
Query: 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 465
++ D+G T DV + + D V + +G D + + +E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 466 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFR 525
DL + + + V+ E+L +
Sbjct: 64 DL---AQEALSHPVMFRQKQVGGP--------------------EVSGPILEDLANRIIE 100
Query: 526 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVA 584
+ + + ++ VGG + + + ++ G + + A A
Sbjct: 101 NIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANA 151
Query: 585 YG 586
G
Sbjct: 152 LG 153
Score = 35.9 bits (82), Expect = 0.006
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 4 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI-NPDEAVAYG 59
+E + + + ++ ++ VGG + + + ++ G + + A A G
Sbjct: 99 IENIRLNLRGEVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 79.9 bits (197), Expect = 9e-19
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQ 256
L+ +I M+ D+ Y +D K + + K ++ + + +S+AER
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD--AALLSAAERQV 58
Query: 257 ILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQA 300
I D + + + + + E K ++ +
Sbjct: 59 IDDAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQ 99
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 81.0 bits (199), Expect = 1e-18
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 326 EEVSSMVLTKMKETAEAYLGKTVSNAVITVPAYFNDSQRQATKDSGTIAGLNVLRIINEP 385
V+ ++L A+ + VI VP D +R+A D+G AG + + +I EP
Sbjct: 70 YTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEP 129
Query: 386 TAAAIAYGLD 395
AAAI G +
Sbjct: 130 MAAAI--GSN 137
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 41.4 bits (96), Expect = 1e-04
Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 406 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKK 465
+R V++ +LG + ++G+ +G + + F+ ++
Sbjct: 6 DRGVVVVNLGYNFTGLIA--YKNGVPI---KISYVPVGMKHVIKDVSAVLDTSFEES-ER 59
Query: 466 DLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNADLFR 525
+ T+ A+ E R L +T + L + AR E+ +
Sbjct: 60 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSV-------IIHARLREI-MSKSK 111
Query: 526 GTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 569
VE + + +VL GG +IP++ +L + F
Sbjct: 112 KFFREVEAKIVEEGEIG-IPGGVVLTGGGAKIPRINELATEVFK 154
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 34.1 bits (77), Expect = 0.039
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 521 ADLFRGTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 580
D+ G V + + D+V+ GG + V+ L++ G E+ S
Sbjct: 184 IDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQ 242
Query: 581 EAVAYGAAVQAA 592
A GAA+ A
Sbjct: 243 YNGALGAALYAY 254
Score = 30.2 bits (67), Expect = 0.79
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 2 EPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAA 61
V + + D+V+ GG + V+ L++ G E+ S A GAA
Sbjct: 192 RSVASRVIGLANRVGIVKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAA 250
Query: 62 VQAA 65
+ A
Sbjct: 251 LYAY 254
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 31.5 bits (71), Expect = 0.25
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 171 GILNVSAIEKSTGKENKI-TITNDRG--RLSKEDIERMVNDAEKYKAEDEKQK 220
I + + +S GK ++ + D+ L+ E+IE+ V + EK K E+EK+K
Sbjct: 190 VIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKK 242
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium
laminosum [TaxId: 32059]}
Length = 62
Score = 28.9 bits (65), Expect = 0.28
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 175 VSAIEKSTGKENKITITNDRGRLSKEDIER----MVNDAEKYKAED 216
++AI K+ ++ I + G + I +V++ E+ A
Sbjct: 11 ITAIAKADDGSAEVKIRTEDGTTIVDKIPAGPELIVSEGEEVAAGA 56
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 27.0 bits (60), Expect = 1.0
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 16/60 (26%)
Query: 260 KCNDVIKWLDSNQLAEKEEFEDKQKELEAICNPIITKLYQAGGAPGGFPGAPGAAPGAGA 319
+C K L+S LA+K+ E C K + P GF G GAGA
Sbjct: 1 RCAKCGKSLESTTLADKDG--------EIYCKGCYAKNF----GPKGF----GFGQGAGA 44
>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 115
Score = 28.4 bits (63), Expect = 1.3
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 395 DKKVGSAAGSGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTA 437
D + + G I + G + + + DG ++V+ T
Sbjct: 40 DSRPLTQVGGDHIKAHIANPSGASTECFVTDNADGTYQVEYTP 82
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 29.3 bits (65), Expect = 2.1
Identities = 32/259 (12%), Positives = 69/259 (26%), Gaps = 19/259 (7%)
Query: 180 KSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAEDEKQKA----VITAKNSLESYCFN 235
I+ + I+ +V + A+ + LES +
Sbjct: 349 TRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLD 408
Query: 236 MKSTMEDEKLKDKISSAERTQILDKCNDVIKW---------LDSNQLAEKEEFEDKQKEL 286
+E + K S + D + ++ L S K+ ++ +
Sbjct: 409 TFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYF 468
Query: 287 EAICNPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEEVSSMVLTKMKETAEAYLGK 346
+ I Y + + + S++ L+ + E L
Sbjct: 469 KENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQG 528
Query: 347 TVSNAVITVPAYFNDSQ-RQATKDSGTIAGLNVLRIINEPTAAAIAYGLDKKVGSAAGSG 405
V + + + + + T I N T + Y K +
Sbjct: 529 GVGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRK 588
Query: 406 ERN-----VLIFDLGGGTF 419
+ L+F +GGG +
Sbjct: 589 PKRQSYNKSLVFVVGGGNY 607
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 28.3 bits (62), Expect = 2.2
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKST 239
+ ++ ++ A K KA+ + K + F ST
Sbjct: 14 FTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDST 56
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga
maritima [TaxId: 2336]}
Length = 152
Score = 27.9 bits (61), Expect = 2.5
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKST 239
S E+I +++ +++ K E+ + K + F +ST
Sbjct: 16 FSPEEIRYLLDISKQVKMENRSKLRTERFKGMTLAMIFEKRST 58
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 27.9 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKST 239
SKEDIE ++ AE+ + E +++ + AK + + F ST
Sbjct: 13 FSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPST 55
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 28.6 bits (63), Expect = 3.0
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 18/80 (22%)
Query: 651 PGLCLPSGSQLVREDKINITKTVIFVSCSQRRCIERYVEMI----------------AIA 694
PG C + + + T FV+C+ R + Y I
Sbjct: 237 PG-CQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQ 295
Query: 695 GRCTRHRRMRYQKASGHYGD 714
C K GHY D
Sbjct: 296 NDCFPCPEEGCPKM-GHYAD 314
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 28.3 bits (62), Expect = 3.4
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 380 RIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLGGGTFDVSIL 424
R + EP+ A G+ K + GER I L G + L
Sbjct: 278 RAVAEPSGALALAGMKKYIALHNIRGERLAHI--LSGANVNFHGL 320
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis
[TaxId: 1423]}
Length = 112
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 194 RGRLSKEDIERMVNDAEKYKAEDEKQKA 221
LSKE+ E ++ ++ E QKA
Sbjct: 34 DKGLSKEEGEAVMRICDELSEELATQKA 61
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102
{Shewanella loihica [TaxId: 359303]}
Length = 125
Score = 27.1 bits (60), Expect = 3.6
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 195 GRLSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYC-FNMKSTMEDEKLK------- 246
G+L+ ED E+M E A + + V + ++ + +D KL
Sbjct: 27 GKLTHEDYEQMTPLLESALAGIKTPEIVALID--ITELDGLSLHAAWDDLKLGLKHGKEF 84
Query: 247 DKISSAERTQILDKCNDVIKWLDSNQLAEKEEFEDKQKELEAIC 290
+++ + ++ + V W E + FEDK+ L+ +C
Sbjct: 85 KRVAIIGQGELQEWATRVANWFTP---GEFKFFEDKRDALDWLC 125
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 27.7 bits (61), Expect = 3.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 377 NVLRIINEPTAAAIAYGLDKKVGSAAGSGERNVLIFDLG 415
N+LR+ E Y L +V S G R+ ++ D G
Sbjct: 15 NLLRLPAEFGCPVWVYVLITQVRSVKQMGSRHFVLVDAG 53
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 27.7 bits (61), Expect = 4.8
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 212 YKAEDEKQKAVITAKNSLESYCFNMKSTMEDEKLKDKISSAERTQILDKCNDVIKWLDSN 271
+ + + YC + +E K++ K E KCN +W+
Sbjct: 191 EDDIENIPQFFRWFSEWGDDYCQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKK 250
Query: 272 QLAEKEEFEDKQKE 285
KEE+ KQ +
Sbjct: 251 ----KEEYN-KQAK 259
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 24.9 bits (55), Expect = 4.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 186 NKITITNDRGRLSKEDIERMVN 207
+ T GR+ KEDI+ +
Sbjct: 20 RLVQGTGKNGRVLKEDIDAFLA 41
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 27.0 bits (59), Expect = 5.1
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQ 219
LS++D+ ++ A K KA + +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
2285]}
Length = 146
Score = 26.7 bits (58), Expect = 6.0
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKN 227
S++++E + +KY + +++ K
Sbjct: 10 FSRDELEDIFALTDKYSKNLNDTRKILSGKT 40
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 26.3 bits (58), Expect = 6.1
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 177 AIEKSTGKENKITITNDRGRLSKEDIERMVNDAEKYKAE 215
+IE + ENK+ + + + ++++ + +
Sbjct: 45 SIECKSTWENKVKV-------KEHQVRKLLDFLSMFTMK 76
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 26.3 bits (58), Expect = 6.3
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 300 AGGAPGGFPGAPGAAPGAGAGPGPTIEEVSSMVLTKM 336
G GA G AP A +V+ +L K
Sbjct: 21 GGAQAPATTGAAGTAPTAPQPTAAPSIDVAP-ILDKA 56
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation
(N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Length = 57
Score = 24.9 bits (54), Expect = 6.6
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 291 NPIITKLYQAGGAPGGFPGAPGAAPGAGAGPGPTIEE 327
++ KL G P A AAP AGA G EE
Sbjct: 19 AELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEE 55
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide
succinyltransferase {Escherichia coli [TaxId: 562]}
Length = 39
Score = 24.1 bits (53), Expect = 8.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 186 NKITITNDRGRLSKEDIERMVN 207
+ I T GRL++ED+E+ +
Sbjct: 17 SAIKGTGVGGRLTREDVEKHLA 38
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 27.3 bits (60), Expect = 8.5
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 148 LTSIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTGKENKITITNDRGRLSKEDIERMVN 207
+ ++P P + FD D G V ++ KE GRL + R++
Sbjct: 5 VKAVPFPPSHRLTAKEVFDND--GKPRVDILKAHLMKE---------GRLEESVALRIIT 53
Query: 208 DAEK 211
+
Sbjct: 54 EGAS 57
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 26.9 bits (59), Expect = 8.7
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 66 ILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 119
I G +++ D +DV LG E G+ A N K Q F
Sbjct: 273 ITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNGENIDHGQKANQNFKMVP 326
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 26.7 bits (59), Expect = 8.9
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 411 IFDLGGGTFDVSILTIEDGIFEVK-STAGD-------THLGGEDFD 448
I DLG G+ D SI+ + I + AGD LG ED
Sbjct: 8 ILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRY 53
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 150
Score = 26.1 bits (57), Expect = 9.5
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 197 LSKEDIERMVNDAEKYKAEDEKQKAVITAKNSLESYCFNMKST 239
+ E+I ++ A+ +K + K + + F ST
Sbjct: 15 YTAEEIWTILETAKMFKIWQKIGKPHRLLEGKTLAMIFQKPST 57
>d1woqa2 c.55.1.10 (A:140-263) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 124
Score = 25.6 bits (56), Expect = 10.0
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 19 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 68
++ GG ++ + L + + ++ +EA GAA++ A+ H
Sbjct: 77 ELFIVGGGISKRAD--EYLPNLRLRTPIVPAVLRNEAGIVGAAIEIALQH 124
Score = 25.6 bits (56), Expect = 10.0
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 546 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILH 595
++ GG ++ + L + + ++ +EA GAA++ A+ H
Sbjct: 77 ELFIVGGGISKRAD--EYLPNLRLRTPIVPAVLRNEAGIVGAAIEIALQH 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.367
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,531,569
Number of extensions: 120872
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 56
Length of query: 714
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 622
Effective length of database: 1,144,436
Effective search space: 711839192
Effective search space used: 711839192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.0 bits)