BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5548
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 56/83 (67%)
Query: 98 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGV 157
IL GDKSE VQD GIETAGGVMT LIKRN YSDNQPGV
Sbjct: 379 ILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGV 438
Query: 158 LIQVYEGERAMTKDNNLLGKFKM 180
LIQVYEGERAMTKDNNLLGKF++
Sbjct: 439 LIQVYEGERAMTKDNNLLGKFEL 461
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 56/83 (67%)
Query: 98 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGV 157
IL GDKSE VQD GIETAGGVMT LIKRN YSDNQPGV
Sbjct: 379 ILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGV 438
Query: 158 LIQVYEGERAMTKDNNLLGKFKM 180
LIQVYEGERAMTKDNNLLGKF++
Sbjct: 439 LIQVYEGERAMTKDNNLLGKFEL 461
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein
From Rattus Norvegicus In Post-Atp Hydrolysis State
Length = 543
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 56/83 (67%)
Query: 98 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGV 157
IL GDKSE VQD GIETAGGVMT LIKRN YSDNQPGV
Sbjct: 379 ILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGV 438
Query: 158 LIQVYEGERAMTKDNNLLGKFKM 180
LIQVYEGERAMTKDNNLLGKF++
Sbjct: 439 LIQVYEGERAMTKDNNLLGKFEL 461
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
pdb|7HSC|A Chain A, High Resolution Solution Structure Of The Heat Shock
Cognate-70 Kd Substrate Binding Domain Obtained By
Multidimensional Nmr Techniques
Length = 159
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 51/77 (66%)
Query: 104 SEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYE 163
SE VQD GIETAGGVMT LIKRN YSDNQPGVLIQVYE
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 164 GERAMTKDNNLLGKFKM 180
GERAMTKDNNLLGKF++
Sbjct: 61 GERAMTKDNNLLGKFEL 77
>pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2
Protein From Saccharomyces Cerevisiae
Length = 152
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 42/60 (70%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LIKRN DNQP V+I+VYEGERAM+KDNNLLGKF++
Sbjct: 11 GIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFEL 70
>pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans.
pdb|3DOB|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans
Length = 152
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 42/60 (70%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIETAGGVMT LI RN Y+DNQPGV IQVYEGERAMT+DN+ LG F++
Sbjct: 11 GIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFEL 70
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%)
Query: 106 EVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGE 165
EV+D GIET GGV T LI+RN +DNQ V I V +GE
Sbjct: 354 EVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGE 413
Query: 166 RAMTKDNNLLGKFKM 180
R M DN LG+F++
Sbjct: 414 RPMAADNKSLGRFQL 428
>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D
Precursor From C.Elegans
Length = 152
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI RN +D+Q V I +YEGER M DN+ LG F +
Sbjct: 11 GIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDV 70
>pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|C Chain C, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans.
pdb|3DQG|D Chain D, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F,
Mitochondrial Precursor, From Caenorhabditis Elegans
Length = 151
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GG+MT LI RN +D Q V I+V++GER M N LLG+F +
Sbjct: 11 GIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSL 70
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI +N DNQ V I V +GER DN LG+F +
Sbjct: 12 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNL 71
Query: 181 E 181
+
Sbjct: 72 D 72
>pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPO|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPP|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPP|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPQ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|E Chain E, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|F Chain F, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3QNJ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|3QNJ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|4E81|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
pdb|4E81|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
Length = 219
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI +N DNQ V I V +GER DN LG+F +
Sbjct: 12 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNL 71
Query: 181 E 181
+
Sbjct: 72 D 72
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 98 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGV 157
+L GD V+D GIET GGVMT LI +N DNQ V
Sbjct: 381 VLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAV 436
Query: 158 LIQVYEGERAMTKDNNLLGKFKME 181
I V +GER DN LG+F ++
Sbjct: 437 TIHVLQGERKRAADNKSLGQFNLD 460
>pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak,
Minimized Average Structure
pdb|2BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI +N DNQ V I V +GER DN LG+F +
Sbjct: 30 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNL 89
Query: 181 E 181
+
Sbjct: 90 D 90
>pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In
The Apo Form
Length = 115
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI +N DNQ V I V +GER DN LG+F +
Sbjct: 8 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNL 67
Query: 181 E 181
+
Sbjct: 68 D 68
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
Length = 219
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI +N DNQ V I V +GER DN LG+F +
Sbjct: 12 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNL 71
Query: 181 E 181
+
Sbjct: 72 D 72
>pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak
Bound To The Peptide Nrllltg
Length = 135
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGVMT LI +N DNQ V I V +GER DN LG+F +
Sbjct: 28 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNL 87
Query: 181 E 181
+
Sbjct: 88 D 88
>pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
pdb|3N8E|B Chain B, Substrate Binding Domain Of The Human Heat Shock 70kda
Prote (Mortalin)
Length = 182
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
GIET GGV T LI RN +D Q V I+V +GER M DN LLG+F +
Sbjct: 31 GIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTL 90
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 98 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGV 157
+L GD V+D GIET GGV T LI +N DNQ V
Sbjct: 381 VLTGD----VKDVLLLDVTPLSLGIETXGGVXTTLIAKNTTIPTKHSQVFSTAEDNQSAV 436
Query: 158 LIQVYEGERAMTKDNNLLGKFKME 181
I V +GER DN LG+F ++
Sbjct: 437 TIHVLQGERKRAADNKSLGQFNLD 460
>pdb|2P32|A Chain A, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|B Chain B, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|C Chain C, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|D Chain D, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|E Chain E, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
pdb|2P32|F Chain F, Crystal Structure Of The C-Terminal 10 Kda Subdomain
From C. Elegans Hsp70
Length = 120
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 30 VIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66
++KWLDSN + FE +QK + PII+KLYQ+
Sbjct: 58 ILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 94
>pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu
Recognition Peptide Elppvkihc
Length = 227
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 121 GIETAGGVMTALIKRNXXXXXXXXXXXXXYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
G+ET GG++ +I RN + D Q + I V +GER + +D L +F +
Sbjct: 9 GLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFAL 68
>pdb|1UD0|A Chain A, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
pdb|1UD0|B Chain B, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
pdb|1UD0|C Chain C, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
pdb|1UD0|D Chain D, Crystal Structure Of The C-Terminal 10-Kda Subdomain Of
Hsc70
Length = 113
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 30 VIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65
+I WLD N + FE +QK + PIITKLYQ
Sbjct: 44 IISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 79
>pdb|3LOF|A Chain A, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|B Chain B, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|C Chain C, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|D Chain D, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|E Chain E, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b.
pdb|3LOF|F Chain F, C-Terminal Domain Of Human Heat Shock 70kda Protein 1b
Length = 113
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 1 MKSYNGRRKAERQD------LASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS 54
++SY K+ +D ++ A +K + VI WLD+N + FE K+K +
Sbjct: 14 LESYAFNXKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQ 73
Query: 55 HLYPIITKLY 64
PII+ LY
Sbjct: 74 VCNPIISGLY 83
>pdb|2LMG|A Chain A, Solution Structure Of The C-Terminal Domain (537-610) Of
Human Heat Shock Protein 70
Length = 75
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 1 MKSYNGRRKAERQD------LASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS 54
++SY K+ +D ++ A +K + VI WLD+N + FE K+K +
Sbjct: 7 LESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQ 66
Query: 55 HLYPIITKL 63
PII+ L
Sbjct: 67 VCNPIISGL 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,294,578
Number of Sequences: 62578
Number of extensions: 132184
Number of successful extensions: 165
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 24
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)