Query psy5548
Match_columns 183
No_of_seqs 195 out of 1298
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 3.5E-44 7.5E-49 298.4 14.2 170 5-182 324-493 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 2.5E-39 5.4E-44 290.8 17.3 166 6-182 316-481 (657)
3 KOG0101|consensus 100.0 4.4E-38 9.5E-43 275.7 15.1 170 7-182 298-467 (620)
4 TIGR01991 HscA Fe-S protein as 100.0 3.1E-37 6.6E-42 275.7 19.5 168 6-182 275-442 (599)
5 PRK01433 hscA chaperone protei 100.0 4.8E-37 1E-41 273.8 19.8 163 7-182 274-436 (595)
6 PRK13411 molecular chaperone D 100.0 3.3E-37 7.2E-42 277.7 17.8 167 6-182 290-456 (653)
7 PRK13410 molecular chaperone D 100.0 4.1E-37 8.8E-42 277.3 17.2 165 7-182 292-456 (668)
8 PTZ00009 heat shock 70 kDa pro 100.0 5.7E-37 1.2E-41 276.3 17.4 171 6-182 295-465 (653)
9 PRK05183 hscA chaperone protei 100.0 1.1E-36 2.3E-41 272.8 18.1 166 8-182 293-458 (616)
10 PLN03184 chloroplast Hsp70; Pr 100.0 1.5E-36 3.3E-41 274.0 17.8 165 7-182 329-493 (673)
11 PTZ00400 DnaK-type molecular c 100.0 1.9E-36 4.1E-41 273.1 16.6 166 6-182 330-495 (663)
12 CHL00094 dnaK heat shock prote 100.0 4.6E-36 1E-40 269.2 18.6 165 7-182 292-456 (621)
13 PRK00290 dnaK molecular chaper 100.0 6.9E-36 1.5E-40 268.4 18.9 166 6-182 289-454 (627)
14 TIGR02350 prok_dnaK chaperone 100.0 8.3E-36 1.8E-40 266.6 18.2 165 7-182 288-452 (595)
15 KOG0102|consensus 100.0 1.6E-36 3.5E-41 259.1 6.8 165 7-182 317-481 (640)
16 PF00012 HSP70: Hsp70 protein; 100.0 2.2E-32 4.8E-37 244.1 17.1 167 7-182 292-458 (602)
17 COG0443 DnaK Molecular chapero 100.0 4.5E-31 9.7E-36 234.7 12.7 165 7-182 273-437 (579)
18 KOG0103|consensus 99.9 5.1E-25 1.1E-29 193.1 15.9 164 6-182 296-465 (727)
19 KOG0104|consensus 99.9 2E-24 4.4E-29 190.4 9.4 141 4-152 325-473 (902)
20 PRK11678 putative chaperone; P 99.6 6.1E-15 1.3E-19 128.2 9.3 83 7-99 366-448 (450)
21 PRK13928 rod shape-determining 99.5 1.6E-13 3.6E-18 115.1 8.4 88 7-100 236-325 (336)
22 PRK13927 rod shape-determining 99.3 3.3E-12 7.1E-17 107.0 8.4 86 7-98 237-324 (334)
23 TIGR00904 mreB cell shape dete 99.2 2.6E-11 5.6E-16 101.7 8.4 85 8-98 241-327 (333)
24 PRK13930 rod shape-determining 99.2 3.1E-11 6.8E-16 101.0 7.5 87 7-99 241-329 (335)
25 PRK13929 rod-share determining 99.2 3.8E-11 8.2E-16 100.9 7.8 84 7-96 239-324 (335)
26 PRK15080 ethanolamine utilizat 99.0 7.5E-10 1.6E-14 90.4 7.5 74 11-96 194-267 (267)
27 TIGR02529 EutJ ethanolamine ut 98.9 1.5E-09 3.3E-14 87.3 5.8 72 11-94 167-238 (239)
28 TIGR01174 ftsA cell division p 98.9 4.8E-09 1E-13 89.2 7.4 87 6-95 276-371 (371)
29 PRK09472 ftsA cell division pr 98.7 7.2E-08 1.6E-12 83.5 8.3 89 8-98 286-388 (420)
30 PF06723 MreB_Mbl: MreB/Mbl pr 98.1 2.5E-06 5.4E-11 71.6 2.9 84 7-96 234-319 (326)
31 PRK13917 plasmid segregation p 97.7 0.00018 3.8E-09 60.9 8.6 77 12-102 264-340 (344)
32 PF02782 FGGY_C: FGGY family o 97.2 0.0017 3.6E-08 50.0 7.4 48 44-98 149-196 (198)
33 PRK15027 xylulokinase; Provisi 97.0 0.0032 6.9E-08 55.5 8.4 53 44-102 386-438 (484)
34 TIGR00241 CoA_E_activ CoA-subs 97.0 0.0026 5.6E-08 51.3 7.2 66 17-94 181-247 (248)
35 COG0849 ftsA Cell division ATP 96.9 0.0039 8.5E-08 54.1 7.9 90 8-99 285-381 (418)
36 TIGR03192 benz_CoA_bzdQ benzoy 96.9 0.0049 1.1E-07 51.0 7.9 46 47-98 242-288 (293)
37 COG1077 MreB Actin-like ATPase 96.7 0.0037 8.1E-08 52.1 5.8 88 7-100 244-333 (342)
38 TIGR01315 5C_CHO_kinase FGGY-f 96.7 0.0063 1.4E-07 54.5 7.7 85 9-101 409-493 (541)
39 TIGR02261 benz_CoA_red_D benzo 96.7 0.0079 1.7E-07 49.1 7.3 45 47-96 214-262 (262)
40 TIGR01312 XylB D-xylulose kina 96.6 0.013 2.7E-07 51.4 8.8 52 44-102 390-441 (481)
41 PLN02669 xylulokinase 96.6 0.0083 1.8E-07 54.0 7.5 49 43-98 444-492 (556)
42 TIGR03286 methan_mark_15 putat 96.4 0.014 3E-07 50.3 7.3 45 47-97 358-402 (404)
43 TIGR02628 fuculo_kin_coli L-fu 96.4 0.018 3.9E-07 50.5 8.2 51 44-101 393-443 (465)
44 PRK13317 pantothenate kinase; 96.3 0.011 2.3E-07 48.7 6.1 50 43-97 221-273 (277)
45 PRK04123 ribulokinase; Provisi 96.3 0.01 2.2E-07 53.2 6.3 51 44-101 438-489 (548)
46 TIGR01311 glycerol_kin glycero 96.2 0.011 2.3E-07 52.3 6.2 51 44-101 399-449 (493)
47 TIGR02259 benz_CoA_red_A benzo 96.2 0.018 3.9E-07 49.6 7.1 46 46-96 383-432 (432)
48 TIGR01234 L-ribulokinase L-rib 96.2 0.027 5.9E-07 50.4 8.7 51 44-101 435-486 (536)
49 PRK10331 L-fuculokinase; Provi 96.2 0.029 6.2E-07 49.3 8.4 51 44-101 389-439 (470)
50 PRK00047 glpK glycerol kinase; 96.2 0.013 2.9E-07 51.8 6.3 51 44-101 403-453 (498)
51 PTZ00294 glycerol kinase-like 96.1 0.016 3.6E-07 51.3 6.8 51 44-101 406-456 (504)
52 KOG2517|consensus 96.1 0.025 5.4E-07 50.2 7.5 81 7-102 385-465 (516)
53 PF11104 PilM_2: Type IV pilus 96.0 0.026 5.7E-07 47.5 7.3 51 16-69 245-299 (340)
54 TIGR01314 gntK_FGGY gluconate 95.9 0.02 4.4E-07 50.7 6.1 51 44-101 401-451 (505)
55 COG1924 Activator of 2-hydroxy 95.8 0.045 9.7E-07 46.7 7.6 45 48-98 346-390 (396)
56 PLN02295 glycerol kinase 95.8 0.03 6.5E-07 49.8 6.8 51 44-101 412-462 (512)
57 TIGR02627 rhamnulo_kin rhamnul 95.7 0.073 1.6E-06 46.6 8.7 51 44-102 387-437 (454)
58 TIGR03739 PRTRC_D PRTRC system 95.7 0.048 1E-06 45.6 7.3 48 42-96 271-318 (320)
59 cd00012 ACTIN Actin; An ubiqui 95.7 0.005 1.1E-07 52.3 1.3 69 25-98 269-347 (371)
60 PRK10939 autoinducer-2 (AI-2) 95.4 0.04 8.6E-07 49.1 6.4 51 44-101 409-459 (520)
61 TIGR01175 pilM type IV pilus a 95.4 0.043 9.2E-07 46.1 6.0 52 18-69 255-307 (348)
62 PRK10640 rhaB rhamnulokinase; 95.3 0.095 2.1E-06 46.2 8.2 51 44-102 375-425 (471)
63 COG1070 XylB Sugar (pentulose 94.9 0.17 3.6E-06 45.1 8.7 82 10-101 370-451 (502)
64 PF00022 Actin: Actin; InterP 94.8 0.024 5.3E-07 48.3 3.0 69 25-98 290-367 (393)
65 PF06406 StbA: StbA protein; 93.9 0.27 5.8E-06 41.1 7.4 45 42-93 270-316 (318)
66 KOG2531|consensus 93.8 0.092 2E-06 45.9 4.3 50 42-98 440-489 (545)
67 PF03702 UPF0075: Uncharacteri 93.7 0.27 5.9E-06 42.1 7.1 79 16-99 260-338 (364)
68 COG4820 EutJ Ethanolamine util 93.5 0.16 3.4E-06 40.1 4.9 52 18-76 206-257 (277)
69 PF01869 BcrAD_BadFG: BadF/Bad 92.8 0.63 1.4E-05 37.7 7.7 66 22-96 202-271 (271)
70 COG1069 AraB Ribulose kinase [ 91.7 0.43 9.4E-06 42.6 5.7 62 29-101 420-481 (544)
71 smart00268 ACTIN Actin. ACTIN 91.6 0.05 1.1E-06 46.2 -0.2 69 25-98 271-347 (373)
72 PRK09585 anmK anhydro-N-acetyl 90.1 2 4.4E-05 36.8 8.2 77 17-99 263-339 (365)
73 TIGR03281 methan_mark_12 putat 89.5 3.8 8.2E-05 34.3 9.1 50 45-102 263-315 (326)
74 TIGR00143 hypF [NiFe] hydrogen 88.3 0.91 2E-05 42.3 5.2 53 43-97 657-711 (711)
75 PTZ00281 actin; Provisional 88.0 0.093 2E-06 44.9 -1.3 68 26-98 275-350 (376)
76 PTZ00452 actin; Provisional 87.1 0.23 4.9E-06 42.6 0.6 70 26-98 274-349 (375)
77 TIGR00555 panK_eukar pantothen 87.1 1.7 3.6E-05 35.9 5.6 72 16-94 204-278 (279)
78 PTZ00004 actin-2; Provisional 86.2 0.18 3.9E-06 43.1 -0.6 67 26-97 277-351 (378)
79 PTZ00466 actin-like protein; P 85.5 0.25 5.5E-06 42.4 0.0 69 26-97 279-353 (380)
80 PRK00976 hypothetical protein; 85.4 3.9 8.5E-05 34.5 7.0 52 43-102 262-315 (326)
81 PF08841 DDR: Diol dehydratase 84.8 1.4 3.1E-05 36.4 4.0 55 41-95 272-328 (332)
82 PF02543 CmcH_NodU: Carbamoylt 84.6 5.2 0.00011 34.2 7.6 81 11-101 134-216 (360)
83 PTZ00280 Actin-related protein 84.4 0.63 1.4E-05 40.3 2.0 45 25-69 292-337 (414)
84 COG0554 GlpK Glycerol kinase [ 82.5 5.1 0.00011 35.5 6.7 68 24-102 386-453 (499)
85 PRK03011 butyrate kinase; Prov 81.2 3.2 7E-05 35.4 5.0 52 43-102 294-348 (358)
86 PRK09604 UGMP family protein; 81.1 4.7 0.0001 34.0 5.9 82 16-101 228-311 (332)
87 PF07318 DUF1464: Protein of u 80.0 6.9 0.00015 33.3 6.5 55 42-102 258-319 (343)
88 TIGR03723 bact_gcp putative gl 80.0 3.8 8.2E-05 34.3 5.0 73 17-93 234-308 (314)
89 PF07520 SrfB: Virulence facto 79.9 10 0.00022 36.7 8.2 84 9-98 734-834 (1002)
90 COG5277 Actin and related prot 79.0 1.1 2.3E-05 39.5 1.4 55 43-97 361-417 (444)
91 KOG0681|consensus 78.1 2.9 6.2E-05 37.6 3.8 73 26-98 539-614 (645)
92 PRK09605 bifunctional UGMP fam 76.7 7 0.00015 34.9 6.0 82 16-101 219-302 (535)
93 TIGR00067 glut_race glutamate 75.2 8.1 0.00018 31.2 5.5 54 27-92 158-211 (251)
94 COG4972 PilM Tfp pilus assembl 74.8 7 0.00015 33.1 5.1 67 18-94 260-330 (354)
95 PRK05082 N-acetylmannosamine k 72.2 7.5 0.00016 31.7 4.7 68 22-96 213-286 (291)
96 PRK00865 glutamate racemase; P 71.8 11 0.00024 30.6 5.5 56 26-93 162-217 (261)
97 KOG0679|consensus 71.4 4.4 9.5E-05 34.9 3.1 54 44-97 341-398 (426)
98 PTZ00340 O-sialoglycoprotein e 69.3 7.1 0.00015 33.2 4.0 52 16-69 237-288 (345)
99 PRK13310 N-acetyl-D-glucosamin 69.0 11 0.00023 31.0 4.9 49 43-96 244-300 (303)
100 COG0533 QRI7 Metal-dependent p 67.9 18 0.0004 30.7 6.1 54 9-68 228-285 (342)
101 COG3426 Butyrate kinase [Energ 67.2 19 0.00041 30.1 5.9 53 42-102 294-349 (358)
102 TIGR00744 ROK_glcA_fam ROK fam 66.1 8.3 0.00018 31.7 3.8 69 22-97 231-309 (318)
103 PRK09557 fructokinase; Reviewe 63.2 13 0.00028 30.5 4.4 49 43-96 243-299 (301)
104 PF00036 EF-hand_1: EF hand; 62.0 7.5 0.00016 20.4 1.8 18 5-22 12-29 (29)
105 KOG0797|consensus 61.2 3.9 8.4E-05 36.6 0.9 75 24-100 508-591 (618)
106 KOG0676|consensus 56.1 8.1 0.00018 33.3 2.0 27 42-68 288-314 (372)
107 COG2377 Predicted molecular ch 55.8 86 0.0019 27.0 8.0 57 42-99 288-344 (371)
108 KOG2872|consensus 55.1 48 0.001 27.8 6.2 72 8-89 218-289 (359)
109 COG4020 Uncharacterized protei 53.9 36 0.00078 28.0 5.2 35 90-129 141-175 (332)
110 TIGR03722 arch_KAE1 universal 53.7 46 0.00099 27.8 6.2 46 44-91 242-289 (322)
111 PLN03172 chalcone synthase fam 53.6 34 0.00074 29.5 5.5 46 23-69 103-149 (393)
112 TIGR01198 pgl 6-phosphoglucono 53.4 28 0.00061 27.7 4.6 44 16-65 6-49 (233)
113 cd00327 cond_enzymes Condensin 53.3 78 0.0017 24.6 7.2 46 24-70 9-56 (254)
114 PRK14878 UGMP family protein; 53.0 44 0.00096 28.0 6.0 50 17-68 216-265 (323)
115 KOG0680|consensus 50.8 9.2 0.0002 32.4 1.5 27 42-68 315-341 (400)
116 COG0796 MurI Glutamate racemas 50.8 47 0.001 27.3 5.5 41 44-93 177-217 (269)
117 PLN03170 chalcone synthase; Pr 50.5 38 0.00082 29.3 5.3 47 23-70 107-154 (401)
118 PF02801 Ketoacyl-synt_C: Beta 50.5 19 0.00041 25.3 2.9 48 23-71 24-73 (119)
119 COG0533 QRI7 Metal-dependent p 50.2 37 0.0008 28.9 5.0 49 16-65 44-92 (342)
120 PRK09698 D-allose kinase; Prov 49.0 28 0.00061 28.4 4.1 50 43-97 235-295 (302)
121 PRK07515 3-oxoacyl-(acyl carri 48.5 20 0.00043 30.4 3.3 38 20-58 267-304 (372)
122 PF14574 DUF4445: Domain of un 48.1 45 0.00097 29.2 5.3 62 7-70 292-354 (412)
123 TIGR03722 arch_KAE1 universal 48.0 29 0.00062 29.0 4.1 43 18-61 41-83 (322)
124 PLN03173 chalcone synthase; Pr 47.6 46 0.00099 28.7 5.4 45 24-69 104-149 (391)
125 PF08518 GIT_SHD: Spa2 homolog 46.9 24 0.00051 19.1 2.2 19 9-27 7-25 (31)
126 PRK14878 UGMP family protein; 45.7 24 0.00052 29.6 3.3 45 17-62 39-83 (323)
127 TIGR03723 bact_gcp putative gl 44.4 32 0.0007 28.7 3.8 48 17-65 44-91 (314)
128 TIGR02707 butyr_kinase butyrat 43.8 34 0.00075 29.1 3.9 51 44-102 293-346 (351)
129 cd01400 6PGL 6PGL: 6-Phosphogl 43.7 34 0.00073 26.9 3.7 44 18-67 3-46 (219)
130 TIGR00329 gcp_kae1 metallohydr 43.5 42 0.00091 27.8 4.4 48 17-65 43-90 (305)
131 PTZ00340 O-sialoglycoprotein e 42.4 41 0.00088 28.7 4.1 47 17-64 44-90 (345)
132 TIGR00329 gcp_kae1 metallohydr 42.1 24 0.00053 29.2 2.7 50 17-68 233-282 (305)
133 PF00814 Peptidase_M22: Glycop 42.1 21 0.00046 29.1 2.3 46 19-65 26-71 (268)
134 PRK06895 putative anthranilate 41.9 39 0.00085 25.7 3.7 48 43-102 42-92 (190)
135 PF13202 EF-hand_5: EF hand; P 41.4 25 0.00054 17.6 1.7 14 5-18 11-24 (25)
136 TIGR03281 methan_mark_12 putat 41.3 1.2E+02 0.0026 25.6 6.6 35 90-129 135-169 (326)
137 cd00825 decarbox_cond_enzymes 40.9 1.4E+02 0.003 24.3 7.2 26 24-50 13-42 (332)
138 PF01182 Glucosamine_iso: Gluc 40.8 71 0.0015 24.6 5.0 42 20-67 3-44 (199)
139 PLN02377 3-ketoacyl-CoA syntha 40.4 88 0.0019 28.1 6.1 52 18-70 168-220 (502)
140 PRK09604 UGMP family protein; 39.3 56 0.0012 27.5 4.5 46 19-65 48-93 (332)
141 PRK12879 3-oxoacyl-(acyl carri 38.5 72 0.0016 26.2 5.0 42 23-68 224-265 (325)
142 PLN03168 chalcone synthase; Pr 38.2 69 0.0015 27.6 5.0 50 19-69 98-148 (389)
143 COG4457 SrfB Uncharacterized p 37.4 75 0.0016 29.9 5.2 58 43-100 777-848 (1014)
144 PRK06840 hypothetical protein; 37.2 92 0.002 25.8 5.5 46 23-69 54-102 (339)
145 KOG3413|consensus 36.7 73 0.0016 23.8 4.2 32 8-39 40-71 (156)
146 PRK09605 bifunctional UGMP fam 35.9 63 0.0014 28.9 4.6 46 18-64 44-89 (535)
147 PF08392 FAE1_CUT1_RppA: FAE1/ 35.1 87 0.0019 26.1 4.9 43 26-69 87-130 (290)
148 cd08681 C2_fungal_Inn1p-like C 34.9 1.5E+02 0.0032 20.2 6.0 47 132-181 39-86 (118)
149 PTZ00285 glucosamine-6-phospha 34.8 88 0.0019 25.1 4.9 46 15-66 9-55 (253)
150 cd00827 init_cond_enzymes "ini 34.4 2.2E+02 0.0047 23.1 7.3 47 22-69 48-96 (324)
151 cd02198 YjgH_like YjgH belongs 34.3 88 0.0019 21.5 4.2 47 23-70 35-83 (111)
152 KOG2708|consensus 33.7 1.8E+02 0.0039 23.7 6.3 74 9-94 224-300 (336)
153 cd01741 GATase1_1 Subgroup of 33.5 59 0.0013 24.5 3.5 49 42-101 44-100 (188)
154 cd01744 GATase1_CPSase Small c 33.3 63 0.0014 24.3 3.6 48 43-101 38-88 (178)
155 PRK09258 3-oxoacyl-(acyl carri 33.1 1.3E+02 0.0028 24.9 5.7 47 23-70 62-110 (338)
156 PRK13690 hypothetical protein; 32.9 75 0.0016 24.5 3.8 33 20-56 4-36 (184)
157 KOG0870|consensus 32.5 55 0.0012 24.9 3.0 37 59-100 15-51 (172)
158 PF01715 IPPT: IPP transferase 32.4 40 0.00087 27.3 2.5 36 22-67 41-76 (253)
159 cd05024 S-100A10 S-100A10: A s 32.1 74 0.0016 21.7 3.4 22 2-23 15-37 (91)
160 PRK07204 3-oxoacyl-(acyl carri 32.0 1.3E+02 0.0029 24.7 5.7 45 24-69 54-100 (329)
161 PF13499 EF-hand_7: EF-hand do 32.0 88 0.0019 18.8 3.6 34 5-38 12-50 (66)
162 PRK07204 3-oxoacyl-(acyl carri 31.8 84 0.0018 25.9 4.4 43 23-69 229-271 (329)
163 PLN02192 3-ketoacyl-CoA syntha 31.6 95 0.0021 28.0 4.9 52 16-69 170-223 (511)
164 COG2044 Predicted peroxiredoxi 31.1 27 0.00058 25.1 1.1 54 8-61 46-112 (120)
165 PRK06954 acetyl-CoA acetyltran 31.1 1.2E+02 0.0025 26.2 5.3 28 23-51 32-59 (397)
166 PRK07515 3-oxoacyl-(acyl carri 31.0 1.4E+02 0.0031 25.1 5.8 45 25-70 98-144 (372)
167 PF07736 CM_1: Chorismate muta 30.9 57 0.0012 23.4 2.8 30 21-51 17-46 (118)
168 PF08030 NAD_binding_6: Ferric 30.4 49 0.0011 23.8 2.5 23 46-68 2-24 (156)
169 PLN02854 3-ketoacyl-CoA syntha 30.4 75 0.0016 28.7 4.0 43 26-69 192-235 (521)
170 PF03630 Fumble: Fumble ; Int 30.3 57 0.0012 27.8 3.2 49 42-95 285-339 (341)
171 smart00555 GIT Helical motif i 30.2 61 0.0013 17.4 2.2 20 9-28 7-26 (31)
172 PF08735 DUF1786: Putative pyr 29.9 2.2E+02 0.0049 23.2 6.3 74 54-141 127-201 (254)
173 COG5418 Predicted secreted pro 29.4 1E+02 0.0022 23.1 3.9 42 7-52 62-104 (164)
174 TIGR03725 bact_YeaZ universal 29.3 85 0.0018 24.2 3.8 48 17-65 28-75 (202)
175 PRK05952 3-oxoacyl-(acyl carri 29.2 88 0.0019 26.9 4.2 46 25-71 255-302 (381)
176 PLN03169 chalcone synthase fam 29.1 1.1E+02 0.0025 26.2 4.9 47 22-69 106-153 (391)
177 PRK06065 acetyl-CoA acetyltran 28.8 1.3E+02 0.0029 25.9 5.3 47 22-70 29-79 (392)
178 PLN02360 probable 6-phosphoglu 28.6 1.3E+02 0.0027 24.5 4.8 44 14-64 18-61 (268)
179 PRK12880 3-oxoacyl-(acyl carri 28.5 63 0.0014 27.4 3.1 47 23-70 61-109 (353)
180 PRK12360 4-hydroxy-3-methylbut 28.4 97 0.0021 25.6 4.1 59 7-67 164-234 (281)
181 PLN03171 chalcone synthase-lik 27.4 1.3E+02 0.0028 26.0 4.9 49 21-70 107-156 (399)
182 PRK13371 4-hydroxy-3-methylbut 27.0 70 0.0015 27.8 3.2 60 7-67 232-313 (387)
183 COG0332 FabH 3-oxoacyl-[acyl-c 27.0 1.9E+02 0.0041 24.5 5.7 49 22-71 52-102 (323)
184 TIGR00747 fabH 3-oxoacyl-(acyl 26.8 2.2E+02 0.0048 23.1 6.1 47 23-70 52-100 (318)
185 PF09330 Lact-deh-memb: D-lact 26.7 96 0.0021 25.7 3.7 71 47-130 114-194 (291)
186 PF14574 DUF4445: Domain of un 26.7 63 0.0014 28.3 2.9 54 14-68 54-107 (412)
187 COG0363 NagB 6-phosphogluconol 26.6 1.2E+02 0.0026 24.4 4.3 23 45-67 33-55 (238)
188 PRK12879 3-oxoacyl-(acyl carri 26.3 2E+02 0.0043 23.5 5.7 46 23-69 54-101 (325)
189 KOG0677|consensus 26.2 32 0.0007 28.5 0.9 59 9-67 250-317 (389)
190 PF13405 EF-hand_6: EF-hand do 25.9 64 0.0014 16.6 1.8 16 5-20 12-27 (31)
191 PRK09185 3-oxoacyl-(acyl carri 25.9 1E+02 0.0023 26.3 4.1 45 26-71 262-308 (392)
192 PRK06840 hypothetical protein; 25.8 1.9E+02 0.004 24.0 5.5 41 24-68 237-277 (339)
193 cd08692 C2B_Tac2-N C2 domain s 25.7 2.4E+02 0.0051 20.6 5.4 50 131-182 55-107 (135)
194 PF10087 DUF2325: Uncharacteri 25.5 70 0.0015 21.5 2.4 24 47-71 1-25 (97)
195 PRK06366 acetyl-CoA acetyltran 25.4 2E+02 0.0044 24.6 5.8 27 23-50 27-53 (388)
196 PRK14691 3-oxoacyl-(acyl carri 25.3 1.1E+02 0.0024 25.9 4.1 47 23-70 205-253 (342)
197 PF00091 Tubulin: Tubulin/FtsZ 25.3 1.9E+02 0.0042 22.4 5.2 48 20-72 104-157 (216)
198 PRK09352 3-oxoacyl-(acyl carri 25.1 2.3E+02 0.005 23.0 5.9 47 23-70 53-101 (319)
199 COG2192 Predicted carbamoyl tr 25.1 1.8E+02 0.004 26.5 5.5 79 13-101 259-338 (555)
200 PRK07801 acetyl-CoA acetyltran 25.0 2.7E+02 0.0058 23.7 6.4 28 22-50 26-53 (382)
201 PRK09352 3-oxoacyl-(acyl carri 24.8 85 0.0018 25.6 3.3 43 22-68 217-259 (319)
202 COG2074 2-phosphoglycerate kin 24.6 82 0.0018 26.1 3.0 50 5-57 48-100 (299)
203 PF01941 AdoMet_Synthase: S-ad 24.6 1E+02 0.0022 26.8 3.7 40 17-56 32-72 (396)
204 cd02185 AroH Chorismate mutase 24.5 70 0.0015 22.9 2.3 40 6-50 6-45 (117)
205 PRK10737 FKBP-type peptidyl-pr 24.5 54 0.0012 25.6 1.9 36 46-86 31-66 (196)
206 PRK01045 ispH 4-hydroxy-3-meth 24.3 1.4E+02 0.003 25.0 4.3 59 7-67 163-235 (298)
207 CHL00203 fabH 3-oxoacyl-acyl-c 24.3 1.7E+02 0.0037 24.1 5.0 41 24-68 226-266 (326)
208 PRK06445 acetyl-CoA acetyltran 24.2 2.5E+02 0.0054 24.1 6.1 28 23-51 33-60 (394)
209 PF11378 DUF3181: Protein of u 24.1 1.1E+02 0.0024 20.7 3.1 51 2-61 20-70 (87)
210 PF06619 DUF1149: Protein of u 24.1 1.3E+02 0.0028 21.9 3.5 30 7-36 87-116 (127)
211 cd00830 KAS_III Ketoacyl-acyl 23.9 84 0.0018 25.6 3.1 44 22-69 221-264 (320)
212 cd00830 KAS_III Ketoacyl-acyl 23.9 2.3E+02 0.005 22.9 5.7 46 24-70 52-99 (320)
213 TIGR03286 methan_mark_15 putat 23.9 1.7E+02 0.0037 25.6 4.9 59 23-96 178-236 (404)
214 PF09286 Pro-kuma_activ: Pro-k 23.6 1.1E+02 0.0023 22.1 3.2 31 9-40 47-77 (143)
215 cd00833 PKS polyketide synthas 23.5 1.2E+02 0.0026 25.7 4.0 47 23-70 278-326 (421)
216 TIGR01796 CM_mono_aroH monofun 23.4 76 0.0016 22.7 2.3 40 6-50 6-45 (117)
217 PRK02122 glucosamine-6-phospha 23.3 1.4E+02 0.0031 27.8 4.6 47 14-66 35-81 (652)
218 PRK09258 3-oxoacyl-(acyl carri 23.3 1E+02 0.0023 25.4 3.5 38 18-56 233-270 (338)
219 cd00458 SugarP_isomerase Sugar 22.7 2E+02 0.0043 21.4 4.7 37 24-66 6-42 (169)
220 cd06155 eu_AANH_C_1 A group of 22.6 1.6E+02 0.0036 19.8 3.9 48 22-70 27-75 (101)
221 PRK07910 3-oxoacyl-(acyl carri 22.2 3.3E+02 0.0072 23.6 6.5 46 25-71 287-334 (418)
222 PLN02821 1-hydroxy-2-methyl-2- 22.2 1.1E+02 0.0024 27.2 3.5 60 7-67 306-387 (460)
223 cd05023 S-100A11 S-100A11: S-1 22.1 2E+02 0.0044 19.1 4.1 30 9-38 27-62 (89)
224 cd05015 SIS_PGI_1 Phosphogluco 22.1 3.3E+02 0.0071 20.0 5.8 41 22-68 3-46 (158)
225 PLN02932 3-ketoacyl-CoA syntha 22.0 1.8E+02 0.0039 26.0 4.9 48 22-70 148-196 (478)
226 KOG1159|consensus 22.0 1.7E+02 0.0037 26.4 4.6 54 10-70 493-548 (574)
227 COG4020 Uncharacterized protei 21.9 4.6E+02 0.01 21.7 7.2 52 42-101 266-320 (332)
228 PRK09065 glutamine amidotransf 21.4 1.1E+02 0.0025 24.2 3.3 50 42-102 52-108 (237)
229 COG0068 HypF Hydrogenase matur 21.3 2E+02 0.0044 27.1 5.1 54 42-97 691-746 (750)
230 PF04954 SIP: Siderophore-inte 21.2 91 0.002 21.9 2.4 22 46-67 2-23 (119)
231 PRK08250 glutamine amidotransf 21.2 1.4E+02 0.0031 23.7 3.7 50 42-102 43-104 (235)
232 cd00751 thiolase Thiolase are 21.1 2.8E+02 0.006 23.6 5.8 45 23-69 23-70 (386)
233 PRK14490 putative bifunctional 21.1 1.2E+02 0.0025 25.9 3.4 42 24-67 156-210 (369)
234 TIGR00216 ispH_lytB (E)-4-hydr 21.0 1.3E+02 0.0027 25.0 3.5 59 7-67 161-233 (280)
235 PF10116 Host_attach: Protein 21.0 2.8E+02 0.006 19.8 5.0 27 42-68 88-114 (138)
236 PF11341 DUF3143: Protein of u 20.8 62 0.0013 20.6 1.2 16 4-19 45-60 (63)
237 PRK06816 3-oxoacyl-(acyl carri 20.8 2.9E+02 0.0063 23.4 5.8 44 25-69 66-111 (378)
238 PRK05963 3-oxoacyl-(acyl carri 20.7 2.2E+02 0.0049 23.3 5.0 43 22-68 225-267 (326)
239 TIGR00747 fabH 3-oxoacyl-(acyl 20.7 1.3E+02 0.0028 24.6 3.6 43 22-68 217-259 (318)
240 cd08378 C2B_MCTP_PRT_plant C2 20.6 3E+02 0.0066 19.0 6.0 44 135-181 36-80 (121)
241 PRK09116 3-oxoacyl-(acyl carri 20.5 1.6E+02 0.0035 25.4 4.2 48 23-71 274-323 (405)
242 TIGR00004 endoribonuclease L-P 20.4 1.9E+02 0.0041 20.1 4.0 46 24-70 51-97 (124)
243 PRK04439 S-adenosylmethionine 20.3 1.3E+02 0.0028 26.2 3.5 40 17-56 32-72 (399)
244 cd01745 GATase1_2 Subgroup of 20.2 1.2E+02 0.0027 23.0 3.1 16 43-58 52-67 (189)
245 PF00168 C2: C2 domain; Inter 20.2 2.2E+02 0.0048 17.3 4.4 47 131-179 38-85 (85)
No 1
>KOG0100|consensus
Probab=100.00 E-value=3.5e-44 Score=298.39 Aligned_cols=170 Identities=45% Similarity=0.626 Sum_probs=164.1
Q ss_pred CCceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 5 NGRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
+++.++||+.||+|.-+|+.++..++.++|+++++ .+.|||.++|||||||||+||++|+++|.|+.+++. +||
T Consensus 324 DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~l-kKsdideiVLVGGsTrIPKvQqllk~fF~GKepskG-----inP 397 (663)
T KOG0100|consen 324 DFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDL-KKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKG-----INP 397 (663)
T ss_pred cccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCc-ccccCceEEEecCcccChhHHHHHHHHhCCCCccCC-----CCh
Confidence 34689999999999999999999999999999999 599999999999999999999999999999999999 999
Q ss_pred hhHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEec
Q psy5548 85 CEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG 164 (183)
Q Consensus 85 ~eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eG 164 (183)
|||||+|||.||..++|. +...++.+.|+.|.++||++.+|.|+.+|||||.+|+++++.|++..|||+.+.|++|||
T Consensus 398 dEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEG 475 (663)
T KOG0100|consen 398 DEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEG 475 (663)
T ss_pred HHHHHhhhhhhhcccccc--cCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeec
Confidence 999999999999999997 457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEeC
Q psy5548 165 ERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 165 e~~~~~~n~~lG~~~l~g 182 (183)
|+.+.++|++||+|+|.|
T Consensus 476 ER~mtkdn~lLGkFdltG 493 (663)
T KOG0100|consen 476 ERPMTKDNHLLGKFDLTG 493 (663)
T ss_pred cccccccccccccccccC
Confidence 999999999999999987
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=290.83 Aligned_cols=166 Identities=36% Similarity=0.499 Sum_probs=156.6
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
.+.+|||++||++|+++++++.++++++|+++++ .+.+|+.|+|||||||||.||++|+++|+ ..+..+ +|||
T Consensus 316 ~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~-~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~-----~nPd 388 (657)
T PTZ00186 316 IQMHISRSKFEGITQRLIERSIAPCKQCMKDAGV-ELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRG-----VNPD 388 (657)
T ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhCCEEEEECCcccChHHHHHHHHHhC-CCcccc-----CCCc
Confidence 3578999999999999999999999999999998 48999999999999999999999999996 445567 9999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
||||+|||+||+.+++. ++++.+.|++|++||+++.+|.+.+|||||++||++++..|++..|||+.+.|+|||||
T Consensus 389 eaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe 464 (657)
T PTZ00186 389 EAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGE 464 (657)
T ss_pred hHHHHhHHHHHHHhccc----cCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEec
Confidence 99999999999999875 57789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+..+.+|..||+|.|.|
T Consensus 465 ~~~~~~n~~lg~~~l~~ 481 (657)
T PTZ00186 465 REMAADNQMMGQFDLVG 481 (657)
T ss_pred ccccccccccceEEEcC
Confidence 99999999999999876
No 3
>KOG0101|consensus
Probab=100.00 E-value=4.4e-38 Score=275.69 Aligned_cols=170 Identities=55% Similarity=0.719 Sum_probs=164.1
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
-.+|||.+||.+|.+++.++.++++++|+++++ ++.+|+.|+||||||++|++|..++++|+++.+..+ +||||
T Consensus 298 ~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~-dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~s-----inpDe 371 (620)
T KOG0101|consen 298 YTSITRARFEELNADLFRSTLEPVEKALKDAKL-DKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKS-----INPDE 371 (620)
T ss_pred cceeehhhhhhhhhHHHHHHHHHHHHHHHhhcc-CccCCceeEEecCcccchHHHHHHHHHhcccccccC-----CCHHH
Confidence 468999999999999999999999999999998 599999999999999999999999999998888888 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
+||+|||+||+.+++..+..+.++.+.|++|.++|++..++.|.++|++||.+|++++.+|+++.|||+.+.|.|||||+
T Consensus 372 avA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger 451 (620)
T KOG0101|consen 372 AVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGER 451 (620)
T ss_pred HHHhhHHHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccc
Confidence 99999999999999987777789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
.++++|+++|.|+|.|
T Consensus 452 ~~~kdn~~lg~feL~g 467 (620)
T KOG0101|consen 452 AMTKDNNLLGKFELTG 467 (620)
T ss_pred cccccccccceeeecC
Confidence 9999999999999987
No 4
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=3.1e-37 Score=275.70 Aligned_cols=168 Identities=35% Similarity=0.471 Sum_probs=156.4
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
.+.+|||++||++|+++++++.++++++|+++++ .+.+|+.|+|||||||||.|+++|+++|+ ..+..+ +|||
T Consensus 275 ~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~-~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~-----~npd 347 (599)
T TIGR01991 275 FKGKLTRDEFEALIQPLVQKTLSICRRALRDAGL-SVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTD-----IDPD 347 (599)
T ss_pred EEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCC-----CCCc
Confidence 3578999999999999999999999999999998 48999999999999999999999999996 445566 8999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
+|||+|||++|+.+++. ...+++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++..|+|+.+.|+||||+
T Consensus 348 eaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe 425 (599)
T TIGR01991 348 QVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGE 425 (599)
T ss_pred HHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeec
Confidence 99999999999999875 2346789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+..+.+|.+||+|.|.|
T Consensus 426 ~~~~~~n~~lg~~~l~~ 442 (599)
T TIGR01991 426 RELVEDCRSLARFELRG 442 (599)
T ss_pred ccccccCceEEEEEEcC
Confidence 99999999999999875
No 5
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.8e-37 Score=273.76 Aligned_cols=163 Identities=31% Similarity=0.410 Sum_probs=153.0
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
+.+|||++||++|+|+++++.++++++|++++ ..+|+.|+|||||||||.|+++|+++|+ ..+..+ +|||+
T Consensus 274 ~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~---~~~Id~ViLvGGssriP~v~~~l~~~f~-~~~~~~-----~npde 344 (595)
T PRK01433 274 NISINKQTLEQLILPLVERTINIAQECLEQAG---NPNIDGVILVGGATRIPLIKDELYKAFK-VDILSD-----IDPDK 344 (595)
T ss_pred eEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC---cccCcEEEEECCcccChhHHHHHHHHhC-CCceec-----CCchH
Confidence 57899999999999999999999999999997 4689999999999999999999999996 455567 89999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. ..++.+.|++|++||+++.+|.+.+|||||+++|++++..|++..|+|+.+.|+|||||+
T Consensus 345 aVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~ 420 (595)
T PRK01433 345 AVVWGAALQAENLIAP----HTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGER 420 (595)
T ss_pred HHHHHHHHHHHHhhCC----ccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccc
Confidence 9999999999999875 357789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|..||+|.|.|
T Consensus 421 ~~~~~n~~lg~~~l~~ 436 (595)
T PRK01433 421 EMAADCRSLARFELKG 436 (595)
T ss_pred cccCCCcEEEEEEEcC
Confidence 9999999999999876
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.3e-37 Score=277.71 Aligned_cols=167 Identities=40% Similarity=0.513 Sum_probs=158.0
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
.+.+|||++||++|+|+++++.++++++|+++++. +++|+.|+|||||||||+||++|+++|++..+..+ +|||
T Consensus 290 ~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~-~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~-----~npd 363 (653)
T PRK13411 290 LEMELTRAKFEELTKDLVEATIEPMQQALKDAGLK-PEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRS-----VNPD 363 (653)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCC-----CCch
Confidence 35689999999999999999999999999999984 89999999999999999999999999976677777 9999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
+|||+|||++|+.+++. .+++.+.|++|++||+++.++.+.+|||+|+++|++++.+|++..|+|+.+.|+||||+
T Consensus 364 eaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge 439 (653)
T PRK13411 364 EAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGE 439 (653)
T ss_pred HHHHHHHHHHHHhhcCC----ccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEec
Confidence 99999999999999875 67889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+..+.+|..||+|.|.|
T Consensus 440 ~~~~~~n~~lg~~~l~~ 456 (653)
T PRK13411 440 RAMAKDNKSLGKFLLTG 456 (653)
T ss_pred CcccccCceeeEEEEcC
Confidence 99999999999999875
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.1e-37 Score=277.27 Aligned_cols=165 Identities=38% Similarity=0.567 Sum_probs=156.3
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
+.+|||++||++|+++++++.++++++|+++++. +++|+.|+|||||||||.|+++|+++|+ ..+..+ +||||
T Consensus 292 ~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~-~~dId~VvLVGGssRiP~V~~~l~~~fg-~~~~~~-----~npde 364 (668)
T PRK13410 292 ETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLS-PEDIDEVVLVGGSTRMPMVQQLVRTLIP-REPNQN-----VNPDE 364 (668)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhCcEEEEECCccccHHHHHHHHHHcC-CCcccC-----CCCch
Confidence 5689999999999999999999999999999984 8999999999999999999999999995 556677 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+++++. .+++.+.|++|++||+++.+|.+.+|||+|+++|++++.+|++..|||+.+.|+||||++
T Consensus 365 aVA~GAAi~aa~ls~~----~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~ 440 (668)
T PRK13410 365 VVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGER 440 (668)
T ss_pred HHHHhHHHHHHhhccc----ccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeecc
Confidence 9999999999999875 678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|..||+|.|.|
T Consensus 441 ~~~~~n~~lg~~~l~~ 456 (668)
T PRK13410 441 EMASDNKSLGRFKLSG 456 (668)
T ss_pred ccccCCceEEEEEEeC
Confidence 9999999999999976
No 8
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=276.28 Aligned_cols=171 Identities=52% Similarity=0.686 Sum_probs=159.9
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
.+.+|||++||++|+++++++.++++++|+++++ .+.+|+.|+|||||||||.||++|+++|++..+..+ +|||
T Consensus 295 ~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~-~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~-----~npd 368 (653)
T PTZ00009 295 YNVTISRARFEELCGDYFRNTLQPVEKVLKDAGM-DKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKS-----INPD 368 (653)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCC-----CCcc
Confidence 4678999999999999999999999999999998 489999999999999999999999999976667777 9999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
+|||+|||++|+.+++...+.++++.+.|++|++||++..+|.+.+||++|+++|++++.+|++..|+|+.+.|+||||+
T Consensus 369 eaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege 448 (653)
T PTZ00009 369 EAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGE 448 (653)
T ss_pred hHHhhhhhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecc
Confidence 99999999999999976445677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+..+.+|..||+|.|.|
T Consensus 449 ~~~~~~n~~lg~~~i~~ 465 (653)
T PTZ00009 449 RAMTKDNNLLGKFHLDG 465 (653)
T ss_pred cccCCCCceEEEEEEcC
Confidence 99999999999999875
No 9
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-36 Score=272.85 Aligned_cols=166 Identities=32% Similarity=0.456 Sum_probs=154.6
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhH
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEA 87 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ea 87 (183)
..|||++||++|+++++++.++++++|+++++. +.+|+.|+|||||||||.|+++|+++|+. .+..+ +|||+|
T Consensus 293 ~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~-~~~i~~ViLvGGssriP~v~~~l~~~fg~-~~~~~-----~npdea 365 (616)
T PRK05183 293 GEITREQFNALIAPLVKRTLLACRRALRDAGVE-ADEVKEVVMVGGSTRVPLVREAVGEFFGR-TPLTS-----IDPDKV 365 (616)
T ss_pred CeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cccCCEEEEECCcccChHHHHHHHHHhcc-CcCcC-----CCchHH
Confidence 459999999999999999999999999999984 88999999999999999999999999964 44567 999999
Q ss_pred HhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCC
Q psy5548 88 VAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERA 167 (183)
Q Consensus 88 VA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~ 167 (183)
||+|||++|+.+++. ...+++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++..|+|+.+.++|||||+.
T Consensus 366 VA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~ 443 (616)
T PRK05183 366 VAIGAAIQADILAGN--KPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERE 443 (616)
T ss_pred HHHHHHHHHHHhccc--cccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEeccccc
Confidence 999999999999875 234678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEeC
Q psy5548 168 MTKDNNLLGKFKMEK 182 (183)
Q Consensus 168 ~~~~n~~lG~~~l~g 182 (183)
.+.+|.+||+|.|.|
T Consensus 444 ~~~~n~~lg~~~i~~ 458 (616)
T PRK05183 444 LVADCRSLARFELRG 458 (616)
T ss_pred ccccccEEEEEEeCC
Confidence 999999999999975
No 10
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.5e-36 Score=274.04 Aligned_cols=165 Identities=36% Similarity=0.511 Sum_probs=155.8
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
+.+|||++||++|+++++++.++++++|+++++ .+++|+.|+|||||||||.||++|+++|+ ..+..+ +|||+
T Consensus 329 ~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~-~~~dId~ViLvGGssriP~V~~~i~~~fg-~~~~~~-----~npde 401 (673)
T PLN03184 329 DTTLTRAKFEELCSDLLDRCKTPVENALRDAKL-SFKDIDEVILVGGSTRIPAVQELVKKLTG-KDPNVT-----VNPDE 401 (673)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHccEEEEECCccccHHHHHHHHHHhC-CCcccc-----cCcch
Confidence 468999999999999999999999999999998 48999999999999999999999999995 556677 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. ++++.+.|++|++||+++.++.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++
T Consensus 402 aVA~GAAi~aa~ls~~----~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~ 477 (673)
T PLN03184 402 VVALGAAVQAGVLAGE----VSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGER 477 (673)
T ss_pred HHHHHHHHHHHHhccC----ccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecc
Confidence 9999999999999874 577899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|..||+|.|+|
T Consensus 478 ~~~~~n~~lg~~~i~~ 493 (673)
T PLN03184 478 EFVRDNKSLGSFRLDG 493 (673)
T ss_pred cccccCceEEEEEEeC
Confidence 9999999999999876
No 11
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.9e-36 Score=273.09 Aligned_cols=166 Identities=42% Similarity=0.557 Sum_probs=156.1
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
++.+|||++||++|+++++++.++++++|+++++. +++|+.|+|||||||||.||++|+++|+ ..+..+ +|||
T Consensus 330 ~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~-~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~-----~npd 402 (663)
T PTZ00400 330 LQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVK-KDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKG-----VNPD 402 (663)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHCcEEEEECCccCChHHHHHHHHHhC-CCcccC-----CCCc
Confidence 35789999999999999999999999999999984 8999999999999999999999999996 456667 9999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
++||+|||++|+.+++. .+++.+.|++|++||+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.|.||||+
T Consensus 403 eaVA~GAAi~aa~l~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege 478 (663)
T PTZ00400 403 EAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGE 478 (663)
T ss_pred cceeeccHHHHHhhcCC----ccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEec
Confidence 99999999999999875 57889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+..+.+|..||+|.|.|
T Consensus 479 ~~~~~~n~~lg~~~i~~ 495 (663)
T PTZ00400 479 REMAADNKLLGQFDLVG 495 (663)
T ss_pred CccCCcCceeEEEEEcC
Confidence 99999999999999875
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.6e-36 Score=269.22 Aligned_cols=165 Identities=40% Similarity=0.555 Sum_probs=155.8
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
+.+|||++||++|+++++++.++++++|+++++ .+.+|+.|+||||+||||.|+++|+++|+ ..+..+ +|||+
T Consensus 292 ~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~-~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~-----~~pde 364 (621)
T CHL00094 292 EKTLTRAKFEELCSDLINRCRIPVENALKDAKL-DKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQS-----VNPDE 364 (621)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcC-----CCchh
Confidence 568999999999999999999999999999998 48999999999999999999999999996 556677 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. .+++.+.|++|++||+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.+.||||++
T Consensus 365 ava~GAA~~aa~ls~~----~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~ 440 (621)
T CHL00094 365 VVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGER 440 (621)
T ss_pred HHHhhhHHHHHHhcCC----ccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeecc
Confidence 9999999999999874 577899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|..||+|.|.|
T Consensus 441 ~~~~~n~~lg~~~i~~ 456 (621)
T CHL00094 441 ELAKDNKSLGTFRLDG 456 (621)
T ss_pred ccCCCCCEEEEEEEeC
Confidence 9999999999999975
No 13
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.9e-36 Score=268.43 Aligned_cols=166 Identities=42% Similarity=0.571 Sum_probs=156.4
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
.+.+|||++||++|+++++++.++++++|+++++. ..+|+.|+|||||||||.|++.|+++|+ ..+..+ +|||
T Consensus 289 ~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~-~~~id~ViLvGGssriP~v~~~l~~~fg-~~~~~~-----~npd 361 (627)
T PRK00290 289 LEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLS-VSDIDEVILVGGSTRMPAVQELVKEFFG-KEPNKG-----VNPD 361 (627)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhCcEEEEECCcCCChHHHHHHHHHhC-CCCCcC-----cCCh
Confidence 35789999999999999999999999999999984 8999999999999999999999999995 556677 9999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
+|||+|||++|+.+++. ++++.+.|++|++||+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.|+||||+
T Consensus 362 eava~GAa~~aa~l~~~----~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge 437 (627)
T PRK00290 362 EVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGE 437 (627)
T ss_pred HHHHHhHHHHHHHhcCC----ccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEec
Confidence 99999999999999874 67889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+..+.+|..||+|.|.|
T Consensus 438 ~~~~~~~~~lg~~~i~~ 454 (627)
T PRK00290 438 REMAADNKSLGRFNLTG 454 (627)
T ss_pred ccccCcCceEEEEEECC
Confidence 99999999999999875
No 14
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=8.3e-36 Score=266.57 Aligned_cols=165 Identities=42% Similarity=0.587 Sum_probs=156.0
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
+.+|||++||++|+++++++.++++++|+++++. +.+|+.|+|||||||||.|+++++++|+ ..+..+ +|||+
T Consensus 288 ~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~-~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~-----~~pde 360 (595)
T TIGR02350 288 EMTLTRAKFEELTADLVERTKEPVRQALKDAGLS-ASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKS-----VNPDE 360 (595)
T ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HhHCcEEEEECCcccChHHHHHHHHHhC-CcccCC-----cCcHH
Confidence 5689999999999999999999999999999984 8999999999999999999999999996 556677 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. ++++.+.|++|+++|+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.+.||||++
T Consensus 361 ava~GAa~~aa~l~~~----~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~ 436 (595)
T TIGR02350 361 VVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGER 436 (595)
T ss_pred HHHHHHHHHHHHhcCC----cccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecc
Confidence 9999999999999875 578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|..||+|.|.|
T Consensus 437 ~~~~~~~~lg~~~i~~ 452 (595)
T TIGR02350 437 PMAADNKSLGRFELTG 452 (595)
T ss_pred cccccCcEeEEEEECC
Confidence 9999999999999875
No 15
>KOG0102|consensus
Probab=100.00 E-value=1.6e-36 Score=259.10 Aligned_cols=165 Identities=40% Similarity=0.524 Sum_probs=158.5
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
++++||.+||+++.++++|+++++.++|++|++. .+||++|+||||.+|||+|++.+.+.|+ +.+... +||||
T Consensus 317 ~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~-~~di~EV~lvggmtrmpkv~s~V~e~fg-k~p~~~-----vnPde 389 (640)
T KOG0102|consen 317 NIELTRGEFEELVPSLIARTIEPCKKALRDASLS-SSDINEVILVGGMTRMPKVQSTVKELFG-KGPSKG-----VNPDE 389 (640)
T ss_pred EEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCC-hhhhhhhhhhcchhhcHHHHHHHHHHhC-CCCCCC-----cCCcc
Confidence 4789999999999999999999999999999984 8999999999999999999999999995 567777 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
+||.|||+|+..+++. ++++.+.|++|++||+++.+|.|..|||+|+.||++++..|.+..|+|+.+.|++||||+
T Consensus 390 ava~GAaiqggvl~ge----VkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qger 465 (640)
T KOG0102|consen 390 AVAGGAAIQGGVLSGE----VKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGER 465 (640)
T ss_pred hhccchhhccchhhcc----ccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechh
Confidence 9999999999999987 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
.+..+|++||.|.+.|
T Consensus 466 e~~~dnk~lG~f~l~g 481 (640)
T KOG0102|consen 466 EMVNDNKLLGSFILQG 481 (640)
T ss_pred hhhccCcccceeeecc
Confidence 9999999999999876
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=2.2e-32 Score=244.10 Aligned_cols=167 Identities=31% Similarity=0.444 Sum_probs=153.4
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
+.+|||++||++++++++++.++++++|+++++. ..+|+.|+||||+||+|+|++.|++.|+ ..+..+ +||++
T Consensus 292 ~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~-~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~-----~~p~~ 364 (602)
T PF00012_consen 292 SITITREEFEELCEPLLERIIEPIEKALKDAGLK-KEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKS-----VNPDE 364 (602)
T ss_dssp EEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT---GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-S-----S-TTT
T ss_pred ccccccceeccccccccccccccccccccccccc-ccccceeEEecCcccchhhhhhhhhccc-cccccc-----ccccc
Confidence 5799999999999999999999999999999974 8999999999999999999999999997 666677 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. +..+++.+.|++|+++|++..+|.+.+++++|+++|+..+..|.+..++|+.+.+.||||++
T Consensus 365 aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~ 442 (602)
T PF00012_consen 365 AVARGAALYAAILSGS--FRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGES 442 (602)
T ss_dssp HHHHHHHHHHHHHHTS--CSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSS
T ss_pred ccccccccchhhhccc--cccccccccccccccccccccccccccccccccccccccccccchhccccccccceeeeccc
Confidence 9999999999999874 34677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
....+|..||++.|.+
T Consensus 443 ~~~~~~~~ig~~~i~~ 458 (602)
T PF00012_consen 443 SSFEDNKKIGSYTISG 458 (602)
T ss_dssp SBGGGSEEEEEEEEES
T ss_pred cccccccccccccccc
Confidence 9999999999999975
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-31 Score=234.67 Aligned_cols=165 Identities=39% Similarity=0.543 Sum_probs=157.1
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++||+++.+++.++..+++++|.++++ ++.+|+.|+||||+||||.|++.++++|+ +.+..+ +||||
T Consensus 273 ~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l-~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~-----inpde 345 (579)
T COG0443 273 LKELTRAKFEELILDLLERTIEPVEQALKDAGL-EKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKS-----INPDE 345 (579)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhCceEEEccceeccHHHHHHHHHHhC-cccccc-----CCccH
Confidence 568999999999999999999999999999998 59999999999999999999999999996 667788 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
+||.|||+||..+++. .+++.+.|++|+++|++..++.+..+|++|+.+|.++...|.+..|+|..+.++++||++
T Consensus 346 ava~GAa~qa~~l~~~----~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~ 421 (579)
T COG0443 346 AVALGAAIQAAVLSGE----VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGER 421 (579)
T ss_pred HHHHHHHHHHHhhcCc----ccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecch
Confidence 9999999999999986 348889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
.+..+|..+|.|.+.|
T Consensus 422 ~~~~~~~~lg~f~l~~ 437 (579)
T COG0443 422 EMAADNKSLGRFELDG 437 (579)
T ss_pred hhcccCceeEEEECCC
Confidence 9999999999999875
No 18
>KOG0103|consensus
Probab=99.93 E-value=5.1e-25 Score=193.11 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=145.5
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
-+..|+|++||++|.++++|+..++.++|+++++ ..+||+.|.+|||+||+|.|+++|.++| ++.+..+ +|.|
T Consensus 296 vs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l-~~edi~~VEiVGg~sripaike~Is~~F-gke~s~T-----lN~d 368 (727)
T KOG0103|consen 296 VSSKIKREEFEELSAPLLERVEVPLLKALADAKL-KVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRT-----LNQD 368 (727)
T ss_pred hhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcC-ccccceeEEEecCcccchHHHHHHHHHh-CCccccc-----ccHH
Confidence 3568999999999999999999999999999998 4999999999999999999999999999 5778788 9999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEe----C-CEEEEEEeCCCCcCcceEEEEEcccCCCccEEEE
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETA----G-GVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQ 160 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~----~-g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~ 160 (183)
||||+|||+++++++.. ++++++.+.|+.|++|.++|. + +....+||+|.++|.++..+|... ..+.+.
T Consensus 369 EavarG~ALqcAIlSP~--frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk----~~F~le 442 (727)
T KOG0103|consen 369 EAVARGAALQCAILSPT--FRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRK----GPFTLE 442 (727)
T ss_pred HHHHHhHHHHHHhcCcc--ccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEec----CceEEE
Confidence 99999999999999965 678999999999999999875 3 455889999999999999888864 458888
Q ss_pred EEecC-CCCCCCCceeeEEEEeC
Q psy5548 161 VYEGE-RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 161 i~eGe-~~~~~~n~~lG~~~l~g 182 (183)
+++.. ..++..-..||+|.+.+
T Consensus 443 a~yt~~~~lp~~~~kI~~~~i~~ 465 (727)
T KOG0103|consen 443 AKYTKVNKLPYPKPKIEKWTITG 465 (727)
T ss_pred EEeccccccCCCCCceeeEEecc
Confidence 88887 55565557899998865
No 19
>KOG0104|consensus
Probab=99.91 E-value=2e-24 Score=190.44 Aligned_cols=141 Identities=21% Similarity=0.176 Sum_probs=126.7
Q ss_pred cCCceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCC
Q psy5548 4 YNGRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHD 83 (183)
Q Consensus 4 ~~~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~ 83 (183)
-++|.+|||++||++|+|+..|+..+++++|..+.+ +.++|+.|+|+||+||+|+||+.|.++.+..++.++ +|
T Consensus 325 iDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l-~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~kn-----lN 398 (902)
T KOG0104|consen 325 IDFRLKVTREEFEELCADLEERIVEPINDALKKAQL-SLDEINQVILFGGATRVPKVQETLIKAVGKEELGKN-----LN 398 (902)
T ss_pred cccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCC-ChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcc-----cC
Confidence 367899999999999999999999999999999998 499999999999999999999999999987889999 99
Q ss_pred chhHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCC--------EEEEEEeCCCCcCcceEEEEEcccC
Q psy5548 84 TCEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG--------VMTALIKRNTTIPTKQTQTFTTYSD 152 (183)
Q Consensus 84 p~eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g--------~~~~ii~~~t~lP~~~~~~~~~~~d 152 (183)
.|||+++||++||+.|+.. +.++++.+.|...+++-++.... ....+|+++.++|.++..+|+.+.|
T Consensus 399 aDEA~vmGav~~aA~LSks--FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysd 473 (902)
T KOG0104|consen 399 ADEAAVMGAVYQAAHLSKS--FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSD 473 (902)
T ss_pred hhHHHHHHHHHHHHhhccc--ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCC
Confidence 9999999999999999976 78899999999999888876532 2345899999999998777776654
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.58 E-value=6.1e-15 Score=128.20 Aligned_cols=83 Identities=22% Similarity=0.129 Sum_probs=75.0
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++||++|+++++++.++++++|+++++. ++.|+||||+|+||.|++.+++.||+.++ .. .+|.+
T Consensus 366 ~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~----~d~VvLvGGsSriP~V~~~l~~~fg~~~v-~~-----g~~~~ 435 (450)
T PRK11678 366 ATEISQQGLEEAISQPLARILELVQLALDQAQVK----PDVIYLTGGSARSPLIRAALAQQLPGIPI-VG-----GDDFG 435 (450)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCEEEEcCcccchHHHHHHHHHHCCCCcE-Ee-----CCCcc
Confidence 5789999999999999999999999999999863 57999999999999999999999976554 45 79999
Q ss_pred HHhhhHHHHHHHH
Q psy5548 87 AVAYGAAVQAAIL 99 (183)
Q Consensus 87 aVA~GAa~~a~~l 99 (183)
+||.|+|++|..+
T Consensus 436 sVa~Gla~~a~~~ 448 (450)
T PRK11678 436 SVTAGLARWAQVV 448 (450)
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999754
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.47 E-value=1.6e-13 Score=115.13 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCC-CCCCCCC-cEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPA-GREGRFE-DKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~-~~~~~i~-~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
..+|+|++|++++.++++++.+.++++|+.++. ...+.++ .|+|+||+|+||.|++.|++.|+ .++... .||
T Consensus 236 ~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~-~~v~~~-----~~P 309 (336)
T PRK13928 236 TITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK-VPVYIA-----EDP 309 (336)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC-CCceec-----CCH
Confidence 357999999999999999999999999999862 1256777 79999999999999999999995 455556 799
Q ss_pred hhHHhhhHHHHHHHHh
Q psy5548 85 CEAVAYGAAVQAAILH 100 (183)
Q Consensus 85 ~eaVA~GAa~~a~~l~ 100 (183)
+++||+|||+++..+.
T Consensus 310 ~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 310 ISCVALGTGKMLENID 325 (336)
T ss_pred HHHHHHHHHHHHhchH
Confidence 9999999999987653
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.34 E-value=3.3e-12 Score=107.00 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=72.9
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC-CCCCCC-cEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAG-REGRFE-DKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~-~~~~i~-~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
..+|+|++|++++.++++++.+.+.++|+++... ..+.++ .|+|+||+|++|.++++|++.|+ .++... .||
T Consensus 237 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~-~~v~~~-----~~P 310 (334)
T PRK13927 237 TITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG-LPVHVA-----EDP 310 (334)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC-CCcEec-----CCH
Confidence 4589999999999999999999999999988531 123344 59999999999999999999995 455555 799
Q ss_pred hhHHhhhHHHHHHH
Q psy5548 85 CEAVAYGAAVQAAI 98 (183)
Q Consensus 85 ~eaVA~GAa~~a~~ 98 (183)
+++||+|||+++..
T Consensus 311 ~~ava~Ga~~~~~~ 324 (334)
T PRK13927 311 LTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999865
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.24 E-value=2.6e-11 Score=101.70 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=72.2
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCC-C-cEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRF-E-DKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i-~-~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
..|+|++|++++.+.++++.+.+.+.|+++......++ + .|+|+||+|++|.+++.|++.|+ .++... .||+
T Consensus 241 ~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~-~~v~~~-----~~P~ 314 (333)
T TIGR00904 241 IEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETG-LPVIVA-----DDPL 314 (333)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHC-CCceec-----CChH
Confidence 57899999999999999999999999998763212344 3 69999999999999999999995 555556 7999
Q ss_pred hHHhhhHHHHHHH
Q psy5548 86 EAVAYGAAVQAAI 98 (183)
Q Consensus 86 eaVA~GAa~~a~~ 98 (183)
++||.||++++..
T Consensus 315 ~~va~Ga~~~~~~ 327 (333)
T TIGR00904 315 LCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998754
No 24
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.21 E-value=3.1e-11 Score=101.01 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=72.8
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC-CCCCCCc-EEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAG-REGRFED-KQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~-~~~~i~~-ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
..+|+|++|++++.+.++++.+.+.++|+++... ..+.++. |+|+||+|++|.++++|++.|+ .++... .+|
T Consensus 241 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~-~~v~~~-----~~p 314 (335)
T PRK13930 241 TIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG-LPVHIA-----EDP 314 (335)
T ss_pred eEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC-CCceec-----CCH
Confidence 4578999999999999999999999999987521 1234564 9999999999999999999996 445455 689
Q ss_pred hhHHhhhHHHHHHHH
Q psy5548 85 CEAVAYGAAVQAAIL 99 (183)
Q Consensus 85 ~eaVA~GAa~~a~~l 99 (183)
+++||+|||+.+...
T Consensus 315 ~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 315 LTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999998653
No 25
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.21 E-value=3.8e-11 Score=100.92 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=72.5
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC-CCCCCC-cEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAG-REGRFE-DKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~-~~~~i~-~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
..+++|++|+++|.+++.++.+.+.+.|+++... ..+.++ .|+|+||+|++|.+++++++.|+ .++... .||
T Consensus 239 ~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~-~~v~~~-----~~P 312 (335)
T PRK13929 239 TITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV-VPVHVA-----ANP 312 (335)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC-CCceeC-----CCH
Confidence 3589999999999999999999999999998531 246777 69999999999999999999995 555555 799
Q ss_pred hhHHhhhHHHHH
Q psy5548 85 CEAVAYGAAVQA 96 (183)
Q Consensus 85 ~eaVA~GAa~~a 96 (183)
+++||+||+..-
T Consensus 313 ~~~Va~Ga~~~~ 324 (335)
T PRK13929 313 LESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHH
Confidence 999999999764
No 26
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.03 E-value=7.5e-10 Score=90.41 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=65.2
Q ss_pred cHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhh
Q psy5548 11 ERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAY 90 (183)
Q Consensus 11 tR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~ 90 (183)
++++++++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.|+ .++... .||+.++|.
T Consensus 194 ~~~~~~~ii~~~~~~i~~~i~~~l~~~------~~~~IvLtGG~s~lpgl~e~l~~~lg-~~v~~~-----~~P~~~~a~ 261 (267)
T PRK15080 194 HHKEIFPVVKPVVEKMASIVARHIEGQ------DVEDIYLVGGTCCLPGFEEVFEKQTG-LPVHKP-----QHPLFVTPL 261 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCEEEEECCcccchhHHHHHHHHhC-CCcccC-----CCchHHHHH
Confidence 567889999999999999999999853 57799999999999999999999995 555556 899999999
Q ss_pred hHHHHH
Q psy5548 91 GAAVQA 96 (183)
Q Consensus 91 GAa~~a 96 (183)
|||+||
T Consensus 262 Gaa~~~ 267 (267)
T PRK15080 262 GIALSC 267 (267)
T ss_pred HHHhhC
Confidence 999875
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.93 E-value=1.5e-09 Score=87.25 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=62.5
Q ss_pred cHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhh
Q psy5548 11 ERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAY 90 (183)
Q Consensus 11 tR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~ 90 (183)
+.+++.++++++++++.+.+++.|++. .++.|+|+||++++|.+++.+++.|+ .++... .||++++|.
T Consensus 167 ~~~~~~~~i~~~~~~i~~~i~~~l~~~------~~~~v~LtGG~a~ipgl~e~l~~~lg-~~v~~~-----~~P~~~va~ 234 (239)
T TIGR02529 167 DEEEIFPVVKPVYQKMASIVKRHIEGQ------GVKDLYLVGGACSFSGFADVFEKQLG-LNVIKP-----QHPLYVTPL 234 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCEEEEECchhcchhHHHHHHHHhC-CCcccC-----CCCCeehhh
Confidence 356788899999999999999999864 35689999999999999999999995 555556 899999999
Q ss_pred hHHH
Q psy5548 91 GAAV 94 (183)
Q Consensus 91 GAa~ 94 (183)
|||+
T Consensus 235 Gaa~ 238 (239)
T TIGR02529 235 GIAM 238 (239)
T ss_pred eeec
Confidence 9986
No 28
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.88 E-value=4.8e-09 Score=89.24 Aligned_cols=87 Identities=18% Similarity=0.074 Sum_probs=68.9
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHH-HHHhhCCCCCCCCCCc-EEeecCccchHHHHHHHHhhcCCcccccC--CCcc-
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVI-KWLDSNPAGREGRFED-KQKAVGSHLYPIITKLYQAWLVHQANSLV--GTKT- 80 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~-~~l~~~~~~~~~~i~~-ViLvGGss~iP~V~~~l~~~f~~~~~~~~--~~~~- 80 (183)
...+|||++|++++++.++++.+.++ +.|++++. .++++. |+|+||+|+||.+++.+++.|+.. +... ...+
T Consensus 276 ~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~--~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~-vr~~~P~~~~~ 352 (371)
T TIGR01174 276 PPRSLSRKELAEIIEARAEEILEIVKQKELRKSGF--KEELNGGIVLTGGGAQLEGIVELAEKVFDNP-VRIGLPQNIGG 352 (371)
T ss_pred CCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccCCCEEEEeChHHcccCHHHHHHHHhCCC-eEEECCCccCC
Confidence 45689999999999999999999998 99999875 377888 999999999999999999999643 2111 0000
Q ss_pred ----cCCchhHHhhhHHHH
Q psy5548 81 ----RHDTCEAVAYGAAVQ 95 (183)
Q Consensus 81 ----~~~p~eaVA~GAa~~ 95 (183)
.-+|.-++|.|.++|
T Consensus 353 ~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 353 LTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred chhhcCCcHHHHHHHHHhC
Confidence 126777888887754
No 29
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.68 E-value=7.2e-08 Score=83.50 Aligned_cols=89 Identities=16% Similarity=0.018 Sum_probs=66.4
Q ss_pred eeecHHHHHHhhhhHHHhHHHHH-------HHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccC--CC
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIV-------IKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLV--GT 78 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~-------~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~--~~ 78 (183)
.++||.+|++++++-++++.+.+ ...|.+++. ....++.|+|+||+++||.+++.+++.|+-. +... ..
T Consensus 286 ~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~-~~~~~~givLtGG~a~lpgi~e~~~~~f~~~-vri~~P~~ 363 (420)
T PRK09472 286 RSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGV-KHHLAAGIVLTGGAAQIEGLAACAQRVFHTQ-VRIGAPLN 363 (420)
T ss_pred eEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccCCCEEEEeCchhccccHHHHHHHHhCCC-eEEeCCcc
Confidence 47999999999999555554444 455667776 3678999999999999999999999999633 2111 00
Q ss_pred cc-----cCCchhHHhhhHHHHHHH
Q psy5548 79 KT-----RHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 79 ~~-----~~~p~eaVA~GAa~~a~~ 98 (183)
.. ..+|..++|.|.++|+..
T Consensus 364 ~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 364 ITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred cCCChhhcCCcHHHHHHHHHHHhhh
Confidence 00 148999999999999763
No 30
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.06 E-value=2.5e-06 Score=71.57 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=67.8
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCC--CcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRF--EDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i--~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
+..|+-++..+.|.+.+.++.+.++++|++..-.-..|| +.|+|+||+++++.+.+.|++.++ -++... -||
T Consensus 234 ~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~-~pV~va-----~~P 307 (326)
T PF06723_consen 234 SIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETG-VPVRVA-----DDP 307 (326)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS-S-EEE------SST
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC-CCEEEc-----CCH
Confidence 358999999999999999999999999998641001243 359999999999999999999994 666666 799
Q ss_pred hhHHhhhHHHHH
Q psy5548 85 CEAVAYGAAVQA 96 (183)
Q Consensus 85 ~eaVA~GAa~~a 96 (183)
.++||.||....
T Consensus 308 ~~~va~G~~~~l 319 (326)
T PF06723_consen 308 LTAVARGAGKLL 319 (326)
T ss_dssp TTHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 31
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.73 E-value=0.00018 Score=60.92 Aligned_cols=77 Identities=8% Similarity=0.028 Sum_probs=62.7
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhh
Q psy5548 12 RQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 12 R~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~G 91 (183)
++++.++++++++++.+.+...+.+ ..+++.|+|+||++++ +++.|++.|+.. ... -||..|-|+|
T Consensus 264 ~~~~~~~~~~~~~~i~~~i~~~~~~-----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~-----~~p~~ANa~G 329 (344)
T PRK13917 264 KDEFYKEQDSVIDEVMSGFEIAVGN-----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKA-----DESQFANVRG 329 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEc-----CChHHHHHHH
Confidence 3456778888888888888877753 3579999999999997 889999999743 344 6999999999
Q ss_pred HHHHHHHHhCC
Q psy5548 92 AAVQAAILHGD 102 (183)
Q Consensus 92 Aa~~a~~l~~~ 102 (183)
...++..+.+.
T Consensus 330 ~~~~g~~~~~~ 340 (344)
T PRK13917 330 YYKYGELLKNK 340 (344)
T ss_pred HHHHHHHHhcc
Confidence 99999877654
No 32
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.21 E-value=0.0017 Score=50.04 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
.++.|+++||.++.|.+.+++.+.|+ .++.. .+..|+.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~-~~V~~------~~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG-RPVVR------PEVEEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT-SEEEE------ESSSTHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC-CceEe------CCCCchHHHHHHHHHHh
Confidence 48999999999999999999999995 55543 45589999999999864
No 33
>PRK15027 xylulokinase; Provisional
Probab=97.04 E-value=0.0032 Score=55.51 Aligned_cols=53 Identities=15% Similarity=-0.041 Sum_probs=43.3
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|+++||.++.+...+++.+.|+ .++... .+.+++.|+|||+.|+.-.|.
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~g-~pv~~~-----~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADISG-QQLDYR-----TGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHhC-CeEEee-----cCCCcchHHHHHHHHHHhcCC
Confidence 47899999999999999999999995 555333 456778899999999876553
No 34
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.03 E-value=0.0026 Score=51.27 Aligned_cols=66 Identities=18% Similarity=-0.019 Sum_probs=47.8
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCC-cEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFE-DKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~-~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
++++.+.+.+..-+.+.+... +++ .|++.||.++.|.+.+.+++.++ ..+... -+|..+.|+|||+
T Consensus 181 di~~~~~~~va~~i~~~~~~~------~~~~~Vvl~GGva~n~~l~~~l~~~lg-~~v~~~-----~~~~~~~AlGaAl 247 (248)
T TIGR00241 181 DILAGVYESIAERVAEMLQRL------KIEAPIVFTGGVSKNKGLVKALEKKLG-MKVITP-----PEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhc------CCCCCEEEECccccCHHHHHHHHHHhC-CcEEcC-----CCccHHHHHHHHh
Confidence 345555555555555544332 345 79999999999999999999994 555555 6777899999996
No 35
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=96.94 E-value=0.0039 Score=54.06 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=73.0
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccC---CCcc----
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLV---GTKT---- 80 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~---~~~~---- 80 (183)
.++||.++.++++.-++++..++++.|++.++. ..-...|+|+||++.||.+.+..++.|+.. +... +...
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~-~~~~~gvVlTGG~a~l~Gi~elA~~if~~~-vRig~P~~~~Gl~d~ 362 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLP-NHLPGGVVLTGGGAQLPGIVELAERIFGRP-VRLGVPLNIVGLTDI 362 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCcc-ccCCCeEEEECchhcCccHHHHHHHhcCCc-eEeCCCccccCchhh
Confidence 479999999999999999999999999999873 677789999999999999999999999632 2111 0001
Q ss_pred cCCchhHHhhhHHHHHHHH
Q psy5548 81 RHDTCEAVAYGAAVQAAIL 99 (183)
Q Consensus 81 ~~~p~eaVA~GAa~~a~~l 99 (183)
.-+|.-+.|.|..+|++..
T Consensus 363 ~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 363 ARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred ccCchhhhhHHHHHHHhhc
Confidence 2467889999999888754
No 36
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.91 E-value=0.0049 Score=51.04 Aligned_cols=46 Identities=22% Similarity=-0.008 Sum_probs=39.1
Q ss_pred cEEeecCccchHHHHHHHHhhcCCcccc-cCCCcccCCchhHHhhhHHHHHHH
Q psy5548 47 DKQKAVGSHLYPIITKLYQAWLVHQANS-LVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 47 ~ViLvGGss~iP~V~~~l~~~f~~~~~~-~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
.|+|.||.++.|.+++.|++.++ ..+. .. .+|..+-|+|||++|.-
T Consensus 242 ~v~~~GGva~N~~l~~al~~~Lg-~~v~~~p-----~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERILG-IKAVDTK-----IDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHhC-CCceeCC-----CCccHHHHHHHHHHHHH
Confidence 68999999999999999999995 4443 34 67899999999999864
No 37
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.0037 Score=52.12 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=71.4
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC-CCCCCCc-EEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAG-REGRFED-KQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~-~~~~i~~-ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
..+++-++..+.+++.++++++.++..|+...-. ..+-++. ++|+||.+.+.-+.+.+++.-+ -.+... -||
T Consensus 244 ~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~-~pv~ia-----~~p 317 (342)
T COG1077 244 TITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETG-VPVIIA-----DDP 317 (342)
T ss_pred eEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccC-CeEEEC-----CCh
Confidence 3578899999999999999999999999986421 1344455 9999999999999999999874 344445 799
Q ss_pred hhHHhhhHHHHHHHHh
Q psy5548 85 CEAVAYGAAVQAAILH 100 (183)
Q Consensus 85 ~eaVA~GAa~~a~~l~ 100 (183)
-++||+|+......+.
T Consensus 318 L~~Va~G~G~~le~~~ 333 (342)
T COG1077 318 LTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHhccchhhhhhH
Confidence 9999999988776654
No 38
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.72 E-value=0.0063 Score=54.51 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=59.4
Q ss_pred eecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHH
Q psy5548 9 KAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAV 88 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaV 88 (183)
.=+|.++.++.+-+++-+.=-++.+++...-. ...++.|.++||.++-|...+++.+.++ .++.. .+..|+.
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~-g~~~~~i~~~GGga~s~~w~Qi~ADvlg-~pV~~------~~~~e~~ 480 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTA-GHTIKSIFMSGGQCQNPLLMQLIADACD-MPVLI------PYVNEAV 480 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccEEEEecCcccCHHHHHHHHHHHC-CeeEe------cChhHHH
Confidence 33566666677776666544444444332110 1247899999999999999999999994 55644 4556788
Q ss_pred hhhHHHHHHHHhC
Q psy5548 89 AYGAAVQAAILHG 101 (183)
Q Consensus 89 A~GAa~~a~~l~~ 101 (183)
|+|||+.|+.-.+
T Consensus 481 alGaA~lA~~~~G 493 (541)
T TIGR01315 481 LHGAAMLGAKAAG 493 (541)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987555
No 39
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.68 E-value=0.0079 Score=49.06 Aligned_cols=45 Identities=18% Similarity=-0.003 Sum_probs=36.5
Q ss_pred cEEeecCccchHHHHHHHHhhcCCcc----cccCCCcccCCchhHHhhhHHHHH
Q psy5548 47 DKQKAVGSHLYPIITKLYQAWLVHQA----NSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 47 ~ViLvGGss~iP~V~~~l~~~f~~~~----~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
.|+|.||.++.|.+.+.|++.+++.. +... .+|..+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~-----~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENH-----PDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCC-----CcchHHHHHHHHHcC
Confidence 59999999999999999999885432 3233 578899999999864
No 40
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.62 E-value=0.013 Score=51.44 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++.+...+++.+.|+ .++.. .+..|+.|+|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g-~pv~~------~~~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFG-TPVDV------PEGEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhC-Cceee------cCCCcchHHHHHHHHHHhcCC
Confidence 48899999999999999999999995 55543 466788999999999876653
No 41
>PLN02669 xylulokinase
Probab=96.58 E-value=0.0083 Score=53.99 Aligned_cols=49 Identities=18% Similarity=0.040 Sum_probs=41.0
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
..++.|+++||.|+-|.+.+++.+.|+ ..+.. .+..++.|+|||+.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVlg-~pV~~------~~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIFG-CDVYT------VQRPDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHcC-CCeEe------cCCCCchHHHHHHHHHH
Confidence 357899999999999999999999995 45543 45557889999999976
No 42
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.38 E-value=0.014 Score=50.34 Aligned_cols=45 Identities=20% Similarity=0.012 Sum_probs=39.3
Q ss_pred cEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 47 DKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 47 ~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.|+++||.++.|.+.+.+++.++ .++... .+|.-+-|+|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg-~~iivP-----e~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLG-IEVVVP-----EYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhC-CcEEEC-----CcccHHHHHHHHHHhc
Confidence 59999999999999999999995 555555 6899999999999884
No 43
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.36 E-value=0.018 Score=50.55 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=42.2
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-|...+++.+.|+ .++.. .+..|+.++|||+.|+.-.|
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g-~pV~~------~~~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLD-IPVKV------VDDAETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcC-CeeEe------ccCCcchHHHHHHHHHHhcC
Confidence 47899999999999999999999995 65644 34457889999999987555
No 44
>PRK13317 pantothenate kinase; Provisional
Probab=96.31 E-value=0.011 Score=48.72 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=40.0
Q ss_pred CCCCcEEeec-CccchHHHHHHHHhhcC--CcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAV-GSHLYPIITKLYQAWLV--HQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvG-Gss~iP~V~~~l~~~f~--~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
..++.|+++| |-++.|.+++.+.++.. +.++... .+|.-+.|+|||++|.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p-----~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFL-----ENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEec-----CCCchhHHHHHHHHhh
Confidence 3467899999 79999999999998773 2344444 6889999999999875
No 45
>PRK04123 ribulokinase; Provisional
Probab=96.29 E-value=0.01 Score=53.17 Aligned_cols=51 Identities=25% Similarity=0.331 Sum_probs=42.6
Q ss_pred CCCcEEeecCc-cchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGS-HLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGs-s~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||. ++-+...+++.+.|+ .++.. ..+.|+.|+|||+.|+.-.+
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLN-RPIQV------VASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcC-CceEe------cCccccchHHHHHHHHHHhc
Confidence 47899999999 999999999999995 55533 46678899999999987554
No 46
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.24 E-value=0.011 Score=52.33 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=42.6
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++.|...+++.+.|+ .++.. .+..|+.|+|||+.|+.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g-~pv~~------~~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILG-VPVVR------PKVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcC-CeeEe------cCCCcchHHHHHHHHHhhcC
Confidence 47899999999999999999999995 55543 35567889999999977655
No 47
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.24 E-value=0.018 Score=49.61 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=38.4
Q ss_pred CcEEeecCccchHHHHHHHHhhcC----CcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 46 EDKQKAVGSHLYPIITKLYQAWLV----HQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 46 ~~ViLvGGss~iP~V~~~l~~~f~----~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
+.|++.||.++.|.+.+.|++.++ +.++... .+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp-----~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINID-----PDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecC-----CCccHHHHHHHHHhC
Confidence 579999999999999999999884 2344445 688999999999875
No 48
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.23 E-value=0.027 Score=50.37 Aligned_cols=51 Identities=29% Similarity=0.360 Sum_probs=42.2
Q ss_pred CCCcEEeecCc-cchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGS-HLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGs-s~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||. ++-+...+++.+.|+ .++... ...|+.|+|||+.|+.-.|
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g-~pV~~~------~~~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTN-RPLQIV------ASDQAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhC-CeeEec------cCCcchhHHHHHHHHHHcC
Confidence 48899999999 999999999999995 555443 4457889999999987655
No 49
>PRK10331 L-fuculokinase; Provisional
Probab=96.18 E-value=0.029 Score=49.35 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=42.4
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-|...+++.+.|+ .++.. .+..|+.++|||+.|+.-.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg-~pV~~------~~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLD-IPIKV------LDDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcC-CeeEe------cCcccchHHHHHHHHHHhcC
Confidence 57899999999999999999999995 55543 35567889999999987554
No 50
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.15 E-value=0.013 Score=51.77 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=42.7
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++.|...+++.+.|+ .++.. .+..|+.|+|||+.|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg-~pV~~------~~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILG-VPVER------PVVAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhC-CeeEe------cCcccchHHHHHHHHhhhcC
Confidence 47899999999999999999999995 55543 45668899999999987555
No 51
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.14 E-value=0.016 Score=51.33 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=42.6
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-+...+++.+.|+ .++.. ....|+.|+|||+.|+.-.|
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g-~pV~~------~~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILG-KDIVV------PEMAETTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhC-CceEe------cCcccchHHHHHHHHHhhcC
Confidence 37899999999999999999999994 55543 45667899999999987655
No 52
>KOG2517|consensus
Probab=96.08 E-value=0.025 Score=50.21 Aligned_cols=81 Identities=21% Similarity=0.135 Sum_probs=59.6
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
...|+|+- ++-+--++.++++..-++.+ ..|+.+.+.||-|+-|.+-+...+.++ .++.+. .++|.
T Consensus 385 ~~hia~A~----leai~fqtr~Il~am~~~~~----~~i~~L~~~GG~s~N~ll~Q~~ADi~g-~pv~~p-----~~~e~ 450 (516)
T KOG2517|consen 385 KEHLARAA----LEAIAFQTREILEAMERDGG----HPISTLRVCGGLSKNPLLMQLQADILG-LPVVRP-----QDVEA 450 (516)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhcC----CCcceeeeccccccCHHHHHHHHHHhC-Cccccc-----cchhH
Confidence 34566644 34444556666665555543 457789999999999999999999995 556555 56666
Q ss_pred HHhhhHHHHHHHHhCC
Q psy5548 87 AVAYGAAVQAAILHGD 102 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~ 102 (183)
|+.|||+.|+..++.
T Consensus 451 -~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 451 -VALGAAMLAGAASGK 465 (516)
T ss_pred -HHHHHHHHHHhhcCC
Confidence 999999999987765
No 53
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=96.04 E-value=0.026 Score=47.52 Aligned_cols=51 Identities=14% Similarity=0.013 Sum_probs=33.9
Q ss_pred HHhhhhHHHhHHHHHHHHHh----hCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 16 ASAGEKPRSSTSEIVIKWLD----SNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~----~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.+.+++.++++..=+.+.++ +. ....|+.|+|+||.+++|.+.+.|++.++
T Consensus 245 ~~~l~~~~~~l~~EI~rsl~~y~~~~---~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 245 QDALRPFLEELAREIRRSLDFYQSQS---GGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 34455555555555555554 32 25689999999999999999999999885
No 54
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.85 E-value=0.02 Score=50.72 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=42.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-|...+++.+.|+ .++.. .+..|+.|+|||+.|..-.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g-~pv~~------~~~~e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFE-QEIVV------PESYESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcC-CeeEe------cCCCCcchHHHHHHHHHhcC
Confidence 48899999999999999999999995 55543 34557889999999987555
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.82 E-value=0.045 Score=46.67 Aligned_cols=45 Identities=18% Similarity=0.000 Sum_probs=39.4
Q ss_pred EEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 48 KQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 48 ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
|+|+||.+..-.+.+++++.++ .++... .+|.-+=|+|||+.|..
T Consensus 346 iv~~GGva~n~av~~ale~~lg-~~V~vP-----~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG-RKVIVP-----PYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC-CeeecC-----CccchhhHHHHHHHHhh
Confidence 9999999999999999999995 556555 68888999999999854
No 56
>PLN02295 glycerol kinase
Probab=95.77 E-value=0.03 Score=49.82 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=42.7
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-|...+++.+.|+ .++.. .+..|+.|+|||+.|+.-.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g-~pV~~------~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLG-SPVVR------PADIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcC-CceEe------cCccccHHHHHHHHHHhhcC
Confidence 47889999999999999999999995 55543 45678899999999987655
No 57
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.67 E-value=0.073 Score=46.58 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=41.8
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-+...+++.+.++ .++. . .. .|+.|+|||+.|..-.|.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg-~pV~-~-----~~-~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACG-IRVI-A-----GP-VEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhC-CceE-c-----CC-chHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999995 5553 2 33 678999999999875553
No 58
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=95.66 E-value=0.048 Score=45.59 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=37.8
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
..+++.|+|+||.+. .+++.|++.||...+... -||..|-|+|-..++
T Consensus 271 ~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~-----~dp~~ANarG~~~~g 318 (320)
T TIGR03739 271 PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV-----DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec-----CCcHHHHHHHHHHhh
Confidence 456999999999998 567889999986544444 689999999977654
No 59
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=95.65 E-value=0.005 Score=52.30 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc---------ccccCCCcccCCchhHHhhhHHH
Q psy5548 25 STSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ---------ANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~---------~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
.+.+.+.++++.+... ...-.+.|+|+||+|++|.+.+.|++.+... .+... .+|..++-+||++
T Consensus 269 ~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~-----~~~~~~aw~G~si 343 (371)
T cd00012 269 GISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAP-----PERKYSVWLGGSI 343 (371)
T ss_pred CHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccC-----CCccccEEeCchh
Confidence 5778888888765321 2345688999999999999999999866421 11223 5788899999999
Q ss_pred HHHH
Q psy5548 95 QAAI 98 (183)
Q Consensus 95 ~a~~ 98 (183)
.|..
T Consensus 344 ~as~ 347 (371)
T cd00012 344 LASL 347 (371)
T ss_pred hcCc
Confidence 9865
No 60
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.45 E-value=0.04 Score=49.10 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=42.4
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-|...+++.+.|+ .++.. ....|+.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg-~pV~~------~~~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTG-LPVKV------PVVKEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcC-CeeEE------ecccCchHHHHHHHHHHHhC
Confidence 47899999999999999999999995 55544 34557889999999987655
No 61
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.37 E-value=0.043 Score=46.10 Aligned_cols=52 Identities=10% Similarity=-0.037 Sum_probs=36.8
Q ss_pred hhhhHHHhHHHHHHHHHhhCCC-CCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPA-GREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~-~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.+++.++++..-+.+.|+-... .....++.|+|+||.+++|.+.+.+++.|+
T Consensus 255 ~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 255 VLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 3455556666666666642210 123469999999999999999999999995
No 62
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.31 E-value=0.095 Score=46.19 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=41.3
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|...+++.+.++ .++.. .. .|+.++|||+.|..-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg-~pV~~------~~-~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACG-IRVIA------GP-VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhC-CCeee------CC-hhHHHHHHHHHHHHHcCC
Confidence 47789999999999999999999995 55532 23 478899999998876553
No 63
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.17 Score=45.06 Aligned_cols=82 Identities=20% Similarity=0.049 Sum_probs=51.6
Q ss_pred ecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHh
Q psy5548 10 AERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 10 itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA 89 (183)
-+|.+|-+.+-+-+.-......+.|.+.. ...++.|.++||.++-+...+++.+.|+ ..+.. ....|+-+
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~~l~~~~---g~~~~~i~~~GGgars~~w~Qi~Ad~~g-~~v~~------~~~~e~~a 439 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLEALEELG---GKPPSRVRVVGGGARSPLWLQILADALG-LPVVV------PEVEEAGA 439 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccEEEEECCcccCHHHHHHHHHHcC-CeeEe------cCcccchH
Confidence 35555544443333333334445555542 2357799999999999999999999995 54533 34466676
Q ss_pred hhHHHHHHHHhC
Q psy5548 90 YGAAVQAAILHG 101 (183)
Q Consensus 90 ~GAa~~a~~l~~ 101 (183)
.|+|+.++...+
T Consensus 440 ~g~A~~~~~~~~ 451 (502)
T COG1070 440 LGGAALAAAALG 451 (502)
T ss_pred HHHHHHHHHHhC
Confidence 666666655443
No 64
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=94.81 E-value=0.024 Score=48.28 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc-----c--cccCCCcccC-CchhHHhhhHHHH
Q psy5548 25 STSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-----A--NSLVGTKTRH-DTCEAVAYGAAVQ 95 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~--~~~~~~~~~~-~p~eaVA~GAa~~ 95 (183)
-+.+++.+++.++... .+.-.+.|+|+||+|++|.+.+.|...+... . +... . +|..++=.||+++
T Consensus 290 gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~-----~~~~~~~aW~Ggsil 364 (393)
T PF00022_consen 290 GLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAP-----PSDRQFAAWIGGSIL 364 (393)
T ss_dssp CHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE-------T-TTTSHHHHHHHHH
T ss_pred hhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccC-----chhhhhcccccceee
Confidence 4667888888776431 1122478999999999999999998766331 1 2222 3 6888888999998
Q ss_pred HHH
Q psy5548 96 AAI 98 (183)
Q Consensus 96 a~~ 98 (183)
|..
T Consensus 365 asl 367 (393)
T PF00022_consen 365 ASL 367 (393)
T ss_dssp HTS
T ss_pred ecc
Confidence 864
No 65
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=93.93 E-value=0.27 Score=41.13 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=31.8
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcC--CcccccCCCcccCCchhHHhhhHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLV--HQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~--~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
..+++.|++|||.+. .+.+.|++.|+ ...+... -||..|-|+|-+
T Consensus 270 ~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~-----~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIV-----DDPQFANVRGFY 316 (318)
T ss_dssp S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE-------SSGGGHHHHHHH
T ss_pred hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEEC-----CCchhhHHHHHh
Confidence 467899999999996 56788888875 2334444 699999999864
No 66
>KOG2531|consensus
Probab=93.80 E-value=0.092 Score=45.91 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=42.0
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
...-+.|+.+||.|+-..|-+.+.+.|+ ..+. . ++-.++.|.|+|+.|+.
T Consensus 440 ~~~~~rilvtGGAS~N~~Ilq~iadVf~-apVy-~-----~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 440 SNPPTRILVTGGASRNEAILQIIADVFG-APVY-T-----IEGPNSAALGGAYRAAY 489 (545)
T ss_pred CCCCceEEEecCccccHHHHHHHHHHhC-CCeE-e-----ecCCchhhHHHHHHHHH
Confidence 4467899999999999999999999995 5453 3 67788999999999764
No 67
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=93.72 E-value=0.27 Score=42.06 Aligned_cols=79 Identities=11% Similarity=-0.050 Sum_probs=48.1
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
|++++-+.+-+.+.+-+.++... .+++.|+++||..+-|.+-+.|++.++...+..+ ....++++---|.+-|+.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~----~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~-~~~gi~~~~~EA~aFA~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP----PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTT-DELGIPPDAKEAMAFAWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEG-GGGTS-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecH-HHcCCCHHHHHHHHHHHH
Confidence 44555555556666666666643 3388999999999999999999999976444221 112255554455555666
Q ss_pred HHHH
Q psy5548 96 AAIL 99 (183)
Q Consensus 96 a~~l 99 (183)
|...
T Consensus 335 a~~~ 338 (364)
T PF03702_consen 335 AYRR 338 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 68
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=93.55 E-value=0.16 Score=40.10 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=41.6
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccC
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLV 76 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~ 76 (183)
.++|.+++..+++.+-++..+ +..+.|+||+|.-|.+.+.++.+| +-++...
T Consensus 206 ~v~PV~eKMAeIv~~hie~~~------i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P 257 (277)
T COG4820 206 VVKPVYEKMAEIVARHIEGQG------ITDLWLVGGACMQPGVEELFEKQL-ALQVHLP 257 (277)
T ss_pred chhHHHHHHHHHHHHHhccCC------CcceEEecccccCccHHHHHHHHh-ccccccC
Confidence 456778888888888887654 568999999999999999999999 4555443
No 69
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.83 E-value=0.63 Score=37.68 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=42.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc----ccccCCCcccCCchhHHhhhHHHHH
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ----ANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~----~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
..+.+.+.+..++++... ... .|+|.||-.+.+.+.+.|.+.+... ++... ..|....|.|||+.|
T Consensus 202 a~~~la~~i~~~~~~~~~--~~~--~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~~a~GAallA 271 (271)
T PF01869_consen 202 AADELAELIKAVLKRLGP--EKE--PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIP-----VEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHTCTC--CCC--SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECE-----CCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC--CCC--eEEEECCccCchHHHHHHHHHHHHhcCCCceEEC-----CCCCccHHHHHHHhC
Confidence 344455555566665543 111 2999999999977777775555322 22233 678888999999876
No 70
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=91.66 E-value=0.43 Score=42.56 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 29 IVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 29 ~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.|.+++++.+. .|+.+...||-.+-|.+.+.+.+.-+ ..+.. ...+++++.|+|+.++.-.+
T Consensus 420 ~Iie~~~~~g~----~Id~l~~sGG~~KN~llmql~aDvtg-~~v~i------~~s~~a~llGsAm~~avAag 481 (544)
T COG1069 420 AIIETFEDQGI----AIDTLFASGGIRKNPLLMQLYADVTG-RPVVI------PASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHHHHHHHcCC----eeeEEEecCCcccCHHHHHHHHHhcC-CeEEe------ecccchhhhHHHHHHHHHhc
Confidence 34455566654 59999999999999999999999985 43322 35689999999999987654
No 71
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=91.61 E-value=0.05 Score=46.18 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc-----c--cccCCCcccCCchhHHhhhHHHHH
Q psy5548 25 STSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-----A--NSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~--~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
.+.+++.++++++... ...-.+.|+|+||+|++|.+.+.|.+.+... + +... .++..++=.||++.|
T Consensus 271 ~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~-----~~~~~~~W~G~sila 345 (373)
T smart00268 271 GIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAP-----PERKYSVWLGGSILA 345 (373)
T ss_pred CHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecC-----CCCccceEeCccccc
Confidence 5677888888766421 1233467999999999999999998766221 1 1112 345566668988877
Q ss_pred HH
Q psy5548 97 AI 98 (183)
Q Consensus 97 ~~ 98 (183)
..
T Consensus 346 s~ 347 (373)
T smart00268 346 SL 347 (373)
T ss_pred Cc
Confidence 54
No 72
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=90.10 E-value=2 Score=36.82 Aligned_cols=77 Identities=13% Similarity=-0.006 Sum_probs=47.4
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
++++-+.+-+...|.+.++... ...+.|+++||..+-|.+-++|++.++ ..+... ....+++|---|..-|+.|
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~----~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~-~~~G~~~da~EA~aFA~La 336 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP----PGPDELLVCGGGARNPTLMERLAALLP-TEVATT-DALGIDGDAKEALAFAWLA 336 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCH-HHcCCChhHHHHHHHHHHH
Confidence 3444444445555555554432 234689999999999999999999996 333211 1111566655566667777
Q ss_pred HHH
Q psy5548 97 AIL 99 (183)
Q Consensus 97 ~~l 99 (183)
...
T Consensus 337 ~~~ 339 (365)
T PRK09585 337 VRT 339 (365)
T ss_pred HHH
Confidence 543
No 73
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=89.54 E-value=3.8 Score=34.32 Aligned_cols=50 Identities=20% Similarity=0.045 Sum_probs=39.4
Q ss_pred CCcEEeecC--ccchH-HHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 45 FEDKQKAVG--SHLYP-IITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 45 i~~ViLvGG--ss~iP-~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.+.|+|.|- +.+.| .+++.++++|. .++. . ++. +..|.|+|+-|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V~-~-----L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLS-CKVL-V-----LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhC-CCeE-E-----ecc-hhhhhhHHHHHHHHhCC
Confidence 448999986 99999 99999999995 3332 2 333 88999999999877765
No 74
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=88.29 E-value=0.91 Score=42.28 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCC--cccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVH--QANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~--~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
..++.|+|.||-.+-..+++.|.+.+.. -++... +...-.|.++++|.|+.|+
T Consensus 657 ~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p--~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 657 FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFH--RHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEcc--CCCCCCHHHHHHHHHHHhC
Confidence 3577899999999999999999887642 122211 0002348999999988763
No 75
>PTZ00281 actin; Provisional
Probab=87.99 E-value=0.093 Score=44.88 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc-----c--cccCCCcccCCchhHHhhhHHHHHH
Q psy5548 26 TSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-----A--NSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~--~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+++.+.+.++... ...-.+.|+|+||+|.+|.+.++|+..+... + +... .++..++=+||++.|.
T Consensus 275 i~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~-----~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 275 IHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP-----PERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecC-----CCCceeEEECcccccC
Confidence 556677777665321 1233468999999999999999888755321 1 1112 3556677789998875
Q ss_pred H
Q psy5548 98 I 98 (183)
Q Consensus 98 ~ 98 (183)
.
T Consensus 350 l 350 (376)
T PTZ00281 350 L 350 (376)
T ss_pred c
Confidence 3
No 76
>PTZ00452 actin; Provisional
Probab=87.14 E-value=0.23 Score=42.55 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc-----ccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 26 TSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-----ANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.+++.+.+.++... .+.-...|+|+||+|.+|.+.++|+..+... ++... ...++..++=+|+++.|..
T Consensus 274 i~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~---~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 274 IHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVA---APPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred hhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEe---cCCCcceeEEECchhhcCc
Confidence 456677777665421 2344579999999999999999988755321 11111 0024455666899988853
No 77
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=87.05 E-value=1.7 Score=35.91 Aligned_cols=72 Identities=6% Similarity=-0.126 Sum_probs=45.4
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecC-ccchHHHHHHHHhhcC--CcccccCCCcccCCchhHHhhhH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVG-SHLYPIITKLYQAWLV--HQANSLVGTKTRHDTCEAVAYGA 92 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGG-ss~iP~V~~~l~~~f~--~~~~~~~~~~~~~~p~eaVA~GA 92 (183)
|++++.++.-+.+-+-.+-.-+. ....+..|+++|| -+..|.+++.+...+. ..++..- -+..-.+|+||
T Consensus 204 eDiAaSLl~mV~~nIg~lA~~~a--~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp-----~h~~y~gAlGA 276 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQIAYLCA--LRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFL-----EHEGYSGAIGA 276 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEE-----CCcchHHHhhh
Confidence 44666665554443333222111 2456889999999 6678999999987552 1223233 46778899999
Q ss_pred HH
Q psy5548 93 AV 94 (183)
Q Consensus 93 a~ 94 (183)
++
T Consensus 277 aL 278 (279)
T TIGR00555 277 LL 278 (279)
T ss_pred cc
Confidence 85
No 78
>PTZ00004 actin-2; Provisional
Probab=86.16 E-value=0.18 Score=43.11 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc-----c--cccCCCcccCCchhHHhhhHHHHHH
Q psy5548 26 TSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-----A--NSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~--~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+++.+++.++... .+.-...|+|+||+|.+|.+.++|+..+... + +... .++..++=+||++.|.
T Consensus 277 i~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~-----~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 277 IHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAP-----PERKYSVWIGGSILSS 351 (378)
T ss_pred hHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecC-----CCCceeEEECcccccC
Confidence 556677777665421 1234478999999999999999988765321 1 1112 3555666688888775
No 79
>PTZ00466 actin-like protein; Provisional
Probab=85.47 E-value=0.25 Score=42.36 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc-----ccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 26 TSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-----ANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+++.+.+.++... .+.-...|+|+||+|.+|.+.++|+..+... ++... ...++..++=+||++.|.
T Consensus 279 l~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~---~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 279 LSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRIS---APPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEe---cCCCCceeEEECchhhcC
Confidence 456677777665421 2344578999999999999999998766321 11111 002445556689998875
No 80
>PRK00976 hypothetical protein; Provisional
Probab=85.44 E-value=3.9 Score=34.50 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=39.4
Q ss_pred CCCCcEEeecCccchH--HHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 43 GRFEDKQKAVGSHLYP--IITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP--~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
-|.+.|+|-||-++.+ .+.+.+++++.. .+ . .--.++-++|||+.|.-+.+.
T Consensus 262 lDPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~~--a-----~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 262 NPEDNVVLAGSVGEMDEPDVSERIKELLDK-KV--L-----VLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred cCCCEEEEcCccccCchhHHHHHHHHHhcc-cc--c-----ccCCchHHHHHHHHHHHHhCC
Confidence 3577899999999998 788888887743 22 2 334688999999999877554
No 81
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=84.78 E-value=1.4 Score=36.43 Aligned_cols=55 Identities=18% Similarity=0.029 Sum_probs=35.8
Q ss_pred CCCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHhhhHHHH
Q psy5548 41 REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 41 ~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
...+|+.|+|||||+.=--|-+++.+.+..- ...+.+.+.-.-|..|||.|..+.
T Consensus 272 niR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvls 328 (332)
T PF08841_consen 272 NIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLS 328 (332)
T ss_dssp SCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHH
T ss_pred CcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHh
Confidence 3578999999999998666667777765432 222233333368999999998764
No 82
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=84.64 E-value=5.2 Score=34.21 Aligned_cols=81 Identities=19% Similarity=0.052 Sum_probs=48.7
Q ss_pred cHHHHHHhhhhHHHh-HHHHHHHHHhhCCCCCCCCCCc-EEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHH
Q psy5548 11 ERQDLASAGEKPRSS-TSEIVIKWLDSNPAGREGRFED-KQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAV 88 (183)
Q Consensus 11 tR~~fe~l~~~l~~~-~~~~~~~~l~~~~~~~~~~i~~-ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaV 88 (183)
.++++..-++..+++ +.++++.++++.+ ++. +.|.||-..--..-..|.+..+-..+... ..--|+-.
T Consensus 134 ~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g------~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~----Pa~gD~G~ 203 (360)
T PF02543_consen 134 RHADLAASAQKVLEEIVLHLVRHLLERTG------IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVP----PAAGDAGL 203 (360)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHT--------SEEEEESGGGG-HHHHHHHHTSTT-SEEE------TTTSGGGH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCeEEEechHHHHHHHHHHHHhcCCCCeEEEC----CCCCCcch
Confidence 445555555555555 3455555555543 456 99999998888888888776332333221 02338899
Q ss_pred hhhHHHHHHHHhC
Q psy5548 89 AYGAAVQAAILHG 101 (183)
Q Consensus 89 A~GAa~~a~~l~~ 101 (183)
|+|||+++....+
T Consensus 204 aiGaA~~~~~~~~ 216 (360)
T PF02543_consen 204 AIGAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999986544
No 83
>PTZ00280 Actin-related protein 3; Provisional
Probab=84.37 E-value=0.63 Score=40.26 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 25 STSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
-+.+++.+.+.++... ..+-.+.|+|+||+|.+|.+.+.|++.+.
T Consensus 292 gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 292 PLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 3567777777766421 23445779999999999999999998774
No 84
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=82.54 E-value=5.1 Score=35.52 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
-++.++++..-++.+ ..++.+-.=||.++-.++-+...+..+ .++.+. .-.|.-|+|||+.|..-.|.
T Consensus 386 yQ~~dv~~aM~~d~~----~~~~~LrvDGG~s~n~~lmQfqADilg-~~V~Rp------~~~EtTAlGaA~lAGla~G~ 453 (499)
T COG0554 386 YQTRDVLEAMEKDSG----IKLTRLRVDGGASRNNFLMQFQADILG-VPVERP------VVLETTALGAAYLAGLAVGF 453 (499)
T ss_pred HHHHHHHHHHHHhcC----CCceeEEEcCccccchhHHHHHHHHhC-Ceeecc------ccchhhHHHHHHHHhhhhCc
Confidence 344555554444443 268889999999999999999999995 555443 45678999999999887763
No 85
>PRK03011 butyrate kinase; Provisional
Probab=81.21 E-value=3.2 Score=35.45 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCC---cccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVH---QANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~---~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++|.|++.||-+.-+.+++.+++.+.. ..+..+ -+-++|.+.||+ ..+.+.
T Consensus 294 gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~-----~~e~~A~a~GA~---rvl~g~ 348 (358)
T PRK03011 294 GKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPG-----EDEMEALAEGAL---RVLRGE 348 (358)
T ss_pred CCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeC-----CCHHHHHHHHHH---HHHcCC
Confidence 4799999999999888888888775532 233344 566789999986 556664
No 86
>PRK09604 UGMP family protein; Validated
Probab=81.12 E-value=4.7 Score=33.98 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=49.4
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHhhhHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA~GAa 93 (183)
.+++..+-..+.+.+.++++.+. ....++.|+|.||-..-..+++.|.+..... .+... +...--|.++++|+|
T Consensus 228 ~~iA~s~q~~l~~~l~~~~~~~~--~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~--~~~p~~D~gisIg~a 303 (332)
T PRK09604 228 ADIAASFQAAVVDVLVIKTKRAL--KQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIP--PLKLCTDNAAMIAAA 303 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECC--CCCCCcHHHHHHHHH
Confidence 34444444444444444444432 1245778999999999999999999887322 22221 011234889999998
Q ss_pred HHHHHHhC
Q psy5548 94 VQAAILHG 101 (183)
Q Consensus 94 ~~a~~l~~ 101 (183)
=+-....|
T Consensus 304 g~~~~~~g 311 (332)
T PRK09604 304 GYERLKAG 311 (332)
T ss_pred HHHHHHcC
Confidence 55444444
No 87
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=80.04 E-value=6.9 Score=33.27 Aligned_cols=55 Identities=18% Similarity=0.038 Sum_probs=39.0
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCCc---ccccCCCcccCCc----hhHHhhhHHHHHHHHhCC
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVHQ---ANSLVGTKTRHDT----CEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~~---~~~~~~~~~~~~p----~eaVA~GAa~~a~~l~~~ 102 (183)
..+.+.|+|.|--+++|-+.+.+++.|.+. ++ .. ..+ -...|.|||+-|.-+.+.
T Consensus 258 ~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~-----l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 258 VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RK-----LEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred cCCCCEEEEeccccccHHHHHHHHHHHHhhcccce-ee-----cccccccchhhhhhHHHHhhhhhcc
Confidence 356789999999999999988888777321 11 11 222 133889999999877765
No 88
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=79.98 E-value=3.8 Score=34.28 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=44.0
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHhhhHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA~GAa 93 (183)
++++.+-..+.+.+.+++..+. ....++.|+|.||-..-..+++.|.+..... .+... +...--|.++++|+|
T Consensus 234 ~iA~~~q~~l~~~l~~~~~~~~--~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~--~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 234 DIAASFQAAVVDVLVEKTKRAL--KKTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIP--PLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC--CCCCCChHHHHHHHH
Confidence 4444444444444444444432 1235778999999999999999999876321 22111 011234888999986
No 89
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=79.91 E-value=10 Score=36.66 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=53.6
Q ss_pred eecHHHHHHhhh---hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcc---cc--------
Q psy5548 9 KAERQDLASAGE---KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQA---NS-------- 74 (183)
Q Consensus 9 ~itR~~fe~l~~---~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~---~~-------- 74 (183)
.|+.++....+. --+.++..-+-+++... +-|.++|.|-.|++|.||..++++.+-.. +.
T Consensus 734 ~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y------~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~ 807 (1002)
T PF07520_consen 734 EIDLEKLHAAFLSDRMVICKTLRALCEVVHHY------DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGN 807 (1002)
T ss_pred EEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh------CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeecc
Confidence 566777666553 34444444444444432 35689999999999999999998764210 10
Q ss_pred ---cCCCcccCCchhHHhhhHHHHHHH
Q psy5548 75 ---LVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 75 ---~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
.+...-.-||.+.||.||.+.+-.
T Consensus 808 WYPF~~~~rI~dPKTTaaVGAmLc~La 834 (1002)
T PF07520_consen 808 WYPFNDQGRIDDPKTTAAVGAMLCLLA 834 (1002)
T ss_pred cccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 000112249999999999776543
No 90
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=78.95 E-value=1.1 Score=39.50 Aligned_cols=55 Identities=20% Similarity=0.130 Sum_probs=37.7
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCCcccc--cCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVHQANS--LVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~--~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.-...|+|+||+|.+|.+.+.|.+.+...... ...+-...+|...+=+||++.|.
T Consensus 361 ~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 361 SLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred HHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 44678999999999999999988866322111 00011114777778899999886
No 91
>KOG0681|consensus
Probab=78.12 E-value=2.9 Score=37.61 Aligned_cols=73 Identities=18% Similarity=0.080 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCccccc--CCCcccCCchhHHhhhHHHHHHH
Q psy5548 26 TSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSL--VGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~--~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.+++..+|.+.-.. ..-.+..|+|+||-+.+|.+.+.|...+-+-.+.. -++-.+-||--..=+||+..|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 445555556554221 01228899999999999999999987553221110 01112268877778999887764
No 92
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=76.71 E-value=7 Score=34.95 Aligned_cols=82 Identities=5% Similarity=-0.081 Sum_probs=48.3
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHhhhHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA~GAa 93 (183)
++++..+-..+.+.+.+.+..+.. ...+..|+|.||-..-..+++.|.+.+... ++... +...-.|.+++.|+|
T Consensus 219 ~~iA~~~q~~l~~~l~~~~~~~~~--~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~--~~~~~~D~g~~ia~a 294 (535)
T PRK09605 219 EDVCYSLQETAFAMLTEVTERALA--HTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVP--EPRFCGDNGAMIAWL 294 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC--CCccccchHHHHHHH
Confidence 344544444444444444444321 234668999999999999999999665221 22111 011244889999998
Q ss_pred HHHHHHhC
Q psy5548 94 VQAAILHG 101 (183)
Q Consensus 94 ~~a~~l~~ 101 (183)
.+.....+
T Consensus 295 ~~~~~~~g 302 (535)
T PRK09605 295 GLLMYKAG 302 (535)
T ss_pred HHHHHHcC
Confidence 76555443
No 93
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=75.15 E-value=8.1 Score=31.22 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhH
Q psy5548 27 SEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGA 92 (183)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GA 92 (183)
.+.++..++... ...+|.| |=|.|++|.+.+.+++.|+.. + .- +||.+++|+=+
T Consensus 158 ~~~l~~~l~~l~---~~~~d~l--ILGCTh~P~l~~~i~~~~~~~-v-~~-----IDp~~~la~~~ 211 (251)
T TIGR00067 158 LECLKRYLRPLL---DTLPDTV--VLGCTHFPLLKEEIEQYLPEH-V-RL-----VDSGVHTARRT 211 (251)
T ss_pred HHHHHHHHHHHh---cCCCCEE--EECcCChHHHHHHHHHHcCCC-c-EE-----ECCHHHHHHHH
Confidence 334455554431 2345655 559999999999999999632 3 33 89988887655
No 94
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.84 E-value=7 Score=33.10 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=43.8
Q ss_pred hhhhHHHhHHHHHHHHHh----hCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 18 AGEKPRSSTSEIVIKWLD----SNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~----~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
+..++++...+-+.+.|+ .. ...+|+.++|.||...+-.+.+.+.+..+ ... .. .||-..-+..+.
T Consensus 260 vl~~f~~~l~~ei~Rslqfy~~~s---~~~~id~i~LaGggA~l~gL~~~i~qrl~-~~t-~v-----anPf~~~~~~~~ 329 (354)
T COG4972 260 VLRPFLGELTQEIRRSLQFYLSQS---EMVDIDQILLAGGGASLEGLAAAIQQRLS-IPT-EV-----ANPFAYMALNVK 329 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---ccceeeEEEEecCCcchhhHHHHHHHHhC-CCe-Ee-----eCHHHHHhhhhc
Confidence 344444444444454444 43 35789999999999999999999999884 322 23 677554444443
Q ss_pred H
Q psy5548 94 V 94 (183)
Q Consensus 94 ~ 94 (183)
.
T Consensus 330 v 330 (354)
T COG4972 330 V 330 (354)
T ss_pred c
Confidence 3
No 95
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=72.17 E-value=7.5 Score=31.67 Aligned_cols=68 Identities=16% Similarity=0.035 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCC------cccccCCCcccCCchhHHhhhHHHH
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVH------QANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~------~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
+++++...+-..+...- ..-+.+.|++-|+.+..+.+-+.+++.... ..+..+ ...+.+.++|||..
T Consensus 213 ~~~~~~~~la~~l~~l~--~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s-----~~~~~~~~~GAa~~ 285 (291)
T PRK05082 213 LINRSAQAIARLIADLK--ATLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAA-----HYRHDAGLLGAALW 285 (291)
T ss_pred HHHHHHHHHHHHHHHHH--HHhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEEC-----ccCCchhhhhHHHH
Confidence 44444444444443321 123567888877766555444445444321 112222 34467789999987
Q ss_pred H
Q psy5548 96 A 96 (183)
Q Consensus 96 a 96 (183)
+
T Consensus 286 ~ 286 (291)
T PRK05082 286 A 286 (291)
T ss_pred h
Confidence 5
No 96
>PRK00865 glutamate racemase; Provisional
Probab=71.77 E-value=11 Score=30.57 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
..+.+.+.++... ...+|.|+ =|.|++|.+.+.+++.++. .+ .- +||.+++|+=+.
T Consensus 162 ~~~~l~~~l~~l~---~~g~d~iI--LGCTh~p~l~~~i~~~~~~-~v-~v-----IDp~~~~a~~~~ 217 (261)
T PRK00865 162 TLEVLREYLAPLL---AAGIDTLV--LGCTHYPLLKPEIQQVLGE-GV-TL-----IDSGEAIARRVA 217 (261)
T ss_pred HHHHHHHHHHHHh---cCCCCEEE--ECCcCHHHHHHHHHHHcCC-CC-EE-----ECCHHHHHHHHH
Confidence 4445555555442 23466654 4889999999999999853 22 33 899888877664
No 97
>KOG0679|consensus
Probab=71.36 E-value=4.4 Score=34.94 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=34.6
Q ss_pred CCCcEEeecCccchHHHHHHHHh----hcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQA----WLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~----~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
-...|+++||.|.||.+.++|.. .+|+.++....+..-.+-.-++=+|+.+.|.
T Consensus 341 L~~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILAS 398 (426)
T KOG0679|consen 341 LLGNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILAS 398 (426)
T ss_pred hhccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhc
Confidence 35689999999999999888775 5555443222111223444556678877764
No 98
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=69.28 E-value=7.1 Score=33.24 Aligned_cols=52 Identities=4% Similarity=-0.084 Sum_probs=34.6
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
+++|..+-+-+.+.+.+-++.+- ....+..++++||-+.-..+|++|++...
T Consensus 237 ~diaasfq~~v~~~L~~k~~~a~--~~~~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 237 DDLCFSLQETIFAMLVEVTERAM--SHCGSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 45666654444444444333332 12346789999999999999999999863
No 99
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=69.00 E-value=11 Score=30.99 Aligned_cols=49 Identities=12% Similarity=-0.106 Sum_probs=27.5
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCC--------cccccCCCcccCCchhHHhhhHHHHH
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVH--------QANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~--------~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
-+.+.|+|-||-+..|.+.+.+++.+.. ..+..+ ...+.+.++|||..+
T Consensus 244 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s-----~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 244 VDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKA-----RHGDAGGVRGAAFLH 300 (303)
T ss_pred cCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEc-----ccCchHHHHhHHHHh
Confidence 3566788877666544444444443321 112222 345778999999765
No 100
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=67.89 E-value=18 Score=30.72 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=38.8
Q ss_pred eecHHHHHHhhhhHHHh----HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 9 KAERQDLASAGEKPRSS----TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~----~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+++.++.+++|..+-+- ..+..+++|+.. ..+.++++||-+.-..+|++++++.
T Consensus 228 ~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~------~~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 228 ELNEEDKEDIAASFQEAVFDMLVEKTERALKHT------GKKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCEEEEeccHHHhHHHHHHHHHHH
Confidence 34556677788776444 444555555544 3557999999999999999999866
No 101
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=67.22 E-value=19 Score=30.08 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=38.3
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcC---CcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLV---HQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~---~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
+..+|.|+|+||-.+--.+-++++++.. .-.+... -|-.+|.|.||. ..|.|.
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PG-----E~EleALA~G~l---RVL~Ge 349 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPG-----EDELEALAEGAL---RVLRGE 349 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCC-----chHHHHHHhhhH---HHhhcc
Confidence 6889999999999999888888887542 1123333 466788899985 455554
No 102
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=66.09 E-value=8.3 Score=31.73 Aligned_cols=69 Identities=10% Similarity=-0.176 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch-HHHHHHHHhhcCC---------cccccCCCcccCCchhHHhhh
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY-PIITKLYQAWLVH---------QANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i-P~V~~~l~~~f~~---------~~~~~~~~~~~~~p~eaVA~G 91 (183)
++++..+.+-.++...- ..-+.+.|+|-|+-+.. |.+.+.+++.+.. .++..+ ...+.++++|
T Consensus 231 i~~~~~~~L~~~i~~~~--~~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s-----~~~~~~~~~G 303 (318)
T TIGR00744 231 SYREVARWAGAGLADLA--SLFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAA-----QLGNDAGLVG 303 (318)
T ss_pred HHHHHHHHHHHHHHHHH--HHhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEc-----ccCCchhhHH
Confidence 44444444444443321 12355678877765542 3444444433311 112223 3446789999
Q ss_pred HHHHHH
Q psy5548 92 AAVQAA 97 (183)
Q Consensus 92 Aa~~a~ 97 (183)
||..+.
T Consensus 304 aa~~~~ 309 (318)
T TIGR00744 304 AADLAR 309 (318)
T ss_pred HHHHHH
Confidence 997764
No 103
>PRK09557 fructokinase; Reviewed
Probab=63.16 E-value=13 Score=30.46 Aligned_cols=49 Identities=10% Similarity=-0.126 Sum_probs=27.1
Q ss_pred CCCCcEEeecCccchHHHH----HHHHhhcCC----cccccCCCcccCCchhHHhhhHHHHH
Q psy5548 43 GRFEDKQKAVGSHLYPIIT----KLYQAWLVH----QANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~----~~l~~~f~~----~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
-+.+.|+|-||-+..+.+- +.++++... .++..+ .-.+.+.++|||..+
T Consensus 243 ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s-----~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 243 LDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKA-----LHGDSSGVRGAAWLW 299 (301)
T ss_pred hCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEc-----ccCCchhhhhhhHhh
Confidence 4566788877766555444 444433211 112222 344678899998754
No 104
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=62.04 E-value=7.5 Score=20.42 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.0
Q ss_pred CCceeecHHHHHHhhhhH
Q psy5548 5 NGRRKAERQDLASAGEKP 22 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l 22 (183)
|+...|+.+||-++++.+
T Consensus 12 d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 12 DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TSSSEEEHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHhC
Confidence 677899999999988753
No 105
>KOG0797|consensus
Probab=61.15 E-value=3.9 Score=36.59 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCC-----c-ccccCCC-cc--cCCchhHHhhhHHH
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVH-----Q-ANSLVGT-KT--RHDTCEAVAYGAAV 94 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~-----~-~~~~~~~-~~--~~~p~eaVA~GAa~ 94 (183)
+.++..++.++.... .+.-.+.+++|||+...|.+.+.|++..-. . .+..... +. ..||.-.+=.|||+
T Consensus 508 qsii~sid~~~sdd~--~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaI 585 (618)
T KOG0797|consen 508 QSIISSIDSALSDDT--KRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAI 585 (618)
T ss_pred hhHHHhhhhhccchh--hHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhh
Confidence 335555565655432 245578999999999999999999986532 1 1111000 00 13454444499999
Q ss_pred HHHHHh
Q psy5548 95 QAAILH 100 (183)
Q Consensus 95 ~a~~l~ 100 (183)
+|.+-.
T Consensus 586 la~l~~ 591 (618)
T KOG0797|consen 586 LAILDF 591 (618)
T ss_pred hhHHHH
Confidence 997654
No 106
>KOG0676|consensus
Probab=56.10 E-value=8.1 Score=33.25 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+.-...++|+||+|.+|.+.++|++..
T Consensus 288 k~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 288 KDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred HHHHhheEEeCCcccchhHHHHHHHHH
Confidence 455678999999999999999888755
No 107
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=55.82 E-value=86 Score=27.03 Aligned_cols=57 Identities=16% Similarity=-0.020 Sum_probs=43.5
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAIL 99 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l 99 (183)
..+-+.++++||..+-|.+.+.|...+++..+.. +....+++|..-|.+=|+.|...
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~-t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVAT-TDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeee-chhcCCCcchhhHHHHHHHHHHH
Confidence 5677899999999999999999999997644432 22333788887788878877654
No 108
>KOG2872|consensus
Probab=55.13 E-value=48 Score=27.78 Aligned_cols=72 Identities=18% Similarity=-0.021 Sum_probs=51.2
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhH
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEA 87 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ea 87 (183)
..+|-++|++.+-|.+.++.+-+.+-+.+.++ ..|--|+..-|+.. .+.++-+.-+.-.-+.-+ +||.|+
T Consensus 218 geLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~---~~vPmi~fakG~g~--~Le~l~~tG~DVvgLDWT-----vdp~ea 287 (359)
T KOG2872|consen 218 GELSPEDFEEFSLPYLRQIAEAVKKRLPELGL---APVPMILFAKGSGG--ALEELAQTGYDVVGLDWT-----VDPAEA 287 (359)
T ss_pred ccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcC---CCCceEEEEcCcch--HHHHHHhcCCcEEeeccc-----ccHHHH
Confidence 36899999999999999999999999998764 56888888888875 233333333311124455 677765
Q ss_pred Hh
Q psy5548 88 VA 89 (183)
Q Consensus 88 VA 89 (183)
+-
T Consensus 288 r~ 289 (359)
T KOG2872|consen 288 RR 289 (359)
T ss_pred HH
Confidence 44
No 109
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.89 E-value=36 Score=28.00 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEE
Q psy5548 90 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVM 129 (183)
Q Consensus 90 ~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~ 129 (183)
.|-|++|..+++. .++.+.|+.+.++.+.+.+|+.
T Consensus 141 lgiay~a~~~~g~-----ed~VvsDiSSNTVtllvkdGkv 175 (332)
T COG4020 141 LGIAYLAYLLSGS-----EDFVVSDISSNTVTLLVKDGKV 175 (332)
T ss_pred hhHHHHHHHHcCc-----cceEEEeccCCeEEEEEEcCeE
Confidence 7889999999886 6889999999999998888754
No 110
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=53.74 E-value=46 Score=27.81 Aligned_cols=46 Identities=2% Similarity=-0.119 Sum_probs=30.8
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHhhh
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA~G 91 (183)
.+..|+|.||-..-..+++.|.+.+... ++... +...-.|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~--~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVP--PPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcC--CCCCCchHHHHHH
Confidence 4678999999999999999999855221 22211 0012337778888
No 111
>PLN03172 chalcone synthase family protein; Provisional
Probab=53.64 E-value=34 Score=29.54 Aligned_cols=46 Identities=11% Similarity=-0.085 Sum_probs=37.3
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc-chHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH-LYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss-~iP~V~~~l~~~f~ 69 (183)
.+=..+.++++|+++++ .+++||.|+.+-.+. .+|.+.-.|.+.++
T Consensus 103 ~~La~~Aa~~aL~~ag~-~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 103 PKLGKEAAAKAIKEWGQ-PKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 44466778889999998 499999998777554 69999999999885
No 112
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=53.36 E-value=28 Score=27.67 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=32.5
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
+++.+.+.+.+.+.+.+.+++.+ .-.+.|.||||-.|..+.+.+
T Consensus 6 ~~l~~~~a~~i~~~i~~~i~~~~------~~~lalsGGstp~~~y~~L~~ 49 (233)
T TIGR01198 6 AELAEALAERIATKLQTALAERG------QFSLALSGGRSPIALLEALAA 49 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------cEEEEECCCccHHHHHHHHhh
Confidence 45566666677777777776543 237899999999999887775
No 113
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=53.33 E-value=78 Score=24.65 Aligned_cols=46 Identities=7% Similarity=-0.119 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc--hHHHHHHHHhhcCC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL--YPIITKLYQAWLVH 70 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~--iP~V~~~l~~~f~~ 70 (183)
+-....++++|+++++. +++|+.|++...+.. .|.....+...++-
T Consensus 9 ~l~~~A~~~al~~ag~~-~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 9 ELGFEAAEQAIADAGLS-KGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHHHcCCC-CCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 33567788899999984 889999987765444 58888888888864
No 114
>PRK14878 UGMP family protein; Provisional
Probab=52.99 E-value=44 Score=27.98 Aligned_cols=50 Identities=6% Similarity=-0.034 Sum_probs=31.8
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+++..+...+.+.+.+..+.+.. ...+..|+|.||-..-..+++.+.+.+
T Consensus 216 diAa~fq~~l~~~l~~~~~~~~~--~~g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 216 DVCYSLRETAFAMLVEVTERALA--HTGKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 34444434444444443333321 234678999999999999999999876
No 115
>KOG0680|consensus
Probab=50.78 E-value=9.2 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.023 Sum_probs=22.6
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+.-+..|+++||+++.|..++.|...+
T Consensus 315 p~l~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 315 PLLLENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HHHHhcEEEecCccCCcchHHHHHHHH
Confidence 344568999999999999999998765
No 116
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=50.76 E-value=47 Score=27.34 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
++|-++| |.|+.|.+++.+++.+|. .+. - +|+-+++|+..+
T Consensus 177 ~~DtlVL--GCTHyPll~~~i~~~~~~-~v~-l-----ids~~~~a~~~~ 217 (269)
T COG0796 177 GPDTLVL--GCTHYPLLKPEIQQVLGE-HVA-L-----IDSGAETARRLA 217 (269)
T ss_pred CCCEEEE--eCcCcHHHHHHHHHHhCC-Cce-E-----eCCHHHHHHHHH
Confidence 4665555 999999999999999974 332 3 688777776654
No 117
>PLN03170 chalcone synthase; Provisional
Probab=50.54 E-value=38 Score=29.34 Aligned_cols=47 Identities=9% Similarity=-0.132 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc-chHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH-LYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss-~iP~V~~~l~~~f~~ 70 (183)
.+=..+.++++|+++++ .++|||.|+.+-.+. .+|.+.-.|.+.++-
T Consensus 107 ~~La~~Aa~~AL~~ag~-~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 154 (401)
T PLN03170 107 PKLGKAAAQKAIKEWGQ-PKSKITHLVFCTTSGVDMPGADYQLTKMLGL 154 (401)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEccCCCCCChHHHHHHHHhCc
Confidence 44467778889999998 599999998876544 599999999998853
No 118
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=50.50 E-value=19 Score=25.26 Aligned_cols=48 Identities=2% Similarity=-0.098 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCCc
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVHQ 71 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~~ 71 (183)
-....+.++++|+++++ ++++|+.|..-|-++.. +.=.+.+.+.|+..
T Consensus 24 ~~~~~~~i~~al~~agi-~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 24 GAALARAIRRALADAGI-SPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHHHHHHTS--GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhcc-ccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 34456779999999998 49999999998877665 44556777888643
No 119
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=50.19 E-value=37 Score=28.93 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=42.1
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
|...++..+++..+++++|+++++. .+|||.|-..=|...++.+.--+.
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~-~~dID~IA~T~gPGL~gaL~VG~~ 92 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVS-LEDIDAIAVTAGPGLGGALLVGAT 92 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCC-cccCCEEEEecCCCchhHHHHHHH
Confidence 4566778999999999999999984 899999999999999998875443
No 120
>PRK09698 D-allose kinase; Provisional
Probab=49.01 E-value=28 Score=28.39 Aligned_cols=50 Identities=16% Similarity=-0.057 Sum_probs=30.6
Q ss_pred CCCCcEEeecCccc-----hHHHHHHHHhhcC----C--cccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSHL-----YPIITKLYQAWLV----H--QANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss~-----iP~V~~~l~~~f~----~--~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
-+.+.|+|-||-+. .+.+++.++++.. . ..+..+ ...+.+.++|||..+.
T Consensus 235 ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~-----~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 235 FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYA-----SSSDFNGAQGAAILAH 295 (302)
T ss_pred hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEEC-----CcCCcccHHhHHHHHH
Confidence 35677888777654 3456677766442 1 112233 4457788999998764
No 121
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=48.49 E-value=20 Score=30.40 Aligned_cols=38 Identities=8% Similarity=-0.035 Sum_probs=31.6
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchH
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYP 58 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP 58 (183)
+.......+.++++|+++++. .+|||.+++-+++.++-
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~-~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLT-PADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-HHHCCEEEECCCCHHHH
Confidence 344556778899999999984 99999999999998854
No 122
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=48.06 E-value=45 Score=29.18 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=39.2
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH-hhcCC
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ-AWLVH 70 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~-~~f~~ 70 (183)
...||..+.+++-.- -.-+..-++-+|+++++ +.+||+.|+|.||-...=-+++.+. .++|.
T Consensus 292 ~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi-~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~ 354 (412)
T PF14574_consen 292 DIYITQKDIREFQLA-KAAIRAGIEILLEEAGI-SPEDIDRVYLAGGFGNYLDPESAIRIGLLPD 354 (412)
T ss_dssp -EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT---GGG--EEEEECSS-SEEEHHHHHHTTSS--
T ss_pred CEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCC-CHHHccEEEEeCcccccCCHHHHhhcCCCCC
Confidence 467888887654322 22255667788899998 4999999999999887766666665 45554
No 123
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=48.04 E-value=29 Score=29.01 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=35.6
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHH
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIIT 61 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~ 61 (183)
..+...+.+...++++|+++++ +..|||.|.+.-|....+.++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~-~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGV-SLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCchHHhHH
Confidence 3445677788899999999998 489999999999887777666
No 124
>PLN03173 chalcone synthase; Provisional
Probab=47.64 E-value=46 Score=28.74 Aligned_cols=45 Identities=11% Similarity=-0.080 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc-chHHHHHHHHhhcC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH-LYPIITKLYQAWLV 69 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss-~iP~V~~~l~~~f~ 69 (183)
+=..+.++++|+++++ .++|||.|+.+.-+. ..|.+.-.|.+.++
T Consensus 104 ~La~~Aa~~AL~~ag~-~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 104 KLGKEAAAKAIKEWGQ-PKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHcCC-CHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 4466778889999998 499999999876544 58999999998885
No 125
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=46.94 E-value=24 Score=19.12 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=15.5
Q ss_pred eecHHHHHHhhhhHHHhHH
Q psy5548 9 KAERQDLASAGEKPRSSTS 27 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~~~ 27 (183)
.++..+|++|+.|++..+.
T Consensus 7 ~Ls~~~F~eL~~DV~~E~~ 25 (31)
T PF08518_consen 7 RLSNQRFEELATDVYDELD 25 (31)
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 5788899999999887654
No 126
>PRK14878 UGMP family protein; Provisional
Probab=45.74 E-value=24 Score=29.56 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=36.2
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITK 62 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~ 62 (183)
...+...+.+...++++|+++++ +..|||.|.+.-|....+.++-
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~-~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGI-SIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCCcccchHH
Confidence 34455677788999999999998 4899999999988777776653
No 127
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=44.45 E-value=32 Score=28.69 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=40.7
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
...+..-+.+...++++|+++++ +..+||.|...-|....+.+|--+.
T Consensus 44 ~~~~~H~~~l~~~i~~~l~~~~~-~~~~id~iav~~GPGsftglrig~~ 91 (314)
T TIGR03723 44 LASRAHLEAIPPLIEEALAEAGL-TLSDIDAIAVTAGPGLIGALLVGVS 91 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCChHHhHHHHHH
Confidence 34566788899999999999998 4899999999999999999875544
No 128
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=43.82 E-value=34 Score=29.12 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=34.6
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcc---cccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQA---NSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~---~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
++|.|++.||-+..+.+++.+.+.+..-. +... -+-.++.|.||. ..+.+.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg-----~~e~~ala~ga~---rv~~~~ 346 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG-----EDEMEALAEGAL---RVLRGE 346 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC-----cHHHHHHHHhHH---HHhcCC
Confidence 78999999999988888888887663221 1222 355677888875 344543
No 129
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=43.72 E-value=34 Score=26.87 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=31.1
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhh
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~ 67 (183)
+.+.+.+.+.+.+++.+++.+ .-.+.|.||||-.+..+.+....
T Consensus 3 l~~~~a~~i~~~i~~~i~~~~------~~~l~lsGGstp~~~y~~L~~~~ 46 (219)
T cd01400 3 LAEALADRIAEALAAAIAKRG------RFSLALSGGSTPKPLYELLAAAP 46 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhcC------eEEEEECCCccHHHHHHHhcccc
Confidence 445556666677777776543 23789999999999988877643
No 130
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=43.48 E-value=42 Score=27.81 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=40.2
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
...+...+.+..+++++|+++++ +..|||.|.+.-|....+.+|--+.
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~-~~~did~iav~~GPG~~tglrvg~~ 90 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNV-DKSEIDLIAYTQGPGLGGSLRVGAT 90 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCCchhhHHHHHH
Confidence 34555788899999999999998 4999999999999999999885443
No 131
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=42.40 E-value=41 Score=28.71 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=40.1
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLY 64 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l 64 (183)
...+...+++..+++++|+++++ +..+||.|-..-|....|.++--+
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~-~~~did~Iavt~GPGl~~~LrVG~ 90 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKI-TPSDISLICYTKGPGMGAPLSVGA 90 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCCcHhhHHHHH
Confidence 45667889999999999999998 489999999999999888877544
No 132
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=42.08 E-value=24 Score=29.23 Aligned_cols=50 Identities=4% Similarity=-0.023 Sum_probs=32.4
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+++..+-+.+.+.+.++.+.+. ....++.|+|.||-..-..+++.|.+..
T Consensus 233 ~iAasfq~~l~~~l~~~~~~~~--~~~g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 233 DIAYSFQETAFDHLIEKTKRAL--KDTGPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHcCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444443444444444443332 1235778999999999999999999876
No 133
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=42.08 E-value=21 Score=29.06 Aligned_cols=46 Identities=4% Similarity=0.020 Sum_probs=37.7
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
-+...+.+..+++++|+++++ +..|||.|...-|....+.+|--+.
T Consensus 26 ~r~H~~~L~~~i~~~l~~~~~-~~~did~iavt~GPGsftgLrvG~~ 71 (268)
T PF00814_consen 26 SRQHSENLPPLIEELLKEAGI-SLSDIDAIAVTRGPGSFTGLRVGLS 71 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--GGGESEEEEEEESS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCCcccccHHHHH
Confidence 355678899999999999998 4899999999999999998875544
No 134
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=41.87 E-value=39 Score=25.74 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCCCcEEeecCcc---chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 43 GRFEDKQKAVGSH---LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 43 ~~i~~ViLvGGss---~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
++.|.|++.||.. ..|.+.+.++. +... -|--.+.+|+-+.|..+.+.
T Consensus 42 ~~~d~iIi~gGp~~~~~~~~~~~~i~~-~~~~-----------~PiLGIClG~Qlla~~~Gg~ 92 (190)
T PRK06895 42 ENFSHILISPGPDVPRAYPQLFAMLER-YHQH-----------KSILGVCLGHQTLCEFFGGE 92 (190)
T ss_pred ccCCEEEECCCCCChHHhhHHHHHHHH-hcCC-----------CCEEEEcHHHHHHHHHhCCe
Confidence 3568899999987 55666666654 3222 23445889999888887654
No 135
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=41.45 E-value=25 Score=17.62 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.8
Q ss_pred CCceeecHHHHHHh
Q psy5548 5 NGRRKAERQDLASA 18 (183)
Q Consensus 5 ~~~~~itR~~fe~l 18 (183)
|+...||.+||.++
T Consensus 11 d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 11 DGDGKISFEEFQRL 24 (25)
T ss_dssp TSSSEEEHHHHHHH
T ss_pred CCCCcCCHHHHHHH
Confidence 67789999999875
No 136
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=41.30 E-value=1.2e+02 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEE
Q psy5548 90 YGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVM 129 (183)
Q Consensus 90 ~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~ 129 (183)
.|-|+.|+...+. +++.+.|+.+.++.+.+.+|+.
T Consensus 135 i~iay~a~~~~~~-----~~~ivsDiSSNTVtlaVk~GKI 169 (326)
T TIGR03281 135 VSIAYNAYCLTGF-----KDFIVSDISSNTVTLLIKDGKI 169 (326)
T ss_pred HHHHHHHHHHcCC-----CCEEEEecCCCeEEEEEECCEE
Confidence 6888888776664 7889999999999999888754
No 137
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=40.88 E-value=1.4e+02 Score=24.30 Aligned_cols=26 Identities=4% Similarity=-0.174 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHhhCCCCC----CCCCCcEEe
Q psy5548 24 SSTSEIVIKWLDSNPAGR----EGRFEDKQK 50 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~----~~~i~~ViL 50 (183)
+-....++++|+++++ . ..+++.|++
T Consensus 13 ~l~~~aa~~aL~~Ag~-~~~~~~~~i~~ii~ 42 (332)
T cd00825 13 ILGFEAAERAIADAGL-SREYQKNPIVGVVV 42 (332)
T ss_pred HHHHHHHHHHHHHcCC-CccccCCCCEEEEE
Confidence 3467788999999987 5 678888875
No 138
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=40.80 E-value=71 Score=24.63 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=28.5
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhh
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~ 67 (183)
+.+-+.+.+.+.+.+++.+ --.|.|.||+|-.+..+.+....
T Consensus 3 ~~~a~~i~~~i~~~i~~~~------~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERG------RAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCS------SEEEEE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHhhhc
Confidence 4455666777777776643 24788999999999888777754
No 139
>PLN02377 3-ketoacyl-CoA synthase
Probab=40.44 E-value=88 Score=28.15 Aligned_cols=52 Identities=6% Similarity=-0.105 Sum_probs=38.0
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEe-ecCccchHHHHHHHHhhcCC
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQK-AVGSHLYPIITKLYQAWLVH 70 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViL-vGGss~iP~V~~~l~~~f~~ 70 (183)
..++-.+-..+.++++|+++++ +++|||.++. +.+-...|.+.-++.+.++-
T Consensus 168 ~~~ea~~l~~~A~~~aL~kaGi-~p~dID~LVv~cS~~~~~PSlaa~V~~~LGl 220 (502)
T PLN02377 168 AREEAEQVMFGALDNLFANTNV-NPKDIGILVVNCSLFNPTPSLSAMIVNKYKL 220 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEECCCCCCCCcHHHHHHHHhCC
Confidence 3333344466778888999998 4999999876 33333579999999999953
No 140
>PRK09604 UGMP family protein; Validated
Probab=39.25 E-value=56 Score=27.48 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=38.9
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
.+...+.+..+++++|+++++ +..|||.|...-|.-..+.++--+.
T Consensus 48 ~~~H~~~l~~~i~~~L~~~~~-~~~did~iavt~GPG~~tglrvg~~ 93 (332)
T PRK09604 48 SRAHVENIVPLIEEALKEAGL-TLEDIDAIAVTAGPGLVGALLVGVS 93 (332)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCCcHHhHHHHHH
Confidence 355678899999999999998 4999999999999999999865444
No 141
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=38.47 E-value=72 Score=26.17 Aligned_cols=42 Identities=7% Similarity=-0.109 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+..+.+.++++|+++++. .+||+.+++-.++.. +.+.+.+.+
T Consensus 224 ~~~~~~~i~~~L~~~g~~-~~did~~~~h~~~~~---~~~~~~~~l 265 (325)
T PRK12879 224 VRTMPKGARQVLEKAGLT-KDDIDWVIPHQANLR---IIESLCEKL 265 (325)
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEECCCCHH---HHHHHHHHc
Confidence 455667889999999984 899999999877633 345666666
No 142
>PLN03168 chalcone synthase; Provisional
Probab=38.23 E-value=69 Score=27.59 Aligned_cols=50 Identities=14% Similarity=-0.047 Sum_probs=37.9
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
.+.-.+=..+.++++|+++++ .++|||.|+.+-.+ -.+|.+.-.|.+.++
T Consensus 98 ~~~a~~La~~Aa~~AL~~ag~-~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 98 VVQVPKLAAEAAQKAIKEWGG-RKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 333444467778899999998 49999999976432 357999999998885
No 143
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=37.37 E-value=75 Score=29.88 Aligned_cols=58 Identities=16% Similarity=0.027 Sum_probs=38.8
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCCcc--c-c----cC------CCcc-cCCchhHHhhhHHHHHHHHh
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVHQA--N-S----LV------GTKT-RHDTCEAVAYGAAVQAAILH 100 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~~~--~-~----~~------~~~~-~~~p~eaVA~GAa~~a~~l~ 100 (183)
-+-|-++|.|-.||+|.||..++...+-.. + . .. ..+. .-||..-.|.||.+.+-.+.
T Consensus 777 y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 777 YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 345688999999999999999987654210 0 0 00 0011 14899999999987665544
No 144
>PRK06840 hypothetical protein; Validated
Probab=37.19 E-value=92 Score=25.83 Aligned_cols=46 Identities=7% Similarity=-0.195 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc---chHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH---LYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss---~iP~V~~~l~~~f~ 69 (183)
.+=..+.++++|+++++ .+++||.++.++-++ ..|..-..+...++
T Consensus 54 ~~la~~Aa~~aL~~ag~-~~~dId~li~~~~~~~~~~~p~~a~~l~~~lG 102 (339)
T PRK06840 54 SDMAIAAAKPALKQAGV-DPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIG 102 (339)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEeccCCCCCCCCchHHHHHHHhC
Confidence 44467888999999998 499999998765322 36666666777775
No 145
>KOG3413|consensus
Probab=36.67 E-value=73 Score=23.80 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=28.1
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhCCC
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSNPA 39 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~ 39 (183)
..+||.+|++++.+-++...+-.+++.++...
T Consensus 40 ~~~t~~~YhrlAddTLd~L~d~fEdl~e~~~~ 71 (156)
T KOG3413|consen 40 GILTRLEYHRLADDTLDHLSDYFEDLAEEVPG 71 (156)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 46899999999999999999999999887653
No 146
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=35.91 E-value=63 Score=28.87 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=38.0
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHH
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLY 64 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l 64 (183)
..+...+.+..+++++|+++++ +..+||.|-...|....+.++--+
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~-~~~~id~iav~~gPg~~~~l~vg~ 89 (535)
T PRK09605 44 AAEHHAEAIPKVIKEALEEAGL-KPEDIDLVAFSQGPGLGPCLRVVA 89 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CHhhCCEEEECCCCCcHhhHHHHH
Confidence 3455677888999999999998 489999999999998888887443
No 147
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=35.14 E-value=87 Score=26.09 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEe-ecCccchHHHHHHHHhhcC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQK-AVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViL-vGGss~iP~V~~~l~~~f~ 69 (183)
+...++++|+++++ ++.|||.++. +..-+-.|.+-.++.+.|+
T Consensus 87 ~f~av~~LL~ktgv-~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 87 IFGAVDDLLAKTGV-KPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 46778899999998 4999998875 4455778999999999995
No 148
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=34.93 E-value=1.5e+02 Score=20.19 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=29.3
Q ss_pred EEeCCCCcCcc-eEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEe
Q psy5548 132 LIKRNTTIPTK-QTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181 (183)
Q Consensus 132 ii~~~t~lP~~-~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~ 181 (183)
.+.+++.=|.= ....|....+....+.+.||.-+.. . +..||++.+.
T Consensus 39 ~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--~-~~~iG~~~~~ 86 (118)
T cd08681 39 TDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR--K-PDLIGDTEVD 86 (118)
T ss_pred cccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--C-CcceEEEEEe
Confidence 44455555653 3445665444456788999974432 3 7789998875
No 149
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=34.83 E-value=88 Score=25.10 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHhhhhHHHhHHHHHHH-HHhhCCCCCCCCCCcEEeecCccchHHHHHHHHh
Q psy5548 15 LASAGEKPRSSTSEIVIK-WLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66 (183)
Q Consensus 15 fe~l~~~l~~~~~~~~~~-~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~ 66 (183)
-+++.+.+.+.+.+.+++ .+++ ...-.+.|.||+|-.|..+.+.+.
T Consensus 9 ~~~~~~~~a~~i~~~i~~~~~~~------~~~~~i~lsgG~tP~~~y~~L~~~ 55 (253)
T PTZ00285 9 ADAVADYTSNYIIKRINDFKPTS------DRPFVLGLPTGSTPLPTYQELIRA 55 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc------CCCeEEEEcCCCCHHHHHHHHHHH
Confidence 344555555555555555 3333 234478999999999988777654
No 150
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=34.39 E-value=2.2e+02 Score=23.13 Aligned_cols=47 Identities=11% Similarity=-0.101 Sum_probs=33.4
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
..+-..+.++++|+++++ .+++||.|++..-+ ...|.....+...++
T Consensus 48 ~~~l~~~a~~~aL~~ag~-~~~~Id~li~~~~~~~~~~~~~~~~i~~~lg 96 (324)
T cd00827 48 VPTMAVEAARRALERAGI-DPDDIGLLIVATESPIDKGKSAATYLAELLG 96 (324)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCccHHHHHHHHcC
Confidence 455577888999999998 48999998863321 225666677777775
No 151
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=34.32 E-value=88 Score=21.53 Aligned_cols=47 Identities=4% Similarity=-0.065 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcE--EeecCccchHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDK--QKAVGSHLYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~V--iLvGGss~iP~V~~~l~~~f~~ 70 (183)
...+.+-++.+|+.++.. .++|-.+ +|+.-....+.+.+...++|++
T Consensus 35 ~~~~~~ni~~~L~~aG~~-~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~ 83 (111)
T cd02198 35 FRLAFQNLGAVLEAAGCS-FDDVVELTTFHVDMAAHLPAFAAVKDEYFKE 83 (111)
T ss_pred HHHHHHHHHHHHHHcCCC-HHHEEEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 344555566677777763 6665444 4455457899999999999974
No 152
>KOG2708|consensus
Probab=33.73 E-value=1.8e+02 Score=23.73 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=46.8
Q ss_pred eecHHHHH-HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCch
Q psy5548 9 KAERQDLA-SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTC 85 (183)
Q Consensus 9 ~itR~~fe-~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~ 85 (183)
+.|.+++- .|-+.++.-..++.++++.-++ -+.|++|||-.+--.+|++...+..+. ++. . -|-.
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~------s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-a-----TDeR 291 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG------SKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-A-----TDER 291 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCcEEEEecccccHHHHHHHHHHHHhcCCceE-e-----cccc
Confidence 34555432 2223356667777777776554 247999999999999999999877432 222 2 3445
Q ss_pred hHHhhhHHH
Q psy5548 86 EAVAYGAAV 94 (183)
Q Consensus 86 eaVA~GAa~ 94 (183)
-++.-|+.+
T Consensus 292 fCIDNG~MI 300 (336)
T KOG2708|consen 292 FCIDNGVMI 300 (336)
T ss_pred eeeeCchHH
Confidence 566666654
No 153
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=33.46 E-value=59 Score=24.45 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCCCCcEEeecCccch-----H---HHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 42 EGRFEDKQKAVGSHLY-----P---IITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 42 ~~~i~~ViLvGGss~i-----P---~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.+++|.|++.||.... | .+.+.++..... --|--++..|+-+.+..+.+
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~pilgiC~G~q~l~~~lGG 100 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA-----------GKPVLGICLGHQLLARALGG 100 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC-----------CCCEEEECccHHHHHHHhCC
Confidence 5789999999997643 3 334444444321 12344577888777776654
No 154
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=33.31 E-value=63 Score=24.31 Aligned_cols=48 Identities=13% Similarity=-0.053 Sum_probs=30.3
Q ss_pred CCCCcEEeecCccc---hHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 43 GRFEDKQKAVGSHL---YPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 43 ~~i~~ViLvGGss~---iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.+.|.|++.||... .....+.++..+... -|--.+.+|.-+.+..+.+
T Consensus 38 ~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~-----------~PvlGIC~G~Q~l~~~~Gg 88 (178)
T cd01744 38 LDPDGIFLSNGPGDPALLDEAIKTVRKLLGKK-----------IPIFGICLGHQLLALALGA 88 (178)
T ss_pred cCCCEEEECCCCCChhHhHHHHHHHHHHHhCC-----------CCEEEECHHHHHHHHHcCC
Confidence 46889999999643 344555555555321 2344577888877776655
No 155
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=33.10 E-value=1.3e+02 Score=24.89 Aligned_cols=47 Identities=11% Similarity=-0.154 Sum_probs=35.4
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~ 70 (183)
.+=..+.++++|+++++ .+++||.|+.+..+ ...|.....+...++-
T Consensus 62 ~~la~~Aa~~aL~~ag~-~~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl 110 (338)
T PRK09258 62 SDGAIAAGRKALAEAGI-DPSDIGLLINTSVCRDYLEPATACRVHHNLGL 110 (338)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCChHHHHHHHHcCC
Confidence 34467788899999998 48999998865432 4568888888888853
No 156
>PRK13690 hypothetical protein; Provisional
Probab=32.95 E-value=75 Score=24.53 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=25.7
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL 56 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~ 56 (183)
..+-+.+...+.++++.+++. +. .++.+|.||.
T Consensus 4 ~~i~~~~~~~~~El~~~a~l~-~g---~i~VvGcSTS 36 (184)
T PRK13690 4 EEIKKQTRQILEELLEQANLK-PG---QIFVLGCSTS 36 (184)
T ss_pred HHHHHHHHHHHHHHHHhhCCC-CC---CEEEEecchH
Confidence 346677888999999999874 44 6788898875
No 157
>KOG0870|consensus
Probab=32.46 E-value=55 Score=24.89 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=27.8
Q ss_pred HHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHh
Q psy5548 59 IITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILH 100 (183)
Q Consensus 59 ~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~ 100 (183)
.|.+.+++.++...+..+ -+...|++++|+++...++
T Consensus 15 iI~rlvke~l~E~~vsis-----KeA~~Ai~raAtVFv~~Lt 51 (172)
T KOG0870|consen 15 IITRLVKEVLPESNVSIS-----KEARLAIARAATVFVIFLT 51 (172)
T ss_pred HHHHHHHHhCcccccccc-----HHHHHHHHHHHHHHHHHHH
Confidence 466777777776645555 5778899999999987775
No 158
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=32.42 E-value=40 Score=27.25 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=22.9
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhh
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~ 67 (183)
+.+.+.+++.+++++.+. -++|||+.. +++..|..+
T Consensus 41 f~~~a~~~i~~i~~rgk~--------PIlvGGTgl--Yi~all~g~ 76 (253)
T PF01715_consen 41 FQRDAREAIEDILARGKI--------PILVGGTGL--YIQALLNGL 76 (253)
T ss_dssp HHHHHHHHHHHHHHTT-E--------EEEEES-HH--HHHHHHCTS
T ss_pred HHHHHHHHHHHHHhcCCe--------EEEECChHH--HHHHHHhCh
Confidence 455566677777776553 389999986 676666443
No 159
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=32.08 E-value=74 Score=21.66 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=16.8
Q ss_pred cccCCc-eeecHHHHHHhhhhHH
Q psy5548 2 KSYNGR-RKAERQDLASAGEKPR 23 (183)
Q Consensus 2 ~~~~~~-~~itR~~fe~l~~~l~ 23 (183)
|.|.|+ .+++|.||.+++..-+
T Consensus 15 hkYaG~~~tLsk~Elk~Ll~~El 37 (91)
T cd05024 15 HKFAGEKNYLNRDDLQKLMEKEF 37 (91)
T ss_pred HHHcCCCCcCCHHHHHHHHHHHh
Confidence 567764 5899999999987643
No 160
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=32.04 E-value=1.3e+02 Score=24.70 Aligned_cols=45 Identities=18% Similarity=0.051 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc--chHHHHHHHHhhcC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH--LYPIITKLYQAWLV 69 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~ 69 (183)
+=..+.++++|+++++ .+++||.++.+.++. .+|.....+...++
T Consensus 54 ~la~~Aa~~aL~~ag~-~~~dId~li~~~~~~~~~~p~~a~~v~~~lg 100 (329)
T PRK07204 54 YMGAEAAKKAVEDAKL-TLDDIDCIICASGTIQQAIPCTASLIQEQLG 100 (329)
T ss_pred HHHHHHHHHHHHHcCC-CHHHCCEEEEECCCCCCCCccHHHHHHHHhC
Confidence 3356778889999998 489999987664332 46887788888775
No 161
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=32.04 E-value=88 Score=18.84 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=24.9
Q ss_pred CCceeecHHHHHHhhhhHH-----HhHHHHHHHHHhhCC
Q psy5548 5 NGRRKAERQDLASAGEKPR-----SSTSEIVIKWLDSNP 38 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~-----~~~~~~~~~~l~~~~ 38 (183)
|+...|++++|..++..+. ..+.+.+..+++...
T Consensus 12 d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D 50 (66)
T PF13499_consen 12 DGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFD 50 (66)
T ss_dssp TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHT
T ss_pred CccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 5678999999999999975 345556666666543
No 162
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.84 E-value=84 Score=25.92 Aligned_cols=43 Identities=12% Similarity=-0.100 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
...+.+.++++|+++++. .+||+.+++-.++.++ .+.+.+.++
T Consensus 229 ~~~~~~~i~~~L~~~gl~-~~did~~~~H~~~~~~---~~~i~~~l~ 271 (329)
T PRK07204 229 SKYLMKFIDKLLMDAGYT-LADIDLIVPHQASGPA---MRLIRKKLG 271 (329)
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEeCCCCHHH---HHHHHHHcC
Confidence 334667889999999984 9999999998887654 346666663
No 163
>PLN02192 3-ketoacyl-CoA synthase
Probab=31.57 E-value=95 Score=28.01 Aligned_cols=52 Identities=10% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc--chHHHHHHHHhhcC
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH--LYPIITKLYQAWLV 69 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~ 69 (183)
++..+.--.-....++++|+++++ +++|||.|+.. .|. -.|.+.-++.+.++
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi-~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSV-KPKDIGILIVN-CSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEE-CCCCCCCchHHHHHHHHhC
Confidence 333333334456778899999998 49999988765 444 37999999999995
No 164
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=31.09 E-value=27 Score=25.14 Aligned_cols=54 Identities=4% Similarity=0.035 Sum_probs=36.1
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhh-------------CCCCCCCCCCcEEeecCccchHHHH
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDS-------------NPAGREGRFEDKQKAVGSHLYPIIT 61 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~-------------~~~~~~~~i~~ViLvGGss~iP~V~ 61 (183)
.-++|...|++.-+-+....+.++++++. .+..+.+-++.|-++||++.+-.+.
T Consensus 46 ~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~s~~~~~~~ed~l~egvkI~G~~tF~~l~~ 112 (120)
T COG2044 46 TLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVCEQSLKLRGIKEDDLVEGVKIVGAATFLLLAS 112 (120)
T ss_pred eeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEEcchhhhcCcchhhhhhccEeccHHHHHHHHh
Confidence 45778888888877666667777777664 2222234457888899888766553
No 165
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=31.06 E-value=1.2e+02 Score=26.21 Aligned_cols=28 Identities=0% Similarity=0.016 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEee
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKA 51 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLv 51 (183)
.+-..+.++++|+++++ ++++||.|++.
T Consensus 32 ~eL~~~a~~~aL~~Agi-~~~dID~vi~G 59 (397)
T PRK06954 32 PQLGAAAIAAAVERAGL-KPEQIDEVVMG 59 (397)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHcCEEEEE
Confidence 34457788899999998 59999998863
No 166
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.98 E-value=1.4e+02 Score=25.15 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCC
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVH 70 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~ 70 (183)
-....++++|+++++ .+++||.|+....+ ..+|...-.+...++-
T Consensus 98 la~~Aa~~aL~~agl-~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl 144 (372)
T PRK07515 98 MGVAAARQALARAGR-TAEDIDAVIVACSNMQRAYPAMAIEIQQALGI 144 (372)
T ss_pred HHHHHHHHHHHHcCC-CHHHCCEEEEECCCCCCCCcHHHHHHHHhcCC
Confidence 355678888999998 48899988764332 3467777777777753
No 167
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=30.94 E-value=57 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=23.2
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEee
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKA 51 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLv 51 (183)
.+.+.+.+++.+.++.+++. ++||-.|++.
T Consensus 17 ~I~~at~eLl~~i~~~N~l~-~~dIvSi~FT 46 (118)
T PF07736_consen 17 EILEATRELLEEILERNELS-PEDIVSIIFT 46 (118)
T ss_dssp HHHHHHHHHHHHHHHHTT---GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHEEEEEEE
Confidence 46778999999999999984 8888887753
No 168
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=30.40 E-value=49 Score=23.81 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=16.6
Q ss_pred CcEEeecCccchHHHHHHHHhhc
Q psy5548 46 EDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 46 ~~ViLvGGss~iP~V~~~l~~~f 68 (183)
+.|+||+|.+.|..+--.|.+++
T Consensus 2 ~~vvlvAGG~GIt~~l~~l~~l~ 24 (156)
T PF08030_consen 2 DNVVLVAGGSGITPILPILRDLL 24 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHH
T ss_pred CEEEEEecCcCHHHHHHHHHHHH
Confidence 57888888887776666666654
No 169
>PLN02854 3-ketoacyl-CoA synthase
Probab=30.39 E-value=75 Score=28.74 Aligned_cols=43 Identities=2% Similarity=-0.133 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEe-ecCccchHHHHHHHHhhcC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQK-AVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViL-vGGss~iP~V~~~l~~~f~ 69 (183)
+...++++|+++++ +++|||.|+. +.+-...|.+.-++.+.++
T Consensus 192 ~~~~~~~lL~kaGi-~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 192 MFGALDSLFSKTGV-KPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 45567788999998 4999999986 2233347999999999985
No 170
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=30.35 E-value=57 Score=27.77 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=32.2
Q ss_pred CCCCCcEEeecCccch-HHHHHHHH---hhcCC--cccccCCCcccCCchhHHhhhHHHH
Q psy5548 42 EGRFEDKQKAVGSHLY-PIITKLYQ---AWLVH--QANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 42 ~~~i~~ViLvGGss~i-P~V~~~l~---~~f~~--~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
...+..|+++|...+. |...+.|. +++.. .+...- -+..-+-|.||.+.
T Consensus 285 ~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl-----~h~gy~galGa~l~ 339 (341)
T PF03630_consen 285 IHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFL-----RHEGYLGALGAFLK 339 (341)
T ss_dssp HHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEE-----TTTTSHHHHHHHHT
T ss_pred HcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEe-----cCCchhHHHHHHHh
Confidence 4568899999998865 77778887 55532 233333 46677899999874
No 171
>smart00555 GIT Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins. Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins, and in yeast Spa2p and Sph1p (CPP; unpublished results). In p95-APP1 the N-terminal GIT motif might be involved in binding PIX.
Probab=30.21 E-value=61 Score=17.41 Aligned_cols=20 Identities=0% Similarity=-0.021 Sum_probs=15.1
Q ss_pred eecHHHHHHhhhhHHHhHHH
Q psy5548 9 KAERQDLASAGEKPRSSTSE 28 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~~~~ 28 (183)
.++..+|.+++.|++.++..
T Consensus 7 ~L~~~~F~~L~~Dv~~El~R 26 (31)
T smart00555 7 RLSDEQFQKLLTDLNDELKR 26 (31)
T ss_pred hcCHHHHHHHHHHHHHHHHH
Confidence 46778888888888776643
No 172
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=29.90 E-value=2.2e+02 Score=23.21 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCCCccccceeEEEee-cceeeeEEEeCCEEEEE
Q psy5548 54 SHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGDKSEEVQDLLLLDV-TPLSLGIETAGGVMTAL 132 (183)
Q Consensus 54 ss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~-~~~~igi~~~~g~~~~i 132 (183)
-|||..|++.+...-... .. -|.--|...||...... +. ...+.++|+ .+|+++..+.+++..=|
T Consensus 127 ~TRm~av~~~~~~~~~~~---~v-----mDTg~AAvlGal~d~~v-~~-----~~~~~~vniGN~HTlaa~v~~~rI~Gv 192 (254)
T PF08735_consen 127 FTRMRAVRESLGGAGYDE---VV-----MDTGPAAVLGALCDPEV-SS-----REGIIVVNIGNGHTLAALVKDGRIYGV 192 (254)
T ss_pred HHHHHHHHHHhccCCCCc---eE-----ecCHHHHHhhhhcChhh-hc-----cCCeEEEEeCCccEEEEEEeCCEEEEE
Confidence 466666666665442111 11 34455566676654443 21 245567776 78999999999998888
Q ss_pred EeCCCCcCc
Q psy5548 133 IKRNTTIPT 141 (183)
Q Consensus 133 i~~~t~lP~ 141 (183)
++-.|..=.
T Consensus 193 fEHHT~~l~ 201 (254)
T PF08735_consen 193 FEHHTGMLT 201 (254)
T ss_pred EecccCCCC
Confidence 887776633
No 173
>COG5418 Predicted secreted protein [Function unknown]
Probab=29.39 E-value=1e+02 Score=23.10 Aligned_cols=42 Identities=5% Similarity=-0.028 Sum_probs=30.1
Q ss_pred ceeecHHHHHH-hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeec
Q psy5548 7 RRKAERQDLAS-AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAV 52 (183)
Q Consensus 7 ~~~itR~~fe~-l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvG 52 (183)
|..+||++|+. -.+.+.+++.+++-++|++.+ ++.+ .++++|
T Consensus 62 R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k---~d~~-kii~IG 104 (164)
T COG5418 62 RPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK---PDGI-KIIFIG 104 (164)
T ss_pred CCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC---cCCc-eEEEEe
Confidence 56899999986 466788888888888888753 3333 456666
No 174
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=29.26 E-value=85 Score=24.22 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=39.5
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
..-+..-+.+...++++|+++++ +..|||.|...=|......+|--+.
T Consensus 28 ~~~~~h~~~l~~~i~~~l~~~~~-~~~~i~~iav~~GPGSfTGlRig~~ 75 (202)
T TIGR03725 28 EAGRNHSEILLPMIEELLAEAGL-SLQDLDAIAVGVGPGSFTGLRIGLA 75 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEecCCChHHhHHHHHH
Confidence 34456778889999999999998 4999999999999888888875554
No 175
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=29.18 E-value=88 Score=26.88 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCCc
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVHQ 71 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~~ 71 (183)
.....++++|+++++. ++||++|..-|-+|.. +.=.+.|++.|+..
T Consensus 255 ~~~~ai~~Al~~agi~-p~dId~i~~hgtgt~~~D~~E~~al~~~fg~~ 302 (381)
T PRK05952 255 SAIAAIQQCLARSGLT-PEDIDYIHAHGTATRLNDQREANLIQALFPHR 302 (381)
T ss_pred HHHHHHHHHHHHhCCC-HHHeeEEEccCCCCCCCcHHHHHHHHHHcCCC
Confidence 4567889999999984 8999999998877765 56567888889643
No 176
>PLN03169 chalcone synthase family protein; Provisional
Probab=29.14 E-value=1.1e+02 Score=26.21 Aligned_cols=47 Identities=9% Similarity=-0.119 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
..+=..+.++++|+++++ .+++||.|+.+--+ ..+|...-.|.+.++
T Consensus 106 ~~~La~~Aa~~aL~~ag~-~~~dId~lI~~t~t~~~~P~~a~~l~~~LG 153 (391)
T PLN03169 106 VTQMAVEASLACIKEWGR-PVSDITHLVYVSSSEARLPGGDLYLAKQLG 153 (391)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHCCEEEEECcCCCCCCcHHHHHHHHhC
Confidence 344467778889999998 49999999876431 267888888888775
No 177
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=28.81 E-value=1.3e+02 Score=25.88 Aligned_cols=47 Identities=11% Similarity=-0.114 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc----cchHHHHHHHHhhcCC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS----HLYPIITKLYQAWLVH 70 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs----s~iP~V~~~l~~~f~~ 70 (183)
..+-..+.++++|+++++ ++.|||.+++ |.. ...|.+...+....+.
T Consensus 29 ~~~L~~~A~~~Al~dagl-~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~ 79 (392)
T PRK06065 29 PQELAWEAASKALDEAGL-ELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGG 79 (392)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEE-eccCCcccccccHHHHHHHHcCC
Confidence 344466788999999998 5999999886 321 1245566777777654
No 178
>PLN02360 probable 6-phosphogluconolactonase
Probab=28.62 E-value=1.3e+02 Score=24.50 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHH
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLY 64 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l 64 (183)
+-+++.+.+.+.+.+.++..+++.+ .-.+-|.|||+ .+..++..
T Consensus 18 ~~~el~~~~a~~i~~~~~~a~~~~~------~~~lalsGGS~-~~~~~~L~ 61 (268)
T PLN02360 18 NLDELSTDLAEYIAELSEASVKERG------VFAIALSGGSL-ISFMGKLC 61 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC------cEEEEECCCCH-HHHHHHHh
Confidence 4455666666666666666666543 23577799986 45555543
No 179
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.50 E-value=63 Score=27.36 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=37.2
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~ 70 (183)
.+=..+.++++|+++++ +++|||.|+++.-+ -.+|...-.|.+.++-
T Consensus 61 ~~la~~Aa~~aL~~a~~-~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~ 109 (353)
T PRK12880 61 SDLGKHAANTLLQGLNI-DKNSLDALIVVTQSPDFFMPSTACYLHQLLNL 109 (353)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCC
Confidence 33467888999999998 49999999866554 3689999999998853
No 180
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.44 E-value=97 Score=25.63 Aligned_cols=59 Identities=7% Similarity=-0.094 Sum_probs=39.5
Q ss_pred ceeecHHHHHHhhhhHHHhHHHH------HHHHHhh---C-CCCCCCCCCcEEeecC--ccchHHHHHHHHhh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEI------VIKWLDS---N-PAGREGRFEDKQKAVG--SHLYPIITKLYQAW 67 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~------~~~~l~~---~-~~~~~~~i~~ViLvGG--ss~iP~V~~~l~~~ 67 (183)
++++++++|+++++-+..+..++ +..+-++ + .+ ...+|.++.||| ||+--.+.+.-++.
T Consensus 164 QTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~L--a~~vD~miVVGg~~SsNT~rL~eia~~~ 234 (281)
T PRK12360 164 QTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKEL--SKEVDVMIVIGGKHSSNTQKLVKICEKN 234 (281)
T ss_pred CCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHH--HHhCCEEEEecCCCCccHHHHHHHHHHH
Confidence 67999999999999887664333 2222111 1 12 356899999999 67777777766655
No 181
>PLN03171 chalcone synthase-like protein; Provisional
Probab=27.39 E-value=1.3e+02 Score=26.01 Aligned_cols=49 Identities=10% Similarity=-0.088 Sum_probs=36.5
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcCC
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLVH 70 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~~ 70 (183)
...+=..+.++++|+++++ ++++||.|+.+-.+ -.+|...-.+.+.++-
T Consensus 107 ~a~~la~~Aa~~aL~~ag~-~~~dId~li~~t~t~~~~P~~a~~v~~~LGl 156 (399)
T PLN03171 107 AVPELAAEAAKKAIAEWGR-PAADITHLVVTTNSGAHIPGVDFRLVPLLGL 156 (399)
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCchHHHHHHHhCC
Confidence 3444577788999999998 59999999983221 1378888888888853
No 182
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.03 E-value=70 Score=27.77 Aligned_cols=60 Identities=8% Similarity=-0.042 Sum_probs=38.8
Q ss_pred ceeecHHHHHHhhhhHHHhH----------------HHHHHHHHhh----CCCCCCCCCCcEEeecC--ccchHHHHHHH
Q psy5548 7 RRKAERQDLASAGEKPRSST----------------SEIVIKWLDS----NPAGREGRFEDKQKAVG--SHLYPIITKLY 64 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~----------------~~~~~~~l~~----~~~~~~~~i~~ViLvGG--ss~iP~V~~~l 64 (183)
++++++++|+++++-+..++ -.++..+-++ ..+. ...+|.++.||| ||+--.+.+.-
T Consensus 232 QTT~~~~~~~~iv~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La-~~~vD~miVVGG~nSSNT~rL~eia 310 (387)
T PRK13371 232 QTTMLKSETEEIGKLFERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLV-EEPLDLMVVIGGYNSSNTTHLQEIA 310 (387)
T ss_pred CCCCcHHHHHHHHHHHHHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHh-hcCCCEEEEECCCCCccHHHHHHHH
Confidence 57999999999988775421 1233333221 1121 246999999999 67777777766
Q ss_pred Hhh
Q psy5548 65 QAW 67 (183)
Q Consensus 65 ~~~ 67 (183)
++.
T Consensus 311 ~~~ 313 (387)
T PRK13371 311 IER 313 (387)
T ss_pred Hhc
Confidence 654
No 183
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=26.96 E-value=1.9e+02 Score=24.47 Aligned_cols=49 Identities=22% Similarity=0.153 Sum_probs=39.8
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCCc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVHQ 71 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~~ 71 (183)
..+-..+.++++|+++++ +++|||-|++.-=+ ..+|..--.+++.++-.
T Consensus 52 ~s~la~~Aa~~AL~~Agi-~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~ 102 (323)
T COG0332 52 TSDLAVEAARKALEDAGI-SPDDIDLIIVATSTPDHLFPSTACLVQARLGLG 102 (323)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCcccCCChHHHHHHHHhCCC
Confidence 345577889999999998 49999999987655 45699999999999643
No 184
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=26.85 E-value=2.2e+02 Score=23.15 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc--chHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH--LYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~~ 70 (183)
.+-..+.++++|+++++ .+++||.++....+. ..|.....+...++-
T Consensus 52 ~~la~~A~~~al~~agl-~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lGl 100 (318)
T TIGR00747 52 STMGFEAAKRAIENAGI-SKDDIDLIIVATTTPDHAFPSAACMVQAYLGI 100 (318)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEECCCCCCCCChHHHHHHHHhCC
Confidence 33367888999999998 489999888654322 356666777777753
No 185
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=26.75 E-value=96 Score=25.75 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=37.8
Q ss_pred cEEeecCccchHHHHHHHHhhcCCcc-c-ccCCCcccCCchhH--------HhhhHHHHHHHHhCCCccccceeEEEeec
Q psy5548 47 DKQKAVGSHLYPIITKLYQAWLVHQA-N-SLVGTKTRHDTCEA--------VAYGAAVQAAILHGDKSEEVQDLLLLDVT 116 (183)
Q Consensus 47 ~ViLvGGss~iP~V~~~l~~~f~~~~-~-~~~~~~~~~~p~ea--------VA~GAa~~a~~l~~~~~~~~~~~~~~d~~ 116 (183)
.++|-=+...+--.+..|+++|+... - ... .+++|+ +|-|||+.-..+... .+.|++
T Consensus 114 HLilkm~~~gi~ea~~~L~~~f~~~~~G~~fe-----Ct~~E~~~A~LhRFaaAgAaiRY~avh~~--------~vediv 180 (291)
T PF09330_consen 114 HLILKMSGDGIEEARAYLKEFFAKAEDGDFFE-----CTPEEGKKAFLHRFAAAGAAIRYRAVHRK--------EVEDIV 180 (291)
T ss_dssp EEEEEE-TTHHHHHHHHHHHHCCCSS--EEEE-------HHHHHHHHHHHTTHHHHHHHHHHHTCC--------CEECEE
T ss_pred heeeeecCCcHHHHHHHHHHHhcccCCCceEe-----eCHHHHHHHHHHHHHhhhhhHHHHHhccc--------ccccee
Confidence 34443344458899999999997543 1 123 677775 456777755554443 244566
Q ss_pred ceeeeEEEeCCEEE
Q psy5548 117 PLSLGIETAGGVMT 130 (183)
Q Consensus 117 ~~~igi~~~~g~~~ 130 (183)
+..|.+.-++..+.
T Consensus 181 aLDiALrRNd~dW~ 194 (291)
T PF09330_consen 181 ALDIALRRNDRDWF 194 (291)
T ss_dssp EEEEE-BTT-S--S
T ss_pred eeeeeecCCchhhh
Confidence 66666554444443
No 186
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=26.67 E-value=63 Score=28.27 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=39.1
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
.+++|-+-+++.+.+++.+++++++. .+++|..+.++|=++..-.+...=-+.+
T Consensus 54 ~~~~L~~~i~~~i~~li~~l~~~~gi-~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 54 GLEELQRLIRETINELIEELLEKAGI-SPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 36777777888899999999999997 4999999999998887766655433433
No 187
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=26.64 E-value=1.2e+02 Score=24.39 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=19.9
Q ss_pred CCcEEeecCccchHHHHHHHHhh
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~~~ 67 (183)
--.+-|.||||-++..+.+++..
T Consensus 33 ~~~l~LsgGsTP~~~ye~L~~~~ 55 (238)
T COG0363 33 RAVLALSGGSTPLALYEALVKLP 55 (238)
T ss_pred cEEEEECCCCCHHHHHHHHHhhh
Confidence 44788999999999999998865
No 188
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.27 E-value=2e+02 Score=23.53 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
.+-..+.++++|+++++ .+++||.|+.+..+ ...|.....+.+.++
T Consensus 54 ~~la~~A~~~al~~ag~-~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg 101 (325)
T PRK12879 54 SDLAIKAAERALARAGL-DAEDIDLIIVATTTPDYLFPSTASQVQARLG 101 (325)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCChHHHHHHHHhC
Confidence 34467888899999998 48999998865432 356877788888885
No 189
>KOG0677|consensus
Probab=26.16 E-value=32 Score=28.46 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=37.1
Q ss_pred eecHHHHH---HhhhhH-HH----hHHHHHHHHHhhCCCCCC-CCCCcEEeecCccchHHHHHHHHhh
Q psy5548 9 KAERQDLA---SAGEKP-RS----STSEIVIKWLDSNPAGRE-GRFEDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 9 ~itR~~fe---~l~~~l-~~----~~~~~~~~~l~~~~~~~~-~~i~~ViLvGGss~iP~V~~~l~~~ 67 (183)
++--++|| .+-+|. ++ -..+++-++++.+.+... +--.+|+|.||||..|.+-..|++.
T Consensus 250 kvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 250 KVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred EecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 55566664 344552 21 256667777776654211 2235899999999999887777653
No 190
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=25.89 E-value=64 Score=16.57 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=13.2
Q ss_pred CCceeecHHHHHHhhh
Q psy5548 5 NGRRKAERQDLASAGE 20 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~ 20 (183)
+++..|+.+||..+++
T Consensus 12 d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 12 DGDGFIDFEELRAILR 27 (31)
T ss_dssp TSSSEEEHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHH
Confidence 4567999999998876
No 191
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=25.87 E-value=1e+02 Score=26.33 Aligned_cols=45 Identities=4% Similarity=-0.138 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCCc
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVHQ 71 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~~ 71 (183)
..+.++++|+++++. ++|||.|.+-|-+|.. +.=...|.+.|+..
T Consensus 262 ~~~a~~~Al~~Agl~-~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~ 308 (392)
T PRK09185 262 AILAMQQALADAGLA-PADIGYINLHGTATPLNDAMESRAVAAVFGDG 308 (392)
T ss_pred HHHHHHHHHHHcCCC-HHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC
Confidence 457889999999984 9999999999988764 55557788888643
No 192
>PRK06840 hypothetical protein; Validated
Probab=25.82 E-value=1.9e+02 Score=23.98 Aligned_cols=41 Identities=5% Similarity=-0.158 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
..+.+.++++|+++++. .+||+.+++.-++. .+-+.+.+.+
T Consensus 237 ~~~~~~i~~~L~~~gl~-~~did~~~~h~~~~---~~~~~~~~~L 277 (339)
T PRK06840 237 PNFLKVIREALRKSGYT-PKDIDYLAILHMKR---SAHIALLEGL 277 (339)
T ss_pred HHHHHHHHHHHHHcCCC-HHHCCEEEECCcCH---HHHHHHHHHc
Confidence 34668899999999984 99999998866652 2334555555
No 193
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=25.67 E-value=2.4e+02 Score=20.59 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=29.9
Q ss_pred EEEeCCCCc-C-cceEEEEEcccCC-CccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 131 ALIKRNTTI-P-TKQTQTFTTYSDN-QPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 131 ~ii~~~t~l-P-~~~~~~~~~~~d~-q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
.=+.+++.. | ...+..|....+. +-.+.+.+| +......|..||.+.|..
T Consensus 55 T~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~--d~~~~~~n~~IG~v~lG~ 107 (135)
T cd08692 55 TRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY--SRSSVRRKHFLGQVWISS 107 (135)
T ss_pred CccEECCCCCceecceEEEeCCchhheeEEEEEEE--eCCCCcCCceEEEEEECC
Confidence 345566655 5 4556666654432 234445555 445567889999998864
No 194
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.46 E-value=70 Score=21.51 Aligned_cols=24 Identities=4% Similarity=-0.082 Sum_probs=18.4
Q ss_pred cEEeecC-ccchHHHHHHHHhhcCCc
Q psy5548 47 DKQKAVG-SHLYPIITKLYQAWLVHQ 71 (183)
Q Consensus 47 ~ViLvGG-ss~iP~V~~~l~~~f~~~ 71 (183)
.|++||| ..+.+.+++.+++ ++.+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~-~G~~ 25 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEK-YGGK 25 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHH-cCCE
Confidence 3789999 7788888888887 4444
No 195
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=25.42 E-value=2e+02 Score=24.58 Aligned_cols=27 Identities=4% Similarity=-0.039 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEe
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQK 50 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViL 50 (183)
.+=..+.++++|+++++ ++++||.|++
T Consensus 27 ~~L~~~a~~~al~dagi-~~~dID~vi~ 53 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKL-DPALVQEVIM 53 (388)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEE
Confidence 44467788889999998 4999999986
No 196
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=25.31 E-value=1.1e+02 Score=25.86 Aligned_cols=47 Identities=4% Similarity=-0.152 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~ 70 (183)
-......++++|+++++ +++||++|..-|=+|.. +.=.+.|++.|+.
T Consensus 205 ~~~~~~ai~~AL~~Agl-~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 205 GDGAYRAMKIALRQAGI-TPEQVQHLNAHATSTPVGDLGEINAIKHLFGE 253 (342)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEecCCCCcCCCHHHHHHHHHHhCC
Confidence 44567789999999998 49999999999877776 6667888889964
No 197
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=25.28 E-value=1.9e+02 Score=22.40 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=34.8
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEee----c--CccchHHHHHHHHhhcCCcc
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKA----V--GSHLYPIITKLYQAWLVHQA 72 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLv----G--Gss~iP~V~~~l~~~f~~~~ 72 (183)
....+++.+.+++.++.+ +.++.++++ | ||.-.|.|-+.+++.|++..
T Consensus 104 ~~~~~~~~~~ir~~~e~~-----d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~ 157 (216)
T PF00091_consen 104 EEALEEILEQIRKEIEKC-----DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKP 157 (216)
T ss_dssp HHHHHHHHHHHHHHHHTS-----TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSE
T ss_pred cccccccccccchhhccc-----cccccceecccccceeccccccccchhhhccccccc
Confidence 446667777777777654 457778763 3 46678999999999997653
No 198
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=25.08 E-value=2.3e+02 Score=23.02 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc--chHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH--LYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~~ 70 (183)
.+-..+.++++|+++++ .+++||.|+...++. ..|.....+...++-
T Consensus 53 ~~la~~A~~~al~~agl-~~~~id~vi~~~~~~~~~~~~~~~~i~~~lG~ 101 (319)
T PRK09352 53 SDLATEAAKKALEAAGI-DPEDIDLIIVATTTPDYAFPSTACLVQARLGA 101 (319)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCchHHHHHHHHhCC
Confidence 34467888999999998 489999988644321 267676778887753
No 199
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=1.8e+02 Score=26.45 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=44.8
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHH-HHHHhhcCCcccccCCCcccCCchhHHhhh
Q psy5548 13 QDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIIT-KLYQAWLVHQANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 13 ~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~-~~l~~~f~~~~~~~~~~~~~~~p~eaVA~G 91 (183)
.+|...++-.++++.--+.+.+.+.. ..+.+.+.||-..-=..- +.+.+-+.. .+... + ---|.-.|.|
T Consensus 259 ~diAasaQ~~lE~l~l~~~~~~~~~~-----g~~~L~~AGGVAlNv~~N~~~l~~~~f~-dlfV~---P-a~gD~G~AvG 328 (555)
T COG2192 259 ADIAASAQAYLEELVLEMLRYLREET-----GEDNLALAGGVALNVKANGKLLRRGLFE-DLFVQ---P-AMGDAGLAVG 328 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----CccceEEccceeeeeeehHhHhhcccCc-eeEec---C-CCCCcchHHH
Confidence 34444555555555444444444321 266899999988765555 555544422 22111 0 1227789999
Q ss_pred HHHHHHHHhC
Q psy5548 92 AAVQAAILHG 101 (183)
Q Consensus 92 Aa~~a~~l~~ 101 (183)
||+++....+
T Consensus 329 AAl~~~~~~~ 338 (555)
T COG2192 329 AALAVKRELG 338 (555)
T ss_pred HHHHHHHHhc
Confidence 9999875443
No 200
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=24.99 E-value=2.7e+02 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEe
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQK 50 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViL 50 (183)
..+-..+.++++|+++++ ++++||.|++
T Consensus 26 ~~~L~~~a~~~al~dagl-~~~~ID~vv~ 53 (382)
T PRK07801 26 PADLGAHVLKGLVDRTGI-DPAAVDDVIF 53 (382)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHcCEEEE
Confidence 345567788889999998 4899999986
No 201
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=24.77 E-value=85 Score=25.63 Aligned_cols=43 Identities=7% Similarity=-0.070 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
....+.+.++++|+++++ +.+||+.+++-.++.+ +.+.+.+.+
T Consensus 217 ~~~~~~~~i~~~l~~~g~-~~~di~~~~~h~~~~~---~~~~~~~~l 259 (319)
T PRK09352 217 AVRELAKVAREALEAAGL-TPEDIDWLVPHQANLR---IIDATAKKL 259 (319)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEECCCCHH---HHHHHHHHh
Confidence 345567789999999998 4899999999766543 334555555
No 202
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=24.64 E-value=82 Score=26.06 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=31.6
Q ss_pred CCceeecHHHHHHhhhhHHHhHH-HHHHHHH--hhCCCCCCCCCCcEEeecCccch
Q psy5548 5 NGRRKAERQDLASAGEKPRSSTS-EIVIKWL--DSNPAGREGRFEDKQKAVGSHLY 57 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~~~~~-~~~~~~l--~~~~~~~~~~i~~ViLvGGss~i 57 (183)
+|..-||++++-+..+.++++.- +..++.+ ..- .+-.-..|+|+||.|.+
T Consensus 48 ~~~~~v~~~eir~~~~~l~~k~~~e~a~rY~lwR~i---r~~~~p~IILIGGasGV 100 (299)
T COG2074 48 EGIRLVTKDEIREVYQKLLEKGDPEVAKRYLLWRRI---RKMKRPLIILIGGASGV 100 (299)
T ss_pred CCCeEeeHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hccCCCeEEEecCCCCC
Confidence 45678999999888888877733 2223222 221 12334589999998865
No 203
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=24.56 E-value=1e+02 Score=26.84 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=28.5
Q ss_pred HhhhhHHHh-HHHHHHHHHhhCCCCCCCCCCcEEeecCccc
Q psy5548 17 SAGEKPRSS-TSEIVIKWLDSNPAGREGRFEDKQKAVGSHL 56 (183)
Q Consensus 17 ~l~~~l~~~-~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~ 56 (183)
.+|..+.+. ...+++..|++.+..--..+|.++||||.|.
T Consensus 32 tIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~ 72 (396)
T PF01941_consen 32 TICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSE 72 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEe
Confidence 455555555 3456667788877533578999999999987
No 204
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=24.50 E-value=70 Score=22.90 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=28.5
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEe
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQK 50 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViL 50 (183)
|-+++++.+=| .+.+.+.+++.+.++++++. ++||-.|++
T Consensus 6 GAtTv~~nt~e----~I~~at~eLl~~i~~~N~l~-~edivSv~F 45 (117)
T cd02185 6 GATTVEENTAE----EILEATRELLEEIIERNNIK-PEDIISVIF 45 (117)
T ss_pred CceecCCCCHH----HHHHHHHHHHHHHHHHcCCC-HHHEEEEEE
Confidence 44555554433 45678899999999999984 777777764
No 205
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=24.47 E-value=54 Score=25.61 Aligned_cols=36 Identities=6% Similarity=-0.111 Sum_probs=30.1
Q ss_pred CcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 46 EDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 46 ~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
-..+++|...-+|.+.+.|..+-.+.+.... +.|++
T Consensus 31 Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~-----l~pee 66 (196)
T PRK10737 31 PLDYLHGHGSLISGLETALEGHEVGDKFDVA-----VGAND 66 (196)
T ss_pred CeEEEeCCCcchHHHHHHHcCCCCCCEEEEE-----EChHH
Confidence 3578999999999999999988877776666 77776
No 206
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.31 E-value=1.4e+02 Score=25.00 Aligned_cols=59 Identities=8% Similarity=-0.103 Sum_probs=39.3
Q ss_pred ceeecHHHHHHhhhhHHHhHHHH--------HHHHHhh---C-CCCCCCCCCcEEeecC--ccchHHHHHHHHhh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEI--------VIKWLDS---N-PAGREGRFEDKQKAVG--SHLYPIITKLYQAW 67 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~--------~~~~l~~---~-~~~~~~~i~~ViLvGG--ss~iP~V~~~l~~~ 67 (183)
++++++++|++++.-+..+..++ +..+-++ + .+ ..++|.++.||| ||+--.+.+.-++.
T Consensus 163 QTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~L--a~~vD~miVVGg~~SsNT~kL~~i~~~~ 235 (298)
T PRK01045 163 QTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKEL--APQADLVIVVGSKNSSNSNRLREVAEEA 235 (298)
T ss_pred cCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHH--HhhCCEEEEECCCCCccHHHHHHHHHHH
Confidence 57899999999999887664322 2222211 1 12 346899999998 67777777766655
No 207
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=24.25 E-value=1.7e+02 Score=24.08 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
....+.++++|+++++ +.+|||.+++--++-+ +-+.+.+.+
T Consensus 226 ~~~~~~i~~~L~~~g~-~~~did~~~~hq~~~~---~~~~~~~~l 266 (326)
T CHL00203 226 FQVPAVIIKCLNALNI-SIDEVDWFILHQANKR---ILEAIANRL 266 (326)
T ss_pred HHHHHHHHHHHHHcCC-CHHHCCEEEECCCCHH---HHHHHHHHh
Confidence 4567788999999998 4999999999888743 334455555
No 208
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=24.23 E-value=2.5e+02 Score=24.11 Aligned_cols=28 Identities=4% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEee
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKA 51 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLv 51 (183)
.+=..+.++++|+++++ .+++||.|++-
T Consensus 33 ~~L~~~a~~~AL~~agl-~~~dID~vi~g 60 (394)
T PRK06445 33 EELAAMLINRLIEKTGI-KPEEIDDIITG 60 (394)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCeeEEE
Confidence 34456678889999998 49999998853
No 209
>PF11378 DUF3181: Protein of unknown function (DUF3181); InterPro: IPR021518 This family of proteins has no known function.
Probab=24.11 E-value=1.1e+02 Score=20.70 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred cccCCceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHH
Q psy5548 2 KSYNGRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIIT 61 (183)
Q Consensus 2 ~~~~~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~ 61 (183)
|.|=++..+.+.==+++..-+-+.....++++|+.-. |=+-||.+++|..+
T Consensus 20 hLYL~DA~L~~~LA~~~~~~l~~~~e~~v~~~L~~i~---------V~lGGG~~~lpL~d 70 (87)
T PF11378_consen 20 HLYLGDAKLHTPLAEECYPLLDQGSEDAVRQILEAIP---------VKLGGGKSKLPLAD 70 (87)
T ss_pred hhhhccchhhHHHHHHHHHhhcCCcHHHHHHHHHcCc---------cccCCCcccccHHH
Confidence 5566666666644444444444456677777777643 45779999999764
No 210
>PF06619 DUF1149: Protein of unknown function (DUF1149); InterPro: IPR009530 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2HNG_A 2O2A_C.
Probab=24.08 E-value=1.3e+02 Score=21.91 Aligned_cols=30 Identities=0% Similarity=-0.026 Sum_probs=24.1
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDS 36 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~ 36 (183)
-..+++++.+.|.+||++-+..+..++=+-
T Consensus 87 ~sd~~~~e~~~Ls~PL~d~i~rLTYEVTeI 116 (127)
T PF06619_consen 87 PSDLSQEEVELLSRPLLDYIERLTYEVTEI 116 (127)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHhheeEEEEE
Confidence 358999999999999999988888776543
No 211
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=23.95 E-value=84 Score=25.56 Aligned_cols=44 Identities=7% Similarity=-0.135 Sum_probs=33.0
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
..+.+.+.++++|+++++. .+||+.++.-.++-.+ .+.+.+.++
T Consensus 221 ~~~~~~~~i~~~l~~~g~~-~~di~~~~~h~~~~~~---~~~~~~~lg 264 (320)
T cd00830 221 AVRLMPESIEEALEKAGLT-PDDIDWFVPHQANLRI---IEAVAKRLG 264 (320)
T ss_pred HHHhhHHHHHHHHHHcCCC-HHHCCEEEECCCCHHH---HHHHHHHhC
Confidence 3456778899999999984 8999999998886544 344555553
No 212
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=23.89 E-value=2.3e+02 Score=22.92 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc--chHHHHHHHHhhcCC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH--LYPIITKLYQAWLVH 70 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~~ 70 (183)
+=..+.++++|+++++ .+++||.++....+. ..|.....+...++-
T Consensus 52 ~la~~A~~~al~~ag~-~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg~ 99 (320)
T cd00830 52 DLAVEAAKKALEDAGI-DADDIDLIIVATSTPDYLFPATACLVQARLGA 99 (320)
T ss_pred HHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCC
Confidence 3357778899999998 489999987654322 257777788888853
No 213
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=23.88 E-value=1.7e+02 Score=25.59 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
.+...+.++++|+++++. .+++..+..+|.... .+...|+.... ++--.|-++||.++.
T Consensus 178 ~~~a~~~l~~~l~~~Gl~-~~di~~i~~TGyGR~------~i~~~~~ad~i--------v~EItaha~GA~~L~ 236 (404)
T TIGR03286 178 IESAEEAVERALEEAGVS-LEDVEAIGTTGYGRF------TIGEHFGADLI--------QEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHHHHHHHcCCC-ccceeEEEeeeecHH------HHhhhcCCCce--------EEEEhhHHHHHHHhc
Confidence 567888899999999874 789999999986643 33344532211 233467789987653
No 214
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=23.60 E-value=1.1e+02 Score=22.13 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=21.2
Q ss_pred eecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC
Q psy5548 9 KAERQDLASAGEKPRSSTSEIVIKWLDSNPAG 40 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~ 40 (183)
-+|++||.++..+- ...++.+.+||++.++.
T Consensus 47 ~Lt~~e~~~~~~p~-~~~v~~V~~wL~~~G~~ 77 (143)
T PF09286_consen 47 YLTPEEFAALFAPS-PEDVAAVKSWLKSHGLT 77 (143)
T ss_dssp ---HHHHHHHHS---HHHHHHHHHHHHHCT-E
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHHHHcCCc
Confidence 48999999999887 55778889999998863
No 215
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=23.48 E-value=1.2e+02 Score=25.74 Aligned_cols=47 Identities=4% Similarity=-0.015 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~ 70 (183)
.......++++|+++++. .+|||.|.+-|-+|.. +.=.+.|...|++
T Consensus 278 ~~~~~~a~~~al~~Agi~-~~did~i~~hgtgt~~~D~~E~~al~~~f~~ 326 (421)
T cd00833 278 GEAQAALIRRAYARAGVD-PSDIDYVEAHGTGTPLGDPIEVEALAKVFGG 326 (421)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHCcEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 344568889999999984 9999999999987765 3445677777854
No 216
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=23.43 E-value=76 Score=22.73 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.4
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEe
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQK 50 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViL 50 (183)
|-+++++..= +.+.+.+.+++.+.++++++. .+||-.|++
T Consensus 6 GAtTv~~nt~----e~I~~at~eLl~~ii~~N~l~-~edivSv~F 45 (117)
T TIGR01796 6 GATTVERNEA----EEIGEAVAELLTELMERNELT-PEDLISVIF 45 (117)
T ss_pred CceecCCCCH----HHHHHHHHHHHHHHHHHcCCC-HHHEEEEEE
Confidence 4455555443 345678889999999999984 788777765
No 217
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=23.35 E-value=1.4e+02 Score=27.76 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=34.0
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHh
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~ 66 (183)
..+++...+.+.+.+.+++.+++.+ .-.+.|.||||-.|..+.+.+.
T Consensus 35 ~~ee~a~~vA~~I~~~I~~~~~~~~------~~~laLsGGsTP~~~Y~~L~~~ 81 (652)
T PRK02122 35 SSEEASRAVAQEIATLIRERQAEGK------PCVLGLATGSSPIGVYAELIRM 81 (652)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC------CEEEEEcCCcCHHHHHHHHHhh
Confidence 4456666666777777777666543 3378999999999999877764
No 218
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.30 E-value=1e+02 Score=25.40 Aligned_cols=38 Identities=3% Similarity=-0.218 Sum_probs=28.6
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL 56 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~ 56 (183)
+.+..+....+.++++|+++++. .+|||.+++--++-+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~~g~~-~~did~~i~H~~~~~ 270 (338)
T PRK09258 233 LLKEGVELAVDTWEAFLAQLGWA-VEQVDRVICHQVGAA 270 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-HHHCCEEecCCCCHH
Confidence 33344556667889999999984 899999999776643
No 219
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=22.73 E-value=2e+02 Score=21.42 Aligned_cols=37 Identities=14% Similarity=-0.079 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHh
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~ 66 (183)
..+.+.+.+.+++.+ .-.+.|.||+|-.+..+...+.
T Consensus 6 ~~i~~~i~~~~~~~~------~~~i~lsgGsTp~~~y~~L~~~ 42 (169)
T cd00458 6 KFIEDKXEKLLEEKD------DMVIGLGTGSTPAYFYKLLGEK 42 (169)
T ss_pred HHHHHHHHHHHHhCC------CEEEEECCCccHHHHHHHHHhh
Confidence 445555555555432 3478899999998888776653
No 220
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.56 E-value=1.6e+02 Score=19.79 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=33.7
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcE-EeecCccchHHHHHHHHhhcCC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDK-QKAVGSHLYPIITKLYQAWLVH 70 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~V-iLvGGss~iP~V~~~l~~~f~~ 70 (183)
...++.+-++.+|+.++.. .++|-.+ +.+-..+..+.+.+...++|++
T Consensus 27 Q~~~v~~ni~~~L~~aG~~-~~dVv~~~iyl~d~~~~~~~n~~~~~~f~~ 75 (101)
T cd06155 27 QMESIFSKLREILQSNGLS-LSDILYVTLYLRDMSDFAEVNSVYGTFFDK 75 (101)
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHEEEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 4445556667788888864 5555333 3345688999999999999974
No 221
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=22.25 E-value=3.3e+02 Score=23.59 Aligned_cols=46 Identities=7% Similarity=-0.023 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCCc
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVHQ 71 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~~ 71 (183)
...+.++++|+++++ +++||++|..-|=+|.. |.-.+.|++.|+..
T Consensus 287 ~~~~a~~~Al~~agi-~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~~ 334 (418)
T PRK07910 287 RAGHAMTRAIELAGL-TPGDIDHVNAHATGTSVGDVAEGKAINNALGGH 334 (418)
T ss_pred HHHHHHHHHHHHhCC-CHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCCC
Confidence 356788999999998 49999999999977765 66778888889643
No 222
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=22.17 E-value=1.1e+02 Score=27.18 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=39.4
Q ss_pred ceeecHHHHHHhhhhHHHh----H------------HHHHHHHHhh----CCCCCCCCCCcEEeecC--ccchHHHHHHH
Q psy5548 7 RRKAERQDLASAGEKPRSS----T------------SEIVIKWLDS----NPAGREGRFEDKQKAVG--SHLYPIITKLY 64 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~----~------------~~~~~~~l~~----~~~~~~~~i~~ViLvGG--ss~iP~V~~~l 64 (183)
++++++.+|+++.+-+... . -.++..+-++ ..+. ..++|.++.||| ||+--.+++.-
T Consensus 306 QTTm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~-~~~vDlmiVVGG~NSSNT~~L~eIa 384 (460)
T PLN02821 306 QTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLV-EEKLDLMLVVGGWNSSNTSHLQEIA 384 (460)
T ss_pred CCCCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHh-hcCCCEEEEECCCCCccHHHHHHHH
Confidence 5789999999988866432 1 2333333322 1121 257999999998 78888888777
Q ss_pred Hhh
Q psy5548 65 QAW 67 (183)
Q Consensus 65 ~~~ 67 (183)
++.
T Consensus 385 ~~~ 387 (460)
T PLN02821 385 EHK 387 (460)
T ss_pred HHh
Confidence 654
No 223
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=22.10 E-value=2e+02 Score=19.09 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=20.4
Q ss_pred eecHHHHHHhhhhHHHh------HHHHHHHHHhhCC
Q psy5548 9 KAERQDLASAGEKPRSS------TSEIVIKWLDSNP 38 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~------~~~~~~~~l~~~~ 38 (183)
+||++||..++.+-+.. -...++++++...
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D 62 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLD 62 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcC
Confidence 89999999998886422 1245666666543
No 224
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=22.08 E-value=3.3e+02 Score=19.99 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeec--CccchH-HHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAV--GSHLYP-IITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvG--Gss~iP-~V~~~l~~~f 68 (183)
.+.++.+.++++.+. ..++.|+++| ||.--| .+.+.+..++
T Consensus 3 ~~~~i~~~~~~i~~~------~~~~~iv~~GiGGS~lg~~~~~~~~~~~~ 46 (158)
T cd05015 3 ELERIKEFAEKVRSG------KKITDVVVIGIGGSDLGPRAVYEALKPYF 46 (158)
T ss_pred HHHHHHHHHHHHhcC------CCCCEEEEEecCccHHHHHHHHHHHHhhc
Confidence 344555555555331 2477888865 554444 3455556555
No 225
>PLN02932 3-ketoacyl-CoA synthase
Probab=22.01 E-value=1.8e+02 Score=26.00 Aligned_cols=48 Identities=4% Similarity=-0.105 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeec-CccchHHHHHHHHhhcCC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAV-GSHLYPIITKLYQAWLVH 70 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvG-Gss~iP~V~~~l~~~f~~ 70 (183)
--+=..+.++++|+++++ +++|||.|+.+- .....|.+.-++.+.++-
T Consensus 148 a~~la~~Aa~~aL~~agi-~p~dId~lIv~tst~~~~Pslaa~V~~~lGl 196 (478)
T PLN02932 148 TEEVIIGAVDNLFRNTGI-SPSDIGILVVNSSTFNPTPSLSSILVNKFKL 196 (478)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEEEccCCCCCCcHHHHHHHHhCC
Confidence 333456678889999998 599999988643 223689999999999853
No 226
>KOG1159|consensus
Probab=21.98 E-value=1.7e+02 Score=26.45 Aligned_cols=54 Identities=15% Similarity=-0.034 Sum_probs=36.5
Q ss_pred ecHHHHH-HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHH-HHHHHHhhcCC
Q psy5548 10 AERQDLA-SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPI-ITKLYQAWLVH 70 (183)
Q Consensus 10 itR~~fe-~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~-V~~~l~~~f~~ 70 (183)
+||++=. -..++.+.+.-..+-++|.+-+ ..+++.|-|..||+ |++.|.+.+++
T Consensus 493 FSRDqe~kvYVQh~i~e~g~~v~~Ll~~~g-------A~~fvaGsS~~MP~~V~~al~eI~~~ 548 (574)
T KOG1159|consen 493 FSRDQEQKVYVQHKIRENGEEVWDLLDNLG-------AYFFVAGSSGKMPKDVKEALIEIVGK 548 (574)
T ss_pred cccccccceeHHHHHHHhhHHHHHHHhccC-------CEEEEecCCCCCcHHHHHHHHHHhhh
Confidence 5665421 3566677777777777776433 15666777779996 78888888853
No 227
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.94 E-value=4.6e+02 Score=21.73 Aligned_cols=52 Identities=13% Similarity=-0.114 Sum_probs=34.0
Q ss_pred CCCCCcEEeecCccchHH---HHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 42 EGRFEDKQKAVGSHLYPI---ITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~---V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
..+.+.|+|.|--+-+.. |++.+..... .++ . .-|-++.|.|+|+.|.-+..
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~-~k~-~------~l~~esaaiG~a~IA~DI~~ 320 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVF-NKV-A------VLPPESAAIGLALIARDIAS 320 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHH-HHH-h------hcCchhhhhhhHHHHHHHHc
Confidence 467888999885554444 7777776552 223 2 34456689999998875554
No 228
>PRK09065 glutamine amidotransferase; Provisional
Probab=21.40 E-value=1.1e+02 Score=24.22 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=31.1
Q ss_pred CCCCCcEEeecCccc----hHHH---HHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 42 EGRFEDKQKAVGSHL----YPII---TKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 42 ~~~i~~ViLvGGss~----iP~V---~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.|++.||... .|.+ ++.|++.+.... |--.+.+|+-+.|..+.+.
T Consensus 52 ~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~-----------PvlGIC~G~Qlla~alGg~ 108 (237)
T PRK09065 52 PDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGM-----------PLLGICYGHQLLAHALGGE 108 (237)
T ss_pred hhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCC-----------CEEEEChhHHHHHHHcCCc
Confidence 467889999999864 4444 445555543222 2334778888877766543
No 229
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=2e+02 Score=27.12 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=38.0
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
...|..|.|.||-.+-..+.+.+.+.+.+. .+..+ +-...-|-.++.|=++.++
T Consensus 691 ~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~--~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 691 KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFH--QEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred hcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeee--cccCCCCCceeHHHHHHHH
Confidence 456889999999999999988888877543 22111 0002337889999988773
No 230
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=21.20 E-value=91 Score=21.85 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=20.2
Q ss_pred CcEEeecCccchHHHHHHHHhh
Q psy5548 46 EDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 46 ~~ViLvGGss~iP~V~~~l~~~ 67 (183)
+..+|+|-.|.+|.|...|+.+
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~l 23 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEAL 23 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS
T ss_pred ceEEEEeccccHHHHHHHHHhC
Confidence 4689999999999999999987
No 231
>PRK08250 glutamine amidotransferase; Provisional
Probab=21.19 E-value=1.4e+02 Score=23.68 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCCCCcEEeecCccc-------hHHH-----HHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 42 EGRFEDKQKAVGSHL-------YPII-----TKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 42 ~~~i~~ViLvGGss~-------iP~V-----~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.|++.||... .|.+ ++.|+..... --|--+|..|+-+.|..+.+.
T Consensus 43 ~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~-----------~~PvlGIC~G~Qlla~alGg~ 104 (235)
T PRK08250 43 ADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKA-----------GKAVIGVCLGAQLIGEALGAK 104 (235)
T ss_pred ccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHc-----------CCCEEEEChhHHHHHHHhCce
Confidence 467889999999543 3333 3445554421 234456889998888877654
No 232
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=21.11 E-value=2.8e+02 Score=23.61 Aligned_cols=45 Identities=4% Similarity=-0.132 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeec---CccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAV---GSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvG---Gss~iP~V~~~l~~~f~ 69 (183)
.+=..+.++++|+++++ +++|||.|++ | +....|..-..+...++
T Consensus 23 ~~La~~A~~~AL~dAgl-~~~dID~vi~-~~~~~~~~~~~~a~~v~~~lG 70 (386)
T cd00751 23 DDLGAAVIKALLERAGL-DPEEVDDVIM-GNVLQAGEGQNPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHHHHhcCC-CHHHCCEEEE-EeccCCCCCChHHHHHHHHcC
Confidence 34456778899999998 4899999885 3 11113444445666554
No 233
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=21.09 E-value=1.2e+02 Score=25.86 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCcc-ch------------HHHHHHHHhh
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSH-LY------------PIITKLYQAW 67 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss-~i------------P~V~~~l~~~ 67 (183)
+.+.+.+.+.+...- +...|..|+|.||-| || |.++..++..
T Consensus 156 ~~~~~~i~~~~~~~~--~~~~i~~iILAGG~SsRmG~~K~ll~~~Gk~ll~~~l~~l 210 (369)
T PRK14490 156 AAIADFIEGHLLGRA--EEVPLSGLVLAGGRSSRMGSDKALLSYHESNQLVHTAALL 210 (369)
T ss_pred HHHHHHHHHHHhccc--ccCCceEEEEcCCccccCCCCcEEEEECCccHHHHHHHHH
Confidence 334444444443321 234578999988754 55 6666665544
No 234
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.01 E-value=1.3e+02 Score=24.96 Aligned_cols=59 Identities=7% Similarity=-0.011 Sum_probs=38.9
Q ss_pred ceeecHHHHHHhhhhHHHhH--H------HHHHHHHhh----CCCCCCCCCCcEEeecC--ccchHHHHHHHHhh
Q psy5548 7 RRKAERQDLASAGEKPRSST--S------EIVIKWLDS----NPAGREGRFEDKQKAVG--SHLYPIITKLYQAW 67 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~--~------~~~~~~l~~----~~~~~~~~i~~ViLvGG--ss~iP~V~~~l~~~ 67 (183)
++++++++|++++.-+..+. . .++..+-++ ..+ ..++|.++.||| ||+--.+.+.-++.
T Consensus 161 QTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~l--a~~vD~miVVGg~nSsNT~rL~ei~~~~ 233 (280)
T TIGR00216 161 QTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKEL--APEVDLMIVIGGKNSSNTTRLYEIAEEH 233 (280)
T ss_pred cCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHH--HhhCCEEEEECCCCCchHHHHHHHHHHh
Confidence 67999999999998887765 1 122222211 112 346899999999 67777776666554
No 235
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=21.01 E-value=2.8e+02 Score=19.81 Aligned_cols=27 Identities=7% Similarity=0.196 Sum_probs=22.9
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
...++.++||+....+..+++.|....
T Consensus 88 ~~~~~~LvlvA~p~~LG~LR~~L~~~~ 114 (138)
T PF10116_consen 88 AGKFDRLVLVAPPRFLGLLREHLSKAV 114 (138)
T ss_pred hCCCCeEEEEECHHHHHHHHHHhCHHH
Confidence 456889999999999999999887655
No 236
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=20.81 E-value=62 Score=20.55 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=13.0
Q ss_pred cCCceeecHHHHHHhh
Q psy5548 4 YNGRRKAERQDLASAG 19 (183)
Q Consensus 4 ~~~~~~itR~~fe~l~ 19 (183)
..+++.+||++.|..+
T Consensus 45 rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 45 RSFPYSLSREDVEAAI 60 (63)
T ss_pred EeccCcCCHHHHHHHH
Confidence 3567899999999876
No 237
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.75 E-value=2.9e+02 Score=23.44 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
-..+.++++|+++++ ++++||.++..-.+ ..+|..-..|...++
T Consensus 66 La~~A~~~aL~~agi-~~~dId~li~~s~~~~~~~p~~a~~v~~~Lg 111 (378)
T PRK06816 66 MAAEAIRDLLDDAGF-SLGDIELLACGTSQPDQLMPGHASMVHGELG 111 (378)
T ss_pred HHHHHHHHHHHHcCC-CHHHCCEEEEEECCCCcCChHHHHHHHhhCC
Confidence 356678889999998 59999998875422 346776666777774
No 238
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.68 E-value=2.2e+02 Score=23.30 Aligned_cols=43 Identities=9% Similarity=-0.109 Sum_probs=30.3
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
.+....+.++++|+++++. .+|||.+++-=++.+ +.+.+.+.+
T Consensus 225 ~~~~~~~~~~~~L~~~gl~-~~did~~~~h~~~~~---~~~~~~~~l 267 (326)
T PRK05963 225 AVRMMSGASQNVLASAAMT-PQDIDRFFPHQANAR---IVDKVCETI 267 (326)
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHCCEEEeCCCCHH---HHHHHHHHc
Confidence 3444566788999999984 899999999766633 344455544
No 239
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=20.68 E-value=1.3e+02 Score=24.56 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
.+..+.+.++++|+++++ +.+||+.++.-.++.+ +.+.+.+.+
T Consensus 217 ~~~~~~~~~~~~l~~~g~-~~~di~~~~~h~~~~~---~~~~~~~~l 259 (318)
T TIGR00747 217 AVRKMGDVVEETLEANGL-DPEDIDWFVPHQANLR---IIEALAKRL 259 (318)
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEECCCCHH---HHHHHHHHc
Confidence 345567788999999998 4899999998777644 344556665
No 240
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=20.57 E-value=3e+02 Score=19.04 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=28.4
Q ss_pred CCCCcCc-ceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEe
Q psy5548 135 RNTTIPT-KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181 (183)
Q Consensus 135 ~~t~lP~-~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~ 181 (183)
+++.=|. ..+..|.........+.+.||.-+.. .+.+||...+.
T Consensus 36 ~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~---~~~~lG~~~i~ 80 (121)
T cd08378 36 ERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA---KDDFLGGVCFD 80 (121)
T ss_pred CCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC---cCceeeeEEEE
Confidence 4555666 34556665433457788999865532 67788988764
No 241
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=20.53 E-value=1.6e+02 Score=25.38 Aligned_cols=48 Identities=4% Similarity=-0.221 Sum_probs=37.3
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc--hHHHHHHHHhhcCCc
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL--YPIITKLYQAWLVHQ 71 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~--iP~V~~~l~~~f~~~ 71 (183)
.....+.+.++|+++++ +++||++|..-|-+|. =+.-.+.|++.|+..
T Consensus 274 ~~~~~~ai~~AL~~Agi-~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~fg~~ 323 (405)
T PRK09116 274 AETMQIAMELALKDAGL-APEDIGYVNAHGTATDRGDIAESQATAAVFGAR 323 (405)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHcCEEECcCccCCCCCHHHHHHHHHHhCCC
Confidence 34566888999999998 4899999999876664 366677888889643
No 242
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=20.42 E-value=1.9e+02 Score=20.14 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHhhCCCCCCCCC-CcEEeecCccchHHHHHHHHhhcCC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRF-EDKQKAVGSHLYPIITKLYQAWLVH 70 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i-~~ViLvGGss~iP~V~~~l~~~f~~ 70 (183)
..+.+-++.+|+.++.. .++| .-.+.+-.....+.+.+...++|++
T Consensus 51 ~~~~~ni~~~L~~aG~~-~~dvv~~~vyv~~~~~~~~~~~~~~~~f~~ 97 (124)
T TIGR00004 51 EQVLENLKAILEAAGLS-LDDVVKTTVFLTDLNDFAEVNEVYGQYFDE 97 (124)
T ss_pred HHHHHHHHHHHHHcCCC-HHHEEEEEEEEeChHHHHHHHHHHHHHcCC
Confidence 44555556777777753 5555 3334456778899999999999964
No 243
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=20.31 E-value=1.3e+02 Score=26.24 Aligned_cols=40 Identities=8% Similarity=-0.034 Sum_probs=28.0
Q ss_pred HhhhhHHHh-HHHHHHHHHhhCCCCCCCCCCcEEeecCccc
Q psy5548 17 SAGEKPRSS-TSEIVIKWLDSNPAGREGRFEDKQKAVGSHL 56 (183)
Q Consensus 17 ~l~~~l~~~-~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~ 56 (183)
.+|..+.+. ...+++..|++.+..--..+|.++||||.|.
T Consensus 32 ticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~ 72 (399)
T PRK04439 32 TICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSA 72 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEe
Confidence 455555555 3456666778776433578999999999887
No 244
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.20 E-value=1.2e+02 Score=23.01 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=12.5
Q ss_pred CCCCcEEeecCccchH
Q psy5548 43 GRFEDKQKAVGSHLYP 58 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP 58 (183)
..+|.|+|.||.+.-|
T Consensus 52 ~~~dglvl~GG~~~~~ 67 (189)
T cd01745 52 ELLDGLLLTGGGDVDP 67 (189)
T ss_pred hhCCEEEECCCCCCCh
Confidence 4688999999986544
No 245
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=20.19 E-value=2.2e+02 Score=17.32 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=27.1
Q ss_pred EEEeCCCCcCc-ceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEE
Q psy5548 131 ALIKRNTTIPT-KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFK 179 (183)
Q Consensus 131 ~ii~~~t~lP~-~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~ 179 (183)
.=+.+++.-|. .....|......-..+.|.||..+... .+..||+.+
T Consensus 38 T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~--~~~~iG~~~ 85 (85)
T PF00168_consen 38 TKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG--KDELIGEVK 85 (85)
T ss_dssp ECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSS--SEEEEEEEE
T ss_pred eeeeeccccceeeeeeeeeeecccccceEEEEEECCCCC--CCCEEEEEC
Confidence 33345555555 234455532223344999999766443 388999864
Done!