Query psy5548
Match_columns 183
No_of_seqs 195 out of 1298
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:21:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9q_A Chaperone protein DNAK; 100.0 1E-36 3.4E-41 271.7 18.7 166 6-182 296-461 (605)
2 1yuw_A Heat shock cognate 71 k 100.0 2.7E-35 9.3E-40 260.1 17.5 170 7-182 294-463 (554)
3 2kho_A Heat shock protein 70; 100.0 2E-35 6.7E-40 263.3 13.6 165 7-182 297-461 (605)
4 2v7y_A Chaperone protein DNAK; 100.0 1.5E-34 5.2E-39 252.9 16.6 165 7-182 266-430 (509)
5 3d2f_A Heat shock protein homo 100.0 1.9E-32 6.6E-37 246.6 15.0 163 7-182 298-466 (675)
6 3dob_A Heat shock 70 kDa prote 99.7 5.8E-18 2E-22 126.1 9.2 71 112-182 2-72 (152)
7 3dqg_A Heat shock 70 kDa prote 99.7 5.9E-18 2E-22 126.0 9.2 71 112-182 2-72 (151)
8 3h0x_A 78 kDa glucose-regulate 99.7 6.4E-18 2.2E-22 126.0 8.5 71 112-182 2-72 (152)
9 3i33_A Heat shock-related 70 k 99.7 1E-17 3.5E-22 141.6 8.5 89 7-101 315-403 (404)
10 4e81_A Chaperone protein DNAK; 99.7 1.2E-17 4.1E-22 131.4 8.2 72 111-182 2-73 (219)
11 1q5l_A Chaperone protein DNAK; 99.7 5.5E-18 1.9E-22 123.9 5.4 76 107-182 14-89 (135)
12 4gni_A Putative heat shock pro 99.7 2.1E-17 7.1E-22 140.2 9.5 89 7-101 308-403 (409)
13 3n8e_A Stress-70 protein, mito 99.7 1.7E-17 5.8E-22 127.0 8.0 75 108-182 18-92 (182)
14 2op6_A Heat shock 70 kDa prote 99.7 5.2E-17 1.8E-21 120.9 8.9 71 112-182 2-72 (152)
15 3qfu_A 78 kDa glucose-regulate 99.7 3.8E-17 1.3E-21 137.4 8.6 88 7-100 307-394 (394)
16 1dkg_D Molecular chaperone DNA 99.6 2.3E-16 7.7E-21 132.5 8.3 86 7-99 297-382 (383)
17 1u00_A HSC66, chaperone protei 99.6 9.7E-16 3.3E-20 121.1 8.9 70 113-182 1-70 (227)
18 1jce_A ROD shape-determining p 99.4 6.7E-14 2.3E-18 115.9 2.1 88 7-100 238-327 (344)
19 3h1q_A Ethanolamine utilizatio 99.1 8.8E-11 3E-15 93.9 6.4 75 11-96 198-272 (272)
20 4ehu_A Activator of 2-hydroxyi 98.9 3.8E-09 1.3E-13 84.8 8.1 75 15-100 182-256 (276)
21 4a2a_A Cell division protein F 98.8 2.2E-09 7.4E-14 91.7 5.2 91 8-99 287-394 (419)
22 2fsj_A Hypothetical protein TA 98.7 1.8E-08 6.2E-13 83.7 5.5 78 9-97 264-343 (346)
23 2ych_A Competence protein PILM 98.7 1E-08 3.6E-13 85.5 3.8 61 8-69 269-331 (377)
24 2zgy_A Plasmid segregation pro 98.6 2.3E-07 7.7E-12 76.0 8.9 73 12-96 245-319 (320)
25 2fxu_A Alpha-actin-1, actin, a 98.3 1.5E-07 5.3E-12 78.7 1.5 85 8-97 248-348 (375)
26 1k8k_A ARP3, actin-like protei 98.1 1.3E-06 4.5E-11 73.9 2.8 87 7-98 268-387 (418)
27 3js6_A Uncharacterized PARM pr 97.9 2.3E-05 7.8E-10 65.3 6.7 73 14-101 265-339 (355)
28 4apw_A ALP12; actin-like prote 97.7 0.00015 5.1E-09 59.6 9.1 78 10-100 249-326 (329)
29 1hux_A Activator of (R)-2-hydr 97.3 0.00077 2.6E-08 53.8 8.2 73 16-99 185-257 (270)
30 1k8k_B ARP2, actin-like protei 97.1 0.00014 4.7E-09 61.2 1.9 87 8-98 252-364 (394)
31 3i8b_A Xylulose kinase; strain 97.0 0.0027 9.1E-08 55.3 8.5 80 11-102 395-475 (515)
32 3l0q_A Xylulose kinase; xlylul 96.9 0.0021 7.3E-08 56.3 7.6 82 9-102 408-493 (554)
33 4bc3_A Xylulose kinase; transf 96.8 0.0039 1.3E-07 54.4 8.7 77 17-101 408-484 (538)
34 3ll3_A Gluconate kinase; xylul 96.8 0.0053 1.8E-07 53.2 8.8 52 44-102 393-444 (504)
35 3ezw_A Glycerol kinase; glycer 96.7 0.0047 1.6E-07 53.7 8.0 66 26-102 388-453 (526)
36 2zf5_O Glycerol kinase; hypert 96.7 0.0045 1.5E-07 53.4 7.7 51 44-101 393-443 (497)
37 3jvp_A Ribulokinase; PSI-II, N 96.7 0.0052 1.8E-07 54.1 8.1 51 44-101 439-490 (572)
38 3g25_A Glycerol kinase; IDP007 96.6 0.0078 2.7E-07 52.0 8.6 81 11-102 374-455 (501)
39 2dpn_A Glycerol kinase; thermu 96.5 0.006 2.1E-07 52.6 7.3 80 11-101 368-448 (495)
40 2itm_A Xylulose kinase, xylulo 96.5 0.0058 2E-07 52.5 6.9 52 44-102 386-438 (484)
41 2d4w_A Glycerol kinase; alpha 96.4 0.0091 3.1E-07 51.6 8.1 81 11-102 373-454 (504)
42 3ifr_A Carbohydrate kinase, FG 96.4 0.0071 2.4E-07 52.4 7.3 52 44-102 400-451 (508)
43 3hz6_A Xylulokinase; xylulose, 96.4 0.0081 2.8E-07 52.1 7.7 51 45-102 403-454 (511)
44 2p3r_A Glycerol kinase; glycer 96.3 0.011 3.7E-07 51.3 8.0 52 44-102 401-452 (510)
45 3h3n_X Glycerol kinase; ATP-bi 96.3 0.012 4.1E-07 50.9 8.2 52 44-102 403-454 (506)
46 4e1j_A Glycerol kinase; struct 96.3 0.0095 3.2E-07 51.8 7.6 52 44-102 425-476 (520)
47 2ews_A Pantothenate kinase; PA 96.3 0.0036 1.2E-07 50.6 4.4 47 45-96 237-286 (287)
48 2d0o_A DIOL dehydratase-reacti 96.3 0.0093 3.2E-07 52.2 6.9 56 42-97 546-603 (610)
49 2w40_A Glycerol kinase, putati 96.2 0.014 4.8E-07 50.4 8.1 80 11-101 376-457 (503)
50 1nbw_A Glycerol dehydratase re 96.1 0.0097 3.3E-07 52.2 6.1 55 42-96 548-604 (607)
51 2uyt_A Rhamnulokinase; rhamnos 95.4 0.052 1.8E-06 46.5 8.2 47 44-98 393-439 (489)
52 2i7n_A Pantothenate kinase 1; 93.7 0.056 1.9E-06 45.0 4.0 47 45-96 306-358 (360)
53 3h6e_A Carbohydrate kinase, FG 93.3 0.097 3.3E-06 45.1 5.2 46 46-98 389-435 (482)
54 3qbx_A Anhydro-N-acetylmuramic 92.5 0.46 1.6E-05 39.6 7.9 78 17-99 260-337 (371)
55 3cqy_A Anhydro-N-acetylmuramic 89.2 1.2 4.1E-05 37.1 7.4 78 16-99 266-343 (370)
56 3vth_A Hydrogenase maturation 88.9 0.37 1.3E-05 43.9 4.4 56 44-101 693-750 (761)
57 3ttc_A HYPF, transcriptional r 88.8 1 3.5E-05 40.3 7.2 78 17-98 574-651 (657)
58 4g9i_A Hydrogenase maturation 87.9 0.98 3.3E-05 41.2 6.5 59 43-102 704-764 (772)
59 3ven_A O-carbamoyltransferase 86.9 0.93 3.2E-05 39.9 5.6 82 15-102 280-361 (576)
60 2ivn_A O-sialoglycoprotein end 86.7 0.6 2.1E-05 37.9 4.1 55 44-100 244-300 (330)
61 3dwl_A Actin-related protein 3 85.0 0.5 1.7E-05 39.9 2.9 86 8-98 280-396 (427)
62 3eno_A Putative O-sialoglycopr 84.4 1 3.4E-05 36.8 4.3 70 24-101 235-306 (334)
63 2e2o_A Hexokinase; acetate and 83.8 2.3 7.9E-05 33.4 6.2 49 44-98 239-287 (299)
64 4fo0_A Actin-related protein 8 82.7 0.86 2.9E-05 39.7 3.5 54 45-98 501-564 (593)
65 3r8e_A Hypothetical sugar kina 81.5 1.9 6.4E-05 34.5 4.9 69 21-96 239-317 (321)
66 2gup_A ROK family protein; sug 79.1 2.1 7.3E-05 33.5 4.4 50 44-98 227-287 (292)
67 3qb0_A Actin-related protein 4 78.7 1.7 5.7E-05 37.6 3.8 72 26-97 394-470 (498)
68 3vgl_A Glucokinase; ROK family 78.0 2.8 9.7E-05 33.5 4.9 69 21-96 231-310 (321)
69 2qm1_A Glucokinase; alpha-beta 75.7 2.9 0.0001 33.1 4.3 69 22-97 242-320 (326)
70 4htl_A Beta-glucoside kinase; 74.7 2.3 7.7E-05 33.7 3.4 50 44-98 237-291 (297)
71 3vov_A Glucokinase, hexokinase 74.6 2.6 8.9E-05 33.4 3.7 49 44-97 237-294 (302)
72 4db3_A Glcnac kinase, N-acetyl 74.2 2.3 7.9E-05 34.2 3.4 68 22-96 249-324 (327)
73 3ist_A Glutamate racemase; str 70.4 6 0.00021 31.1 4.9 57 25-93 162-218 (269)
74 2aa4_A Mannac kinase, putative 70.3 2 6.8E-05 33.6 2.0 47 45-96 234-286 (289)
75 1zc6_A Probable N-acetylglucos 64.8 4 0.00014 32.2 2.8 60 22-97 231-292 (305)
76 1zbs_A Hypothetical protein PG 64.3 5.6 0.00019 31.2 3.6 67 19-98 212-280 (291)
77 1saz_A Probable butyrate kinas 63.3 6.3 0.00021 32.4 3.8 49 43-96 294-346 (381)
78 3epq_A Putative fructokinase; 62.7 14 0.00048 29.2 5.7 49 44-97 224-288 (302)
79 2hoe_A N-acetylglucosamine kin 61.8 8.3 0.00028 31.5 4.3 49 44-97 314-370 (380)
80 1hnj_A Beta-ketoacyl-acyl carr 61.1 13 0.00046 29.2 5.3 43 23-69 217-259 (317)
81 2ch5_A NAGK protein; transfera 60.3 5.3 0.00018 31.9 2.8 47 47-99 268-325 (347)
82 2yhw_A Bifunctional UDP-N-acet 58.5 13 0.00045 29.6 4.9 68 22-97 264-337 (343)
83 2ap1_A Putative regulator prot 58.4 1.9 6.5E-05 34.4 -0.2 46 45-96 270-324 (327)
84 3lwd_A 6-phosphogluconolactona 57.6 18 0.0006 27.6 5.2 48 12-65 7-54 (226)
85 3uhf_A Glutamate racemase; str 56.6 14 0.00049 29.1 4.6 54 26-93 183-236 (274)
86 3htv_A D-allose kinase, alloki 55.4 16 0.00056 28.9 4.9 49 44-97 239-298 (310)
87 1k9u_A Polcalcin PHL P 7; poll 54.3 5.9 0.0002 23.8 1.7 33 5-37 15-47 (78)
88 2q2r_A Glucokinase 1, putative 53.6 7.4 0.00025 31.7 2.6 15 84-98 357-371 (373)
89 1mzj_A Beta-ketoacylsynthase I 51.6 16 0.00054 29.1 4.3 43 23-69 230-272 (339)
90 1zxo_A Conserved hypothetical 51.3 3.2 0.00011 32.7 0.0 45 44-96 232-276 (291)
91 2ebd_A 3-oxoacyl-[acyl-carrier 51.1 19 0.00065 28.0 4.6 43 23-69 209-251 (309)
92 1ub7_A 3-oxoacyl-[acyl-carrier 51.1 18 0.00061 28.5 4.5 43 23-69 219-261 (322)
93 1z05_A Transcriptional regulat 50.6 12 0.0004 31.2 3.4 48 44-97 357-414 (429)
94 1z6r_A MLC protein; transcript 49.1 8 0.00027 31.8 2.2 51 44-99 334-394 (406)
95 2dwu_A Glutamate racemase; iso 48.8 12 0.00041 29.3 3.1 56 26-93 165-220 (276)
96 2vvt_A Glutamate racemase; iso 48.3 30 0.001 27.2 5.4 58 25-94 181-238 (290)
97 1zow_A 3-oxoacyl-[acyl-carrier 48.1 20 0.00067 28.1 4.2 43 23-69 211-253 (313)
98 3en9_A Glycoprotease, O-sialog 47.5 13 0.00046 31.9 3.4 25 45-69 249-273 (540)
99 4am6_A Actin-like protein ARP8 47.5 7.7 0.00026 34.6 1.9 25 45-69 501-525 (655)
100 3out_A Glutamate racemase; str 46.7 32 0.0011 26.8 5.3 54 26-93 163-216 (268)
101 3nwp_A 6-phosphogluconolactona 46.6 27 0.00092 26.7 4.7 47 14-66 13-59 (233)
102 3ico_A 6PGL, 6-phosphogluconol 44.6 20 0.00067 28.1 3.7 47 13-65 30-76 (268)
103 2ivn_A O-sialoglycoprotein end 44.1 30 0.001 27.7 4.8 44 18-62 43-86 (330)
104 3oc6_A 6-phosphogluconolactona 44.1 20 0.00069 27.6 3.7 47 13-65 14-60 (248)
105 2x3e_A 3-oxoacyl-[acyl-carrier 44.1 18 0.00063 28.7 3.5 43 23-69 223-265 (331)
106 3lhi_A Putative 6-phosphogluco 43.9 29 0.001 26.4 4.5 46 14-65 10-55 (232)
107 3eno_A Putative O-sialoglycopr 43.9 27 0.00093 28.1 4.5 45 19-64 49-93 (334)
108 1b73_A Glutamate racemase; iso 43.8 19 0.00064 27.7 3.4 53 25-91 155-207 (254)
109 3tx2_A Probable 6-phosphogluco 43.6 21 0.00072 27.6 3.7 47 13-65 14-60 (251)
110 2jfq_A Glutamate racemase; cel 43.3 30 0.001 27.1 4.7 55 27-93 182-236 (286)
111 2jfz_A Glutamate racemase; cel 41.9 25 0.00087 27.0 3.9 56 26-93 159-219 (255)
112 1zuw_A Glutamate racemase 1; ( 41.6 16 0.00053 28.6 2.7 42 44-94 177-218 (272)
113 3r6m_A YEAZ, resuscitation pro 41.4 31 0.0011 26.1 4.2 66 19-92 32-103 (213)
114 1ted_A PKS18; thiolase fold, s 38.3 27 0.00093 28.5 3.8 42 23-68 286-327 (393)
115 1sz2_A Glucokinase, glucose ki 38.3 18 0.00063 28.7 2.6 49 44-98 264-326 (332)
116 2oho_A Glutamate racemase; iso 38.0 35 0.0012 26.5 4.2 56 25-93 169-224 (273)
117 3zyy_X Iron-sulfur cluster bin 37.5 65 0.0022 28.6 6.2 84 5-95 497-581 (631)
118 2gp6_A 3-oxoacyl-[acyl-carrier 37.3 42 0.0014 28.0 4.8 46 24-70 302-349 (434)
119 3eb9_A 6-phosphogluconolactona 36.9 39 0.0013 26.3 4.3 45 14-64 12-56 (266)
120 2a6a_A Hypothetical protein TM 35.1 39 0.0013 25.6 3.9 49 16-65 39-87 (218)
121 2gel_A Putative GRAM negative 34.9 38 0.0013 25.7 3.9 42 20-62 32-73 (231)
122 1u6e_A 3-oxoacyl-[acyl-carrier 34.8 31 0.0011 27.1 3.5 35 23-58 231-265 (335)
123 4dfe_A 3-oxoacyl-[acyl-carrier 34.1 40 0.0014 26.7 4.1 44 21-68 231-274 (333)
124 2gzm_A Glutamate racemase; enz 33.7 28 0.00095 27.0 2.9 42 44-94 176-217 (267)
125 4ewp_A 3-oxoacyl-[acyl-carrier 33.2 36 0.0012 27.1 3.7 44 26-70 66-111 (350)
126 1j3n_A 3-oxoacyl-(acyl-carrier 33.1 33 0.0011 28.1 3.4 44 24-68 275-320 (408)
127 3qvl_A Putative hydantoin race 32.6 62 0.0021 24.7 4.8 54 23-93 159-212 (245)
128 3dnf_A ISPH, LYTB, 4-hydroxy-3 32.1 33 0.0011 27.5 3.1 59 7-67 164-234 (297)
129 1v8d_A Hypothetical protein (T 30.4 49 0.0017 25.3 3.7 32 21-56 42-73 (235)
130 3l9k_W Dynein intermediate cha 29.9 69 0.0024 17.3 3.3 16 21-36 17-32 (38)
131 1tqy_A Beta-ketoacyl synthase/ 29.9 48 0.0017 27.3 4.0 44 25-69 284-329 (424)
132 1xho_A Chorismate mutase; sout 29.0 45 0.0015 23.8 3.1 29 21-50 48-76 (148)
133 1u0m_A Putative polyketide syn 28.8 48 0.0016 26.9 3.7 41 24-69 253-293 (382)
134 2opo_A Polcalcin CHE A 3; calc 28.8 12 0.0004 22.9 -0.0 33 5-37 23-55 (86)
135 2gqd_A 3-oxoacyl-[acyl-carrier 28.6 42 0.0014 27.9 3.4 44 25-69 302-347 (437)
136 3euo_A Type III pentaketide sy 28.4 1.2E+02 0.0039 24.7 6.0 47 22-69 81-128 (379)
137 3cne_A Putative protease I; st 28.1 42 0.0014 23.7 3.0 44 43-97 65-119 (175)
138 3ov2_A Curcumin synthase; type 28.0 1.1E+02 0.0039 24.9 5.9 50 19-69 99-149 (393)
139 2iwz_A 3-oxoacyl-[acyl-carrier 27.3 53 0.0018 27.3 3.8 45 24-69 301-347 (438)
140 1ox0_A Beta ketoacyl-acyl carr 27.3 58 0.002 26.9 4.1 46 24-70 296-343 (430)
141 3s3l_A CERJ; acyltransferase, 26.8 44 0.0015 27.0 3.1 42 22-64 236-278 (357)
142 1cza_N Hexokinase type I; stru 26.7 33 0.0011 31.8 2.6 17 84-100 445-461 (917)
143 3a5r_A Benzalacetone synthase; 26.6 1.3E+02 0.0043 24.4 5.9 49 20-69 96-145 (387)
144 2rk3_A Protein DJ-1; parkinson 26.2 43 0.0015 24.3 2.7 44 43-97 65-114 (197)
145 3s21_A 3-oxoacyl-[ACP] synthas 25.8 45 0.0015 26.6 3.0 43 22-68 244-286 (345)
146 1bdg_A Hexokinase; phosphotran 25.5 60 0.002 27.3 3.8 74 17-98 365-446 (451)
147 4hcj_A THIJ/PFPI domain protei 25.5 47 0.0016 24.0 2.8 45 42-97 67-116 (177)
148 3led_A 3-oxoacyl-acyl carrier 25.4 62 0.0021 26.6 3.8 44 26-70 121-166 (392)
149 2eq5_A 228AA long hypothetical 25.2 49 0.0017 24.5 3.0 38 44-92 174-213 (228)
150 3oit_A OS07G0271500 protein; t 24.9 1.7E+02 0.0059 23.7 6.4 49 20-69 94-143 (387)
151 1vhq_A Enhancing lycopene bios 24.9 24 0.00082 26.6 1.1 48 42-100 88-151 (232)
152 1woq_A Inorganic polyphosphate 24.9 30 0.001 26.4 1.7 48 44-99 214-262 (267)
153 1u0m_A Putative polyketide syn 24.8 1.9E+02 0.0063 23.3 6.6 47 22-69 84-131 (382)
154 1ee0_A 2-pyrone synthase; poly 24.5 1.6E+02 0.0055 23.9 6.2 49 20-69 105-154 (402)
155 3nq4_A 6,7-dimethyl-8-ribityll 24.5 1.6E+02 0.0055 21.1 5.4 46 20-67 24-70 (156)
156 3il3_A 3-oxoacyl-[acyl-carrier 24.4 98 0.0034 24.4 4.8 42 23-68 223-264 (323)
157 1xpm_A 3-hydroxy-3-methylgluta 24.4 63 0.0022 26.4 3.7 35 22-57 205-239 (396)
158 3l18_A Intracellular protease 24.3 48 0.0016 23.2 2.6 44 43-97 62-110 (168)
159 4dfe_A 3-oxoacyl-[acyl-carrier 24.2 87 0.003 24.7 4.4 43 26-69 69-113 (333)
160 3s81_A Putative aspartate race 23.6 54 0.0019 25.5 3.0 41 44-95 209-249 (268)
161 1dbf_A Protein (chorismate mut 23.0 51 0.0017 23.0 2.4 29 21-50 19-47 (127)
162 3awk_A Chalcone synthase-like 23.0 1.9E+02 0.0064 23.5 6.4 49 20-69 113-162 (402)
163 3il6_A 3-oxoacyl-[acyl-carrier 22.8 1.2E+02 0.004 23.9 4.9 44 26-70 56-101 (321)
164 1xes_A Dihydropinosylvin synth 22.8 1.5E+02 0.0051 24.3 5.7 49 20-69 123-172 (413)
165 3e1h_A PKSIIINC, putative unch 22.7 1.6E+02 0.0056 24.8 6.0 47 22-69 110-157 (465)
166 3led_A 3-oxoacyl-acyl carrier 22.5 83 0.0029 25.8 4.1 35 21-56 288-322 (392)
167 3h78_A PQS biosynthetic enzyme 22.5 90 0.0031 25.1 4.2 43 22-68 252-294 (359)
168 2l4h_A Calcium and integrin-bi 22.5 36 0.0012 24.9 1.7 19 5-23 141-159 (214)
169 4efi_A 3-oxoacyl-(acyl-carrier 22.3 98 0.0034 24.8 4.4 44 26-70 70-115 (354)
170 1ufy_A Chorismate mutase; shik 22.0 59 0.002 22.4 2.5 29 21-50 18-47 (122)
171 3css_A 6-phosphogluconolactona 21.9 61 0.0021 25.1 2.9 21 45-65 38-58 (267)
172 3l3b_A ES1 family protein; ssg 21.9 51 0.0017 25.2 2.5 46 42-98 105-167 (242)
173 2d3m_A Pentaketide chromone sy 21.7 2E+02 0.0068 23.4 6.3 49 20-69 113-162 (406)
174 1i88_A CHS2, chalcone synthase 21.7 1.7E+02 0.0059 23.5 5.9 49 20-69 100-149 (389)
175 2vrn_A Protease I, DR1199; cys 21.6 47 0.0016 23.8 2.1 44 43-97 74-123 (190)
176 3il3_A 3-oxoacyl-[acyl-carrier 21.3 1.3E+02 0.0045 23.6 5.0 43 26-69 62-106 (323)
177 2ewc_A Conserved hypothetical 21.2 1.9E+02 0.0064 19.5 5.1 47 23-70 42-89 (126)
178 1jfl_A Aspartate racemase; alp 21.2 70 0.0024 23.8 3.1 52 27-94 172-223 (228)
179 2p0u_A Stilbenecarboxylate syn 21.0 1.8E+02 0.0061 23.8 5.9 49 20-69 118-167 (413)
180 3gwa_A 3-oxoacyl-(acyl-carrier 20.8 78 0.0027 25.5 3.5 43 22-68 264-306 (365)
181 3h4s_E KCBP interacting Ca2+-b 20.6 38 0.0013 22.7 1.4 18 5-22 52-69 (135)
182 1jba_A GCAP-2, protein (guanyl 20.4 47 0.0016 23.6 1.9 64 5-68 107-188 (204)
183 3efe_A THIJ/PFPI family protei 20.4 79 0.0027 23.3 3.2 44 43-97 73-120 (212)
184 3f5d_A Protein YDEA; unknow pr 20.3 81 0.0028 23.2 3.3 44 43-97 62-108 (206)
185 3t3l_A Frataxin, mitochondrial 20.1 2.2E+02 0.0074 19.6 5.2 31 7-37 6-36 (129)
186 3s21_A 3-oxoacyl-[ACP] synthas 20.1 1.5E+02 0.005 23.5 5.0 43 26-69 72-116 (345)
187 2ebd_A 3-oxoacyl-[acyl-carrier 20.1 1.2E+02 0.0042 23.2 4.5 46 23-69 51-98 (309)
No 1
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=100.00 E-value=1e-36 Score=271.66 Aligned_cols=166 Identities=42% Similarity=0.545 Sum_probs=157.5
Q ss_pred CceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCch
Q psy5548 6 GRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTC 85 (183)
Q Consensus 6 ~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~ 85 (183)
++.+|||++||++++++++++.++++++|+++++ ...+|+.|+||||+|++|.|+++|+++|+ ..+..+ .||+
T Consensus 296 ~~~~itr~~~e~l~~~~~~~i~~~v~~~L~~a~~-~~~~i~~VvLvGG~sriP~v~~~l~~~fg-~~~~~~-----~nPd 368 (605)
T 4b9q_A 296 MNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGL-SVSDIDDVILVGGQTRMPMVQKKVAEFFG-KEPRKD-----VNPD 368 (605)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTTHHHHHHHHHTTC-CGGGCSEEEEESGGGGSHHHHHHHHHHHT-SCCCSS-----SCTT
T ss_pred EEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHCcEEEEeCCccCchHHHHHHHHHhc-cCcCCC-----cChh
Confidence 3578999999999999999999999999999998 48999999999999999999999999995 666677 8999
Q ss_pred hHHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecC
Q psy5548 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGE 165 (183)
Q Consensus 86 eaVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe 165 (183)
+|||+|||++|+.+++. .+++.+.|++|+++|+++.+|.+.+|||+|+++|++++.+|++..|||+.+.|+|||||
T Consensus 369 eaVA~GAai~a~~l~~~----~~~~~l~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge 444 (605)
T 4b9q_A 369 EAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGE 444 (605)
T ss_dssp THHHHHHHHHHHHHHTS----SCSEEEECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESS
T ss_pred HHHHHhHHHHHHHhcCC----CCceEEEeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEecc
Confidence 99999999999999986 57889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeEEEEeC
Q psy5548 166 RAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 166 ~~~~~~n~~lG~~~l~g 182 (183)
+.++.+|+.||+|.|+|
T Consensus 445 ~~~~~~n~~lg~~~l~~ 461 (605)
T 4b9q_A 445 RKRAADNKSLGQFNLDG 461 (605)
T ss_dssp CSBGGGSEEEEEEEEEC
T ss_pred ccccccCCEeeEEEEeC
Confidence 99999999999999986
No 2
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=100.00 E-value=2.7e-35 Score=260.07 Aligned_cols=170 Identities=61% Similarity=0.756 Sum_probs=158.8
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++||++++++++++.++++++|+++++. ..+|+.|+||||+|++|.|++.|+++|++..+... .||++
T Consensus 294 ~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~a~~~-~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~-----~np~~ 367 (554)
T 1yuw_A 294 YTSITRARFEELNADLFRGTLDPVEKALRDAKLD-KSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS-----INPDE 367 (554)
T ss_dssp EEEEEHHHHHHHTHHHHHHTTHHHHHHHHHTTCC-GGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCC-----SCTTT
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhCcEEEEECCcccChHHHHHHHHHcCCCccccC-----CCchh
Confidence 4689999999999999999999999999999874 88999999999999999999999999976667677 89999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++...+.++++.+.|++|++||+++.+|.+.++|++|+++|++++.+|++..|+|+.+.|+||||++
T Consensus 368 aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~ 447 (554)
T 1yuw_A 368 AVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 447 (554)
T ss_dssp HHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCc
Confidence 99999999999998753345678889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|+.||+|.|+|
T Consensus 448 ~~~~~n~~lg~~~l~~ 463 (554)
T 1yuw_A 448 AMTKDNNLLGKFELTG 463 (554)
T ss_dssp SBGGGSEEEEEEEEEC
T ss_pred cccccCcEEEEEEEeC
Confidence 9999999999999986
No 3
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=100.00 E-value=2e-35 Score=263.32 Aligned_cols=165 Identities=42% Similarity=0.555 Sum_probs=155.5
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++||++++++++++.++++++|+++++ ...+|+.|+||||+|++|.|++.|+++|+ ..+... .||++
T Consensus 297 ~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~-~~~~i~~VvLvGG~srip~v~~~l~~~fg-~~~~~~-----~npd~ 369 (605)
T 2kho_A 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGL-SVSDIDDVILVGGQTRMPMVQKKVAEFFG-KEPRKD-----VNPDE 369 (605)
T ss_dssp EEEEEHHHHHTTCCSTTGGGTSHHHHHHHTTTC-CTTTCSEEEEESGGGGSHHHHHHHHHHHS-SCCBCS-----SCTTT
T ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhhCceEEEECCcccChHHHHHHHHhcC-CCcCcC-----CCcch
Confidence 469999999999999999999999999999997 48899999999999999999999999995 556677 99999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. ++++.+.|++|+++|+++.+|.+.++|++|+++|++++.+|++..|+|+.+.|+||||++
T Consensus 370 aVA~GAa~~a~~l~~~----~~~~~l~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~ 445 (605)
T 2kho_A 370 AVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGER 445 (605)
T ss_dssp HHHHHHHHHHTTTTTS----CCCCCCSBCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSC
T ss_pred HHHHHHHHHHHHhcCC----ccCceEEeeeeeeccccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccC
Confidence 9999999999998875 567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
.++.+|+.||+|.|+|
T Consensus 446 ~~~~~n~~lg~~~l~~ 461 (605)
T 2kho_A 446 KRAADNKSLGQFNLDG 461 (605)
T ss_dssp SBGGGSEEEEEEEEEC
T ss_pred cccccCcEEeEEEecC
Confidence 9999999999999986
No 4
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=100.00 E-value=1.5e-34 Score=252.91 Aligned_cols=165 Identities=38% Similarity=0.504 Sum_probs=155.0
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++|+++++++++++.++++++|+++++ ...+|+.|+||||+|++|.|++.|++.|+ ..+... .||++
T Consensus 266 ~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~-~~~~i~~VvLvGG~s~~p~v~~~l~~~f~-~~~~~~-----~~p~~ 338 (509)
T 2v7y_A 266 EMTLTRAKFEELSAHLVERTMGPVRQALQDAGL-TPADIDKVILVGGSTRIPAVQEAIKRELG-KEPHKG-----VNPDE 338 (509)
T ss_dssp EEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTC-CGGGCSEEEEESGGGGCHHHHHHHHHHHS-SCCBCC-----SCTTT
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHCcEEEEECCcccChHHHHHHHHHhC-CCcCcC-----CCchh
Confidence 458999999999999999999999999999987 47899999999999999999999999995 556667 89999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCC
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGER 166 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~ 166 (183)
|||+|||++|+.+++. ++++.+.|++|+++|+++.+|.+.++|++|+++|++++..|++..|+|+.+.|+||||++
T Consensus 339 aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~slgi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~ 414 (509)
T 2v7y_A 339 VVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGER 414 (509)
T ss_dssp HHHHHHHHHHHHHHTC----CCCCCCCCBCSSEEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESS
T ss_pred hhHhhHHHHHHHhcCC----ccCceEEEeeccccceeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCc
Confidence 9999999999999875 467889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeEEEEeC
Q psy5548 167 AMTKDNNLLGKFKMEK 182 (183)
Q Consensus 167 ~~~~~n~~lG~~~l~g 182 (183)
..+.+|+.||+|.|+|
T Consensus 415 ~~~~~~~~lg~~~l~~ 430 (509)
T 2v7y_A 415 PMAADNKSLGRFQLTG 430 (509)
T ss_dssp SBGGGSEEEEEEEEEC
T ss_pred cccccCcEEEEEEEeC
Confidence 9999999999999986
No 5
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.98 E-value=1.9e-32 Score=246.56 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=146.9
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++||++|+++++++.++++++|+++++. .++|+.|+||||+|+||.|++.|+++|+ ..+... .||++
T Consensus 298 ~~~itr~~fe~l~~~l~~~i~~~i~~~L~~a~l~-~~~I~~VvLvGGssriP~v~~~l~~~fg-~~~~~~-----~nPde 370 (675)
T 3d2f_A 298 SSQLSREELEELVKPLLERVTEPVTKALAQAKLS-AEEVDFVEIIGGTTRIPTLKQSISEAFG-KPLSTT-----LNQDE 370 (675)
T ss_dssp EEEEEHHHHHHHTHHHHTTTTHHHHHHHHHHTCC-GGGCCEEEEESGGGGSHHHHHHHHHHHT-SCEECC-----SCTTT
T ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hhhCcEEEEECCCccChHHHHHHHHhcC-CCcccc-----CCcch
Confidence 5789999999999999999999999999999974 8899999999999999999999999995 556667 89999
Q ss_pred HHhhhHHHHHHHHhCCCccccceeEEEeecceeeeEEEeCC----EEEEEEeCCCCcCcceEEEEEcccCCCccEEEEE-
Q psy5548 87 AVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGG----VMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQV- 161 (183)
Q Consensus 87 aVA~GAa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~g----~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i- 161 (183)
|||+|||++|+.+++. ++++++.+.|++|++||+++.++ .+.+||++|+++|++++.+|++..++ .+.+
T Consensus 371 aVA~GAa~~a~~ls~~--~~v~~~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~----~~~~~ 444 (675)
T 3d2f_A 371 AIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDF----SMAAS 444 (675)
T ss_dssp HHHHHHHHHHHHTCSS--CCCCCCEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCE----EEEEE
T ss_pred HHHHHHHHHHHHhCCC--CcccceEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCc----eEEEE
Confidence 9999999999999875 34678899999999999999876 49999999999999999999987554 3444
Q ss_pred EecCCCCCC-CCceeeEEEEeC
Q psy5548 162 YEGERAMTK-DNNLLGKFKMEK 182 (183)
Q Consensus 162 ~eGe~~~~~-~n~~lG~~~l~g 182 (183)
|||++.++. +|+.||+|.|+|
T Consensus 445 ~~ge~~~~~~~n~~lg~f~l~g 466 (675)
T 3d2f_A 445 YTDITQLPPNTPEQIANWEITG 466 (675)
T ss_dssp ESCGGGSCTTCCSEEEEEEEEC
T ss_pred EcCCcccccccCceeeEEEecC
Confidence 779999887 999999999986
No 6
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=99.74 E-value=5.8e-18 Score=126.12 Aligned_cols=71 Identities=73% Similarity=1.072 Sum_probs=67.7
Q ss_pred EEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 112 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 112 ~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
+.|++|++||+++.+|.|.+|||||+++|++++.+|++..|||+.+.|+||||++.++.+|.+||+|.|.|
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~g 72 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSG 72 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEEC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999986
No 7
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=99.74 E-value=5.9e-18 Score=125.98 Aligned_cols=71 Identities=59% Similarity=0.888 Sum_probs=67.7
Q ss_pred EEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 112 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 112 ~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
+.|++|++||+++.+|.|.+|||||+++|++++.+|++..|||+.+.|+||||++.++.+|.+||+|.|.|
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~g 72 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVG 72 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEEC
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999986
No 8
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=99.73 E-value=6.4e-18 Score=125.96 Aligned_cols=71 Identities=69% Similarity=1.025 Sum_probs=68.4
Q ss_pred EEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 112 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 112 ~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
+.|++|++||+++.+|.|.+|||||+++|++++.+|++..|||+.+.|+||||++.++.+|.+||+|.|.|
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~g 72 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTG 72 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECC
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999986
No 9
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.72 E-value=1e-17 Score=141.64 Aligned_cols=89 Identities=33% Similarity=0.308 Sum_probs=82.1
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++|+++++++++++.+++.+.|+++++. ..+|+.|+|+||+|++|.|++.|++.|++..+... .||++
T Consensus 315 ~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~-----~~p~~ 388 (404)
T 3i33_A 315 YTSITRARFEELNADLFRGTLEPVEKALRDAKLD-KGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKS-----INPDE 388 (404)
T ss_dssp EEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCC-GGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCS-----SCTTT
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCC-----cCHHH
Confidence 4689999999999999999999999999999874 78999999999999999999999999976777677 89999
Q ss_pred HHhhhHHHHHHHHhC
Q psy5548 87 AVAYGAAVQAAILHG 101 (183)
Q Consensus 87 aVA~GAa~~a~~l~~ 101 (183)
|||+|||++|+.+++
T Consensus 389 ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 389 AVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999875
No 10
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=99.72 E-value=1.2e-17 Score=131.42 Aligned_cols=72 Identities=63% Similarity=0.926 Sum_probs=69.7
Q ss_pred EEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 111 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 111 ~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
.+.|++|+|||+++.+|.|.+||||||++|++++.+|++..|||+.+.|+||||++.++.+|.+||+|.|.|
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~g 73 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDG 73 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEEC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999986
No 11
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=99.71 E-value=5.5e-18 Score=123.93 Aligned_cols=76 Identities=55% Similarity=0.827 Sum_probs=67.5
Q ss_pred cceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 107 VQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 107 ~~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
++++.+.|++|++||+++.+|.+.+||+||+++|++++.+|++..|||+.+.|+|||||+.++.+|++||+|.|.|
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~g 89 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDG 89 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeC
Confidence 4577899999999999999999999999999999999999999999999999999999999999999999999976
No 12
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.71 E-value=2.1e-17 Score=140.21 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=80.9
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc-cc------ccCCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ-AN------SLVGTK 79 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~-~~------~~~~~~ 79 (183)
+.+|||++||++++++++++.++++++|+++++. ..+|+.|+|+||+|++|.|++.|++.|+.. .+ ...
T Consensus 308 ~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~--- 383 (409)
T 4gni_A 308 ASTINRLRYETIARTVFEGFNRLVESAVKKAGLD-PLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSA--- 383 (409)
T ss_dssp EEEEEHHHHHHHTHHHHHHHHHHHHHHHHHTTCC-GGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTC---
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCC---
Confidence 5689999999999999999999999999999874 789999999999999999999999999754 23 456
Q ss_pred ccCCchhHHhhhHHHHHHHHhC
Q psy5548 80 TRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 80 ~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.||++|||+|||++|+....
T Consensus 384 --~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 384 --LNPSELQARGAALQASLIQE 403 (409)
T ss_dssp --CCTTTHHHHHHHHHHHHHHC
T ss_pred --cCHHHHHHHHHHHHhhhhhh
Confidence 89999999999999998764
No 13
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=126.96 Aligned_cols=75 Identities=57% Similarity=0.817 Sum_probs=67.6
Q ss_pred ceeEEEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 108 QDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 108 ~~~~~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
..+.+.|++|++||+++.+|.+.+|||||+++|++++.+|++..|||+.+.|.||||++.++.+|.+||+|.|.|
T Consensus 18 ~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~g 92 (182)
T 3n8e_A 18 LYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIG 92 (182)
T ss_dssp ------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECC
T ss_pred CCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcC
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999986
No 14
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=99.70 E-value=5.2e-17 Score=120.91 Aligned_cols=71 Identities=58% Similarity=0.866 Sum_probs=68.2
Q ss_pred EEeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 112 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 112 ~~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
+.|++|++||+++.+|.+.+||++|+++|++++.+|++..|||+.+.|+||||++.++.+|.+||+|.|.|
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~g 72 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTG 72 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECC
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999986
No 15
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.69 E-value=3.8e-17 Score=137.40 Aligned_cols=88 Identities=26% Similarity=0.248 Sum_probs=81.4
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..++||++|+++++++++++.+++.+.|+++++. ..+|+.|+|+||+|++|.|++.|++.|++..+... .||++
T Consensus 307 ~~~i~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~-----~~p~~ 380 (394)
T 3qfu_A 307 SETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLE-KKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKG-----INPDE 380 (394)
T ss_dssp EEEEEHHHHHHHHHHHHHHTHHHHHHHHHHHTCC-GGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCC-----SCTTT
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCC-----cCHHH
Confidence 4689999999999999999999999999999874 78999999999999999999999999976677677 89999
Q ss_pred HHhhhHHHHHHHHh
Q psy5548 87 AVAYGAAVQAAILH 100 (183)
Q Consensus 87 aVA~GAa~~a~~l~ 100 (183)
|||+|||++|+.++
T Consensus 381 ava~Gaa~~a~~ls 394 (394)
T 3qfu_A 381 AVAYGAAVQAGVLS 394 (394)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998864
No 16
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.65 E-value=2.3e-16 Score=132.54 Aligned_cols=86 Identities=24% Similarity=0.223 Sum_probs=78.6
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE 86 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e 86 (183)
..+|||++|+++++++++++.+++.++|+++++ ...+|+.|+|+||+|++|.|++.|++.|+ ..+... .||++
T Consensus 297 ~~~it~~~~~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~IvL~GG~s~~p~l~~~l~~~~~-~~v~~~-----~~p~~ 369 (383)
T 1dkg_D 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGL-SVSDIDDVILVGGQTRMPMVQKKVAEFFG-KEPRKD-----VNPDE 369 (383)
T ss_dssp EEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTC-CTTTCCEEEEESGGGGSHHHHHHHHHHHS-SCCBCS-----SCTTT
T ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHhhCCEEEEecCccccHHHHHHHHHHhC-CCCCCC-----cChHH
Confidence 358999999999999999999999999999987 47899999999999999999999999995 456566 89999
Q ss_pred HHhhhHHHHHHHH
Q psy5548 87 AVAYGAAVQAAIL 99 (183)
Q Consensus 87 aVA~GAa~~a~~l 99 (183)
|||+|||++|+.+
T Consensus 370 ava~Gaa~~a~~l 382 (383)
T 1dkg_D 370 AVAIGAAVQGGVL 382 (383)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 17
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=99.62 E-value=9.7e-16 Score=121.14 Aligned_cols=70 Identities=46% Similarity=0.786 Sum_probs=67.7
Q ss_pred EeecceeeeEEEeCCEEEEEEeCCCCcCcceEEEEEcccCCCccEEEEEEecCCCCCCCCceeeEEEEeC
Q psy5548 113 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182 (183)
Q Consensus 113 ~d~~~~~igi~~~~g~~~~ii~~~t~lP~~~~~~~~~~~d~q~~i~i~i~eGe~~~~~~n~~lG~~~l~g 182 (183)
.|++|++||+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.|+||||++.++.+|.+||+|.|.|
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~g 70 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRG 70 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeC
Confidence 3899999999999999999999999999999999999999999999999999999999999999999986
No 18
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.39 E-value=6.7e-14 Score=115.91 Aligned_cols=88 Identities=16% Similarity=0.048 Sum_probs=74.5
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC-CCCCC-CcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAG-REGRF-EDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~-~~~~i-~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
..+|||++|+++++++++++.+.+.+.|++++.. ..+.+ +.|+|+||+|++|.+++.|++.|+ .++... .||
T Consensus 238 ~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~-~~v~~~-----~~p 311 (344)
T 1jce_A 238 KLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG-ISVIRS-----EEP 311 (344)
T ss_dssp EEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS-SCEEEC-----SST
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHC-CCcccc-----CCh
Confidence 4689999999999999999999999999987520 01234 689999999999999999999995 445555 799
Q ss_pred hhHHhhhHHHHHHHHh
Q psy5548 85 CEAVAYGAAVQAAILH 100 (183)
Q Consensus 85 ~eaVA~GAa~~a~~l~ 100 (183)
+++||+||+++|..++
T Consensus 312 ~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 312 LTAVAKGAGMVLDKVN 327 (344)
T ss_dssp TTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHHhChH
Confidence 9999999999987544
No 19
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.11 E-value=8.8e-11 Score=93.88 Aligned_cols=75 Identities=8% Similarity=0.027 Sum_probs=66.2
Q ss_pred cHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhh
Q psy5548 11 ERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAY 90 (183)
Q Consensus 11 tR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~ 90 (183)
++++|+++++++++++.+.+.+.++.++ +++.|+|+||++++|.+++.|++.|+ .++... .||++++|+
T Consensus 198 ~~~~~~~~~~~~~~~i~~~i~~~l~~~~-----~~~~ivL~GG~a~~~~l~~~l~~~l~-~~v~~~-----~~p~~a~a~ 266 (272)
T 3h1q_A 198 RHREIMRVVRPVIEKMALIVKEVIKNYD-----QTLPVYVVGGTAYLTGFSEEFSRFLG-KEVQVP-----IHPLLVTPL 266 (272)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTSC-----SSCCEEEESGGGGSTTHHHHHHHHHS-SCCBCC-----SSGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCccchhhHHHHHHHHhC-CCcccc-----CChHHHHHH
Confidence 6788999999999999999999998653 47899999999999999999999995 555556 799999999
Q ss_pred hHHHHH
Q psy5548 91 GAAVQA 96 (183)
Q Consensus 91 GAa~~a 96 (183)
|||++|
T Consensus 267 Gaal~a 272 (272)
T 3h1q_A 267 GIALFG 272 (272)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 999864
No 20
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=98.89 E-value=3.8e-09 Score=84.77 Aligned_cols=75 Identities=13% Similarity=-0.061 Sum_probs=58.7
Q ss_pred HHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 15 LASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 15 fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
.+++++.+.+.+.+.+.....+ ..+++.|+|+||++++|.||+.|++.|+ .++... .||++++|+|||+
T Consensus 182 ~~di~a~~~~~v~~~l~~~~~~-----~~~~~~vvl~GGva~n~~lr~~l~~~~g-~~~~~p-----~~p~~~~A~GAAl 250 (276)
T 4ehu_A 182 IEDIVAGIHTSVAKRVSSLVKR-----IGVQRNVVMVGGVARNSGIVRAMAREIN-TEIIVP-----DIPQLTGALGAAL 250 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HCCCSSEEEESGGGGCHHHHHHHHHHHT-SCEECC-----SSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cccCCeEEEecCccchHHHHHHHHHHHC-CCeeeC-----CCcchHHHHHHHH
Confidence 3567777666665555554443 3457899999999999999999999994 566666 8999999999999
Q ss_pred HHHHHh
Q psy5548 95 QAAILH 100 (183)
Q Consensus 95 ~a~~l~ 100 (183)
+|....
T Consensus 251 ~A~~~~ 256 (276)
T 4ehu_A 251 YAFDEA 256 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997554
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=98.84 E-value=2.2e-09 Score=91.67 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=68.8
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCC-----CCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCC-----
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSNPAG-----REGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVG----- 77 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~----- 77 (183)
.+++|++|++++++.++++.+.+.+.|+.++.. ....++.|+|+||+|++|.+++.+++.|+- ++....
T Consensus 287 ~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~-~vri~~~~~~~ 365 (419)
T 4a2a_A 287 KTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS-PVRTGCYANSD 365 (419)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS-CEEECCGGGSS
T ss_pred eEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC-CeEEEecCCCC
Confidence 579999999999999999999999999998752 145689999999999999999999999953 321110
Q ss_pred C-cc------cCCchhHHhhhHHHHHHHH
Q psy5548 78 T-KT------RHDTCEAVAYGAAVQAAIL 99 (183)
Q Consensus 78 ~-~~------~~~p~eaVA~GAa~~a~~l 99 (183)
. .. .-+|.-+.|.|.++++...
T Consensus 366 p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 366 RPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp SCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred chhccCcccccCCchHHHHHHHHHHHhhc
Confidence 0 00 1388999999999887553
No 22
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.67 E-value=1.8e-08 Score=83.73 Aligned_cols=78 Identities=14% Similarity=-0.017 Sum_probs=65.9
Q ss_pred eecHHHH-HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCccc-ccCCCcccCCchh
Q psy5548 9 KAERQDL-ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQAN-SLVGTKTRHDTCE 86 (183)
Q Consensus 9 ~itR~~f-e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~-~~~~~~~~~~p~e 86 (183)
.++++++ +++++++++++.+.++++|+++ .++++.|+|+||++++ +++.+++.|+...+ ... .||++
T Consensus 264 ~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~----~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~-----~~P~~ 332 (346)
T 2fsj_A 264 QVGGPEVSGPILEDLANRIIENIRLNLRGE----VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP-----EDLQF 332 (346)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHHHHHHGGG----GGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCT-----TTTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccC-----CCcHH
Confidence 5679999 9999999999999999999875 3578999999999999 99999999963222 114 69999
Q ss_pred HHhhhHHHHHH
Q psy5548 87 AVAYGAAVQAA 97 (183)
Q Consensus 87 aVA~GAa~~a~ 97 (183)
|+|+|+..++.
T Consensus 333 ava~G~~~~~~ 343 (346)
T 2fsj_A 333 ANALGYRDAAE 343 (346)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 23
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=98.66 E-value=1e-08 Score=85.50 Aligned_cols=61 Identities=11% Similarity=-0.075 Sum_probs=48.2
Q ss_pred eeecHHHHHHhhhhHHHhHHHHHHHHHhhC--CCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 8 RKAERQDLASAGEKPRSSTSEIVIKWLDSN--PAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~~~~~~~~~~~l~~~--~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.+++|++|++++++.++++.+.+.+.|+.. +. ....++.|+|+||+|++|.+++.+++.|+
T Consensus 269 ~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~-~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 269 ERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQL-EEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 378999999999999999999999999853 33 25689999999999999999999999995
No 24
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=98.56 E-value=2.3e-07 Score=76.04 Aligned_cols=73 Identities=8% Similarity=-0.027 Sum_probs=54.4
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc--ccccCCCcccCCchhHHh
Q psy5548 12 RQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--ANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 12 R~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--~~~~~~~~~~~~p~eaVA 89 (183)
++++.+++++.++++.+.+.+.+++ ..+++.|+|+||++++ +++.|++.|+.. .+... .||++|+|
T Consensus 245 ~~~~~~~i~~~~~~~~~~i~~~i~~-----~~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~-----~~P~~a~A 312 (320)
T 2zgy_A 245 ISIVTEAMNEALRKLEQRVLNTLNE-----FSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKT-----NNSQYDLV 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-----CCCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECC-----SCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeC-----CCcHHHHH
Confidence 3455555566566655555555554 2568999999999998 999999999642 34455 79999999
Q ss_pred hhHHHHH
Q psy5548 90 YGAAVQA 96 (183)
Q Consensus 90 ~GAa~~a 96 (183)
+||++++
T Consensus 313 ~G~~~~~ 319 (320)
T 2zgy_A 313 NGMYLIG 319 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999875
No 25
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=98.29 E-value=1.5e-07 Score=78.71 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=63.2
Q ss_pred eeecHHHH---HHhhhhH-----HHhHHHHHHHHHhhCCC-CCCCCCCcEEeecCccchHHHHHHHHhhcCC-------c
Q psy5548 8 RKAERQDL---ASAGEKP-----RSSTSEIVIKWLDSNPA-GREGRFEDKQKAVGSHLYPIITKLYQAWLVH-------Q 71 (183)
Q Consensus 8 ~~itR~~f---e~l~~~l-----~~~~~~~~~~~l~~~~~-~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~-------~ 71 (183)
.++++++| |.+..|. ...+.+++.+.|+++.. .....++.|+|+||+|++|.+++.|++.+.. .
T Consensus 248 i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v 327 (375)
T 2fxu_A 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKI 327 (375)
T ss_dssp EEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCC
T ss_pred EEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeE
Confidence 57888888 4454543 35688888999887631 0134568899999999999999999987742 1
Q ss_pred ccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 72 ANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 72 ~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
++... .||+.++++||+++|.
T Consensus 328 ~v~~~-----~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 328 KIIAP-----PERKYSVWIGGSILAS 348 (375)
T ss_dssp CEECC-----TTTTSHHHHHHHHHHH
T ss_pred EEEcC-----CCCCccEEcchHHhhC
Confidence 12233 6899999999999997
No 26
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=98.08 E-value=1.3e-06 Score=73.88 Aligned_cols=87 Identities=16% Similarity=0.098 Sum_probs=63.6
Q ss_pred ceeecHHHH---HHhhhhH------HHhHHHHHHHHHhhCCC-CCCCCCCcEEeecCccchHHHHHHHHhhcCCcc----
Q psy5548 7 RRKAERQDL---ASAGEKP------RSSTSEIVIKWLDSNPA-GREGRFEDKQKAVGSHLYPIITKLYQAWLVHQA---- 72 (183)
Q Consensus 7 ~~~itR~~f---e~l~~~l------~~~~~~~~~~~l~~~~~-~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~---- 72 (183)
..++++++| |.+..|. +..+.+++.+.|+++.. ...+.++.|+|+||+|++|.+++.|++.+....
T Consensus 268 ~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~ 347 (418)
T 1k8k_A 268 SIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARL 347 (418)
T ss_dssp EEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhcccc
Confidence 357899999 6665553 25688999999987642 125667899999999999999999987663210
Q ss_pred -------------------cccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 73 -------------------NSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 73 -------------------~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+... .+|..++.+||+++|..
T Consensus 348 ~~~~~~~~~~~~p~~~~v~v~~~-----~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 348 KLSEELSGGRLKPKPIDVQVITH-----HMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHC----CCCCCCCCEECC-----TTCTTHHHHHHHHHTTS
T ss_pred ccccccccccCCCCceeEEEeCC-----CccccceeHhHHHHHcC
Confidence 1111 36779999999999863
No 27
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=97.87 E-value=2.3e-05 Score=65.29 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=58.6
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHH--HHHHHHhhcCCcccccCCCcccCCchhHHhhh
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPI--ITKLYQAWLVHQANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~--V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~G 91 (183)
.+++.++++++++.+.+++++.+ .+.++.|+|+||++.++. +++.+++.|+. . .||..|+|+|
T Consensus 265 ~i~~a~~~~~~~I~~~i~~~l~~-----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~-----~-----~~p~~anA~G 329 (355)
T 3js6_A 265 EFYKEQDSLIEEVMSNFEITVGN-----INSIDRIIVTGGGANIHFDSLSHYYSDVFEK-----A-----DDSQFSNVRG 329 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-----TTSCSEEEEESTTHHHHHHHHHHHSSSCEEC-----C-----SSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-----hhhccEEEEECcchhcchhhHHHHHHHHCCC-----C-----CCcHHHHHHH
Confidence 45666777777777777777764 356899999999999998 88999888842 1 4999999999
Q ss_pred HHHHHHHHhC
Q psy5548 92 AAVQAAILHG 101 (183)
Q Consensus 92 Aa~~a~~l~~ 101 (183)
+..++..+.+
T Consensus 330 ~~~~~~~~~~ 339 (355)
T 3js6_A 330 YEKLGELLKN 339 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 28
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=97.72 E-value=0.00015 Score=59.59 Aligned_cols=78 Identities=8% Similarity=-0.018 Sum_probs=58.9
Q ss_pred ecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHh
Q psy5548 10 AERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 10 itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA 89 (183)
++.+..++.++++++++.+.+++. . . .++.++.|+|+||++.+ +.+.+++.|+. .+... -||..|+|
T Consensus 249 ~~~~~i~~~~~e~~~~I~~~i~~~-~---~-~~~~~~~IvltGGGA~l--~~~~l~~~~~~-~v~v~-----~~P~~a~a 315 (329)
T 4apw_A 249 ESSTVIKKVKEKFLKDAIKLIEKR-G---F-KLDQLDSLIFIGGTTQK--LKEQISKTYPN-NSIIT-----NNSQWTTC 315 (329)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHH-T---C-CTTSCSEEEEESTTHHH--HHHHHHHHSTT-CEECC-----SSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-C---C-CHHHccEEEEECChHHH--HHHHHHHHcCC-CCEec-----CCChhhHH
Confidence 445667777777777777776666 3 2 35668999999999998 56999999962 34445 79999999
Q ss_pred hhHHHHHHHHh
Q psy5548 90 YGAAVQAAILH 100 (183)
Q Consensus 90 ~GAa~~a~~l~ 100 (183)
+|+..++....
T Consensus 316 ~G~~~~~~~k~ 326 (329)
T 4apw_A 316 EGLYKVAVAKY 326 (329)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99998886654
No 29
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.33 E-value=0.00077 Score=53.81 Aligned_cols=73 Identities=15% Similarity=-0.113 Sum_probs=50.1
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
+++++.+++-+..-+.++++..+ -.+.|+++||.++.|.+++.+++.++ .++... .+++.+.|+|||+.
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~-----~~~~i~~~GG~a~n~~~~~~~~~~lg-~~v~~p-----~~~~~~~AlGAAl~ 253 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVG-----IVKDVVMTGGVAQNYGVRGALEEGLG-VEIKTS-----PLAQYNGALGAALY 253 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-----CCSSEEEESGGGGCHHHHHHHHHHHC-SCEECC-----GGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEEeCccccCHHHHHHHHHHHC-CCeEeC-----CCcchHhHHHHHHH
Confidence 33444444444444444444321 13689999999999999999999995 445444 46667899999999
Q ss_pred HHHH
Q psy5548 96 AAIL 99 (183)
Q Consensus 96 a~~l 99 (183)
|...
T Consensus 254 A~~~ 257 (270)
T 1hux_A 254 AYKK 257 (270)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 30
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=97.13 E-value=0.00014 Score=61.19 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred eeecHHHHHHhhhhHH---------HhHHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc------
Q psy5548 8 RKAERQDLASAGEKPR---------SSTSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ------ 71 (183)
Q Consensus 8 ~~itR~~fe~l~~~l~---------~~~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~------ 71 (183)
.+|++++|+ +.+-|+ ..+.+++.+.|.++... ..+-.+.|+|+||+|.+|.+.+.|++.+...
T Consensus 252 i~i~~erf~-~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~ 330 (394)
T 1k8k_B 252 IKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVL 330 (394)
T ss_dssp EEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTC
T ss_pred EEECchhhc-ChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhc
Confidence 578888884 233332 34778888888877421 1344578999999999999999998876321
Q ss_pred ----------ccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 72 ----------ANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 72 ----------~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
++... ...+|..++.+||+++|..
T Consensus 331 ~~~~~~p~~~~v~v~---~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 331 KGDVEKLSKFKIRIE---DPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp SSCCCTTCCCCC-------------------------
T ss_pred ccccCCCCceEEEEe---cCCCcceeEEhhhHHhhCC
Confidence 11110 0146778999999998864
No 31
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=96.96 E-value=0.0027 Score=55.26 Aligned_cols=80 Identities=25% Similarity=0.096 Sum_probs=54.4
Q ss_pred cHHHHHH-hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHh
Q psy5548 11 ERQDLAS-AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 11 tR~~fe~-l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA 89 (183)
||.++-+ +++-+.-.+.+.++ .|++.+ ..++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l~-~l~~~g----~~~~~i~~~GGgaks~~~~Qi~ADvlg-~pV~~------~~~~e~~a 462 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCLE-LIRSLG----ASITRILLIGGGAKSEAIRTLAPSILG-MDVTR------PATDEYVA 462 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHTT----CCCCEEEEESGGGGCHHHHHHHHHHHT-SCEEE------ECCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcC----CCCCEEEEECchhcCHHHHHHHHHHhC-CceEe------cCCcccHH
Confidence 5555433 22223333444433 334444 247899999999999999999999995 55543 36678999
Q ss_pred hhHHHHHHHHhCC
Q psy5548 90 YGAAVQAAILHGD 102 (183)
Q Consensus 90 ~GAa~~a~~l~~~ 102 (183)
+|||+.|+.-.+.
T Consensus 463 lGAA~lA~~a~G~ 475 (515)
T 3i8b_A 463 IGAARQAAWVLSG 475 (515)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999876553
No 32
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.92 E-value=0.0021 Score=56.29 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=57.0
Q ss_pred eecHHHHHHhhhhHHHh----HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc
Q psy5548 9 KAERQDLASAGEKPRSS----TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT 84 (183)
Q Consensus 9 ~itR~~fe~l~~~l~~~----~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p 84 (183)
.-||.++-++.+-+++- +.+.++ .|++.+ ..++.|.++||.++-|.+.+++.+.|+ .++.. ...
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e-~l~~~g----~~~~~i~~~GG~aks~~~~Qi~ADv~g-~pV~~------~~~ 475 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIE-TMNQNG----YNIDTMMASGGGTKNPIFVQEHANATG-CAMLL------PEE 475 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTT----CCCCEEEEESGGGGCHHHHHHHHHHHC-CEEEE------ESC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC----CCCCEEEEeCccccCHHHHHHHHHhhC-CeEEe------cCC
Confidence 34677764334444433 333333 334443 358899999999999999999999995 55543 356
Q ss_pred hhHHhhhHHHHHHHHhCC
Q psy5548 85 CEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 85 ~eaVA~GAa~~a~~l~~~ 102 (183)
.|+.|+|||+.|+.-.+.
T Consensus 476 ~e~~alGAA~lA~~a~G~ 493 (554)
T 3l0q_A 476 SEAMLLGSAMMGTVAAGV 493 (554)
T ss_dssp SCHHHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHcCC
Confidence 789999999999876654
No 33
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=96.85 E-value=0.0039 Score=54.41 Aligned_cols=77 Identities=10% Similarity=-0.112 Sum_probs=54.0
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
++.+-+++-+.--++..++..+. ....++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|+|||+.|
T Consensus 408 ~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA 479 (538)
T 4bc3_A 408 VEVRALIEGQFMAKRIHAEGLGY-RVMSKTKILATGGASHNREILQVLADVFD-APVYV------IDTANSACVGSAYRA 479 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-CCCTTCCEEEEEGGGGCHHHHHHHHHHHT-SCEEE------CCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cCCCCCeEEEEcchhcCHHHHHHHHHHhC-CceEe------cCCCCchHHHHHHHH
Confidence 34444444444334444444332 13467899999999999999999999995 55543 467889999999999
Q ss_pred HHHhC
Q psy5548 97 AILHG 101 (183)
Q Consensus 97 ~~l~~ 101 (183)
+.-.+
T Consensus 480 ~~a~G 484 (538)
T 4bc3_A 480 FHGLA 484 (538)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 86554
No 34
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=96.76 E-value=0.0053 Score=53.15 Aligned_cols=52 Identities=10% Similarity=-0.084 Sum_probs=43.8
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|+|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~~~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA~~a~G~ 444 (504)
T 3ll3_A 393 KPVAINATGGFLKSDFVRQLCANIFN-VPIVT------MKEQQSGTLAAMFLARQALGL 444 (504)
T ss_dssp CCSEEEEESGGGCSHHHHHHHHHHHT-SCEEE------ESCSCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCchhcCHHHHHHHHHhhC-CeEEe------cCCCCchhHHHHHHHHHHcCc
Confidence 58899999999999999999999995 55543 356789999999999876654
No 35
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=96.69 E-value=0.0047 Score=53.72 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
+.+.++.+-+..+. .++.|.++||.++-|.+.+++.+.|+ .++.. ....|+.|+|||+.|+.-.|.
T Consensus 388 ~r~~le~l~~~~g~----~~~~i~v~GGgaks~~~~Qi~ADvlg-~pV~~------~~~~E~~alGAA~lA~~a~G~ 453 (526)
T 3ezw_A 388 TRDVLEAMQADSGI----RLHALRVDGGAVANNFLMQFQSDILG-TRVER------PEVREVTALGAAYLAGLAVGF 453 (526)
T ss_dssp HHHHHHHHHHHHCC----CCSEEEEESGGGGCHHHHHHHHHHHT-SEEEE------ESCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCC----CCCEEEEECchhhCHHHHHHHHHHHC-CEEEe------CCCCchHHHHHHHHHHHHhCC
Confidence 44444444344443 58899999999999999999999995 55543 356789999999999887664
No 36
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=96.67 E-value=0.0045 Score=53.41 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=42.8
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.++-|.+.+++.+.++ .++.. ..+.|+.|+|||+.|+.-.+
T Consensus 393 ~~~~i~~~GG~a~s~~~~Qi~Adv~g-~pV~~------~~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 393 QIKELRVDGGATANDFLMQFQADILN-RKVIR------PVVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp CCCCEEEESGGGGCHHHHHHHHHHHT-SCEEE------ESCSCHHHHHHHHHHHHHTT
T ss_pred CcceEEEeCccccCHHHHHHHHhhcC-CeEEE------cCCCcchHHHHHHHHHHHhC
Confidence 67899999999999999999999995 55543 35567999999999987665
No 37
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=96.66 E-value=0.0052 Score=54.05 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCCcEEeecCcc-chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSH-LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss-~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|.++||.+ +-|...+++.+.|+ .++.. ..+.|+.|+|||+.|+.-.+
T Consensus 439 ~~~~i~~~GGga~ks~~~~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA~~a~G 490 (572)
T 3jvp_A 439 EVHELYACGGLPQKNHLLMQIFADVTN-REIKV------AASKQTPALGAAMFASVAAG 490 (572)
T ss_dssp CEEEEEEESSHHHHCHHHHHHHHHHHT-SCEEE------BCCSSHHHHHHHHHHHHHHC
T ss_pred CcCEEEEEcCchhhCHHHHHHHHHHHC-CeeEe------cCCCccHHHHHHHHHHHhcC
Confidence 588999999999 99999999999995 55533 46688999999999987666
No 38
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=96.59 E-value=0.0078 Score=52.00 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=54.7
Q ss_pred cHHHHHH-hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHh
Q psy5548 11 ERQDLAS-AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 11 tR~~fe~-l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA 89 (183)
+|.++-+ +++-+.-.+.+.++.+-+..+. .++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|
T Consensus 374 ~~~~l~RAvlEgia~~~~~~~~~l~~~~g~----~~~~i~~~GG~aks~~~~Qi~Adv~g-~pV~~------~~~~e~~a 442 (501)
T 3g25_A 374 EKEHFIRATLESLCYQTRDVMEAMSKDSGI----DVQSLRVDGGAVKNNFIMQFQADIVN-TSVER------PEIQETTA 442 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----CCSEEEEESGGGGCHHHHHHHHHHHT-SEEEE------ESCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCcEEEEecchhcCHHHHHHHHHHhC-CceEe------cCCCcchH
Confidence 4555432 2222333344444433333442 47899999999999999999999995 55533 35678999
Q ss_pred hhHHHHHHHHhCC
Q psy5548 90 YGAAVQAAILHGD 102 (183)
Q Consensus 90 ~GAa~~a~~l~~~ 102 (183)
+|||+.|+.-.+.
T Consensus 443 lGaA~la~~a~G~ 455 (501)
T 3g25_A 443 LGAAFLAGLAVGF 455 (501)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCc
Confidence 9999999876654
No 39
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=96.49 E-value=0.006 Score=52.60 Aligned_cols=80 Identities=21% Similarity=0.194 Sum_probs=54.2
Q ss_pred cHHHHHH-hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHh
Q psy5548 11 ERQDLAS-AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 11 tR~~fe~-l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA 89 (183)
+|.++-+ +++-+.-.+...++.+-+..+ ..++.|.++||.++-|.+.+++.+.++ .++.. ..+.|+.|
T Consensus 368 ~~~~~~rAvlEgia~~~~~~~~~l~~~~g----~~~~~i~~~GG~a~n~~~~q~~Adv~g-~pV~~------~~~~e~~a 436 (495)
T 2dpn_A 368 SRAHLARAALEGVAFQVRDVVLAMEEEAG----VRLKVLKADGGMAQNRLFLKIQADLLG-VPVAV------PEVTETTA 436 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTS----CCCCCEEEESGGGGCHHHHHHHHHHHT-SCEEE------ESCSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcEEEEecccccCHHHHHHHHHHhC-CeeEe------cCCcccHH
Confidence 4555432 333344444444444333333 246789999999999999999999995 55543 35667999
Q ss_pred hhHHHHHHHHhC
Q psy5548 90 YGAAVQAAILHG 101 (183)
Q Consensus 90 ~GAa~~a~~l~~ 101 (183)
+|||+.|+.-.+
T Consensus 437 lGaA~la~~a~G 448 (495)
T 2dpn_A 437 LGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhcC
Confidence 999999987655
No 40
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=96.45 E-value=0.0058 Score=52.53 Aligned_cols=52 Identities=15% Similarity=-0.003 Sum_probs=41.6
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchh-HHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCE-AVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~e-aVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|.+.+++.+.++ .++... ...+ +.|+|||+.|+.-.+.
T Consensus 386 ~~~~i~~~GG~a~s~~~~Qi~Adv~g-~pV~~~------~~~e~~~alGAA~lA~~~~g~ 438 (484)
T 2itm_A 386 KPQSVTLIGGGARSEYWRQMLADISG-QQLDYR------TGGDVGPALGAARLAQIAANP 438 (484)
T ss_dssp CCSCEEEESGGGCCHHHHHHHHHHHC-CCEEEE------SCTTSCHHHHHHHHHHHHHCT
T ss_pred CcceEEEEeccccCHHHHHHHHHHhC-CeEEeC------CCCCcccHHHHHHHHHHHcCC
Confidence 47789999999999999999999995 555433 3345 4899999999876653
No 41
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=96.44 E-value=0.0091 Score=51.60 Aligned_cols=81 Identities=20% Similarity=0.128 Sum_probs=54.6
Q ss_pred cHHHHHH-hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHh
Q psy5548 11 ERQDLAS-AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 11 tR~~fe~-l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA 89 (183)
+|.++-+ +++-+.-.+.+.++.+-+..+. .++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|
T Consensus 373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~----~~~~i~~~GG~a~s~~~~Qi~Adv~g-~pV~~------~~~~e~~a 441 (504)
T 2d4w_A 373 NRNHIARAALEATAFQSREVVDAMNADSGV----DLTELRVDGGMVANELLMQFQADQLG-VDVVR------PKVAETTA 441 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----CCCEEEEESGGGGCHHHHHHHHHHHT-SCEEE------ESCSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcceEEEeCCcccCHHHHHHHHHHhC-CeEEe------CCCCcchH
Confidence 4554433 3333333444444443333332 46789999999999999999999995 55543 35678999
Q ss_pred hhHHHHHHHHhCC
Q psy5548 90 YGAAVQAAILHGD 102 (183)
Q Consensus 90 ~GAa~~a~~l~~~ 102 (183)
+|||+.|+.-.+.
T Consensus 442 lGaA~lA~~~~G~ 454 (504)
T 2d4w_A 442 LGAAYAAGIAVGF 454 (504)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCc
Confidence 9999999876653
No 42
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=96.42 E-value=0.0071 Score=52.42 Aligned_cols=52 Identities=23% Similarity=0.072 Sum_probs=42.7
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|.+.+++.+.|+ .++.. ....|+.|+|||+.|+.-.+.
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA~~a~G~ 451 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVLQ-RPVQL------LANPLGSAVGAAWVAAIGGGD 451 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHT-SCEEE------EECCSTHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHhC-CeEEe------cCCCCchHHHHHHHHHHHhCC
Confidence 47899999999999999999999995 55543 244678999999999876663
No 43
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=96.42 E-value=0.0081 Score=52.08 Aligned_cols=51 Identities=14% Similarity=-0.118 Sum_probs=43.8
Q ss_pred CCcEEeecCccchHHHHHHHHhhcCCccc-ccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQAWLVHQAN-SLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~~~f~~~~~-~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
++.|.++||.++-|.+.+++.+.|+ .++ .. ..+.|+.|+|||+.|+.-.+.
T Consensus 403 ~~~i~~~GGga~s~~~~Qi~ADv~g-~pV~~~------~~~~e~~alGaA~lA~~a~G~ 454 (511)
T 3hz6_A 403 VGLLKVVGGGARSEAWLRMIADNLN-VSLLVK------PDAHLHPLRGLAALAAVELEW 454 (511)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHHT-CEEEEC------CCGGGHHHHHHHHHHHHHTTS
T ss_pred CCEEEEeCchhcCHHHHHHHHHHHC-CeeEEe------cCCCCchHHHHHHHHHHHhCC
Confidence 7899999999999999999999995 555 43 478999999999999876654
No 44
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=96.35 E-value=0.011 Score=51.26 Aligned_cols=52 Identities=19% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|.+.+++.+.++ .++.. ..+.|+.|+|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~~~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA~~a~G~ 452 (510)
T 2p3r_A 401 RLHALRVDGGAVANNFLMQFQSDILG-TRVER------PEVREVTALGAAYLAGLAVGF 452 (510)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHT-SEEEE------ESCCCHHHHHHHHHHHHHHTS
T ss_pred CccEEEEeCchhcCHHHHHHHHHHhC-CceEe------cCCCCcHHHHHHHHHHHHhCc
Confidence 47899999999999999999999995 55533 356789999999999876664
No 45
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=96.33 E-value=0.012 Score=50.88 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=43.7
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|+|||+.|+.-.|.
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~g-~pV~~------~~~~e~~alGaA~lA~~a~G~ 454 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADILD-IDVQR------AANLETTALGAAYLAGLAVGF 454 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHT-SEEEE------CSSSCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEecccccCHHHHHHHHHHhC-CeEEe------cCCCcchhHHHHHHHHHHhCc
Confidence 47899999999999999999999995 55543 467789999999999876654
No 46
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=96.33 E-value=0.0095 Score=51.80 Aligned_cols=52 Identities=15% Similarity=-0.085 Sum_probs=42.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHhCC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGD 102 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~~ 102 (183)
.++.|.++||.++-|.+.+++.+.|+ .++.. ..+.|+.|+|||+.|+.-.|.
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg-~pV~~------~~~~e~~alGAA~lA~~a~G~ 476 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLD-APVDR------PVILETTALGVAWLAGSRAGV 476 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHT-SCEEE------ESCCCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCccccCHHHHHHHHHHhC-CeEEe------cCCCccHHHHHHHHHHHHcCC
Confidence 57899999999999999999999995 55543 356789999999999876664
No 47
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=96.30 E-value=0.0036 Score=50.58 Aligned_cols=47 Identities=15% Similarity=0.030 Sum_probs=37.9
Q ss_pred CCcEEeecC-ccchHHHHHHHHhhc--CCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 45 FEDKQKAVG-SHLYPIITKLYQAWL--VHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 45 i~~ViLvGG-ss~iP~V~~~l~~~f--~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
++.|+++|| -+..|.+++.|++++ .+.++... -+|.-+.|.|||++|
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p-----~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYV-----ENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEEC-----TTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEEC-----CCccHHHHHHHHHhC
Confidence 457999999 899999999999874 34445445 688999999999864
No 48
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=96.25 E-value=0.0093 Score=52.24 Aligned_cols=56 Identities=18% Similarity=0.029 Sum_probs=41.9
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCC-cc-cccCCCcccCCchhHHhhhHHHHHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVH-QA-NSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~-~~-~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
..+|..|+|+||+|.+|-+.++.++.|.. .. +.+.+....-.|.-|+|.|..+|..
T Consensus 546 ~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 546 IRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp GGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 46789999999999999999999999965 21 1111111125899999999987754
No 49
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=96.22 E-value=0.014 Score=50.35 Aligned_cols=80 Identities=16% Similarity=0.036 Sum_probs=53.3
Q ss_pred cHHHHHH-hhhhHHHhHHHHHHHHHhhCCCCCCCCC-CcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHH
Q psy5548 11 ERQDLAS-AGEKPRSSTSEIVIKWLDSNPAGREGRF-EDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAV 88 (183)
Q Consensus 11 tR~~fe~-l~~~l~~~~~~~~~~~l~~~~~~~~~~i-~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaV 88 (183)
+|.++-+ +++-+.-.+...++.+-+..+. .+ +.|.++||.++-|.+.+++.+.++ .++.. ..+.|+.
T Consensus 376 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~----~~~~~i~~~GG~a~s~~~~Q~~Adv~g-~pV~~------~~~~e~~ 444 (503)
T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVDSLTSDMGI----EMLHVLRCDGGMTKNKPFMQFNSDIIN-TKIEV------SKYKEVT 444 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SCCSCEEEESGGGGCHHHHHHHHHHHT-SCEEE------ESCSCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CccceEEEeCccccCHHHHHHHHHHHC-CeEEe------cCCCcch
Confidence 4544432 3333333344444433232332 36 789999999999999999999995 55543 3556799
Q ss_pred hhhHHHHHHHHhC
Q psy5548 89 AYGAAVQAAILHG 101 (183)
Q Consensus 89 A~GAa~~a~~l~~ 101 (183)
|+|||+.|+.-.+
T Consensus 445 alGaA~la~~~~G 457 (503)
T 2w40_A 445 SLGAAVLAGLEVK 457 (503)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987665
No 50
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=96.05 E-value=0.0097 Score=52.22 Aligned_cols=55 Identities=20% Similarity=0.057 Sum_probs=41.1
Q ss_pred CCCCCcEEeecCccchHHHHHHHHhhcCC-cc-cccCCCcccCCchhHHhhhHHHHH
Q psy5548 42 EGRFEDKQKAVGSHLYPIITKLYQAWLVH-QA-NSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 42 ~~~i~~ViLvGGss~iP~V~~~l~~~f~~-~~-~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
..+|..|+|+||+|.+|-+.++.++.|.. .. +.+.+....-.|.-|+|.|..+|.
T Consensus 548 ~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 548 IRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp STTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred ccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhh
Confidence 46789999999999999999999999965 21 111111112589999999998764
No 51
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=95.41 E-value=0.052 Score=46.52 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=38.1
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
.++.|.++||.++-|.+.+++.+.|+ .++.. .. .|+.|+|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvlg-~pV~~------~~-~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADACG-IRVIA------GP-VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHT-SEEEE------CC-TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHHC-Ceeec------CC-ccHhHHHHHHHHHH
Confidence 47799999999999999999999995 55543 23 68999999766654
No 52
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=93.66 E-value=0.056 Score=44.95 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=37.3
Q ss_pred CCcEEeecC-ccchHHHHHHHHhhcC-----CcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 45 FEDKQKAVG-SHLYPIITKLYQAWLV-----HQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 45 i~~ViLvGG-ss~iP~V~~~l~~~f~-----~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
++.|+++|| -++.|.+++.|++.+. +.++... -+|.-+-|+|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~-----~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFL-----EHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEE-----TTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEc-----CCccHHHHHHHHHHh
Confidence 447999999 8999999999998762 2344444 588889999999875
No 53
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=93.34 E-value=0.097 Score=45.07 Aligned_cols=46 Identities=9% Similarity=-0.095 Sum_probs=38.7
Q ss_pred CcEEeecCccchHHHHHHHHhh-cCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 46 EDKQKAVGSHLYPIITKLYQAW-LVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 46 ~~ViLvGGss~iP~V~~~l~~~-f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.|.++||.++-|...+++.+. |+ .++.. ....|+.|+|||+.|+.
T Consensus 389 ~~i~~~GG~a~s~~w~Qi~ADv~~g-~pV~~------~~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 389 GRILVEGRFAEADVFVRALASLRPD-CAVYT------ANAHNDVSFGALRLIDP 435 (482)
T ss_dssp SEEEEESGGGGCHHHHHHHHHHSTT-SEEEE------ESSCCCTTGGGHHHHCT
T ss_pred CeEEEeCCcccCHHHHHHHhhhcCC-CeEEE------cCCCchHHHHHHHHhCc
Confidence 6899999999999999999999 95 55543 35567899999999864
No 54
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=92.55 E-value=0.46 Score=39.57 Aligned_cols=78 Identities=8% Similarity=-0.080 Sum_probs=49.4
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
++.+-+.+-+...|-+.++... ...+.|+++||..+-|.+-++|++.+++..+... ....+++|-.-|..-|+.|
T Consensus 260 Dv~ATLt~~TA~sIa~~~~~~~----~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~-d~~Gi~~d~~EA~aFA~LA 334 (371)
T 3qbx_A 260 DIQATLLELSARSISESLLDAQ----PDCEEVLVCGGGAFNTALMKRLAMLMPEARVAST-DEYGIPPAWMEGMAFAWLA 334 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEG-GGGTCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCH-HHcCCChhHHHHHHHHHHH
Confidence 3444444445555555555432 2467899999999999999999999975443221 1122566655566667777
Q ss_pred HHH
Q psy5548 97 AIL 99 (183)
Q Consensus 97 ~~l 99 (183)
...
T Consensus 335 ~~~ 337 (371)
T 3qbx_A 335 HRF 337 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 55
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=89.24 E-value=1.2 Score=37.07 Aligned_cols=78 Identities=10% Similarity=-0.117 Sum_probs=48.4
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
+++.+-|.+=+...|-+.++... ..+.|+++||..+-|.+-++|++.+++..+..+ ....+++|-.-|..-|+.
T Consensus 266 ~Dv~ATLt~~TA~sIa~~~~~~~-----~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t-~~~Gi~~d~~EA~aFA~L 339 (370)
T 3cqy_A 266 EDIQSTLLDLTCHSIAQDILKLA-----QEGELFVCGGGAFNAELMQRLAALLPGYRIDTT-SALGVDPKWAEGIAFAWL 339 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEG-GGGTCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeH-HHhCCChhHHHHHHHHHH
Confidence 34444455555566666665431 356899999999999999999999976433221 112245554444444666
Q ss_pred HHHH
Q psy5548 96 AAIL 99 (183)
Q Consensus 96 a~~l 99 (183)
|...
T Consensus 340 A~~~ 343 (370)
T 3cqy_A 340 AMRY 343 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 56
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=88.95 E-value=0.37 Score=43.86 Aligned_cols=56 Identities=13% Similarity=-0.056 Sum_probs=39.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCC--cccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVH--QANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~--~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
.++.|+|.||-..-..+++.|.+.+.. -++... +...-.|-++|+|+|+.|+....
T Consensus 693 g~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p--~~~p~~DgGialGQA~~a~~~~~ 750 (761)
T 3vth_A 693 GINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSN--SKVPCNDGGISLGQAVIANKILE 750 (761)
T ss_dssp CCCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEEC--SSSCSSGGGHHHHHHHHHHHHHT
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEec--CCCCCCchHHHHHHHHHHHHHhc
Confidence 467999999999999999999987632 222111 00123489999999999875543
No 57
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=88.85 E-value=1 Score=40.26 Aligned_cols=78 Identities=8% Similarity=-0.027 Sum_probs=48.0
Q ss_pred HhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
+++..+-+.+.+.+-+++..+. ....++.|+|.||-..-..+++.|.+.+.+-++... +...-.|.++|+|.|+.|
T Consensus 574 dIAasFh~ala~~L~~~~~ra~--~~~g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p--~~~p~~DnGiaLGQA~~a 649 (657)
T 3ttc_A 574 QRAWAFHDALAQGFAALMREQA--TMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFP--QSLPAGDGGLSLGQGVIA 649 (657)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HTTTCCEEEEESGGGGCHHHHHHHHHHTTTSEEECC--CSSCSSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHcCCCEEEEECcHHHHHHHHHHHHHHhCCCEEEec--CCCCCCcHHHHHHHHHHH
Confidence 3444433334444444433332 123467999999999999999999998742222111 011334899999999988
Q ss_pred HH
Q psy5548 97 AI 98 (183)
Q Consensus 97 ~~ 98 (183)
+.
T Consensus 650 ~~ 651 (657)
T 3ttc_A 650 AA 651 (657)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 58
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=87.90 E-value=0.98 Score=41.18 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCc-hhHHhhhHHHHHHH-HhCC
Q psy5548 43 GRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDT-CEAVAYGAAVQAAI-LHGD 102 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p-~eaVA~GAa~~a~~-l~~~ 102 (183)
..++.|+|.||-..--.+++.|.+.+....+... ....+.| |..+|+|+|++|+. +.+.
T Consensus 704 tg~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~-~p~~vP~nDgGiALGQA~iA~~~L~~~ 764 (772)
T 4g9i_A 704 FGVKNVALSGGVAYNELITKMIRKVVEANGLNFH-VTTEVPRGDNGVNVGQAFLGGLYLEGY 764 (772)
T ss_dssp TTCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCC-CCTTSCSSGGGHHHHHHHHHHHHHHTS
T ss_pred hCcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEE-ccCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 3467899999999999999999998753322111 0001222 88899999988754 4443
No 59
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=86.93 E-value=0.93 Score=39.92 Aligned_cols=82 Identities=16% Similarity=0.037 Sum_probs=51.1
Q ss_pred HHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 15 LASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 15 fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
..++++.+-..+.+.+-+++..+. ....++.|.|.||-..-..+++.|.+..+-..+... ..-.|.++++|+|+
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~--~~tg~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vp----p~~~D~G~aiGqA~ 353 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVL--ARTGERTLFVAGGVGLNATMNGKLLTRSTVDKMFVP----PVASDIGVSLGAAA 353 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHH--HHHTCSEEEEESGGGGCHHHHHHHHTSTTCSEEECC----TTCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCeEEecchHHHHHHHHHHHHHhcCCCeEEeC----CCCCchHHHHHHHH
Confidence 344555544444444444433321 123477999999999999999999876432222211 02348999999999
Q ss_pred HHHHHhCC
Q psy5548 95 QAAILHGD 102 (183)
Q Consensus 95 ~a~~l~~~ 102 (183)
++....+.
T Consensus 354 ~a~~~~g~ 361 (576)
T 3ven_A 354 AVAVELGD 361 (576)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99876554
No 60
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=86.70 E-value=0.6 Score=37.94 Aligned_cols=55 Identities=2% Similarity=-0.213 Sum_probs=36.6
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcC--CcccccCCCcccCCchhHHhhhHHHHHHHHh
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLV--HQANSLVGTKTRHDTCEAVAYGAAVQAAILH 100 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~--~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~ 100 (183)
.++.|+|.||-..-..+++.|.+.+. +.++... +...-.|.++++|+|.+.....
T Consensus 244 ~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p--~~~~~~D~G~~iG~a~~~~~~~ 300 (330)
T 2ivn_A 244 EKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVP--PYDLCRDNGAMIAYTGLRMYKA 300 (330)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECC--CHHHHSSCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEec--CCCCCChhHHHHHHHHHHHHhc
Confidence 35689999999999999999998763 1222211 0001226789999987655443
No 61
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=85.03 E-value=0.5 Score=39.94 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=54.6
Q ss_pred eeecHHHHH---HhhhhH------HHhHHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhcCCc------
Q psy5548 8 RKAERQDLA---SAGEKP------RSSTSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWLVHQ------ 71 (183)
Q Consensus 8 ~~itR~~fe---~l~~~l------~~~~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~------ 71 (183)
.++..++|. -+-.|- ...+.+++.+.|.++... .++-...|+|+||+|.+|.+.+.|++.+...
T Consensus 280 i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~ 359 (427)
T 3dwl_A 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359 (427)
T ss_dssp CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC--
T ss_pred EEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhcc
Confidence 456677762 232331 234778888888876420 1222367999999999999998888754110
Q ss_pred ---------------ccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 72 ---------------ANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 72 ---------------~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
++... .++..++=+|+++.|..
T Consensus 360 ~~~~~~~~~p~~~~vkv~~~-----~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 360 RSEMLSGAKSGGVDVNVISH-----KRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp -----------CCCCCEECC-----TTCTTHHHHHHHHHHHS
T ss_pred ccccccccCCCceeEEEecC-----CccccceecCceeeccc
Confidence 01111 35577899999999853
No 62
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=84.40 E-value=1 Score=36.79 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCC--cccccCCCcccCCchhHHhhhHHHHHHHHhC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVH--QANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~--~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~~ 101 (183)
+.+.+.+.++++.. .++.|+|.||-..-..+++.|.+.+.. .++... +...-.|.++++|+|.+.....+
T Consensus 235 ~~l~~~~~~a~~~~------g~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p--~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 235 AMLVEVLERALYVS------GKDEILMAGGVALNRRLRDMVTNMAREAGIRSYLT--DREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHH------TCSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECC--CTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc------CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEec--CCCCCChHHHHHHHHHHHHHHcC
Confidence 33444444444443 356899999999999999999987632 122211 00023488999999977665554
No 63
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=83.82 E-value=2.3 Score=33.43 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=34.4
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.+.|++.||-+..|.+.+.+++.+....+..+ - .+.+.++|||..+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~-----~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISD-----L-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEE-----C-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEecc-----C-CCCChHHHHHHHHHH
Confidence 456788888887667777888777743334334 3 457789999987753
No 64
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=82.73 E-value=0.86 Score=39.67 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCcEEeecCccchHHHHHHHHhhcCCc----------ccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQAWLVHQ----------ANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~~~f~~~----------~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
...|+|+||+|.+|.+.+.|+..+... .+.....+...||..++=+||++.|..
T Consensus 501 ~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL 564 (593)
T 4fo0_A 501 YSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACL 564 (593)
T ss_dssp HHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHC
T ss_pred hCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcC
Confidence 467999999999999998887654211 011000001136677777999999864
No 65
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=81.47 E-value=1.9 Score=34.53 Aligned_cols=69 Identities=14% Similarity=-0.079 Sum_probs=38.0
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch-HHH----HHHHHhhcC-----CcccccCCCcccCCchhHHhh
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY-PII----TKLYQAWLV-----HQANSLVGTKTRHDTCEAVAY 90 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i-P~V----~~~l~~~f~-----~~~~~~~~~~~~~~p~eaVA~ 90 (183)
.++++..+.+-..+...- ..-+.+.|+|-||-++. |.+ ++.++++.. ...+..+ -..+.+.++
T Consensus 239 ~~~~~~~~~La~~i~~l~--~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s-----~l~~~a~~~ 311 (321)
T 3r8e_A 239 AVWADIGTIIGESLVNIV--RVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKA-----TLENDAGLL 311 (321)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEEC-----SSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHCCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEc-----CCCCcHHHH
Confidence 345555544444444321 12245688999988875 444 444444331 1123333 455789999
Q ss_pred hHHHHH
Q psy5548 91 GAAVQA 96 (183)
Q Consensus 91 GAa~~a 96 (183)
|||..+
T Consensus 312 GAa~l~ 317 (321)
T 3r8e_A 312 GAAGLI 317 (321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 66
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=79.07 E-value=2.1 Score=33.50 Aligned_cols=50 Identities=12% Similarity=-0.086 Sum_probs=29.2
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCC-----------cccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVH-----------QANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~-----------~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.+.|+|.||-+..|.+.+.+++.+.. ..+..+ ...+.+.++|||..+..
T Consensus 227 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~-----~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 227 DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQAC-----TYHADANLYGALVNWLQ 287 (292)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEEC-----SCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEc-----ccCChhhHHHHHHHHHH
Confidence 345788888877655555555443311 112222 23467899999987753
No 67
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=78.67 E-value=1.7 Score=37.59 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCcEEeecCccchHHHHHHHHhhc----CCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 26 TSEIVIKWLDSNPAG-REGRFEDKQKAVGSHLYPIITKLYQAWL----VHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~-~~~~i~~ViLvGGss~iP~V~~~l~~~f----~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+++.+.+.++... .+.-...|+|+||+|.+|.+.++|+..+ |..++.........++..++=+|+++.|.
T Consensus 394 i~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p~~~i~v~~~~~~~er~~s~WiGgsilas 470 (498)
T 3qb0_A 394 LADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGHTIERQYQSWLGGSILTS 470 (498)
T ss_dssp HHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSTTSCCCEECCSCTGGGGSHHHHHHHHHHT
T ss_pred chHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCCCCeeEEEcCCCCCccCccEEcccEEEec
Confidence 566667777665421 1233478999999999999999988644 31111111000002345677799998884
No 68
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=78.04 E-value=2.8 Score=33.47 Aligned_cols=69 Identities=16% Similarity=-0.045 Sum_probs=37.7
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch-----HHHHHHHHhhcC-----C-cccccCCCcccCCchhHHh
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY-----PIITKLYQAWLV-----H-QANSLVGTKTRHDTCEAVA 89 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i-----P~V~~~l~~~f~-----~-~~~~~~~~~~~~~p~eaVA 89 (183)
.++++..+.+-..+...-. .-+.+.|+|.||-+.. +.+++.++++.. . ..+..+ -..+.+.+
T Consensus 231 ~~~~~~~~~La~~i~~l~~--~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s-----~l~~~a~l 303 (321)
T 3vgl_A 231 DSFRELARWAGAGLADLAS--LFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAA-----QLGGKAGL 303 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEEC-----TTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEEC-----CCCCcHHH
Confidence 3455544444444433211 1234678888887764 445555554432 0 122233 34678999
Q ss_pred hhHHHHH
Q psy5548 90 YGAAVQA 96 (183)
Q Consensus 90 ~GAa~~a 96 (183)
+|||..+
T Consensus 304 ~GAa~l~ 310 (321)
T 3vgl_A 304 VGAADLA 310 (321)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 69
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=75.68 E-value=2.9 Score=33.12 Aligned_cols=69 Identities=12% Similarity=-0.113 Sum_probs=36.8
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc-hHHHHHHHHhhcCCc---------ccccCCCcccCCchhHHhhh
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL-YPIITKLYQAWLVHQ---------ANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~-iP~V~~~l~~~f~~~---------~~~~~~~~~~~~p~eaVA~G 91 (183)
++++..+.+-..+...-. .-+.+.|+|.||-+. .|.+.+.+++.+... .+..+ ...+.+.++|
T Consensus 242 i~~~~~~~L~~~i~~l~~--~l~p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~-----~~~~~a~~~G 314 (326)
T 2qm1_A 242 VVDRVCFYLGLATGNLGN--TLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLA-----ELGNEAGVIG 314 (326)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHCCSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEEC-----SSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--hcCCCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEc-----CcCchHHHHH
Confidence 444444444444433210 113457888888875 455555555443211 12222 3456789999
Q ss_pred HHHHHH
Q psy5548 92 AAVQAA 97 (183)
Q Consensus 92 Aa~~a~ 97 (183)
||..+.
T Consensus 315 Aa~l~~ 320 (326)
T 2qm1_A 315 AASLAL 320 (326)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 998764
No 70
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=74.73 E-value=2.3 Score=33.68 Aligned_cols=50 Identities=10% Similarity=-0.086 Sum_probs=32.8
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCc-----ccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQ-----ANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~-----~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.+.|+|-||-+..|.+.+.+++.+... .+..+ -..+.+.++|||..+..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s-----~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETA-----THKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEEC-----SCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEEC-----CcCChHHHHhHHHHHHH
Confidence 4568899998887666666666655321 22223 45577999999987754
No 71
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=74.64 E-value=2.6 Score=33.45 Aligned_cols=49 Identities=18% Similarity=0.069 Sum_probs=29.6
Q ss_pred CCCcEEeecCcc-c-----hHHHHHHHHhhcCC---cccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 44 RFEDKQKAVGSH-L-----YPIITKLYQAWLVH---QANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 44 ~i~~ViLvGGss-~-----iP~V~~~l~~~f~~---~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+.|+|-||-+ . ++.+++.+.++... ..+..+ .-.+.+.++|||..+.
T Consensus 237 ~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s-----~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 237 DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRA-----RLGAEAGLLGAALTAY 294 (302)
T ss_dssp CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEEC-----SSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEc-----CCCCcHHHHHHHHHHH
Confidence 456788888877 3 34555555554321 112223 3457899999998774
No 72
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=74.23 E-value=2.3 Score=34.15 Aligned_cols=68 Identities=9% Similarity=-0.088 Sum_probs=37.7
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCc--------ccccCCCcccCCchhHHhhhHH
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQ--------ANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~--------~~~~~~~~~~~~p~eaVA~GAa 93 (183)
++++..+.+-..+...- ..-+.+.|+|-||-+..+.+.+.+++.+... .+..+ --.+.+.++|||
T Consensus 249 ~~~~~~~~La~~i~~l~--~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s-----~lg~~a~~~GAa 321 (327)
T 4db3_A 249 HVERFMELLAICFGNIF--TANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKA-----KHGDSGGVRGAA 321 (327)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHCCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEEC-----SCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhCCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEEC-----CCCCcHHHHHHH
Confidence 34444444444443321 1224568888888887666666666554321 12222 344788999998
Q ss_pred HHH
Q psy5548 94 VQA 96 (183)
Q Consensus 94 ~~a 96 (183)
..+
T Consensus 322 ~l~ 324 (327)
T 4db3_A 322 FLN 324 (327)
T ss_dssp HTT
T ss_pred HHH
Confidence 654
No 73
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=70.42 E-value=6 Score=31.15 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
...+.+.+.++... ..++|.|+| |.|++|.+++.+++.++.. + .- +||-+++|+-+.
T Consensus 162 ~~~~~l~~~l~~l~---~~g~D~iVL--GCTh~pll~~~i~~~~~~~-v-~v-----IDs~~~~a~~~~ 218 (269)
T 3ist_A 162 IAKKVVAESLLPLK---STKIDTVIL--GCTHYPLLKPIIENFMGDG-V-AV-----INSGEETASEVS 218 (269)
T ss_dssp HHHHHHHHHHGGGG---GSCCCEEEE--CSTTGGGGHHHHHHHHCTT-S-EE-----ECTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEE--CCCCHHHHHHHHHHHcCCC-C-eE-----ECcHHHHHHHHH
Confidence 34555555655432 345776665 8999999999999999632 3 23 799888887664
No 74
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=70.32 E-value=2 Score=33.60 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=29.0
Q ss_pred CCcEEeecCccchHHHHHHHHhhcCCc------ccccCCCcccCCchhHHhhhHHHHH
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQAWLVHQ------ANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~~~f~~~------~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
.+.|++.||-+..|.+.+.+++.+... .+..+ ...+.+.++|||..+
T Consensus 234 p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~-----~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 234 CQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAA-----HYRHDAGLLGAALLA 286 (289)
T ss_dssp CSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEEC-----SCSSCHHHHHHHHHH
T ss_pred CCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEEC-----CCCCchHHHHHHHHH
Confidence 456888887765566666666555321 12222 344678999999765
No 75
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=64.79 E-value=4 Score=32.22 Aligned_cols=60 Identities=10% Similarity=-0.113 Sum_probs=34.4
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc--hHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL--YPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~--iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
++++..+.+-..+...- .. +.+.|+|.||-+. .|.+.+.+++.+ ..|+.+.++||++.|.
T Consensus 231 i~~~~~~~L~~~l~~l~--~~-~p~~VvlgGgv~~~~~~~l~~~l~~~i-------------~~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 231 LLRQAGEDAWAIARALD--PQ-DELPVALCGGLGQALRDWLPPGFRQRL-------------VAPQGDSAQGALLLLQ 292 (305)
T ss_dssp HHHHHHHHHHHHHHHHC--TT-CCSCEEEESHHHHHTGGGSCHHHHHHC-------------CCCSSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh--cC-CCCeEEEECCchHhHHHHHHHHHHhhc-------------cCCCCCHHHHHHHHHh
Confidence 34444444444444332 13 5678888888764 455555555432 2345667899998763
No 76
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=64.27 E-value=5.6 Score=31.20 Aligned_cols=67 Identities=1% Similarity=-0.226 Sum_probs=40.5
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
+..++++..+-+-..+ .... ..+.+.|++.||-+.. |.+++.++++.. .+ ..|..+...||+.+|
T Consensus 212 A~~i~~~~~~~La~~i-~~~~--~~~p~~vvlgGGv~~~~~~~l~~~l~~~~~--~i--------~~~~~a~~~GA~~la 278 (291)
T 1zbs_A 212 VYSLVQNSFDDFLVRN-VLRY--NRPDLPLHFIGSVAFHYREVLSSVIKKRGL--TL--------GSVLQSPMEGLIQYH 278 (291)
T ss_dssp HHHHHHHHHHHHHHHH-TGGG--CCTTSCEEEESHHHHHTHHHHHHHHHHTTC--CE--------EEEESCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hccc--CCCCceEEEECchHHhhHHHHHHHHHHcCC--ee--------cccCcCHHHHHHHHH
Confidence 3334555555555555 2211 1256789999998775 677777766431 12 235577889999888
Q ss_pred HH
Q psy5548 97 AI 98 (183)
Q Consensus 97 ~~ 98 (183)
..
T Consensus 279 ~~ 280 (291)
T 1zbs_A 279 HN 280 (291)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 77
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=63.31 E-value=6.3 Score=32.44 Aligned_cols=49 Identities=10% Similarity=-0.119 Sum_probs=30.9
Q ss_pred CCCCcEEeecCccchHH-HHHHHHhhcCCc---ccccCCCcccCCchhHHhhhHHHHH
Q psy5548 43 GRFEDKQKAVGSHLYPI-ITKLYQAWLVHQ---ANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 43 ~~i~~ViLvGGss~iP~-V~~~l~~~f~~~---~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
.+.+.|+|.||-+..+. +.+.+++.+... .+... -..+++.++|||..+
T Consensus 294 ~~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~~~~i~~~-----~~~~~a~~~GAa~l~ 346 (381)
T 1saz_A 294 GEVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFPG-----SNEEKALALSALRVL 346 (381)
T ss_dssp TCCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEEB-----CCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCccChHHHHHHHHHHHHhhcCeEEEec-----CcchhHHHHHHHHHH
Confidence 36789999999886433 556666655321 22222 233468999998765
No 78
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=62.73 E-value=14 Score=29.18 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=31.2
Q ss_pred CCCcEEeecCccc----hHHHHHHHHhhcCCc------------ccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 44 RFEDKQKAVGSHL----YPIITKLYQAWLVHQ------------ANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 44 ~i~~ViLvGGss~----iP~V~~~l~~~f~~~------------~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+.|++-||-++ +|.+++.+.+..... .+..+ --.+.|.++|||..+.
T Consensus 224 dPe~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s-----~lg~~a~l~GAa~l~~ 288 (302)
T 3epq_A 224 APXXIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPP-----RLGSNAGIIGTLVLAH 288 (302)
T ss_dssp CCSCEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECC-----TTGGGHHHHHHHHHHH
T ss_pred CchhhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEEC-----CcCChHHHHHHHHHHH
Confidence 5668888888776 456677776653210 12222 3457899999998774
No 79
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=61.75 E-value=8.3 Score=31.50 Aligned_cols=49 Identities=16% Similarity=-0.024 Sum_probs=28.2
Q ss_pred CCCcEEeecCccch-HHHHHHHHhhcCC-------cccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 44 RFEDKQKAVGSHLY-PIITKLYQAWLVH-------QANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 44 ~i~~ViLvGGss~i-P~V~~~l~~~f~~-------~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+.|+|.||-+.. |.+.+.+++.+.. ..+..+ ...+.+.++|||..+.
T Consensus 314 dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s-----~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 314 GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFS-----KVQEPVIAFGAAVHAL 370 (380)
T ss_dssp CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEEC-----CCCSCHHHHHHHHHHH
T ss_pred CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEc-----CCCCcHHHHHHHHHHH
Confidence 34578888887753 5555555543321 112222 2345689999998763
No 80
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=61.09 E-value=13 Score=29.16 Aligned_cols=43 Identities=12% Similarity=-0.054 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.+...+.++++|+++++. ++||++|+.-|+++++ -+.+.+.|+
T Consensus 217 ~~~~~~~i~~aL~~agl~-~~did~v~~H~~~~~~---~d~i~~~lg 259 (317)
T 1hnj_A 217 VTELAHIVDETLAANNLD-RSQLDWLVPHQANLRI---ISATAKKLG 259 (317)
T ss_dssp HHHHHHHHHHHHHHTTCC-GGGCCEEEECCSCHHH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 446778899999999984 9999999999998875 346777774
No 81
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=60.27 E-value=5.3 Score=31.92 Aligned_cols=47 Identities=13% Similarity=0.026 Sum_probs=25.6
Q ss_pred cEEeecCccc-hHHHHHHHHhhcCCc----------ccccCCCcccCCchhHHhhhHHHHHHHH
Q psy5548 47 DKQKAVGSHL-YPIITKLYQAWLVHQ----------ANSLVGTKTRHDTCEAVAYGAAVQAAIL 99 (183)
Q Consensus 47 ~ViLvGGss~-iP~V~~~l~~~f~~~----------~~~~~~~~~~~~p~eaVA~GAa~~a~~l 99 (183)
.|+|.||-+. .|.+.+.+++.+... .+... ...+ +.++|||..+...
T Consensus 268 ~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~-----~~~~-a~~~GAa~la~~~ 325 (347)
T 2ch5_A 268 PILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLM-----KLRH-SSALGGASLGARH 325 (347)
T ss_dssp EEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEE-----EESS-CTHHHHHHHHHHT
T ss_pred eEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEE-----ecCC-ChHHHHHHHHHHh
Confidence 6777777764 355555554433211 11111 1223 7889999887543
No 82
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=58.51 E-value=13 Score=29.64 Aligned_cols=68 Identities=6% Similarity=-0.171 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc--hHHHHHHHHhhcCC----cccccCCCcccCCchhHHhhhHHHH
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL--YPIITKLYQAWLVH----QANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~--iP~V~~~l~~~f~~----~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
+++++.+.+-..+...- ..-+.+.|+|.||-+. .+.+++.+++.... .++..+ .. ..+.++|||..
T Consensus 264 il~~~~~~La~~i~~l~--~~l~P~~IvlgG~i~~~~~~~l~~~l~~~~~~~~~~~~i~~s-----~~-~~~~~~GAa~l 335 (343)
T 2yhw_A 264 ILRTAGTALGLGVVNIL--HTMNPSLVILSGVLASHYIHIVKDVIRQQALSSVQDVDVVVS-----DL-VDPALLGAASM 335 (343)
T ss_dssp HHHHHHHHHHHHHHHHH--HHTCCSEEEEESTTHHHHHHHHHHHHHHHSCGGGTTCEEEEC-----CC-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhCCCEEEEeCCcHHHHHHHHHHHHHHhcccccCCcEEEEc-----cC-CCchHHHHHHH
Confidence 44444444444443321 0123457787777653 33444555443211 112222 12 34678999987
Q ss_pred HH
Q psy5548 96 AA 97 (183)
Q Consensus 96 a~ 97 (183)
+.
T Consensus 336 ~~ 337 (343)
T 2yhw_A 336 VL 337 (343)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 83
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=58.37 E-value=1.9 Score=34.42 Aligned_cols=46 Identities=15% Similarity=-0.013 Sum_probs=25.1
Q ss_pred CCcEEeecCccch-HHHHHHHHhhcCCc--------ccccCCCcccCCchhHHhhhHHHHH
Q psy5548 45 FEDKQKAVGSHLY-PIITKLYQAWLVHQ--------ANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 45 i~~ViLvGGss~i-P~V~~~l~~~f~~~--------~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
.+.|+|.||-+.. +.+.+ +++.+... .+..+ ...+.+.++|||..+
T Consensus 270 p~~IvlgG~i~~~~~~~~~-l~~~l~~~~~~~~~~~~i~~s-----~~~~~a~~~GAa~la 324 (327)
T 2ap1_A 270 PDLLVIGGGLSNFTAITTQ-LAERLPRHLLPVARAPRIERA-----RHGDAGGMRGAAFLH 324 (327)
T ss_dssp CSEEEEESGGGGSTHHHHS-SGGGSGGGSCTTCCCCEEEEC-----SCTTTHHHHHHHHTT
T ss_pred CCEEEEeChhhcchhHHHH-HHHHHHHhhccccCCCEEEEc-----CCCCcHHHHHHHHHH
Confidence 4568888877663 33333 54444211 11112 234578899998764
No 84
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=57.56 E-value=18 Score=27.61 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 12 RQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 12 R~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
-++-+++.+.+.+.+.+.+.+.+++.+ --.+.|.||||-.+..+.+.+
T Consensus 7 ~~~~~~l~~~~A~~i~~~i~~~i~~~~------~~~l~LsgGstp~~~y~~L~~ 54 (226)
T 3lwd_A 7 QEGRQRLAERLADTVAQALEADLAKRE------RALLVVSGGSTPKPFFTSLAA 54 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSS------CEEEEECCSSTTHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhCC------CEEEEEcCCCCHHHHHHHHHh
Confidence 345566777777777787888876543 237889999999999988775
No 85
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=56.57 E-value=14 Score=29.12 Aligned_cols=54 Identities=4% Similarity=0.060 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
..+.+++.++.. . .+|.|+| |.|++|.+++.+++.++.. + .- +||-+++|+-+.
T Consensus 183 ~~~~~~~~l~~l----~-g~D~iIL--GCTh~PlL~~~i~~~~~~~-v-~l-----IDs~~~~A~~~~ 236 (274)
T 3uhf_A 183 LQSAMEYYFKNI----T-TPDALIL--ACTHFPLLGRSLSKYFGDK-T-KL-----IHSGDAIVEFLK 236 (274)
T ss_dssp HHHHHHHHHTTC----C-CCSEEEE--CSTTGGGGHHHHHHHHCTT-C-EE-----EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----c-CCCEEEE--CCCChHHHHHHHHHHcCCC-C-EE-----EcCHHHHHHHHH
Confidence 344455555442 2 5666655 9999999999999999532 3 23 788888777654
No 86
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=55.36 E-value=16 Score=28.86 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=31.8
Q ss_pred CCCcEEeecCccch-----HHHHHHHHhhcCCc------ccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 44 RFEDKQKAVGSHLY-----PIITKLYQAWLVHQ------ANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 44 ~i~~ViLvGGss~i-----P~V~~~l~~~f~~~------~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+.|+|-||-+.. +.+++.+++++... .+..+ --.+.+.++|||..+.
T Consensus 239 dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s-----~lg~~ag~~GAa~la~ 298 (310)
T 3htv_A 239 DPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAA-----SSSDFNGAQGAAILAH 298 (310)
T ss_dssp CCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEEC-----CCCTTHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEc-----CCCCcHHHHHHHHHHH
Confidence 45678888887654 57888887765211 12222 2347889999998774
No 87
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=54.28 E-value=5.9 Score=23.82 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=21.6
Q ss_pred CCceeecHHHHHHhhhhHHHhHHHHHHHHHhhC
Q psy5548 5 NGRRKAERQDLASAGEKPRSSTSEIVIKWLDSN 37 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~ 37 (183)
++...|++++|..+++.+-.-..+-+..+++..
T Consensus 15 ~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 47 (78)
T 1k9u_A 15 NGDGKISLSELTDALRTLGSTSADEVQRMMAEI 47 (78)
T ss_dssp TCSSEECHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 566789999999988775422334455555544
No 88
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=53.61 E-value=7.4 Score=31.68 Aligned_cols=15 Identities=7% Similarity=-0.234 Sum_probs=11.4
Q ss_pred chhHHhhhHHHHHHH
Q psy5548 84 TCEAVAYGAAVQAAI 98 (183)
Q Consensus 84 p~eaVA~GAa~~a~~ 98 (183)
.+.+.++|||..+..
T Consensus 357 ~~~a~l~GAa~l~~~ 371 (373)
T 2q2r_A 357 LLNLNLMGCYRCGLD 371 (373)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHh
Confidence 357899999987743
No 89
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2
Probab=51.64 E-value=16 Score=29.14 Aligned_cols=43 Identities=7% Similarity=-0.119 Sum_probs=33.6
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.....+.++++|+++++. .+|||.++.-++++++- +.+.+.|+
T Consensus 230 ~~~~~~~i~~aL~~agl~-~~did~v~~H~~~~~~~---d~i~~~lg 272 (339)
T 1mzj_A 230 VADVVPAAREALEVAGLT-VGDLVAFVPHQANLRII---DVLVDRLG 272 (339)
T ss_dssp HHHHHHHHHHHHHTTTCC-GGGCSEEEECCSCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEECCCCHHHH---HHHHHHhC
Confidence 456778899999999984 99999999999888752 34556553
No 90
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=51.28 E-value=3.2 Score=32.66 Aligned_cols=45 Identities=4% Similarity=-0.140 Sum_probs=27.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQA 96 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a 96 (183)
+.+.|+|.||-+.. +.+.|++.+....+ .- ..+..+.+.||+.+|
T Consensus 232 ~p~~vvlgGGv~~~--l~~~l~~~l~~~~~-~i-----~~~~~a~~~GAa~la 276 (291)
T 1zxo_A 232 KQYPVHFIGSIAYC--YKEILQDAARQTGI-QI-----GKILQSPMEGLIQYH 276 (291)
T ss_dssp TTSCEEECSHHHHH--THHHHHHHTTTTTC-CE-----EEECSCTHHHHHTTS
T ss_pred CCceEEEECcHHHH--HHHHHHHHHhcCCc-EE-----eecCCCHHHHHHHHH
Confidence 56788888887764 45555555532111 11 234567889998765
No 91
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=51.13 E-value=19 Score=28.04 Aligned_cols=43 Identities=9% Similarity=-0.069 Sum_probs=34.0
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.....+.++++|+++++ +++|||.+++-|+++++- +.+.+.|+
T Consensus 209 ~~~~~~~i~~al~~agl-~~~did~~~~H~~~~~~~---~~~~~~lg 251 (309)
T 2ebd_A 209 VRSMEEVCREVLEKAGV-KPEEVSLVIPHQANVRII---NALAEKLN 251 (309)
T ss_dssp HHHHHHHHHHHHHHHTC-CGGGCSEEEECCSCHHHH---HHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEcCCCHHHH---HHHHHHhC
Confidence 44677889999999998 499999999999988752 34666664
No 92
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2
Probab=51.07 E-value=18 Score=28.49 Aligned_cols=43 Identities=2% Similarity=-0.153 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.....+.++++|+++++. ++|||.++.-++++++ -+.+.+.|+
T Consensus 219 ~~~~~~~i~~al~~agl~-~~did~~~~H~~~~~~---~d~~~~~lg 261 (322)
T 1ub7_A 219 VRVMNTATLEAIEKAGLT-PEDIRLFVPHQANLRI---IDAARERLG 261 (322)
T ss_dssp HHHHHHHHHHHHHHHTCC-GGGCSEEEECCSCHHH---HHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 456778899999999984 9999999999988775 345666674
No 93
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.64 E-value=12 Score=31.16 Aligned_cols=48 Identities=13% Similarity=-0.087 Sum_probs=26.1
Q ss_pred CCCcEEeecCccc-----hHHHHHHHHhh-cC----CcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 44 RFEDKQKAVGSHL-----YPIITKLYQAW-LV----HQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 44 ~i~~ViLvGGss~-----iP~V~~~l~~~-f~----~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
+.+.|+|.||-+. ++.+++.+.+. ++ ...+..+ .-.+. .++|||..+.
T Consensus 357 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~I~~s-----~l~~~-~~~GAa~l~~ 414 (429)
T 1z05_A 357 NPEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVES-----RFYKQ-ATMPGAALIK 414 (429)
T ss_dssp CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEEC-----SCSSC-TTHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHHhcccccCCCcEEEEe-----cCCCc-cHHHHHHHHH
Confidence 3457888888765 24445555443 11 1122222 22345 8899998764
No 94
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=49.10 E-value=8 Score=31.78 Aligned_cols=51 Identities=8% Similarity=-0.056 Sum_probs=28.4
Q ss_pred CCCcEEeecCccc-hHHHHHHHHhhcCC---------cccccCCCcccCCchhHHhhhHHHHHHHH
Q psy5548 44 RFEDKQKAVGSHL-YPIITKLYQAWLVH---------QANSLVGTKTRHDTCEAVAYGAAVQAAIL 99 (183)
Q Consensus 44 ~i~~ViLvGGss~-iP~V~~~l~~~f~~---------~~~~~~~~~~~~~p~eaVA~GAa~~a~~l 99 (183)
+.+.|+|.||-+. .|.+.+.+++.+.. ..+..+ ...+++.++|||+....+
T Consensus 334 dP~~IvlgG~i~~~~~~l~~~i~~~l~~~~~~~~~~~~~i~~s-----~l~~~a~~~GAa~~~~~~ 394 (406)
T 1z6r_A 334 NPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST-----QFSNQGTMAGAALVKDAM 394 (406)
T ss_dssp CCSEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEEC-----SCCCCTTTTHHHHHHHHT
T ss_pred CCCEEEEeCccchhhHHHHHHHHHHHHHhcccccCCCcEEEEe-----CCCChHHHHHHHHHHHHH
Confidence 3457888888765 35444444443311 122222 344678999998765443
No 95
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=48.76 E-value=12 Score=29.29 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
..+.+.+.++... ..++|.|+| |.|++|.+.+.+++.++.. + .- +||-+++|+=+.
T Consensus 165 ~~~~l~~~l~~l~---~~~~D~IVL--GCTh~p~l~~~i~~~~~~~-v-~v-----IDs~~~~a~~~~ 220 (276)
T 2dwu_A 165 VTQQVKQALLPLT---KEDIDTLIL--GCTHYPLLESYIKKELGED-V-TI-----ISSAEETAIELS 220 (276)
T ss_dssp HHHHHHHHHHHHH---TSCCSEEEE--CSTTGGGGHHHHHHHHCTT-S-EE-----EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcCCCEEEE--CCCCHHHHHHHHHHHcCCC-C-eE-----ECcHHHHHHHHH
Confidence 3344445554421 235677666 8999999999999999532 2 23 788887776554
No 96
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=48.33 E-value=30 Score=27.21 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
...+.+.+.++... ..++|.|+| |.|.+|.+.+.+++.++.. + .- +||-+++|.=+.-
T Consensus 181 ~~~~~l~~~l~~l~---~~g~D~IVL--GCTh~p~l~~~i~~~l~~~-v-pv-----IDs~~a~a~~~~~ 238 (290)
T 2vvt_A 181 VAKKIVAETLQALQ---LKGLDTLIL--GCTHYPLLRPVIQNVMGSH-V-TL-----IDSGAETVGEVSM 238 (290)
T ss_dssp HHHHHHHHHHGGGT---TSCCSEEEE--CSTTGGGGHHHHHHHHCTT-C-EE-----EEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEE--CCcCHHHHHHHHHHHcCCC-C-eE-----ECcHHHHHHHHHH
Confidence 34455666665432 346777766 8899999999999998532 2 23 7888877765543
No 97
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A
Probab=48.07 E-value=20 Score=28.07 Aligned_cols=43 Identities=2% Similarity=-0.150 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.....+.++++|+++++. ++|||.+++-++++++- +.+.+.|+
T Consensus 211 ~~~~~~~i~~al~~agl~-~~did~~~~H~~~~~~~---d~~~~~lg 253 (313)
T 1zow_A 211 VRIMGDASTRVVEKANLT-SDDIDLFIPHQANIRIM---ESARERLG 253 (313)
T ss_dssp HHHHHHHHHHHHHHTTCC-GGGCSEEEECCSCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEEcCCCHHHH---HHHHHHhC
Confidence 456777899999999984 99999999999887653 33555553
No 98
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=47.49 E-value=13 Score=31.85 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=22.4
Q ss_pred CCcEEeecCccchHHHHHHHHhhcC
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
++.|+|+||-..-..+++.|.+...
T Consensus 249 ~~~~~~~GGVa~N~~l~~~l~~~~~ 273 (540)
T 3en9_A 249 KGEVMLVGGVAANNRLREMLKAMCE 273 (540)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred CCeEEEeCcHHhHHHHHHHHHHHHH
Confidence 5689999999999999999998763
No 99
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=47.45 E-value=7.7 Score=34.61 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.8
Q ss_pred CCcEEeecCccchHHHHHHHHhhcC
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
-+.|++|||++.+|.+.-.|.+...
T Consensus 501 y~nilivGggski~g~~~~L~dri~ 525 (655)
T 4am6_A 501 YSNILIVGGSSKIPALDFILTDRIN 525 (655)
T ss_dssp HTCEEEESTTCCCTTHHHHHHHHHH
T ss_pred hhcEEEEcCcccCccHHHHHHHHHH
Confidence 4679999999999999999988663
No 100
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=46.73 E-value=32 Score=26.82 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
....+.+.++... ...+|.|+| |.|++|.+++.+++.. .+ .- +||-+++|+-+.
T Consensus 163 ~~~~l~~~l~~l~---~~g~D~iIL--GCTh~pll~~~i~~~~---~v-~v-----iD~~~~~a~~~~ 216 (268)
T 3out_A 163 VELVAKEYLSYFH---DKNIQALIL--GCTHYPIIKESIAKIL---DV-KL-----IDPSLQASKMLY 216 (268)
T ss_dssp HHHHHHHHHGGGT---TSCCSEEEE--CSTTGGGGHHHHHHHC---CS-EE-----ECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCCEEEE--CCCChHHHHHHHhcCC---CC-ce-----echHHHHHHHHH
Confidence 3455555555432 345777666 8999999999998822 22 23 788888887664
No 101
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=46.61 E-value=27 Score=26.66 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=34.2
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHh
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~ 66 (183)
+-+++.+.+.+.+.+.+.+.+++.+. -.+.|.||||-.+..+.+.+.
T Consensus 13 ~~~~l~~~~A~~i~~~i~~~i~~~~~------~~l~lsgGstp~~~y~~L~~~ 59 (233)
T 3nwp_A 13 TPSALEQQLASKIASQLQEAVDARGK------ASLVVSGGSTPLKLFQLLSMK 59 (233)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSC------EEEEECCSSTTHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCC------EEEEEcCCCCHHHHHHHHHhc
Confidence 34556666667777777787776432 268899999999998887763
No 102
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=44.59 E-value=20 Score=28.14 Aligned_cols=47 Identities=6% Similarity=-0.120 Sum_probs=36.0
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 13 QDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 13 ~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
++.+++.+.+.+.+.+.+++.+++.+. -.+.|.||||-.+..+.+.+
T Consensus 30 ~~~~~l~~~~A~~i~~~i~~ai~~~~~------~~l~LsgGstP~~~y~~L~~ 76 (268)
T 3ico_A 30 PDSDILVAAAGKRLVGAIGAAVAARGQ------ALIVLTGGGNGIALLRYLSA 76 (268)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSC------EEEEECCSHHHHHHHHHHHH
T ss_pred CCcchhhhhhcchhhhHhHHHHHhcCc------eEEEEecCCchhHHHHHHHH
Confidence 455667777777788888888876442 27889999999999988877
No 103
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=44.15 E-value=30 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=34.6
Q ss_pred hhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHH
Q psy5548 18 AGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITK 62 (183)
Q Consensus 18 l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~ 62 (183)
.-+...+.+...++++|+++++ +.+|||.|...-|....+.++-
T Consensus 43 ~~~~h~~~l~~~i~~~L~~agi-~~~did~Ia~~~GPG~~~~lrv 86 (330)
T 2ivn_A 43 AAEHHARLMKPLLRKALSEAGV-SLDDIDVIAFSQGPGLGPALRV 86 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-CTTTCCEEEEEEESSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCC-CHHHCcEEEEECCCCchHHHHH
Confidence 3455667788899999999998 4899999998778776666553
No 104
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=44.13 E-value=20 Score=27.62 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=35.6
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 13 QDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 13 ~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
++.+++.+.+-+.+.+.+++.+++.+. -.+.|.||||-.+..+.+.+
T Consensus 14 ~~~~~l~~~~A~~i~~~i~~~~~~~~~------~~l~LsgGstP~~~y~~L~~ 60 (248)
T 3oc6_A 14 ADTAALVAAAGDRLVDAISSAIGERGQ------ATIVLTGGGTGIGLLKRVRE 60 (248)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSC------EEEEECCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCC------EEEEECCCccHHHHHHHHHh
Confidence 455667777777777888888876542 27889999999999888877
No 105
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=44.11 E-value=18 Score=28.66 Aligned_cols=43 Identities=12% Similarity=-0.068 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.+...+.++++|+++++. .+|||.++.-++++++- +.+.+.|+
T Consensus 223 ~~~~~~~i~~aL~~agl~-~~did~~~~H~~~~~~~---d~~~~~lg 265 (331)
T 2x3e_A 223 VTQMSDSVRRVLDRVGWQ-ASDLHHLVPHQANTRIL---AAVADQLD 265 (331)
T ss_dssp HHHHHHHHHHHHHHHTCC-GGGCSEEEECCCCHHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEEcCCCHHHH---HHHHHHcC
Confidence 356778899999999984 99999999999988753 34555553
No 106
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=43.91 E-value=29 Score=26.38 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
+-+++.+.+-+.+.+.+.+.+++.+. -.+.|.||||-.+..+.+.+
T Consensus 10 ~~~~l~~~~A~~i~~~i~~~i~~~~~------~~l~lsgGstp~~~y~~L~~ 55 (232)
T 3lhi_A 10 NAAEAAQSLADAVADALQGALDEKGG------AVLAVSGGRSPIAFFNALSQ 55 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSC------EEEEECCSSTTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCC------EEEEEeCCCCHHHHHHHHHh
Confidence 44566666777777777888776442 26889999999999887765
No 107
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=43.87 E-value=27 Score=28.12 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=37.2
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHH
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLY 64 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l 64 (183)
-+...+.....++.+|+++++ +.+|||.|...-|....+.++--+
T Consensus 49 ~~~H~~~l~~~i~~~L~~ag~-~~~did~Iav~~gPG~~t~lrvg~ 93 (334)
T 3eno_A 49 AVHHSEVIDTVISRALEKAKI-SIHDIDLIGFSMGPGLAPSLRVTA 93 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CGGGCCEEEEECSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCcchHHHHH
Confidence 355667888999999999998 489999999998888888776544
No 108
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=43.85 E-value=19 Score=27.71 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhh
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYG 91 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~G 91 (183)
...+.+.+.++... .. +|.|+| |.|.+|.+.+.+++.++ . + .- +||-+++|.=
T Consensus 155 ~~~~~l~~~~~~l~---~~-~d~IIL--GCT~~p~l~~~i~~~~~-~-v-pv-----iDs~~~~a~~ 207 (254)
T 1b73_A 155 ITRKVVEHYLKEFK---GK-IDTLIL--GCTHYPLLKKEIKKFLG-D-A-EV-----VDSSEALSLS 207 (254)
T ss_dssp GHHHHHHHHSTTTT---TT-CSEEEE--CCCCTTCCHHHHHHHSC-S-C-EE-----ECHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---hc-CCEEEE--CccChHHHHHHHHHHcC-C-C-eE-----ECCHHHHHHH
Confidence 34555666665542 23 777776 79999999999999885 2 2 23 7887766543
No 109
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=43.58 E-value=21 Score=27.60 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=35.9
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 13 QDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 13 ~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
++.+++.+..-+.+.+.+++.+++.+. -.+.|.||||-.+..+.+.+
T Consensus 14 ~~~~~l~~~~A~~i~~~i~~a~~~~~~------~~l~LsgGstP~~~y~~L~~ 60 (251)
T 3tx2_A 14 ADTDALVTAAGDRLASAITGALAERGK------AMIVLTGGGTGIALLKHLRD 60 (251)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHSC------EEEEECCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCC------EEEEECCCchHHHHHHHHHh
Confidence 455667777777788888888876542 26889999999999888876
No 110
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=43.31 E-value=30 Score=27.13 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 27 SEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
.+.+.+.++... ..++|.|+| |.|.+|.+.+.+++.++.. + .- +||-+++|.=+.
T Consensus 182 ~~~l~~~~~~l~---~~g~D~IVL--GCTh~p~l~~~i~~~l~~~-v-pv-----IDs~~a~a~~~~ 236 (286)
T 2jfq_A 182 SIVIHQTLKRWR---NSESDTVIL--GCTHYPLLYKPIYDYFGGK-K-TV-----ISSGLETAREVS 236 (286)
T ss_dssp HHHHHHHHGGGT---TCSCSEEEE--ESSSGGGGHHHHHHHTTTC-S-EE-----EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCEEEE--cCcCHHHHHHHHHHHcCCC-C-EE-----ECcHHHHHHHHH
Confidence 455666666542 346777776 7899999999999998532 2 23 788887776554
No 111
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=41.92 E-value=25 Score=26.97 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCC-----cccccCCCcccCCchhHHhhhHH
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVH-----QANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~-----~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
..+.+.+.++. . ..++|.|+| |.|++|.+.+.+++.+++ ..+ .- +||-+++|.=+.
T Consensus 159 ~~~~l~~~~~~--~--~~~~d~iIL--GCTh~p~l~~~i~~~~~~~~~~~~~v-~v-----iDs~~~~a~~~~ 219 (255)
T 2jfz_A 159 LETCMHYYFTP--L--EILPEVIIL--GCTHFPLIAQKIEGYFMGHFALPTPP-LL-----IHSGDAIVEYLQ 219 (255)
T ss_dssp HHHHHHHHHTT--C--CSCCSEEEE--ESTTGGGGHHHHHHHHHHHSCCSSCC-EE-----EEHHHHHHHHHH
T ss_pred HHHHHHHHHhh--h--cCCCCEEEE--cCcChHHHHHHHHHHhCccccCCCCC-EE-----ECcHHHHHHHHH
Confidence 44555555555 2 245777766 899999999999988851 112 23 788777666443
No 112
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=41.56 E-value=16 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=30.9
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
++|.|+| |.|++|.+.+.+++.++.. + .- +||-+++|.=+.-
T Consensus 177 ~~D~iVL--GCTh~pll~~~i~~~~~~~-v-~v-----IDs~~~~a~~~~~ 218 (272)
T 1zuw_A 177 SIDSLIL--GCTHYPILKEAIQRYMGEH-V-NI-----ISSGDETAREVST 218 (272)
T ss_dssp CCSEEEE--ESTTGGGGHHHHHHHHCTT-S-EE-----EEHHHHHHHHHHH
T ss_pred CCCEEEE--CccCHHHHHHHHHHHcCCC-C-eE-----ECcHHHHHHHHHH
Confidence 4666666 8999999999999998532 2 23 7888887766543
No 113
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=41.41 E-value=31 Score=26.09 Aligned_cols=66 Identities=9% Similarity=-0.064 Sum_probs=48.2
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHh------hcCCcccccCCCcccCCchhHHhhhH
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA------WLVHQANSLVGTKTRHDTCEAVAYGA 92 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~------~f~~~~~~~~~~~~~~~p~eaVA~GA 92 (183)
-+...+++..+++++|+++++ +..|||.|...=|......+|--+.- .+ +.+ ... ++.-++.|..+
T Consensus 32 ~~~Hs~~L~p~i~~~L~~a~~-~~~dld~Iav~~GPGsfTglRig~~~AkgLa~~~-~iP-l~g-----VstL~a~a~~~ 103 (213)
T 3r6m_A 32 PRDHTKKVLPMVDEVLKEAGL-TLQDLDALAFGRGPGSFTGVRIGIGIAQGLAFGA-ELP-MIG-----VSTLAAMAQAS 103 (213)
T ss_dssp CSCCHHHHHHHHHHHHHTTTC-CTTTCSEEEEEEESSCHHHHHHHHHHHHHHHHHT-TCC-EEE-----EEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCC-CHHHccEEEEecCCCchhhHHHHHHHHHHHHHHh-CCC-EEE-----EcCHHHHHHhh
Confidence 345677889999999999998 49999999999998888888765442 23 222 234 56677666654
No 114
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A
Probab=38.34 E-value=27 Score=28.51 Aligned_cols=42 Identities=14% Similarity=-0.054 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
.+...+.++++|+++++. .+|||.+++-++++++ -+.+.+.+
T Consensus 286 ~~~~~~~i~~aL~~agl~-~~dId~~~~H~~~~~i---~d~~~~~l 327 (393)
T 1ted_A 286 FSGVAPVVTEMLWDNGLQ-ISDIDLWAIHPGGPKI---IEQSVRSL 327 (393)
T ss_dssp HHHHHHHHHHHHHHTTCC-GGGCSCEEECCSCHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-HhHCCEEEECCCcHHH---HHHHHHHc
Confidence 455677889999999984 9999999999988774 23455555
No 115
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=38.26 E-value=18 Score=28.74 Aligned_cols=49 Identities=8% Similarity=-0.115 Sum_probs=27.4
Q ss_pred CCCc-EEeecCccch--H-----HHHHHHHh--hcC----CcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 44 RFED-KQKAVGSHLY--P-----IITKLYQA--WLV----HQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 44 ~i~~-ViLvGGss~i--P-----~V~~~l~~--~f~----~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
+.+. |++.||-+.. + .+++.+++ .++ ..++... . .+.+..+|||.++..
T Consensus 264 ~P~~gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~-~~~a~l~GAa~l~~~ 326 (332)
T 1sz2_A 264 GTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLI-----V-HDNPGLLGSGAHLRQ 326 (332)
T ss_dssp TCTTEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEE-----C-CSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEE-----E-CCchhHHHHHHHHHH
Confidence 3455 8999988753 3 34455543 121 0112111 2 467889999987643
No 116
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=38.04 E-value=35 Score=26.46 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
...+.+.+.++... .. +|.|+| |.|++|.+.+.+++.++.. + .- +||-+++|.=+.
T Consensus 169 ~~~~~l~~~~~~l~---~~-~d~iVL--GCTh~p~l~~~i~~~~~~~-v-pv-----iDs~~~~a~~~~ 224 (273)
T 2oho_A 169 IAKKIVYDSLAPLV---GK-IDTLVL--GCTHYPLLRPIIQNVMGPS-V-KL-----IDSGAECVRDIS 224 (273)
T ss_dssp HHHHHHHHHHTTTT---TS-CSEEEE--CSTTGGGGHHHHHHHHCTT-S-EE-----EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hc-CCEEEE--cCCCHHHHHHHHHHHhCCC-C-EE-----ECcHHHHHHHHH
Confidence 34555566666542 23 676665 7899999999999988522 2 23 788887776554
No 117
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=37.52 E-value=65 Score=28.56 Aligned_cols=84 Identities=13% Similarity=-0.066 Sum_probs=0.0
Q ss_pred CCceeecHHHHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH-hhcCCcccccCCCcccCC
Q psy5548 5 NGRRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ-AWLVHQANSLVGTKTRHD 83 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~-~~f~~~~~~~~~~~~~~~ 83 (183)
.....||..+.+++..-.-. +..-++-+|+++++. .+||+.|+|.||....=-+.+.+. .++|.....+. .-
T Consensus 497 ~~~i~itq~DIr~~qlAKaA-i~agi~~Ll~~~gi~-~~di~~v~lAGaFG~~l~~~~a~~iGllP~~~~~ki-----~~ 569 (631)
T 3zyy_X 497 NKDIVITEADIQNLIRAKAA-IFAGVRTMLAMVDLP-LEAIDRVIIAGGFGKYLNIKDAITIGLLPDIDINKF-----SY 569 (631)
T ss_dssp SSCEEEEHHHHHHHHHHHHH-HHHHHHHHHHHTTCC-GGGCCEEEEESSSCSEEEHHHHHHHTSSCCSCGGGE-----EE
T ss_pred CCcEEEeHHHHHHHHHHHHH-HHHHHHHHHHHcCCC-HHHccEEEEeccccccCCHHHHhhcCCCCCccccCE-----EE
Q ss_pred chhHHhhhHHHH
Q psy5548 84 TCEAVAYGAAVQ 95 (183)
Q Consensus 84 p~eaVA~GAa~~ 95 (183)
.-.+.-.||.+.
T Consensus 570 vGN~sl~GA~~~ 581 (631)
T 3zyy_X 570 VGNSSLKGARKA 581 (631)
T ss_dssp CSCHHHHHHHHH
T ss_pred ECcHHHHHHHHH
No 118
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis}
Probab=37.28 E-value=42 Score=27.95 Aligned_cols=46 Identities=4% Similarity=-0.031 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcCC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLVH 70 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~~ 70 (183)
......++++|+++++. ++|||.|++-|-++.+ |.-.+.|...|++
T Consensus 302 ~~~~~ai~~al~~Agl~-~~dId~ve~Hgtgt~~~D~~E~~al~~~fg~ 349 (434)
T 2gp6_A 302 ERAGHAITRAIQLAGLA-PGDIDHVNAHATGTQVGDLAEGRAINNALGG 349 (434)
T ss_dssp HHHHHHHHHHHHHTTCC-TTTEEEEECCCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHcCEEEEeCCcCccchHHHHHHHHHHhcc
Confidence 35677899999999984 9999999999766665 5555667777854
No 119
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=36.92 E-value=39 Score=26.27 Aligned_cols=45 Identities=13% Similarity=-0.135 Sum_probs=33.2
Q ss_pred HHHHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHH
Q psy5548 14 DLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLY 64 (183)
Q Consensus 14 ~fe~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l 64 (183)
+-+++.+.+.+.+.+.+.+.+++.+ --.+.|.||||-.+..+.+.
T Consensus 12 ~~~~l~~~~A~~i~~~i~~~i~~~~------~~~l~LsgGstP~~ly~~L~ 56 (266)
T 3eb9_A 12 TPQELSAAGCRKIVEIIEASGSQQW------PLSIALAGGSTPKMTYARLH 56 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGC------SEEEEECCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC------CEEEEEcCCCCHHHHHHHHH
Confidence 4566666677777777777776543 23788999999999988777
No 120
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=35.12 E-value=39 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=39.9
Q ss_pred HHhhhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHH
Q psy5548 16 ASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 16 e~l~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~ 65 (183)
+..-+...+++..+++++|+++++ +..|||.|...-|......+|--+.
T Consensus 39 ~~~~r~Hse~L~p~i~~~L~~a~~-~~~dld~Iav~~GPGsfTGlRiG~~ 87 (218)
T 2a6a_A 39 YTGEKKHAEILPVVVKKLLDELDL-KVKDLDVVGVGIGPGGLTGLRVGIA 87 (218)
T ss_dssp EESCGGGGGHHHHHHHHHHHHHTC-CGGGCSEEEEECCSSCHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCchHhHHHHHH
Confidence 344566788899999999999998 4899999999999888887775443
No 121
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A
Probab=34.94 E-value=38 Score=25.70 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=34.4
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHH
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITK 62 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~ 62 (183)
+...+++...++++|+++++ +..|||.|...=|....+.+|-
T Consensus 32 ~~h~~~l~~~i~~~L~~a~~-~~~did~Iav~~GPGsftglRi 73 (231)
T 2gel_A 32 REHTQRILPMVQEILAASGA-SLNEIDALAFGRGPGSFTGVRI 73 (231)
T ss_dssp SCCHHHHHHHHHHHHHHTTC-CGGGCSEEEEECCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCChhHhHHH
Confidence 34567789999999999998 4999999999888766666663
No 122
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Probab=34.81 E-value=31 Score=27.14 Aligned_cols=35 Identities=3% Similarity=-0.063 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchH
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYP 58 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP 58 (183)
.....+.++++|+++++. .+|||.+++-++++++-
T Consensus 231 ~~~~~~~i~~al~~agl~-~~dId~~~~H~~~~~~~ 265 (335)
T 1u6e_A 231 AFKMGDVGRRAMDAAGVR-PDQIDVFVPHQANSRIN 265 (335)
T ss_dssp HHHHHHHHHHHHHHHTCC-GGGCCEEEECCSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEECCCCHHHH
Confidence 456778899999999984 99999999999888753
No 123
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=34.11 E-value=40 Score=26.72 Aligned_cols=44 Identities=5% Similarity=-0.093 Sum_probs=33.7
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
...+...+.++++|+++++ +.+|||.+++-.++.++ -+.+.+.+
T Consensus 231 ~~~~~~~~~i~~~l~~~gl-~~~did~~~~Hq~~~~i---~~~~~~~l 274 (333)
T 4dfe_A 231 LAVNVLEKVAVEALEKANL-SAEQIDWLIPHQANIRI---MQSTCRKL 274 (333)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CGGGCSEEEECCSCHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHCCEEEEcCCCHHH---HHHHHHHh
Confidence 3445667888999999998 49999999998887764 35566655
No 124
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=33.66 E-value=28 Score=27.00 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
++|.|+| |.|++|.+.+.+++.++.. + .- +||-+++|.=+.-
T Consensus 176 ~~d~iVL--GCTh~p~l~~~i~~~~~~~-v-pv-----iDs~~~~a~~~~~ 217 (267)
T 2gzm_A 176 DIDTLIL--GCTHYPILGPVIKQVMGDK-V-QL-----ISSGDETAREVST 217 (267)
T ss_dssp CCSEEEE--CSTTGGGGHHHHHHHHCTT-S-EE-----EEHHHHHHHHHHH
T ss_pred CCCEEEE--cccChHHHHHHHHHHcCCC-C-EE-----ECcHHHHHHHHHH
Confidence 4566655 8899999999999988532 2 23 7888877765543
No 125
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=33.24 E-value=36 Score=27.10 Aligned_cols=44 Identities=7% Similarity=-0.041 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCcc--chHHHHHHHHhhcCC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGSH--LYPIITKLYQAWLVH 70 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~~ 70 (183)
..+.++++|+++++ +++|||.|+++.-+. .+|...-.|.+.++-
T Consensus 66 a~~Aa~~aL~~ag~-~~~dId~li~~t~t~~~~~P~~a~~v~~~LGl 111 (350)
T 4ewp_A 66 AVGAAREALERAGL-QGSDLDAVIVSTVTFPHATPSAAALVAHEIGA 111 (350)
T ss_dssp HHHHHHHHHHHTTC-CGGGCSEEEEECSCCSCSSSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEeccCCCCCCchHHHHHHHhCC
Confidence 56778999999998 599999998876553 578888888888853
No 126
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Probab=33.13 E-value=33 Score=28.15 Aligned_cols=44 Identities=5% Similarity=-0.146 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhc
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWL 68 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f 68 (183)
......++++|+++++ +++|||+|..-|.+|.+ |.--+.+.+.|
T Consensus 275 ~~~~~ai~~al~~Agl-~~~dId~ve~Hgtgt~~gD~~E~~al~~~~ 320 (408)
T 1j3n_A 275 KGAALAMARALKDAGI-APEQVGYINAHGTSTPVGDRAEVLAIKRVF 320 (408)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGCCEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHcCEEEEeCCcCcccCHHHHHHHHHHh
Confidence 3456788999999998 49999999999999874 33334445555
No 127
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=32.58 E-value=62 Score=24.73 Aligned_cols=54 Identities=17% Similarity=0.024 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHH
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAA 93 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa 93 (183)
.+++.+.+.+.+++. ++|.|+| |.|++|.+.+.|++.++ . .- +|+-+++++=+.
T Consensus 159 ~~~l~~~~~~~~~~~------gad~IVL--GCTh~p~l~~~i~~~~g-V---pv-----ID~~~a~~~~~~ 212 (245)
T 3qvl_A 159 QEKVRERCIRALKED------GSGAIVL--GSGGMATLAQQLTRELR-V---PV-----IDGVSAAVKMVE 212 (245)
T ss_dssp HHHHHHHHHHHHHHS------CCSEEEE--CCGGGGGGHHHHHHHHT-S---CE-----ECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------CCCEEEE--CCCChHHHHHHHHHHcC-C---eE-----EccHHHHHHHHH
Confidence 344444444544432 3555555 77899999999999995 2 23 677766655443
No 128
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=32.12 E-value=33 Score=27.49 Aligned_cols=59 Identities=7% Similarity=-0.151 Sum_probs=39.1
Q ss_pred ceeecHHHHHHhhhhHHHhHHH------HHHHHHhh----CCCCCCCCCCcEEeecC--ccchHHHHHHHHhh
Q psy5548 7 RRKAERQDLASAGEKPRSSTSE------IVIKWLDS----NPAGREGRFEDKQKAVG--SHLYPIITKLYQAW 67 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~------~~~~~l~~----~~~~~~~~i~~ViLvGG--ss~iP~V~~~l~~~ 67 (183)
+++++.++|+++++-|.+|+.+ ++..+-++ ..+ ..++|.++.||| ||+--.+.+.-++.
T Consensus 164 QTT~s~~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~l--a~~~D~miVVGg~nSSNT~rL~eia~~~ 234 (297)
T 3dnf_A 164 QTTQNEEFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKL--APEVDVMIIIGGKNSGNTRRLYYISKEL 234 (297)
T ss_dssp CTTCCHHHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHH--GGGSSEEEEESCTTCHHHHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHH--HhhCCEEEEECCCCCchhHHHHHHHHhc
Confidence 6789999999999988777321 11111110 112 246899999999 77877887776654
No 129
>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} SCOP: c.140.1.1
Probab=30.38 E-value=49 Score=25.30 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=26.4
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL 56 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~ 56 (183)
.+.+.+...+.++++.+.+. +. .++++|+||.
T Consensus 42 ~i~~~~~~~l~Ell~~a~l~-~G---~ifVvGcSTS 73 (235)
T 1v8d_A 42 GIRRAAQRAAEEFLQAFPMA-PG---SLFVLGGSTS 73 (235)
T ss_dssp HHHHHHHHHHHHHHHHSCCC-TT---CEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCC-CC---CEEEEeeeHH
Confidence 47788999999999999874 44 6899999885
No 130
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=29.93 E-value=69 Score=17.34 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=13.9
Q ss_pred hHHHhHHHHHHHHHhh
Q psy5548 21 KPRSSTSEIVIKWLDS 36 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~ 36 (183)
++++|..++++++|.+
T Consensus 17 ~F~~rsskviERAL~e 32 (38)
T 3l9k_W 17 RFVVRAGRVIERALSE 32 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4799999999999975
No 131
>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Probab=29.87 E-value=48 Score=27.28 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcC
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLV 69 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~ 69 (183)
.....++++|+++++ +++|||+|+.-|-+|.+ |.-.+.|.+.|+
T Consensus 284 ~~~~ai~~al~~agl-~~~dId~ve~Hgtgt~~gD~~E~~al~~~f~ 329 (424)
T 1tqy_A 284 EMAETIRVALDESRT-DATDIDYINAHGSGTRQNDRHETAAYKRALG 329 (424)
T ss_dssp HHHHHHHHHHHHHTC-CGGGCCEEECCCCCCHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHcCC-CHHHCCEEEecCccCcCcCHHHHHHHHHHhc
Confidence 456788999999998 49999999999988875 444456777775
No 132
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=28.99 E-value=45 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=23.1
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEe
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQK 50 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViL 50 (183)
.+.+.+.++++++++++++. ++||-.|++
T Consensus 48 ~I~~At~ELl~eii~~N~l~-~eDIvSv~F 76 (148)
T 1xho_A 48 EIVAETQKLLKEMAEKNGLE-EDDIISIIF 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-GGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHEEEEEE
Confidence 45677889999999999984 788777764
No 133
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2
Probab=28.77 E-value=48 Score=26.86 Aligned_cols=41 Identities=5% Similarity=-0.058 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~ 69 (183)
.... .++++|+++++. .+|||.++.-++++++ -+.+.+.++
T Consensus 253 ~~~~-~i~~aL~~agl~-~~dId~v~~H~~~~~i---~d~~~~~lg 293 (382)
T 1u0m_A 253 PLAP-ALKELAGEHGWD-ASDLDFYIVHAGGPRI---LDDLSTFLE 293 (382)
T ss_dssp HHHH-HHHHHHHTTSCC-SSCCSCCEEECSHHHH---HHHHHHHSC
T ss_pred HHHH-HHHHHHHHcCCC-HHHCCEEEECCCCHHH---HHHHHHHcC
Confidence 3455 889999999984 9999999999998764 245666663
No 134
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=28.75 E-value=12 Score=22.86 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=20.0
Q ss_pred CCceeecHHHHHHhhhhHHHhHHHHHHHHHhhC
Q psy5548 5 NGRRKAERQDLASAGEKPRSSTSEIVIKWLDSN 37 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~ 37 (183)
+++..|++++|..+++.+-.-..+-++.+++..
T Consensus 23 d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 55 (86)
T 2opo_A 23 NGDGKISSSELGDALKTLGSVTPDEVRRMMAEI 55 (86)
T ss_dssp TCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456788999988887765322333445555443
No 135
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus}
Probab=28.59 E-value=42 Score=27.91 Aligned_cols=44 Identities=9% Similarity=-0.141 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcC
Q psy5548 25 STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLV 69 (183)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~ 69 (183)
.....++++|+++++ +++|||+|++-|.+|.+ |.--+.|...|+
T Consensus 302 ~~~~ai~~Al~~Agl-~p~dId~ve~HgtgT~~~D~~E~~al~~~fg 347 (437)
T 2gqd_A 302 GGSRAMQAAMDDAGI-EPKDVQYLNAHGTSTPVGDLNEVKAIKNTFG 347 (437)
T ss_dssp HHHHHHHHHHHHHTC-CGGGCCEEECCCCSCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCC-CHhhCCEEEEECCCCcCcCHHHHHHHHHHHh
Confidence 456789999999998 49999999999998875 333345666664
No 136
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase, transferase; 1.75A {Neurospora crassa} PDB: 3eut_A* 3euq_A*
Probab=28.37 E-value=1.2e+02 Score=24.68 Aligned_cols=47 Identities=9% Similarity=-0.092 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
..+-..+.++++|+++++ .+++||.|+++--+ ..+|.....+...++
T Consensus 81 ~~~La~~Aa~~aL~~ag~-~~~dId~li~~t~t~~~~p~~a~~v~~~LG 128 (379)
T 3euo_A 81 GVPLAVEASRKAMAEARL-VPAQITHMVSTTCTDSANPGYDHYVAKELG 128 (379)
T ss_dssp THHHHHHHHHHHHHHHTC-CGGGCCEEEEECSSCCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEEEecCCCCCCCHHHHHHHHcC
Confidence 344566778889999998 49999998876433 246877788888775
No 137
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.14 E-value=42 Score=23.71 Aligned_cols=44 Identities=9% Similarity=0.013 Sum_probs=28.4
Q ss_pred CCCCcEEeecC--c--c-------chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVG--S--H-------LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGG--s--s-------~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.+.|.|++.|| . . .-|.+.++|+++....+. =-++.-|+.+.|.
T Consensus 65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~-----------i~aiC~G~~~La~ 119 (175)
T 3cne_A 65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKM-----------MIGHCAGAMMFDF 119 (175)
T ss_dssp GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCE-----------EEEETTHHHHHHH
T ss_pred ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCE-----------EEEECHHHHHHHH
Confidence 56789999999 3 2 346788888877743222 2236677766654
No 138
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A
Probab=27.98 E-value=1.1e+02 Score=24.86 Aligned_cols=50 Identities=12% Similarity=-0.140 Sum_probs=36.3
Q ss_pred hhhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 19 GEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 19 ~~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
.....+=..+.++++|+++++ ++++||.|+++..+ ..+|.....+...++
T Consensus 99 ~~~~~~La~~Aa~~aL~~ag~-~~~dId~vi~~t~t~~~~p~~a~~v~~~LG 149 (393)
T 3ov2_A 99 VEEIPRLAKEAAEKAIKEWGR-PKSEITHLVFCSISGIDMPGADYRLATLLG 149 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-CGGGCCEEEEEESSCCCBSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEEeCCCCCCCHHHHHHHHcC
Confidence 344555577788889999998 49999998875432 346777778887775
No 139
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A
Probab=27.32 E-value=53 Score=27.29 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch--HHHHHHHHhhcC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY--PIITKLYQAWLV 69 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i--P~V~~~l~~~f~ 69 (183)
......++++|+++++ +++||++|.+-|-+|.+ |.=-+.|...|+
T Consensus 301 ~~~~~ai~~Al~~Agl-~p~dId~ve~HgtgT~~gD~~E~~al~~~fg 347 (438)
T 2iwz_A 301 EGALRCMAAALKDAGV-QPEEISYINAHATSTPLGDAAENKAIKHLFK 347 (438)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGCCEEECCCCSCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCC-CHHHcCEEEecCCCCcccCHHHHHHHHHHHh
Confidence 4467789999999998 49999999999998875 333345666664
No 140
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A
Probab=27.32 E-value=58 Score=26.89 Aligned_cols=46 Identities=9% Similarity=-0.153 Sum_probs=35.5
Q ss_pred HhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchH--HHHHHHHhhcCC
Q psy5548 24 SSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYP--IITKLYQAWLVH 70 (183)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP--~V~~~l~~~f~~ 70 (183)
......++++|+++++ +++|||+|++-|-+|.+- .-.+.+.+.|++
T Consensus 296 ~~~~~ai~~al~~Agl-~~~dId~ve~Hgtgt~~~D~~E~~al~~~~g~ 343 (430)
T 1ox0_A 296 QGAIKAIKLALEEAEI-SPEQVAYVNAHGTSTPANEKGESGAIVAVLGK 343 (430)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGCCCEECCCCSCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCc-CHHHcCEEEEeCCcCcccCHHHHHHHHHHhCC
Confidence 3467789999999998 499999999999988763 223456677865
No 141
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Probab=26.78 E-value=44 Score=26.96 Aligned_cols=42 Identities=5% Similarity=-0.157 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEe-ecCccchHHHHHHH
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQK-AVGSHLYPIITKLY 64 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViL-vGGss~iP~V~~~l 64 (183)
.+..+.+.++++|+++++. .+|||.+++ --+..++..+.+.|
T Consensus 236 ~~~~~~~~i~~~L~~~gl~-~~did~~v~~hq~~~~~~~~~~~l 278 (357)
T 3s3l_A 236 YIDLLVAAKTQALEDAGTA-IEDIAHAVIPVSRRGTGHELHDLL 278 (357)
T ss_dssp HHHHHHHHHHHHHHHTTCC-GGGCSEEECCSCCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHCCEEEecCcChHHHHHHHHHc
Confidence 4567888999999999984 999999997 44444477776665
No 142
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=26.67 E-value=33 Score=31.75 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=13.5
Q ss_pred chhHHhhhHHHHHHHHh
Q psy5548 84 TCEAVAYGAAVQAAILH 100 (183)
Q Consensus 84 p~eaVA~GAa~~a~~l~ 100 (183)
.+.+-.+|||+.|+.-.
T Consensus 445 a~dgs~~GAA~laa~~~ 461 (917)
T 1cza_N 445 SESGSGKGAAMVTAVAY 461 (917)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHhHh
Confidence 47788899999987654
No 143
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Probab=26.60 E-value=1.3e+02 Score=24.37 Aligned_cols=49 Identities=8% Similarity=-0.087 Sum_probs=34.8
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+-..+.++++|+++++ .+++||.|++...+ ...|.....+...++
T Consensus 96 ~~~~~La~~Aa~~aL~~ag~-~~~~Id~li~~t~~~~~~p~~a~~v~~~lG 145 (387)
T 3a5r_A 96 KGVAELGKEAALKAIKEWGQ-PKSKITHLIVCCLAGVDMPGADYQLTKLLD 145 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-CGGGCCEEEEEESSCCEESCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEecCCCCCCcHHHHHHHHcC
Confidence 34455567778888999998 48999998764322 256777778888775
No 144
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=26.18 E-value=43 Score=24.27 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=28.1
Q ss_pred CCCCcEEeecCcc------chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSH------LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss------~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.+.|.|++.||.. .-|.+.++|++.+...++ =-++.-|+.+.|.
T Consensus 65 ~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~-----------i~aiC~G~~~La~ 114 (197)
T 2rk3_A 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGL-----------IATICAGPTALLA 114 (197)
T ss_dssp CCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCE-----------EEEETTTHHHHHH
T ss_pred cCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCE-----------EEEECHHHHHHHH
Confidence 5678999999952 236677788877643222 2236677766654
No 145
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=25.80 E-value=45 Score=26.64 Aligned_cols=43 Identities=5% Similarity=-0.178 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
.+....+.++++|+++++. .+|||.+++-.++.++ -+.+.+.+
T Consensus 244 ~~~~~~~~i~~~l~~~gl~-~~did~~v~Hq~~~~i---~~~~~~~l 286 (345)
T 3s21_A 244 GIKLAQKTFVAAKQVLGWA-VEELDQFVIHQVSRPH---TAAFVKSF 286 (345)
T ss_dssp HHHHHHHHHHHHHHHHCCC-GGGCSEEEECCSCHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHCCEEEeCCCCHHH---HHHHHHHc
Confidence 3455667888999999984 9999999998887664 34555555
No 146
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=25.53 E-value=60 Score=27.34 Aligned_cols=74 Identities=15% Similarity=-0.025 Sum_probs=37.6
Q ss_pred HhhhhHHHhHHHHHHHHHhhCC-CCCCCCCCcEEeecCcc--chHHHHHHHHhhcC----C-cccccCCCcccCCchhHH
Q psy5548 17 SAGEKPRSSTSEIVIKWLDSNP-AGREGRFEDKQKAVGSH--LYPIITKLYQAWLV----H-QANSLVGTKTRHDTCEAV 88 (183)
Q Consensus 17 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~i~~ViLvGGss--~iP~V~~~l~~~f~----~-~~~~~~~~~~~~~p~eaV 88 (183)
.++..+++|..+.+-..+...- ...++. -++.+||+- ..|.+++.+++.+. . ..+.. .-++.+.
T Consensus 365 ~va~~V~~RaA~lla~~ia~i~~~~~~~~--~~V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~------~l~~dgs 436 (451)
T 1bdg_A 365 YACEMVVKRAAYLAGAGIACILRRINRSE--VTVGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCL------RLSEDGS 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSE--EEEEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEE------EECTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc--eEEEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEE------EECCCcc
Confidence 4555566665555555443210 001211 255666665 45555555555431 1 12211 2357788
Q ss_pred hhhHHHHHHH
Q psy5548 89 AYGAAVQAAI 98 (183)
Q Consensus 89 A~GAa~~a~~ 98 (183)
.+|||+.|+.
T Consensus 437 ~iGAAllA~~ 446 (451)
T 1bdg_A 437 GKGAAAIAAS 446 (451)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8999998754
No 147
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=25.47 E-value=47 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=29.5
Q ss_pred CCCCCcEEeecCccc-----hHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 42 EGRFEDKQKAVGSHL-----YPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 42 ~~~i~~ViLvGGss~-----iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
..+.|.|++.||... -|.+.++|+++....++ =-++.-|+.+.|.
T Consensus 67 ~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~-----------iaaIC~g~~~La~ 116 (177)
T 4hcj_A 67 AVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKI-----------VAGIGSGVVIMAN 116 (177)
T ss_dssp GGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCE-----------EEEETTHHHHHHH
T ss_pred HhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCE-----------EEEecccHHHHHH
Confidence 567889999999542 36788888877643322 2346667766653
No 148
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}
Probab=25.44 E-value=62 Score=26.55 Aligned_cols=44 Identities=14% Similarity=0.028 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVH 70 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~ 70 (183)
..+.++++|+++++ ++++||.|++...+ ..+|.....+...++-
T Consensus 121 a~~Aa~~AL~~agi-~~~dId~vi~~t~t~~~~~p~~a~~v~~~LGl 166 (392)
T 3led_A 121 AVTAAEQAIERWGK-PRERIGAVLCACSNMQRAYPAMAIEVQNALGL 166 (392)
T ss_dssp HHHHHHHHHHHHCS-CGGGEEEEEEESSCCSCSBSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEecCCCCCccHHHHHHHHHhCC
Confidence 56678888999998 49999998874332 3567777778887753
No 149
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=25.24 E-value=49 Score=24.53 Aligned_cols=38 Identities=16% Similarity=-0.071 Sum_probs=28.1
Q ss_pred CCCcEEeecCccchH--HHHHHHHhhcCCcccccCCCcccCCchhHHhhhH
Q psy5548 44 RFEDKQKAVGSHLYP--IITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGA 92 (183)
Q Consensus 44 ~i~~ViLvGGss~iP--~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GA 92 (183)
++|.|+| |.|.+| .+.+.+++.+ +..+ +||-++++.=+
T Consensus 174 ~~d~IvL--gCT~~~t~~~~~~i~~~~-~vpv--------ids~~~~a~~~ 213 (228)
T 2eq5_A 174 GVEVIAL--GCTGMSTIGIAPVLEEEV-GIPV--------IDPVIASGAVA 213 (228)
T ss_dssp TCSEEEE--CCTHHHHHTCHHHHHHHH-SSCE--------ECHHHHHHHHH
T ss_pred CCCEEEE--CCCCcchHHHHHHHHHHc-CCCE--------EchHHHHHHHH
Confidence 5677777 889999 9999999888 3333 67777666544
No 150
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A
Probab=24.91 E-value=1.7e+02 Score=23.73 Aligned_cols=49 Identities=10% Similarity=-0.059 Sum_probs=35.7
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+=..+.++++|+++++ ++++||.|+++..+ -.+|.....+...++
T Consensus 94 ~~~~~La~~Aa~~AL~~ag~-~~~dId~li~~t~t~~~~p~~a~~v~~~LG 143 (387)
T 3oit_A 94 DAVPELAAEAAKKAIAEWGR-PAADITHLVVTTNSGAHVPGVDFRLVPLLG 143 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-CGGGCCEEEEEESSCCEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEeeCCCCcccHHHHHHHHhC
Confidence 34555577788899999998 49999998875332 346777777877775
No 151
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=24.90 E-value=24 Score=26.57 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=31.8
Q ss_pred CCCCCcEEeecCccc----------------hHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHHh
Q psy5548 42 EGRFEDKQKAVGSHL----------------YPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILH 100 (183)
Q Consensus 42 ~~~i~~ViLvGGss~----------------iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l~ 100 (183)
.++.|.|++.||..- -|.+.++|+++....++. -+|.-|+.+.|..+.
T Consensus 88 ~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~v-----------aaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 88 AAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPL-----------GFMCIAPAMLPKIFD 151 (232)
T ss_dssp GGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCE-----------EEETTGGGGHHHHCS
T ss_pred cccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEE-----------EEECHHHHHHHHHhc
Confidence 357899999999642 577888998877433222 236667766665544
No 152
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=24.88 E-value=30 Score=26.42 Aligned_cols=48 Identities=17% Similarity=-0.083 Sum_probs=26.8
Q ss_pred CCCcEEeecCccch-HHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHHH
Q psy5548 44 RFEDKQKAVGSHLY-PIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAIL 99 (183)
Q Consensus 44 ~i~~ViLvGGss~i-P~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~l 99 (183)
+.+.|+|-||-+.. +.+.+.++ ....+..+ ...+++.++|||..+...
T Consensus 214 dP~~IvlgG~i~~~~~~~~~~~~---~~~~i~~s-----~l~~~a~~~GAa~l~~~~ 262 (267)
T 1woq_A 214 SPELFIVGGGISKRADEYLPNLR---LRTPIVPA-----VLRNEAGIVGAAIEIALQ 262 (267)
T ss_dssp CCSEEEEESGGGGGGGGTGGGCC---CSSCEEEC-----SCSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeChhhcccHHHHHhhc---cCceEEEC-----CcCCcHHHHHHHHHHHhc
Confidence 34578888887664 33322222 11123223 334678999999887543
No 153
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2
Probab=24.76 E-value=1.9e+02 Score=23.26 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=33.1
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
..+-..+.++++|+++++ .+++|+.|+....+ -.+|.....+...++
T Consensus 84 ~~~la~~Aa~~aL~~agl-~~~~id~vi~~t~~~~~~p~~a~~v~~~lG 131 (382)
T 1u0m_A 84 AKSRVPAVIQRALDDAEL-LATDIDVIIYVSCTGFMMPSLTAWLINEMG 131 (382)
T ss_dssp HHHHHHHHHHHHHHHHTC-CGGGCSEEEEECSSSCCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHCCEEEEEecCCCCCCcHHHHHHHHhC
Confidence 345567788899999998 48999987654332 235666777887775
No 154
>1ee0_A 2-pyrone synthase; polyketide synthase, thiolase fold, transferase; HET: CAA; 2.05A {Gerbera hybrid cultivar} SCOP: c.95.1.2 c.95.1.2 PDB: 1qlv_A
Probab=24.49 E-value=1.6e+02 Score=23.94 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=34.3
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+-..+.++++|+++++ .+++||.|++...+ ...|.....+...++
T Consensus 105 ~~~~~La~~Aa~~aL~~agl-~~~~Id~vi~~t~~~~~~p~~a~~v~~~lG 154 (402)
T 1ee0_A 105 TGVPMLGKEAAVKAIDEWGL-PKSKITHLIFCTTAGVDMPGADYQLVKLLG 154 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-CGGGCCEEEEECSSCCEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEecCCCCCChHHHHHHHHcC
Confidence 34455567778888999998 48999998764322 246767777777775
No 155
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=24.49 E-value=1.6e+02 Score=21.08 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=34.3
Q ss_pred hhHHHhHHHHHHHHHhhCC-CCCCCCCCcEEeecCccchHHHHHHHHhh
Q psy5548 20 EKPRSSTSEIVIKWLDSNP-AGREGRFEDKQKAVGSHLYPIITKLYQAW 67 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~-~~~~~~i~~ViLvGGss~iP~V~~~l~~~ 67 (183)
+++.++..+-..+.|++.+ .. .++|+ ++-|=|+--||..-+.|.+.
T Consensus 24 ~~I~~~Ll~gA~~~l~~~G~v~-~~~i~-v~~VPGafEiP~aa~~la~~ 70 (156)
T 3nq4_A 24 QFINDSLLDGAVDALTRIGQVK-DDNIT-VVWVPGAYELPLATEALAKS 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-TTSEE-EEEESSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceE-EEEcCcHHHHHHHHHHHHhc
Confidence 3455566666677788887 63 56676 78899999999999988653
No 156
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=24.45 E-value=98 Score=24.42 Aligned_cols=42 Identities=12% Similarity=-0.077 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
++.+.+.++++|+++++. .+|||.+++--++.++ -+.+.+.+
T Consensus 223 ~~~~~~~i~~~l~~~gl~-~~did~~v~Hq~~~~i---~~~~~~~l 264 (323)
T 3il3_A 223 VRELSNVVEETLLANNLD-KKDLDWLVPHQANLRI---ITATAKKL 264 (323)
T ss_dssp HHHHHHHHHHHHHTTTCC-TTTCCEEEECCSCHHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHCCEEEEcCCCHHH---HHHHHHHc
Confidence 455667889999999984 9999999987777553 35556555
No 157
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Probab=24.42 E-value=63 Score=26.40 Aligned_cols=35 Identities=9% Similarity=-0.138 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccch
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLY 57 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~i 57 (183)
.++.+.+.++++|+++++. .+|||.+++-+.++++
T Consensus 205 ~~~~~~~~~~~~L~~agl~-~~did~~~~H~~~~~~ 239 (396)
T 1xpm_A 205 YIRSFQQSWNEYAKRQGKS-LADFASLCFHVPFTKM 239 (396)
T ss_dssp HHHHHHHHHHHHHHHHTCC-GGGCSEEEECCSSHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHCCEEEecCCchHH
Confidence 3555778889999999984 8999999999888775
No 158
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=24.27 E-value=48 Score=23.20 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCCcEEeecCcc-----chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSH-----LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss-----~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.+.|.|++.||.. .-|.+.++|++.+...++ =-++.-|+.+.|.
T Consensus 62 ~~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~-----------i~aiC~G~~~La~ 110 (168)
T 3l18_A 62 DEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKP-----------VASICHGPQILIS 110 (168)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCC-----------EEEETTTHHHHHH
T ss_pred hhCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCE-----------EEEECHhHHHHHH
Confidence 4578999999963 345677777777643222 2346677777664
No 159
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=24.20 E-value=87 Score=24.69 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
..+.++++|+++++ ++++||.|++.-.+ ...|.....+...++
T Consensus 69 a~~Aa~~al~~ag~-~~~~Id~vi~~t~~~~~~~p~~a~~v~~~lg 113 (333)
T 4dfe_A 69 AFIASQRAIEAADI-DPQSIDLIIVATSTPDFVFPSTACLLQNKLG 113 (333)
T ss_dssp HHHHHHHHHHHHTC-CGGGCCEEEEECSSCSSSBSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEeCCCCCCCCcHHHHHHHHhC
Confidence 66778889999998 48999988775332 346777788888885
No 160
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=23.59 E-value=54 Score=25.49 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=28.5
Q ss_pred CCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHH
Q psy5548 44 RFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQ 95 (183)
Q Consensus 44 ~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~ 95 (183)
.+|.|+| |.|.+|.+.+.+.... .+ .- +||-+++|+-+.-.
T Consensus 209 g~d~vIL--GCTh~pll~~~l~~~~---~v-~v-----iDs~~~~A~~~~~~ 249 (268)
T 3s81_A 209 GAQAIIM--GCTEIPLIVAGHERAI---AC-PM-----IDSTASLVRAAIRW 249 (268)
T ss_dssp TCSEEEE--CSTTHHHHHTTTGGGS---SS-CE-----EEHHHHHHHHHHHH
T ss_pred CCCEEEE--CccCHHHHHHHHhcCC---CC-eE-----EccHHHHHHHHHHH
Confidence 4667766 9999999998765422 12 23 78888888776543
No 161
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=23.02 E-value=51 Score=22.95 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.0
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEe
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQK 50 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViL 50 (183)
.+.+.+.+++..+++.+++. .+||-.|++
T Consensus 19 ~I~~at~eLl~~i~~~N~l~-~~dIvSv~F 47 (127)
T 1dbf_A 19 EILQKTKQLLEKIIEENHTK-PEDVVQMLL 47 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-GGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHEEEEEE
Confidence 45677889999999999984 788777764
No 162
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide synthase, transferase; 2.00A {Huperzia serrata} PDB: 3awj_A
Probab=22.96 E-value=1.9e+02 Score=23.53 Aligned_cols=49 Identities=12% Similarity=-0.080 Sum_probs=34.6
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+-..+.++++|+++++ .+++||.|++...+ ...|.....+...++
T Consensus 113 ~~~~~La~~Aa~~aL~~agl-~~~~Id~vi~~t~~~~~~p~~a~~v~~~lG 162 (402)
T 3awk_A 113 LEVPKLAKEAAISAIKQWGQ-PKSKITHLVFATTSGVDMPGADFQLAKLLG 162 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-CGGGCCEEEEEECSCCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEEeCCCcCChHHHHHHHHcC
Confidence 34455567778888999998 48999998864321 256777777887775
No 163
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*
Probab=22.84 E-value=1.2e+02 Score=23.88 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVH 70 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~ 70 (183)
..+.++++|+++++ ++++||.|++.-.+ ...|.....+...++-
T Consensus 56 a~~Aa~~aL~~ag~-~~~~Id~li~~t~~~~~~~p~~a~~v~~~lGl 101 (321)
T 3il6_A 56 CHQVAKQLLEKSGK-QASEIDFILVATVTPDFNMPSVACQVQGAIGA 101 (321)
T ss_dssp HHHHHHHHHHHHTC-CGGGCCEEEEECSSCSCSSSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEeCCCCcCCCcHHHHHHHHcCC
Confidence 56677888999998 48999988875432 2467777788888853
No 164
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Probab=22.82 E-value=1.5e+02 Score=24.27 Aligned_cols=49 Identities=8% Similarity=-0.154 Sum_probs=33.8
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+=..+.++++|+++++ .+++||.|++.-.+ ...|.....+...++
T Consensus 123 ~~~~~La~~Aa~~AL~~agl-~~~~Id~li~~t~~~~~~p~~a~~v~~~lG 172 (413)
T 1xes_A 123 MEVPRLAKEAAEKAIQEWGQ-SKSGITHLIFCSTTTPDLPGADFEVAKLLG 172 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-CGGGCCEEEEEESCCCEESCHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEEeCCCccchHHHHHHHHcC
Confidence 34445567778888999998 48999988764332 245666677777774
No 165
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}
Probab=22.74 E-value=1.6e+02 Score=24.76 Aligned_cols=47 Identities=9% Similarity=-0.092 Sum_probs=35.3
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
..+-..+.++++|+++++ .+++||.|+++--+ ..+|.....|...++
T Consensus 110 a~~La~~Aa~~AL~~agi-~~~dId~li~~t~t~~~~P~~a~~v~~~LG 157 (465)
T 3e1h_A 110 GVPLAVEASRKAMAEARL-VPAQITHMVSTTCTDSANPGYDHYVAKELG 157 (465)
T ss_dssp THHHHHHHHHHHHHHHTC-CGGGCCEEEEECSSCCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHCCEEEEEeeCCCCCCcHHHHHHHHhC
Confidence 345567778899999998 49999999876432 246888888888875
No 166
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}
Probab=22.54 E-value=83 Score=25.76 Aligned_cols=35 Identities=9% Similarity=-0.066 Sum_probs=27.9
Q ss_pred hHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccc
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHL 56 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~ 56 (183)
..+..+.+.++++|+++++. .+|||.+++--++.+
T Consensus 288 ~a~~~~~~~i~~~L~~~gl~-~~dId~~v~Hqan~~ 322 (392)
T 3led_A 288 EVVPLVSEMIIEHAREIGID-PHGLKRMWLHQANIN 322 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-GGGCSEEEECSSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHCcEEEEcCCCHH
Confidence 34556777899999999984 999999998777654
No 167
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=22.53 E-value=90 Score=25.12 Aligned_cols=43 Identities=9% Similarity=-0.069 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
....+.+.++++|+++++. .+|||.+++--++.+| -+.+.+.+
T Consensus 252 ~~~~~~~~i~~~L~~~gl~-~~did~~v~Hq~n~~i---~~~~~~~l 294 (359)
T 3h78_A 252 ASQTLVRIAGEMLAAHELT-LDDIDHVICHQPNLRI---LDAVQEQL 294 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCC-GGGCSEEEECCSCHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHCCEEEECCCCHHH---HHHHHHHh
Confidence 3455778899999999984 9999999998777654 34555544
No 168
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=22.47 E-value=36 Score=24.92 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=13.3
Q ss_pred CCceeecHHHHHHhhhhHH
Q psy5548 5 NGRRKAERQDLASAGEKPR 23 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~ 23 (183)
|+...|+++||..++..+.
T Consensus 141 d~dG~Is~~El~~~l~~~~ 159 (214)
T 2l4h_A 141 DDDGTLNREDLSRLVNCLT 159 (214)
T ss_dssp TCSSCBCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHh
Confidence 4556788888887776653
No 169
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}
Probab=22.26 E-value=98 Score=24.75 Aligned_cols=44 Identities=14% Similarity=-0.072 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcCC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLVH 70 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~~ 70 (183)
..+.++++|+++++ ++++||.|++...+ ...|.....+...++-
T Consensus 70 a~~Aa~~aL~~agi-~~~~Id~vi~~t~~~~~~~p~~a~~v~~~lGl 115 (354)
T 4efi_A 70 CRKAGEKLLAGLGW-QADSIDALIFVSQTPNYRLPATAFVLQAELDL 115 (354)
T ss_dssp HHHHHHHHHHHHTC-CGGGCCEEEEECSSCSCSSSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEeCCCCCCCCcHHHHHHHHcCc
Confidence 66778889999998 48999998876433 3467777888888853
No 170
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=21.97 E-value=59 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred hHHHhHHHHHHHHHhhCCCCCC-CCCCcEEe
Q psy5548 21 KPRSSTSEIVIKWLDSNPAGRE-GRFEDKQK 50 (183)
Q Consensus 21 ~l~~~~~~~~~~~l~~~~~~~~-~~i~~ViL 50 (183)
.+.+.+.+++..+++.+++. . +||-.|++
T Consensus 18 ~I~~at~eLl~~i~~~N~l~-~~~divSv~F 47 (122)
T 1ufy_A 18 AIHQATRELLLKMLEANGIQ-SYEELAAVIF 47 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-CGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCC-ChHhEEEEEE
Confidence 45677889999999999984 7 77777764
No 171
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=21.86 E-value=61 Score=25.08 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=16.8
Q ss_pred CCcEEeecCccchHHHHHHHH
Q psy5548 45 FEDKQKAVGSHLYPIITKLYQ 65 (183)
Q Consensus 45 i~~ViLvGGss~iP~V~~~l~ 65 (183)
-..+.|.||||-.+..+.+.+
T Consensus 38 ~~~l~LsgGstp~~ly~~L~~ 58 (267)
T 3css_A 38 PVVLALSGGSTPKRLYEELHE 58 (267)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 347899999999998877654
No 172
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=21.86 E-value=51 Score=25.22 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=32.0
Q ss_pred CCCCCcEEeecCccc-----------------hHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHHH
Q psy5548 42 EGRFEDKQKAVGSHL-----------------YPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAI 98 (183)
Q Consensus 42 ~~~i~~ViLvGGss~-----------------iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~~ 98 (183)
.++.|.|++.||... -|.+.+.|++++...++ --++.-|+.+.|..
T Consensus 105 ~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~-----------IaaIC~G~~~La~a 167 (242)
T 3l3b_A 105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKP-----------IGAVCISPAVVVAL 167 (242)
T ss_dssp GGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCC-----------EEEETTHHHHHHHH
T ss_pred cccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCE-----------EEEECHHHHHHHHh
Confidence 467899999999642 38888999888743322 23467788777654
No 173
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A*
Probab=21.73 E-value=2e+02 Score=23.36 Aligned_cols=49 Identities=8% Similarity=-0.066 Sum_probs=34.0
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+=..+.++++|+++++ .+++||.|++...+ ...|.....+...++
T Consensus 113 ~~~~~La~~Aa~~aL~~ag~-~~~~Id~vi~~t~~~~~~p~~a~~v~~~lG 162 (406)
T 2d3m_A 113 PGVPALGTEAAVKAIEEWGR-PKSEITHLVFCTSCGVDMPSADFQCAKLLG 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-CGGGCCEEEEEESSCCEESCHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEecCCCCCCCHHHHHHHHcC
Confidence 34455567778888999998 48999988764332 245666677777774
No 174
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A {Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A 1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A* 1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A* 1z1e_A* 1z1f_A*
Probab=21.72 E-value=1.7e+02 Score=23.55 Aligned_cols=49 Identities=10% Similarity=-0.068 Sum_probs=33.8
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+-..+.++++|+++++ ++++||.|++...+ ...|.....+...++
T Consensus 100 ~~~~~La~~Aa~~aL~~agl-~~~~Id~li~~t~~~~~~p~~a~~v~~~lG 149 (389)
T 1i88_A 100 VEVPRLGKEAAVKAIKEWGQ-PKSKITHLIVCTTSGVDMPGADYQLTKLLG 149 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-CGGGCCEEEEEESSCCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEEECCCCCCchHHHHHHHHcC
Confidence 33445567778888999998 48999998764322 245667777777775
No 175
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=21.60 E-value=47 Score=23.78 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=27.7
Q ss_pred CCCCcEEeecCc------cchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGS------HLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGs------s~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.+.|.|++.||. ..-|.+.++|++.+...++. -++.-|+.+.|.
T Consensus 74 ~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i-----------~aiC~G~~~La~ 123 (190)
T 2vrn_A 74 SDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPI-----------AAICHGPWSLSE 123 (190)
T ss_dssp GGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCE-----------EEC-CTTHHHHH
T ss_pred hhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEE-----------EEECHhHHHHHh
Confidence 467899999995 23466888888877433222 235566666554
No 176
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=21.33 E-value=1.3e+02 Score=23.64 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
..+.++++|+++++ ++++||.|++...+ ...|.....+...++
T Consensus 62 a~~Aa~~aL~~ag~-~~~~Id~vi~~t~~~~~~~p~~a~~v~~~lG 106 (323)
T 3il3_A 62 GFEAAKNAIEAAQI-NPQDIELIIVATTSHSHAYPSAACQVQGLLN 106 (323)
T ss_dssp HHHHHHHHHHHHCC-CGGGCCEEEEECSCCSCSSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEeCCCCCCCccHHHHHHHHhC
Confidence 66778889999998 48999998875432 246777777887775
No 177
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=21.18 E-value=1.9e+02 Score=19.48 Aligned_cols=47 Identities=6% Similarity=-0.061 Sum_probs=31.5
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCc-EEeecCccchHHHHHHHHhhcCC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFED-KQKAVGSHLYPIITKLYQAWLVH 70 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~-ViLvGGss~iP~V~~~l~~~f~~ 70 (183)
...+.+-++.+|+.++.. .++|-. -+.+-.....+.+.+...++|++
T Consensus 42 ~~~~l~ni~~~L~~aG~~-l~~Vvk~~vyl~d~~df~~~n~v~~~~f~~ 89 (126)
T 2ewc_A 42 INGAFDEMERRLALVGLT-LDAVVQMDCLFRDVWNIPVMEKMIKERFNG 89 (126)
T ss_dssp HHHHHHHHHHHHHTTTCC-GGGEEEEEEEESSGGGHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCCC-HHHEEEEEEEECChhHHHHHHHHHHHHcCC
Confidence 344555567778888763 555432 23455678889999999999964
No 178
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=21.16 E-value=70 Score=23.78 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHH
Q psy5548 27 SEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAV 94 (183)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~ 94 (183)
.+.+.+.++... ...+|.|+| |.|.+|.+.+.++ . + + .. +||-++.|.=+.-
T Consensus 172 ~~~l~~~~~~l~---~~g~d~iiL--GCT~~p~l~~~~~--~-~--v-pv-----iDs~~~~a~~~~~ 223 (228)
T 1jfl_A 172 RELLLKTAKILE---ERGAECIIA--GCTEVSVVLKQDD--L-K--V-PL-----IDPMDVIAEVAVK 223 (228)
T ss_dssp HHHHHHHHHHHH---HTTCSEEEE--CSHHHHHHCCGGG--C-S--S-CE-----ECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCCcCEEEE--CCCChHhhhhhhc--C-C--C-CE-----EChHHHHHHHHHH
Confidence 444444444431 124667766 8999999977664 2 2 2 23 7888877765543
No 179
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type transferase; 1.90A {Marchantia polymorpha}
Probab=21.00 E-value=1.8e+02 Score=23.79 Aligned_cols=49 Identities=10% Similarity=-0.073 Sum_probs=34.1
Q ss_pred hhHHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc-cchHHHHHHHHhhcC
Q psy5548 20 EKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS-HLYPIITKLYQAWLV 69 (183)
Q Consensus 20 ~~l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs-s~iP~V~~~l~~~f~ 69 (183)
....+-..+.++++|+++++ .+++||.|++...+ ...|.....+...++
T Consensus 118 ~~~~~La~~Aa~~aL~~agl-~~~dId~li~~t~~~~~~p~~a~~v~~~LG 167 (413)
T 2p0u_A 118 AQVPKLAKEASMNAIKEWGR-PKSEITHIVMATTSGVNMPGAELATAKLLG 167 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-CGGGCCEEEEEESSCCCBSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCc-CHHHCCEEEEEecCCcccCcHHHHHHHHhC
Confidence 34445567778888999998 48999998864322 246766777777775
No 180
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A
Probab=20.81 E-value=78 Score=25.51 Aligned_cols=43 Identities=2% Similarity=-0.080 Sum_probs=31.7
Q ss_pred HHHhHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHhhc
Q psy5548 22 PRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68 (183)
Q Consensus 22 l~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~~f 68 (183)
......+.++++|+++++. .+|||.+++--++.++ .+.+.+.+
T Consensus 264 ~~~~~~~~i~~~L~~~gl~-~~did~~v~Hq~n~~i---~~~~~~~L 306 (365)
T 3gwa_A 264 SLAEVPRAADRLLALAGEP-RENIDCFVLHQANRFM---LDALRKKM 306 (365)
T ss_dssp HHHHHHHHHHHHHHHHTCC-GGGCSEEEECCCCHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHCCEEEEcCCCHHH---HHHHHHHh
Confidence 3556678889999999984 9999999998776654 24444444
No 181
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=20.60 E-value=38 Score=22.74 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.4
Q ss_pred CCceeecHHHHHHhhhhH
Q psy5548 5 NGRRKAERQDLASAGEKP 22 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l 22 (183)
++...|++++|..++..+
T Consensus 52 d~~G~I~~~el~~~l~~~ 69 (135)
T 3h4s_E 52 PERHLITAESLRRNSGIL 69 (135)
T ss_dssp TTTTBBCHHHHHHHGGGG
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 445667777777766554
No 182
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=20.43 E-value=47 Score=23.62 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=35.4
Q ss_pred CCceeecHHHHHHhhhhHHH------------------hHHHHHHHHHhhCCCCCCCCCCcEEeecCccchHHHHHHHHh
Q psy5548 5 NGRRKAERQDLASAGEKPRS------------------STSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66 (183)
Q Consensus 5 ~~~~~itR~~fe~l~~~l~~------------------~~~~~~~~~l~~~~~~~~~~i~~ViLvGGss~iP~V~~~l~~ 66 (183)
++...|++++|..++..+.. ...+.+..+++.........|+.-.++---..-|.+.+++..
T Consensus 107 d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~ 186 (204)
T 1jba_A 107 DRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQM 186 (204)
T ss_dssp SCSSCBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHHS
T ss_pred CCCCcCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHHh
Confidence 45678999999998887632 233455666654432112334443343333455666666554
Q ss_pred hc
Q psy5548 67 WL 68 (183)
Q Consensus 67 ~f 68 (183)
.+
T Consensus 187 ~~ 188 (204)
T 1jba_A 187 DL 188 (204)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 183
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=20.40 E-value=79 Score=23.25 Aligned_cols=44 Identities=11% Similarity=-0.093 Sum_probs=28.7
Q ss_pred CCCCcEEeecCcc----chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSH----LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss----~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.+.|.|++.||.. .-|.+.++|++.+...+. =-++.-|+.+.|.
T Consensus 73 ~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~-----------iaaiC~G~~~La~ 120 (212)
T 3efe_A 73 ESKDLLILPGGTTWSEEIHQPILERIGQALKIGTI-----------VAAICGATDALAN 120 (212)
T ss_dssp CTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCE-----------EEEETHHHHHHHH
T ss_pred cCCCEEEECCCCccccccCHHHHHHHHHHHHCCCE-----------EEEEcHHHHHHHH
Confidence 4789999999964 457788888887743222 2235566666553
No 184
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=20.27 E-value=81 Score=23.22 Aligned_cols=44 Identities=9% Similarity=-0.015 Sum_probs=29.5
Q ss_pred CCCCcEEeecCcc---chHHHHHHHHhhcCCcccccCCCcccCCchhHHhhhHHHHHH
Q psy5548 43 GRFEDKQKAVGSH---LYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAA 97 (183)
Q Consensus 43 ~~i~~ViLvGGss---~iP~V~~~l~~~f~~~~~~~~~~~~~~~p~eaVA~GAa~~a~ 97 (183)
.+.|.|++.||.. .-|.+.++|++.....+. =-++.-|+.+.|.
T Consensus 62 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~-----------iaaiC~G~~~La~ 108 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIP-----------IAAICGAVDFLAK 108 (206)
T ss_dssp SCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCC-----------EEEETHHHHHHHH
T ss_pred cCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCE-----------EEEECHHHHHHHH
Confidence 3678999999954 457888888887743222 2236667766654
No 185
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=20.08 E-value=2.2e+02 Score=19.64 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=25.6
Q ss_pred ceeecHHHHHHhhhhHHHhHHHHHHHHHhhC
Q psy5548 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSN 37 (183)
Q Consensus 7 ~~~itR~~fe~l~~~l~~~~~~~~~~~l~~~ 37 (183)
.+++|-.+|.+++...++.+.+.++++.++.
T Consensus 6 ~~~m~e~ef~~lad~~L~~ie~~le~~~d~~ 36 (129)
T 3t3l_A 6 PGSLDETTYERLAEETLDSLAEFFEDLADKP 36 (129)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3578999999999999999999999988764
No 186
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=20.08 E-value=1.5e+02 Score=23.50 Aligned_cols=43 Identities=14% Similarity=-0.050 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 26 TSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 26 ~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
..+.++++|+++++ ++++||.|++.-.+ ...|.....+...++
T Consensus 72 a~~Aa~~al~~ag~-~~~~Id~vi~~t~~~~~~~p~~a~~v~~~lG 116 (345)
T 3s21_A 72 ATQAARKALIDANI-GIEKIGLLINTSVSRDYLEPSTASIVSGNLG 116 (345)
T ss_dssp HHHHHHHHHHHHTC-CGGGCCEEEECCSCCSCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CHHHCCEEEEEeCCCCCCCChHHHHHHHHhC
Confidence 66778889999998 49999987764322 235666777777774
No 187
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=20.07 E-value=1.2e+02 Score=23.19 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=31.9
Q ss_pred HHhHHHHHHHHHhhCCCCCCCCCCcEEeecCc--cchHHHHHHHHhhcC
Q psy5548 23 RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGS--HLYPIITKLYQAWLV 69 (183)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~i~~ViLvGGs--s~iP~V~~~l~~~f~ 69 (183)
.+-..+.+.++|+++++ .+++||.|++...+ ...|.+-..+...++
T Consensus 51 ~~l~~~a~~~al~~ag~-~~~~id~v~~~~~~~~~~~~~~a~~v~~~lg 98 (309)
T 2ebd_A 51 TYMATQAAKEALREANL-SPEELDLIILATLTPQKRFPSTACLVQAQLK 98 (309)
T ss_dssp HHHHHHHHHHHHHHHTC-CGGGCSEEEEECSSCSSSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC-CHHHCCEEEEEcCCCCCCCCcHHHHHHHHhC
Confidence 44466778889999998 48899987764332 224556677777775
Done!