RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5548
(183 letters)
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 197 bits (503), Expect = 3e-60
Identities = 80/96 (83%), Positives = 91/96 (94%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVAYGAAVQAAIL G++S +VQDLLLLDVTPLSLG+ETAGGVMT LI+RNTTIPTK++Q
Sbjct: 369 EAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQ 428
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
FTTY+DNQPGVLIQV+EGERAMTKDNNLLGKF ++
Sbjct: 429 IFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLD 464
Score = 42.5 bits (100), Expect = 5e-05
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 30 VIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66
++WL+ N + FE KQK V S PI+TK+YQA
Sbjct: 579 ALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQA 615
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 169 bits (431), Expect = 4e-50
Identities = 64/94 (68%), Positives = 74/94 (78%), Gaps = 2/94 (2%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVA GAAVQA +L G +V+D+LLLDVTPLSLGIET GGVMT LI RNTTIPTK++Q
Sbjct: 361 EAVAIGAAVQAGVLSGT--FDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFK 179
F+T +DNQ V IQVY+GER M DN LLG F+
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFE 452
Score = 26.8 bits (60), Expect = 7.6
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 9 KAERQDLASAGEKPRSSTSEIVIKWLDSNPAGRE-GRFEDKQKAVGSHLYPIITKLYQ 65
E D +K E I+WL G + E K + + + PI ++YQ
Sbjct: 544 LKEEGDKLPEADK---KKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERMYQ 598
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 167 bits (426), Expect = 4e-49
Identities = 60/96 (62%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
E VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIPTK++Q
Sbjct: 362 EVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQ 417
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
F+T +DNQP V I V +GER M DN LG+F +
Sbjct: 418 VFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLT 453
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 153 bits (389), Expect = 4e-44
Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 4/96 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
E VA GAA+Q +L GD V+D+LLLDVTPLSLGIET GGVMT LI+RNTTIPTK++Q
Sbjct: 360 EVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQ 415
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
F+T +DNQP V I V +GER M DN LG+F++
Sbjct: 416 VFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELT 451
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 137 bits (348), Expect = 2e-38
Identities = 58/96 (60%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
E VA GAAVQA +L G EV+D+LLLDVTPLSLG+ET GGVMT +I RNTTIPTK+++
Sbjct: 364 EVVAIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSE 419
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
F+T DNQ V I V +GER + KDN LG F+++
Sbjct: 420 VFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLD 455
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 136 bits (345), Expect = 8e-38
Identities = 60/93 (64%), Positives = 70/93 (75%), Gaps = 4/93 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVA GAA+QA +L G EV+DLLLLDVTPLSLGIET G V T +I+RNTTIPT ++Q
Sbjct: 364 EAVALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQ 419
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 178
F+T +D Q V I V +GERAM KDN LGKF
Sbjct: 420 VFSTATDGQTSVEIHVLQGERAMAKDNKSLGKF 452
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 134 bits (338), Expect = 7e-37
Identities = 61/95 (64%), Positives = 74/95 (77%), Gaps = 4/95 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVA GAA+QA +L G E++DLLLLDVTPLSLGIET GGV T LI RNTTIPTK++Q
Sbjct: 403 EAVAMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
F+T +DNQ V I+V++GER M DN LLG+F +
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDL 493
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 130 bits (330), Expect = 1e-35
Identities = 59/112 (52%), Positives = 73/112 (65%), Gaps = 10/112 (8%)
Query: 75 LVGTKTRHDTC------EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV 128
LV T + E VA GAA+QA IL G E++DLLLLDVTPLSLG+ET GGV
Sbjct: 347 LVRTLIPREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGV 402
Query: 129 MTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
M LI RNTTIP +++ F+T +NQ V I V++GER M DN LG+FK+
Sbjct: 403 MKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKL 454
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 125 bits (317), Expect = 4e-34
Identities = 55/93 (59%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVA GAA+QAA+L G+ D+LLLDV PLSLGIET GGV T +I+RNTTIP K++Q
Sbjct: 345 EAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQ 400
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 178
F+T +D Q V I V++GER M DN LG+F
Sbjct: 401 EFSTAADGQTAVAIHVFQGEREMAADNKSLGRF 433
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 122 bits (310), Expect = 6e-33
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
+ VA GAA+QA IL G+K + D+LLLDV PLSLG+ET GG++ +I RNTTIP + Q
Sbjct: 364 KVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQ 421
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 178
FTT+ D Q + I V +GER + D L +F
Sbjct: 422 EFTTFKDGQTAMAIHVVQGERELVADCRSLARF 454
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 121 bits (307), Expect = 1e-32
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
+ VA GAA+QA +L G++ DLLLLDVTPLSLGIET GG++ +I RNT IP + Q
Sbjct: 348 QVVALGAAIQADLLAGNRIGN--DLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQ 405
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 178
FTTY D Q ++I V +GER + +D L +F
Sbjct: 406 EFTTYKDGQTAMVIHVVQGERELVEDCRSLARF 438
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 116 bits (292), Expect = 1e-30
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
E VA GAAVQA +L G EV D++LLDVTPLSLG+ET GGVMT +I RNTT+PT +++
Sbjct: 401 EVVALGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSE 456
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
F+T +D Q V I V +GER +DN LG F+++
Sbjct: 457 VFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLD 492
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 107 bits (269), Expect = 1e-27
Identities = 55/95 (57%), Positives = 71/95 (74%), Gaps = 4/95 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVA GAA +L GD V+ L+LLDVTPLSLGIET GGV T +I +NTTIPTK++Q
Sbjct: 389 EAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQ 444
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKM 180
TF+T +DNQ V I+V++GER M DN ++G+F +
Sbjct: 445 TFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDL 479
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 88.8 bits (220), Expect = 6e-21
Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 12/130 (9%)
Query: 53 GSHLYPIITK-LYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGDKSEEVQDLL 111
G+ P+I LY+A+ V + + D +AV +GAA+QA L + L
Sbjct: 317 GATRIPLIKDELYKAFKVDILSDI-------DPDKAVVWGAALQAENL----IAPHTNSL 365
Query: 112 LLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKD 171
L+DV PLSLG+E GG++ +I RNT IP + FTTY+DNQ G+ + +GER M D
Sbjct: 366 LIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAAD 425
Query: 172 NNLLGKFKME 181
L +F+++
Sbjct: 426 CRSLARFELK 435
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 86 EAVAYGAAVQAAILH 100
EAVAYGAAVQAAIL
Sbjct: 362 EAVAYGAAVQAAILS 376
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 30.4 bits (69), Expect = 0.48
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 86 EAVAYGAAVQAA 97
EAVAYGAAVQA
Sbjct: 363 EAVAYGAAVQAG 374
>gnl|CDD|215491 PLN02906, PLN02906, xanthine dehydrogenase.
Length = 1319
Score = 29.3 bits (66), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 139 IPTKQTQTFTTYSDNQPGVLIQVY 162
+PTK +FTT NQ G L+ VY
Sbjct: 997 VPTKFGISFTTKFMNQAGALVHVY 1020
>gnl|CDD|163544 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutase. Members of
this protein family are tyrosine 2,3-aminomutase. It is
variable from member to member as to whether the
(R)-beta-Tyr or (S)-beta-Tyr is the preferred product
from L-Tyr. This enzyme tends to occur in secondary
metabolite biosynthesis systems, as in the production of
chondramides in Chondromyces crocatus.
Length = 507
Score = 28.7 bits (64), Expect = 2.2
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 118 LSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGV---LIQVYEGERAMTKDNNL 174
L G A TAL+ N TI TQ+ + DNQ V LI R ++ +N +
Sbjct: 392 LHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLIAARNARRVLSNNNKI 451
Query: 175 L 175
L
Sbjct: 452 L 452
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 86 EAVAYGAAVQAAIL 99
E VA GAA+Q +L
Sbjct: 363 EVVAIGAAIQGGVL 376
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 28.0 bits (63), Expect = 2.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 83 DTCEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 116
DT EA A GAA+QAA E+ D+ L ++
Sbjct: 426 DTEEAAALGAAIQAAWCL--TGEDGADVALAELC 457
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 27.9 bits (63), Expect = 2.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 86 EAVAYGAAVQAA 97
E VA GAA+QA
Sbjct: 328 EVVALGAAIQAG 339
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 27.7 bits (62), Expect = 3.5
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 65 QAWLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGDKS 104
AW A+ + E A GAA+ AA G+K
Sbjct: 404 PAWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKD 443
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 27.9 bits (62), Expect = 4.1
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 79 KTRHDTCEAVAYGAAVQAAILHGDKSEEVQDLLLLDVT 116
++ +D EA+ Y AV A + D++E +D L LD T
Sbjct: 903 RSLND--EAIRYATAVLAWLEVVDEAERAEDELGLDGT 938
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 27.5 bits (62), Expect = 4.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 86 EAVAYGAAVQAAIL 99
EAVA G A+Q A+L
Sbjct: 367 EAVARGCALQCAML 380
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and
related proteins; solute-binding domain. Human SGLT4
(hSGLT4) has been reported to be a low-affinity glucose
transporter with unusual sugar selectivity: it
transports D-mannose but not galactose or
3-O-methyl-D-glucoside. It is encoded by the SLC5A9 gene
and is expressed in intestine, kidney, liver, brain,
lung, trachea, uterus, and pancreas. hSLGT4 is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5 )transporter
family.
Length = 605
Score = 27.2 bits (60), Expect = 5.5
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 7 RRKAERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLY 64
RR A Q+L G I I W+ + G+ D +AV S+L P IT L+
Sbjct: 382 RRNASEQELMVVGRVFILILVVISILWIPIIQSANSGQLFDYIQAVTSYLSPPITALF 439
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 27.1 bits (61), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 88 VAYGAAVQAAILHGDKSEEVQDLLLLDV 115
A GAA++ +H D EV+D+L LD+
Sbjct: 429 AAAGAAIRYRAVHRD---EVEDILALDI 453
>gnl|CDD|117872 pfam09330, Lact-deh-memb, D-lactate dehydrogenase, membrane
binding. Members of this family are predominantly found
in prokaryotic D-lactate dehydrogenase, forming the
cap-membrane-binding domain, which consists of a large
seven-stranded antiparallel beta-sheet flanked on both
sides by alpha-helices. They allow for membrane
association.
Length = 291
Score = 26.8 bits (60), Expect = 6.3
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 88 VAYGAAVQAAILHGDKSEEVQDLLLLDV 115
A GAA++ +H +EV+D++ LD+
Sbjct: 160 AAAGAAIRYRAVH---RDEVEDIVALDI 184
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 26.8 bits (60), Expect = 7.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 86 EAVAYGAAVQAA 97
EAVA GAA+ AA
Sbjct: 358 EAVALGAAIYAA 369
>gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 347
Score = 26.4 bits (59), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLL 111
E VAYG VQ A+ + E+++LL
Sbjct: 266 EKVAYGILVQLALEG--REAEIEELL 289
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,876,084
Number of extensions: 776688
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 38
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.3 bits)