RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5548
(183 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 222 bits (569), Expect = 9e-71
Identities = 90/93 (96%), Positives = 90/93 (96%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVAYGAAVQAAIL GDKSE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQ
Sbjct: 367 EAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQ 426
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 178
TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF
Sbjct: 427 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 459
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 164 bits (417), Expect = 1e-52
Identities = 52/68 (76%), Positives = 58/68 (85%)
Query: 114 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 173
DV PLSLGIETAGGVMT LI RNT IPTK +TFTTY+DNQPGV IQVYEGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 174 LLGKFKME 181
LG F++
Sbjct: 64 RLGTFELS 71
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 163 bits (416), Expect = 2e-52
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 114 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 173
DV L+LGIET GGVMT LIKRNT IPTK++Q F+T DNQP V+I+VYEGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 174 LLGKFKME 181
LLGKF++
Sbjct: 64 LLGKFELT 71
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 174 bits (443), Expect = 1e-51
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 8/97 (8%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGV----MTALIKRNTTIPT 141
EA+A GAA AI V+ D+ P S+ V + ++ P+
Sbjct: 370 EAIAKGAAFICAIHSPT--LRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPS 427
Query: 142 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKF 178
+ T D T + + +
Sbjct: 428 TKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANW 462
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 11 ERQDLASAGEKPR-SSTSEIVIKWL-DSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWL 68
E AS EK + +WL D + ++ K + + S I +
Sbjct: 570 EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAK-- 627
Query: 69 VHQANSLVGTKTRHDTCEAVAYGAAVQAAILHGDKSEEVQD 109
+ + + A +K EE +D
Sbjct: 628 -EEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKD 667
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 161 bits (409), Expect = 2e-51
Identities = 41/68 (60%), Positives = 50/68 (73%)
Query: 114 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 173
DV PL+LGIET GGVMT LI RNT IPTK++Q F+T +D+Q V I +YEGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 174 LLGKFKME 181
LG F +
Sbjct: 64 KLGNFDVT 71
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 162 bits (413), Expect = 2e-48
Identities = 55/96 (57%), Positives = 70/96 (72%), Gaps = 4/96 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
E VA GAA+Q ++ G+ V+D++LLDVTPLSLGIET GGV T LI+RNTTIPT ++Q
Sbjct: 338 EVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQ 393
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
FTT +DNQ V I V +GER M DN LG+F++
Sbjct: 394 VFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLT 429
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 162 bits (412), Expect = 2e-47
Identities = 59/96 (61%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQ 145
EAVA GAAVQ +L GD V+D+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q
Sbjct: 369 EAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQ 424
Query: 146 TFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKME 181
F+T DNQ V I V +GER DN LG+F ++
Sbjct: 425 VFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLD 460
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 141 bits (358), Expect = 2e-43
Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 95 QAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQ 154
L + +DVTPLSLGIET GGV T LI RNTTIPTK++Q F+T +D Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 155 PGVLIQVYEGERAMTKDNNLLGKFKME 181
V I+V +GER M DN LLG+F +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLI 91
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 134 bits (340), Expect = 3e-41
Identities = 43/86 (50%), Positives = 55/86 (63%)
Query: 96 AAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQP 155
++ H + ++DVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 156 GVLIQVYEGERAMTKDNNLLGKFKME 181
V I V +GER DN LG+F ++
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLD 88
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 132 bits (335), Expect = 2e-39
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 110 LLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT 169
+LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T DNQ V I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 170 KDNNLLGKFKME 181
DN LG+F ++
Sbjct: 61 ADNKSLGQFNLD 72
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 123 bits (312), Expect = 8e-37
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 114 DVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNN 173
DVTPLSLGIET GG+MT LI RNTTIPTK++Q F+T +D Q V I+V++GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 174 LLGKFKME 181
LLG+F +
Sbjct: 64 LLGQFSLV 71
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 124 bits (315), Expect = 3e-36
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 113 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 172
+DV PLSLG+ET GG++ +I RNTTIP + Q FTT+ D Q + I V +GER + +D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 173 NLLGKF 178
L +F
Sbjct: 61 RSLARF 66
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 43.4 bits (102), Expect = 3e-06
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 30 VIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66
VI WLD+N + FE K+K + PII+ LYQ
Sbjct: 49 VISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQG 85
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 45.6 bits (109), Expect = 3e-06
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 86 EAVAYGAAVQAAILHGD 102
EAVAYGAAVQAAIL GD
Sbjct: 388 EAVAYGAAVQAAILIGD 404
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 43.4 bits (102), Expect = 3e-06
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 28 EIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66
+ ++KWLDSN + FE +QK + PII+KLYQ+
Sbjct: 56 DEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 94
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 42.3 bits (99), Expect = 8e-06
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 28 EIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66
+I WLD N + FE +QK + PIITKLYQ+
Sbjct: 42 NEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQS 80
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 40.6 bits (96), Expect = 1e-04
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 86 EAVAYGAAVQAAIL 99
EAVAYGAAVQA +L
Sbjct: 380 EAVAYGAAVQAGVL 393
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.092
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 23/51 (45%)
Query: 47 DKQ--KAVGSHLYPIITKLYQAWLVHQANSLVGTKTRHDTCEAVAYGAAVQ 95
+KQ K + + L KLY D+ A+A A ++
Sbjct: 18 EKQALKKLQASL-----KLYAD----------------DSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 0.63
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 13/32 (40%)
Query: 11 ERQDLASAGEKPRSSTSEIVIKWL---DSNPA 39
E+Q L +K ++S +K L DS PA
Sbjct: 18 EKQAL----KKLQAS-----LK-LYADDSAPA 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.20
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 123 ETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFKMEK 182
+T G + ++ N P T F + + E AM + + GK K EK
Sbjct: 1655 DTYGFSILDIVINN---PVNLTIHFGGEKGKR------IRENYSAMIFETIVDGKLKTEK 1705
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha
structural genomics, joint center for structural
genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
atcc 824}
Length = 354
Score = 29.4 bits (66), Expect = 0.68
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLLL---LDVTPLSLGIETAGGVMTALIKRNTTIPTK 142
V + + +H + E ++ +L L ++ + A+ + + P +
Sbjct: 269 IQVGVATYIMSK-VHKHREERIKKILSDTGFFNYVKGLNMKKS-DFKRAISEAHLIKPAR 326
Query: 143 QT 144
T
Sbjct: 327 YT 328
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 29.1 bits (66), Expect = 0.83
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 86 EAVAYGAAVQAAIL 99
EAVA GAAVQ +L
Sbjct: 369 EAVAIGAAVQGGVL 382
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 28.9 bits (65), Expect = 0.91
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 80 TRHDTCEAVAYGAAVQAAILHGDKSEE 106
TR T E VA GAA QAA + ++E
Sbjct: 453 TRPATDEYVAIGAARQAAWVLSGETEP 479
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure
initiative, TB structural genomics consortium, TBSGC,
lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5
PDB: 1u5v_A* 1z6k_A
Length = 273
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 103 KSEEVQDLLLLDVTPLSLGIETAGGVMTA 131
K+E ++ L + +ETA G + A
Sbjct: 92 KAESAAQVIELAPRDVIALVETARGAVCA 120
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 27.1 bits (61), Expect = 2.7
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 74 SLVGTKTRHDTCEAVAY--GAAVQAAILHGDKS 104
S+V + R E + A + L G+
Sbjct: 33 SIVFVRKRERVHELANWLREAGINNCYLEGEMV 65
>4eis_A Polysaccharide monooxygenase-3; GH61, PMO, cellulase, biofuels,
CBM33, copper monooxygenase, peroxide, superoxide,
CBP21, beta-sandwich fold; HET: HIC DAH NAG; 1.37A
{Neurospora crassa} PDB: 4eis_B*
Length = 225
Score = 26.9 bits (59), Expect = 3.4
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 137 TTIPTKQTQTFT-TYSDNQPGVLIQVYEG 164
T P+ +F Y PGV Y+
Sbjct: 184 TKTPSSGLVSFPGAYKSTDPGVTYDAYQA 212
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 26.9 bits (60), Expect = 4.1
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 19 GEKPRSSTSEIVIKWLDSN 37
+ EIVI D N
Sbjct: 84 NGEAVEDPMEIVITVTDQN 102
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 27.1 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 86 EAVAYGAAVQAAILHGDKSEEVQDLL 111
E VAYG VQ L E+ +L
Sbjct: 335 EKVAYGTLVQVV-LEDWPLEDFNNLA 359
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 26.5 bits (59), Expect = 4.5
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 19 GEKPRSSTSEIVIKWLDSN 37
+ EIVI D N
Sbjct: 84 NGEAVEDPMEIVITVTDQN 102
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A
2xss_A 2k31_A*
Length = 878
Score = 27.1 bits (59), Expect = 4.5
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 10 AERQDLASAGEKPRSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQAWLV 69
+RQ +K + + V WLD + F K ++ AW
Sbjct: 13 QQRQQQQPQQQKQQQRDQDSVEAWLDDHWDFTFSYFVRKATR----------EMVNAWFA 62
Query: 70 HQANSLVGTKT 80
+ +++ K
Sbjct: 63 ERVHTIPVCKE 73
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} SCOP:
b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Length = 228
Score = 26.4 bits (59), Expect = 4.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 105 EEVQDLLLLDVTPLSLG--I---ETAGGVMTALI 133
EEV L TP+SLG I ETA + AL
Sbjct: 189 EEVALLEARGFTPVSLGRRILRAETAALALLALC 222
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 26.8 bits (59), Expect = 5.0
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 19 GEKPRSSTSEIVIKWLDSN 37
P EI I +D N
Sbjct: 239 NGSPVEEPMEITINVIDQN 257
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function;
2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Length = 268
Score = 26.1 bits (58), Expect = 7.9
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 105 EEVQDLLLLDVTPLSLG--I---ETAGGVMTALI 133
EV+ L D LG I ETA + I
Sbjct: 214 AEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 247
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification,
PUA domain, M3U, SAM, structural genomics, NPPSFA; HET:
SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Length = 229
Score = 25.6 bits (57), Expect = 8.5
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 105 EEVQDLLLLDVTPLSLG--I---ETAGGVMTALI 133
E Q L + L ETA + +++
Sbjct: 193 RESQILREKGFKSVLLEPYTLRTETAVVSIVSIL 226
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown
function, PSI-2, protein structure initiative; HET: MSE
ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Length = 257
Score = 25.7 bits (57), Expect = 8.9
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 105 EEVQDLLLLDVTPLSLG--I---ETAGGVMTALI 133
EV+ LL P+SLG ETAG V I
Sbjct: 206 SEVESALLAGFAPVSLGESRLRTETAGLVACQWI 239
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 26.0 bits (57), Expect = 9.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 123 ETAGGVMTALIKRNTTIPTKQTQT--FTTYSDNQPGVLIQVYEGER 166
TAG + T I + D++ + V+EGE
Sbjct: 19 PTAGAHAPVVFTLRTGIAEGRMVYIGVGGDIDHKINPTLVVHEGET 64
>2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal binding;
1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A
Length = 347
Score = 25.9 bits (57), Expect = 9.3
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 81 RHDTCE--AVAYGAAVQAAILHGDKSEEVQDLLL 112
A+ AV A+ SE LL
Sbjct: 167 ASSLGYNGAILQALAVHLALQGESSSEHFLKQLL 200
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 25.6 bits (57), Expect = 9.7
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 28 EIVIKWLDSNPAGREGRFEDKQKAV 52
+I + P R + E+
Sbjct: 216 KIRDHQASNIPLNRFAQPEEMTGQA 240
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 25.3 bits (56), Expect = 9.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 17 SAGEKPRSSTSEIVIKWLDSN 37
+P SE +IK D N
Sbjct: 80 RRTGRPVEPESEFIIKIHDIN 100
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 25.7 bits (57), Expect = 9.9
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 19 GEKPRSSTSEIVIKWLDSN 37
P EI I +D N
Sbjct: 90 NGSPVEEPMEITINVIDQN 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,595,851
Number of extensions: 142234
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 48
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.0 bits)