RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5548
         (183 letters)



>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 159

 Score =  120 bits (301), Expect = 1e-35
 Identities = 73/78 (93%), Positives = 75/78 (96%)

Query: 104 SEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 163
           SE VQDLLLLDVTPLSLGIETAGGVMT LIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE
Sbjct: 1   SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60

Query: 164 GERAMTKDNNLLGKFKME 181
           GERAMTKDNNLLGKF++ 
Sbjct: 61  GERAMTKDNNLLGKFELT 78


>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
          Length = 118

 Score =  110 bits (276), Expect = 2e-32
 Identities = 45/70 (64%), Positives = 51/70 (72%)

Query: 111 LLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTK 170
           LLLDVTPLSLGIET GGVMT LI +NTTIPTK +Q F+T  DNQ  V I V +GER    
Sbjct: 2   LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61

Query: 171 DNNLLGKFKM 180
           DN  LG+F +
Sbjct: 62  DNKSLGQFNL 71


>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
           {Escherichia coli [TaxId: 562]}
          Length = 115

 Score =  106 bits (266), Expect = 7e-31
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 113 LDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN 172
           +DV PLSLG+ET GG++  +I RNTTIP  + Q FTT+ D Q  + I V +GER + +D 
Sbjct: 1   MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60

Query: 173 NLLGKFKME 181
             L +F + 
Sbjct: 61  RSLARFALR 69


>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 84

 Score = 40.9 bits (96), Expect = 4e-06
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 28 EIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKLYQA 66
            +I WLD N    +  FE +QK +     PIITKLYQ+
Sbjct: 39 NEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQS 77


>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
           fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 193

 Score = 33.0 bits (75), Expect = 0.011
 Identities = 14/14 (100%), Positives = 14/14 (100%)

Query: 86  EAVAYGAAVQAAIL 99
           EAVAYGAAVQAAIL
Sbjct: 179 EAVAYGAAVQAAIL 192


>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
           fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 33.0 bits (75), Expect = 0.012
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 86  EAVAYGAAVQAAIL 99
           EAVA GAAVQ  +L
Sbjct: 184 EAVAIGAAVQGGVL 197


>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
           amyloliquefaciens [TaxId: 1390]}
          Length = 353

 Score = 27.3 bits (60), Expect = 0.97
 Identities = 14/54 (25%), Positives = 19/54 (35%)

Query: 98  ILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMTALIKRNTTIPTKQTQTFTTYS 151
           I  G +++   D   +DV    LG E   G+  A    N     K  Q F    
Sbjct: 273 ITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNGENIDHGQKANQNFKMVP 326


>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae,
           tu901 [TaxId: 1932]}
          Length = 87

 Score = 24.6 bits (53), Expect = 3.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 122 IETAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQV 161
           +E+   V+T   +RN + P  +T T   +    PG + ++
Sbjct: 42  VESGNNVVTLQFQRNLSDPRLETITLQKWGSWNPGHIHEI 81


>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
           casseliflavus [TaxId: 37734]}
          Length = 235

 Score = 25.2 bits (54), Expect = 5.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 67  WLVHQANSLVGTKTRHDTCEAVAYGAAVQAAILHG 101
            +  QA+ L     R    E  A GAA  A +  G
Sbjct: 163 LMQFQADILDIDVQRAANLETTALGAAYLAGLAVG 197


>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 167

 Score = 24.8 bits (53), Expect = 6.6
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 23  RSSTSEIVIKWLDSNPAGREGRFEDKQKAVGSHLYPIITKL 63
           R +   +    L S+P+      +    AV  HL     +L
Sbjct: 121 RIAYRRLRNDRLVSDPSVAVNVADADVAAVVGHLLAAARRL 161


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,064
Number of extensions: 23867
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 14
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)