BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5549
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 10/154 (6%)
Query: 51 SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110
S++F++ + N V+ ++ Y ++T TN ++ NL AD L ++P + WP
Sbjct: 30 SVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPF 89
Query: 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGTWFIA 169
GDVLCKI+ + F ++TLT++S+DRY + P TP + ++ + W ++
Sbjct: 90 GDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLS 149
Query: 170 CVVFVPVVLW----FREQ-EVLESRLICTIVFPN 198
V + ++ RE +V+E C++ FP+
Sbjct: 150 SSVGISAIVLGGTKVREDVDVIE----CSLQFPD 179
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 28/286 (9%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A + +
Sbjct: 11 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT 70
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 71 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 130
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPNVPTVSVSTAFTVVMXXXXXXXX 220
++ + F+P+ + W+R QE + + C F N A+ +
Sbjct: 131 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN-------QAYAIASSIVSFYVP 183
Query: 221 XXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMI 280
+F++ +K + L H A T + M ++C WLP F+ I
Sbjct: 184 LVIMVFVYSRVFQEAKRQLQKIDKFCLKEHKALKTLGIIMGTFTLC-----WLPFFIVNI 238
Query: 281 LIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHF 326
+ I +R ++ + N+ NP + R F
Sbjct: 239 VHVIQDN--------LIRKEVYILLNWIGYVNSGFNPLIYCRSPDF 276
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A +
Sbjct: 47 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM 106
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C +WTL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 166
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 167 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN 204
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
L S + + + N+ V+ ++ Y L+T TN ++ NL AD L ++P + W
Sbjct: 20 LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQSAKYLMETW 79
Query: 109 PLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGTWF 167
P G++LCK + + F ++TLT++S+DRY + P TP + L+ + W
Sbjct: 80 PFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWV 139
Query: 168 IACVVFVPVVLWFREQEVLESRLICTIVFPN 198
+A V VP+++ Q + ++C + FP+
Sbjct: 140 LASGVGVPIMVMAVTQP-RDGAVVCMLQFPS 169
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 19 DDKDGWGPR----YFFTFYTE-FGNREFEMSAEIC---------------LLSIIFILSM 58
DD D P Y YTE G+ +++ E C + SIIF+ +
Sbjct: 4 DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 59 GANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM 118
N V++ + + L+++T+ + L+L+ AD+LF +++P V+ W G+ LCK +
Sbjct: 64 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKAV 122
Query: 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVL---LLTLGTWFIACVVFVP 175
V + +W L IS+DRY IV + P ++L ++ +G W A ++ +P
Sbjct: 123 HVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR--PRKLLAEKVVYVGVWIPALLLTIP 180
Query: 176 VVLWFREQEVLESRLICTIVFPN 198
++ E + R IC +PN
Sbjct: 181 DFIFANVSEA-DDRYICDRFYPN 202
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 19 DDKDGWGPR----YFFTFYTE-FGNREFEMSAEIC---------------LLSIIFILSM 58
DD D P Y YTE G+ +++ E C + SIIF+ +
Sbjct: 4 DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 59 GANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM 118
N V++ + + L+++T+ + L+L+ AD+LF +++P V+ W G+ LCK +
Sbjct: 64 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKAV 122
Query: 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVL---LLTLGTWFIACVVFVP 175
V + +W L IS+DRY IV + P ++L ++ +G W A ++ +P
Sbjct: 123 HVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR--PRKLLAEKVVYVGVWIPALLLTIP 180
Query: 176 VVLWFREQEVLESRLICTIVFPN 198
++ E + R IC +PN
Sbjct: 181 DFIFANVSEA-DDRYICDRFYPN 202
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 19 DDKDGWGPR----YFFTFYTE-FGNREFEMSAEIC---------------LLSIIFILSM 58
DD D P Y YTE G+ +++ E C + SIIF+ +
Sbjct: 4 DDDDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGI 63
Query: 59 GANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM 118
N V++ + + L+++T+ + L+L+ AD+LF +++P V+ W G+ LCK +
Sbjct: 64 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKAV 122
Query: 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVL---LLTLGTWFIACVVFVP 175
V + +W L IS+DRY IV + P ++L ++ +G W A ++ +P
Sbjct: 123 HVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR--PRKLLAEKVVYVGVWIPALLLTIP 180
Query: 176 VVLWFREQEVLESRLICTIVFPN 198
++ E + R IC +PN
Sbjct: 181 DFIFANVSEA-DDRYICDRFYPN 202
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A + +
Sbjct: 188 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT 247
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 248 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 307
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 308 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN 345
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 2/151 (1%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
+ L SI+ ++ + N V+ ++ Y ++T TN ++ NL AD L ++P +
Sbjct: 21 MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMG 80
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGT 165
WP G++LCKI+ + F ++TL +S+DRY + P TP ++ +
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN 140
Query: 166 WFIACVVFVPVVLWFREQEVLESRLICTIVF 196
W ++ + +P V++ + + + CT+ F
Sbjct: 141 WILSSAIGLP-VMFMATTKYRQGSIDCTLTF 170
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAAD-ILFCLSIPGIMYARVSPQ 107
L + ++++ N+ V++ L+TV NYFLL+L AD I+ +S+ + +
Sbjct: 18 LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR 77
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W LG++ C + +V + L +IS DRYF I P YR+K T R ++ W
Sbjct: 78 WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 167 FIACVVFVPVVLWFREQEVLESRLI----CTIVFPNVPTVSVSTA 207
I+ V++ P +L++ Q + R + C I F + PT++ TA
Sbjct: 138 VISFVLWAPAILFW--QYFVGKRTVPPGECFIQFLSEPTITFGTA 180
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 130/299 (43%), Gaps = 18/299 (6%)
Query: 34 TEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF- 92
E ++++E + L++++ +L + N+ V+ + LQT+TN F+ +L AD++
Sbjct: 3 AELLSQQWEAGMSL-LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVG 61
Query: 93 CLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRS 151
L +P V W G LC++ +C + TL +I++DRY I P Y+S
Sbjct: 62 LLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
Query: 152 KLTPHRVLLLTLGTWFIACVV-FVPVVL-WFREQEVLESRLICTIVFPNVPTVSVSTAFT 209
+T R ++ W I+ +V F+P+++ W+R+++ L C P + A+
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDED--PQALKC-YQDPGCCDFVTNRAYA 178
Query: 210 VVMXXXXXXXXXXXXXXXXXXIFRKLVETKKKWEHSHLSSH--HARHTRVMRMLCISVCV 267
+ ++R+ E +K + + R + ++ L I + V
Sbjct: 179 IASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGV 238
Query: 268 ILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHF 326
WLP FL I + + R D F F W L AN+ +NP + R F
Sbjct: 239 FTLCWLPFFLVNI-VNVFNRDLVPDWLFV----AFNW---LGYANSAMNPIIYCRSPDF 289
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A +
Sbjct: 47 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM 106
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 166
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 167 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN 204
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A +
Sbjct: 46 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM 105
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 165
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 166 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN 203
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 130/301 (43%), Gaps = 20/301 (6%)
Query: 34 TEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF- 92
E ++++E + L++++ +L + N+ V+ + LQT+TN F+ +L AD++
Sbjct: 3 AELLSQQWEAGMSL-LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVG 61
Query: 93 CLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRS 151
L +P V W G LC++ +C + TL +I++DRY I P Y+S
Sbjct: 62 LLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
Query: 152 KLTPHRVLLLTLGTWFIACVV-FVPVVL-WFREQEVLESRLICTIVFPNVPTVSVSTAFT 209
+T R ++ W I+ +V F+P+++ W+R+++ L C P + A+
Sbjct: 122 LMTRARAKVIICTVWAISALVSFLPIMMHWWRDED--PQALKC-YQDPGCCDFVTNRAYA 178
Query: 210 VVMXXXXXXXXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHA----RHTRVMRMLCISV 265
+ ++R+ E +K + + R + ++ L I +
Sbjct: 179 IASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIM 238
Query: 266 CVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHH 325
V WLP FL I + + R D F F W L AN+ +NP + R
Sbjct: 239 GVFTLCWLPFFLVNI-VNVFNRDLVPDWLFV----AFNW---LGYANSAMNPIIYCRSPD 290
Query: 326 F 326
F
Sbjct: 291 F 291
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 32/302 (10%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A +
Sbjct: 40 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM 99
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 100 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 159
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPNVPTVSVSTAFTVVMXXXXXXXX 220
++ + F+P+ + W+R QE + + C F N S+ + +
Sbjct: 160 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFV 219
Query: 221 XXXXXXXXXXIFRKLVETKKKWEHSHLS--------SHHARHT--------RVMRMLCIS 264
+K+ +++ ++ +LS H R + + ++ L I
Sbjct: 220 YSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGII 279
Query: 265 VCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRH 324
+ WLP F+ I+ I + +R ++ + N+ NP + R
Sbjct: 280 MGTFTLCWLPFFIVNIVHVIQ--------DNLIRKEVYILLNWIGYVNSGFNPLIYCRSP 331
Query: 325 HF 326
F
Sbjct: 332 DF 333
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A +
Sbjct: 39 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM 98
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 99 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 158
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 159 IVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTN 196
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARV-SPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L++ A +
Sbjct: 16 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM 75
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 76 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 135
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 136 IVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTN 173
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSPQ 107
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ L+ +P +
Sbjct: 15 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKM 74
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTW 166
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L W
Sbjct: 75 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 134
Query: 167 FIACVV-FVPVVL-WFR--EQEVLE--SRLICTIVFPN 198
++ + F+P+ + W+R QE + + C F N
Sbjct: 135 IVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTN 172
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAAD-ILFCLSIP 97
+ FE+ + + + ++++ N+ V++++ LQTV NYFL +L AD I+ S+
Sbjct: 19 KTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMN 78
Query: 98 GIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPH 156
V WPLG V+C + +V + L +IS DRYFC+ P Y K T
Sbjct: 79 LYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTK 138
Query: 157 RVLLLTLGTWFIACVVFVPVVLWFR 181
++ W ++ +++ P +L+++
Sbjct: 139 MAGMMIAAAWVLSFILWAPAILFWQ 163
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 60 ANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMP 119
N V+ ++ + ++T TN ++ NL AD L L++P + WP G+ LCK +
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVI 201
Query: 120 YSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGTWFIACVVFVPVVL 178
+ F +TLT +S+DRY I P + T + + + W +A VV VPV +
Sbjct: 202 AIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAI 261
Query: 179 WFREQEVLESRLICTIVFP 197
Q V + + C + P
Sbjct: 262 MGSAQ-VEDEEIECLVEIP 279
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 6/166 (3%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAAD-ILFCLSIP-GIMYARV 104
+ +LS I ++++G NL VL V L TV N ++++L+ AD I+ + +P I+Y +
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
Query: 105 SPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTL 163
S +W LG LC +V ++++ ++ +DRY + P Y T R L
Sbjct: 72 S-KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATIL 130
Query: 164 GTWFIACVVFVPVVLW--FREQEVLESRLICTIVFPNVPTVSVSTA 207
G WF++ + +P++ W F +Q + C F +V V TA
Sbjct: 131 GAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTA 176
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFC-LSIPGIMYARVSPQ 107
+L+I+F N V + V+ ALQT TNY +++L AD+L L +P ++Y V+
Sbjct: 49 ILAIVF-----GNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG 103
Query: 108 -WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPH----RVLLLT 162
W + C + + +W L IS+DRY +V+P + T RV L+
Sbjct: 104 VWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMI 163
Query: 163 LGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPN 198
W +A V P++ F +C+I P+
Sbjct: 164 TAVWVLAFAVSCPLLFGF---NTTGDPTVCSISNPD 196
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 74 LQTVTNYFLLNLTAADILFCL--SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLW 131
++TVTNYFL+NL A+ ++ YA V +W G CK + F ++
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYA-VHNEWYYGLFYCKFHNFFPIAAVFASIY 121
Query: 132 TLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLI 191
++T ++ DRY I + P + +L+ ++ W +A ++ P ++ E + SR++
Sbjct: 122 SMTAVAFDRYMAI-IHPLQPRLSATATKVVICVIWVLALLLAFPQG-YYSTTETMPSRVV 179
Query: 192 CTIVFPNVPT 201
C I +P P
Sbjct: 180 CMIEWPEHPN 189
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 73 ALQTVTNYFLLNLTAADILFCL--SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLL 130
+LQT N F++NL +D F L P + + +W G CK+ + + GF+ +
Sbjct: 63 SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSI 122
Query: 131 WTLTLISMDRYFCIVVPPYRSKLTPHR 157
T+ +IS+DRY I P SK HR
Sbjct: 123 MTMAMISIDRYNVIGRPMAASKKMSHR 149
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 73 ALQTVTNYFLLNLTAADILFCL--SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLL 130
+LQT N F++NL +D F L P + + +W G CK+ + + GF+ +
Sbjct: 64 SLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSI 123
Query: 131 WTLTLISMDRYFCIVVPPYRSKLTPHR 157
T+ +IS+DRY I P SK HR
Sbjct: 124 MTMAMISIDRYNVIGRPMAASKKMSHR 150
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 53 IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP-GIMYARVSPQWPLG 111
+F++S+ N+ ++ + ++ ++L+L AD+LF +P I Y W G
Sbjct: 30 VFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFG 89
Query: 112 DVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYR-SKLTPHRVLLLTLGTWFIAC 170
LC+ + + + + + +T+IS+DR+ +V P S T R L W +A
Sbjct: 90 SELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAI 149
Query: 171 VVFVPVVLWFREQEV 185
VP++L +EQ +
Sbjct: 150 AGVVPLLL--KEQTI 162
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 12/283 (4%)
Query: 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPG 98
+F M A L I+ L N L + + L+T NY LLNL AD+
Sbjct: 37 QFSMLAAYMFLLIM--LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 94
Query: 99 IMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158
+Y + + G C + + + G + LW+L +++++RY + P + +
Sbjct: 95 TLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 154
Query: 159 LLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXX 218
++ TW +A P ++ + + C I + + + +F + M
Sbjct: 155 IMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 214
Query: 219 XXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLT 278
+ + E + + S ++ V RM+ I V L WLP
Sbjct: 215 IPLIVIFFCYGQLVFTVKEAAAQQQES--ATTQKAEKEVTRMVIIMVIAFLICWLP--YA 270
Query: 279 MILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLII 321
+ YI + + F+ P A + V NP + I
Sbjct: 271 GVAFYIFTHQGSCFGPIFMT-----IPAFFAKTSAVYNPVIYI 308
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 12/283 (4%)
Query: 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPG 98
+F M A L I+ L N L + + L+T NY LLNL AD+
Sbjct: 37 QFSMLAAYMFLLIM--LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 94
Query: 99 IMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158
+Y + + G C + + + G + LW+L +++++RY + P + +
Sbjct: 95 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 154
Query: 159 LLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXX 218
++ TW +A P ++ + + C I + + + +F + M
Sbjct: 155 IMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 214
Query: 219 XXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLT 278
+ + E + + S ++ V RM+ I V L WLP
Sbjct: 215 IPLIVIFFCYGQLVFTVKEAAAQQQES--ATTQKAEKEVTRMVIIYVIAFLICWLP--YA 270
Query: 279 MILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLII 321
+ YI + + F+ P A + V NP + I
Sbjct: 271 GVAFYIFTHQGSCFGPIFMT-----IPAFFAKTSAVYNPVIYI 308
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPG 98
+F M A L I+ L N L + + L+T NY LLNL AD+
Sbjct: 37 QFSMLAAYMFLLIM--LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 94
Query: 99 IMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158
+Y + + G C + + + G + LW+L +++++RY + P + +
Sbjct: 95 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 154
Query: 159 LLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXX 218
++ TW +A P ++ + + C I + + + +F + M
Sbjct: 155 IMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 214
Query: 219 XXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLP 274
+ + E + + S ++ V RM+ I V L WLP
Sbjct: 215 IPLIVIFFCYGQLVFTVKEAAAQQQES--ATTQKAEKEVTRMVIIMVIAFLICWLP 268
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 5/236 (2%)
Query: 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPG 98
+F M A L I+ L N L + + L+T NY LLNL AD+
Sbjct: 36 QFSMLAAYMFLLIM--LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 93
Query: 99 IMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158
+Y + + G C + + + G + LW+L +++++RY + P + +
Sbjct: 94 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 153
Query: 159 LLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXX 218
++ TW +A P ++ + + C I + + + +F + M
Sbjct: 154 IMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 213
Query: 219 XXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLP 274
+ + E + + S ++ V RM+ I V L WLP
Sbjct: 214 IPLIVIFFCYGQLVFTVKEAAAQQQES--ATTQKAEKEVTRMVIIMVIAFLICWLP 267
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 12/283 (4%)
Query: 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPG 98
+F M A L I+ L N L + + L+T NY LLNL AD+
Sbjct: 37 QFSMLAAYMFLLIM--LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 94
Query: 99 IMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158
+Y + + G C + + + G + LW+L +++++RY + P + +
Sbjct: 95 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 154
Query: 159 LLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXX 218
++ TW +A P ++ + + C I + + + +F + M
Sbjct: 155 IMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 214
Query: 219 XXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLT 278
+ + E + + S ++ V RM+ I V L WLP
Sbjct: 215 IPLIVIFFCYGQLVFTVKEAAAQQQES--ATTQKAEKEVTRMVIIMVIAFLICWLP--YA 270
Query: 279 MILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLII 321
+ YI + + F+ P A + V NP + I
Sbjct: 271 GVAFYIFTHQGSCFGPIFMT-----IPAFFAKTSAVYNPVIYI 308
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 12/283 (4%)
Query: 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPG 98
+F M A L I+ L N L + + L+T NY LLNL AD+
Sbjct: 36 QFSMLAAYMFLLIM--LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 93
Query: 99 IMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158
+Y + + G C + + + G + LW+L +++++RY + P + +
Sbjct: 94 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 153
Query: 159 LLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMXXXXXX 218
++ TW +A P ++ + + C I + + + +F + M
Sbjct: 154 IMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI 213
Query: 219 XXXXXXXXXXXXIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLT 278
+ + E + + S ++ V RM+ I V L WLP
Sbjct: 214 IPLIVIFFCYGQLVFTVKEAAAQQQES--ATTQKAEKEVTRMVIIMVIAFLICWLP--YA 269
Query: 279 MILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLII 321
+ YI + + F+ P A + V NP + I
Sbjct: 270 GVAFYIFTHQGSCFGPIFMT-----IPAFFAKTSAVYNPVIYI 307
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 51 SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110
+++F+LS+ N V++ +++ ++VT+ +LLNL AD+LF L++P I A W
Sbjct: 19 ALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLP-IWAASKVNGWIF 77
Query: 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIAC 170
G LCK++ + V + + L IS+DRY IV H V + LG W ++
Sbjct: 78 GTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSM 137
Query: 171 VVFVPVVLWFREQEVLESRLICTIVFPN 198
+ +P L+ + S +C V N
Sbjct: 138 NLSLPFFLFRQAYHPNNSSPVCYEVLGN 165
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 53 IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSPQWPLG 111
I +L++ N+ V V LQ VTNYF+++L AADIL L+IP + +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAI--------TIS 67
Query: 112 DVLCKIMPYSQFVCGFVL------LWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
C F+ FVL +++L I++DRY I +P Y +T R +
Sbjct: 68 TGFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAI 127
Query: 165 TWFIA-CVVFVPVVLWFREQEVLESR 189
W ++ + P++ W + E +
Sbjct: 128 CWVLSFAIGLTPMLGWNNCGQPKEGK 153
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 10 INTSYVFGI------DDKDGWGPRYFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLF 63
I SY+F + DD DG P + Y ++ E+ I +L++ N+
Sbjct: 5 IALSYIFCLVFADYKDDDDGAPPIMGSSVY---------ITVELA----IAVLAILGNVL 51
Query: 64 VLITVMWYPALQTVTNYFLLNLTAADI-LFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQ 122
V V LQ VTNYF+++L AADI + L+IP + + C
Sbjct: 52 VCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--------TISTGFCAACHGCL 103
Query: 123 FVCGFVL------LWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTWFIA-CVVFV 174
F+ FVL +++L I++DRY I +P Y +T R + W ++ +
Sbjct: 104 FIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163
Query: 175 PVVLWFREQEVLESR 189
P++ W + E +
Sbjct: 164 PMLGWNNCGQPKEGK 178
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 53 IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADI-LFCLSIPGIMYARVSPQWPLG 111
I +L++ N+ V V LQ VTNYF+++L AADI + L+IP + +
Sbjct: 31 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--------TIS 82
Query: 112 DVLCKIMPYSQFVCGFVL------LWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
C F+ FVL +++L I++DRY I +P Y +T R +
Sbjct: 83 TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 142
Query: 165 TWFIA-CVVFVPVVLWFREQEVLESR 189
W ++ + P++ W + E +
Sbjct: 143 CWVLSFAIGLTPMLGWNNCGQPKEGK 168
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 53 IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSPQWPLG 111
I +L++ N+ V V LQ VTNYF+++ AADIL L+IP + +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAI--------AIS 67
Query: 112 DVLCKIMPYSQFVCGFVL------LWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
C F+ FVL +++L I++DRY I +P Y +T R +
Sbjct: 68 TGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 127
Query: 165 TWFIA-CVVFVPVVLWFREQEVLESR 189
W ++ + P++ W + E +
Sbjct: 128 CWVLSFAIGLTPMLGWNNCGQPKEGK 153
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 53 IFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADI-LFCLSIPGIMYARVSPQWPLG 111
I +L++ N+ V V LQ VTNYF+++L AADI + L+IP + +
Sbjct: 16 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--------TIS 67
Query: 112 DVLCKIMPYSQFVCGFVL------LWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
C F+ FVL +++L I++DRY I +P Y +T R +
Sbjct: 68 TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 127
Query: 165 TWFIA-CVVFVPVVLWFREQEVLESR 189
W ++ + P++ W + E +
Sbjct: 128 CWVLSFAIGLTPMLGWNNCGQPKEGK 153
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 33 YTEFGNREFEMSAEICLLSIIFILS----MGANLFVLITVMWYPALQTVTNYFLLNLTAA 88
YT N + I L S++FIL + N+FVL+T+ YF+ NL +
Sbjct: 49 YTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALS 108
Query: 89 DILFCLS------IPGIMYARVSP-QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRY 141
D+L ++ + G +++P QW L + S FV +++L I+++RY
Sbjct: 109 DLLAGVAYTANLLLSGATTYKLTPAQWFLRE-------GSMFVALSASVFSLLAIAIERY 161
Query: 142 FCIVVPPYRSKLTPHRVLLLTLGTWFIACVV-FVPVVLWFREQEVLESRLICTIVFP 197
++ + R+ LL W I+ ++ +P++ W + + C+ V P
Sbjct: 162 ITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGW----NCISALSSCSTVLP 214
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 233 RKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTAD 292
++++ T + +S + + +++ + I + V +A W P+F+ ++L+ + + T D
Sbjct: 395 KRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFI-LLLLDVGCKVKTCD 453
Query: 293 TEFFLRSHHFLWPLLLALANTVVNP 317
F R+ +F L+LA+ N+ NP
Sbjct: 454 ILF--RAEYF---LVLAVLNSGTNP 473
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 108 WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGT 165
W GD C+ + + C + + +S+ RY I P+++K ++ R
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAI-CHPFKAKTLMSRSRTKKFISAI 161
Query: 166 WFIACVVFVPVV----LWFREQEVLE-SRLICTIVFPNVPTVSVSTAFTV 210
W + ++ +P++ L R + L+CT P V T +V V
Sbjct: 162 WLASALLAIPMLFTMGLQNRSADGTHPGGLVCT---PIVDTATVKVVIQV 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.333 0.144 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,058,924
Number of Sequences: 62578
Number of extensions: 312163
Number of successful extensions: 1051
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 51
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 52 (24.6 bits)