Query psy5549
Match_columns 331
No_of_seqs 214 out of 1700
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 20:22:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 4.8E-48 1E-52 316.1 18.5 292 35-331 27-329 (423)
2 PHA03234 DNA packaging protein 100.0 2.5E-45 5.4E-50 312.3 19.0 283 33-331 22-310 (338)
3 PHA03235 DNA packaging protein 100.0 8.3E-42 1.8E-46 296.8 19.3 286 33-331 22-317 (409)
4 PHA02834 chemokine receptor-li 100.0 6.2E-41 1.3E-45 285.6 19.4 276 40-331 25-303 (323)
5 PHA02638 CC chemokine receptor 100.0 4.4E-40 9.5E-45 287.4 20.7 278 39-331 94-391 (417)
6 PHA03087 G protein-coupled che 100.0 4.6E-39 1E-43 276.8 26.5 283 34-330 31-316 (335)
7 KOG4220|consensus 100.0 3.5E-40 7.5E-45 269.5 12.1 279 38-331 25-481 (503)
8 PF00001 7tm_1: 7 transmembran 100.0 3.1E-35 6.6E-40 243.9 19.1 250 60-320 1-257 (257)
9 KOG2087|consensus 99.9 6E-26 1.3E-30 184.7 5.0 263 46-330 27-299 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 1.6E-24 3.4E-29 178.1 10.6 249 55-331 2-253 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.9 2.4E-21 5.2E-26 165.5 16.1 274 52-330 5-310 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.8 8.3E-20 1.8E-24 152.3 17.4 261 52-330 2-268 (274)
13 PF05296 TAS2R: Mammalian tast 99.7 3.5E-16 7.7E-21 131.3 18.1 276 42-331 5-295 (303)
14 PF05462 Dicty_CAR: Slime mold 99.7 1.7E-15 3.7E-20 125.6 17.0 254 44-329 7-262 (303)
15 PF10323 7TM_GPCR_Srv: Serpent 99.7 1.1E-16 2.3E-21 133.4 8.8 259 56-331 7-277 (283)
16 PF10321 7TM_GPCR_Srt: Serpent 99.5 1.5E-12 3.2E-17 108.9 17.0 266 40-331 29-301 (313)
17 PF03402 V1R: Vomeronasal orga 99.5 3.1E-13 6.8E-18 109.2 10.4 240 74-330 7-262 (265)
18 PF10317 7TM_GPCR_Srd: Serpent 99.3 1.5E-10 3.3E-15 97.4 18.4 266 49-331 4-290 (292)
19 PF11710 Git3: G protein-coupl 99.2 2.6E-10 5.7E-15 89.5 12.9 160 72-241 30-200 (201)
20 PF10327 7TM_GPCR_Sri: Serpent 99.0 6.3E-08 1.4E-12 81.7 19.7 271 45-330 10-302 (303)
21 PF02118 Srg: Srg family chemo 99.0 1.1E-08 2.4E-13 85.7 15.2 258 51-331 5-275 (275)
22 PF02101 Ocular_alb: Ocular al 99.0 1.6E-07 3.5E-12 78.3 19.3 257 44-320 27-310 (405)
23 PF10292 7TM_GPCR_Srab: Serpen 98.9 2.3E-07 5E-12 79.3 19.9 272 44-330 17-299 (324)
24 PF04789 DUF621: Protein of un 98.9 2.3E-07 4.9E-12 73.8 16.3 270 40-329 9-290 (305)
25 PF10326 7TM_GPCR_Str: Serpent 98.8 1.2E-09 2.5E-14 93.1 1.5 266 51-331 6-306 (307)
26 PF10319 7TM_GPCR_Srj: Serpent 98.8 7.5E-06 1.6E-10 67.5 22.3 263 51-331 12-310 (310)
27 PF00002 7tm_2: 7 transmembran 98.5 3.2E-08 6.9E-13 81.3 1.8 202 51-275 8-214 (242)
28 PF10316 7TM_GPCR_Srbc: Serpen 98.4 1.1E-05 2.3E-10 66.5 13.7 112 44-156 6-121 (273)
29 PF10318 7TM_GPCR_Srh: Serpent 98.3 5.5E-05 1.2E-09 64.3 17.1 272 45-330 5-295 (302)
30 KOG4193|consensus 98.2 3.4E-05 7.3E-10 70.5 12.6 224 72-330 348-574 (610)
31 PF02076 STE3: Pheromone A rec 98.1 0.0005 1.1E-08 57.2 16.3 196 75-283 23-222 (283)
32 PF02117 7TM_GPCR_Sra: Serpent 97.9 0.00035 7.6E-09 59.7 13.6 241 39-290 16-267 (328)
33 PF10322 7TM_GPCR_Sru: Serpent 97.8 0.0015 3.3E-08 54.9 15.7 199 114-330 102-305 (307)
34 PF03125 Sre: C. elegans Sre G 97.7 0.0033 7.1E-08 54.9 16.5 114 41-155 24-162 (365)
35 KOG4564|consensus 97.7 0.00064 1.4E-08 59.8 11.5 233 66-330 167-412 (473)
36 PF11970 Git3_C: G protein-cou 97.6 0.00043 9.2E-09 44.8 6.7 72 250-328 3-75 (76)
37 PF01534 Frizzled: Frizzled/Sm 97.5 0.021 4.5E-07 48.7 18.2 153 45-199 10-176 (328)
38 PF06681 DUF1182: Protein of u 96.9 0.0041 8.8E-08 47.8 6.5 143 46-199 43-194 (226)
39 PF03383 Serpentine_r_xa: Caen 95.8 0.028 6.1E-07 41.7 5.5 103 79-182 4-112 (153)
40 PF02175 7TM_GPCR_Srb: Serpent 94.5 2 4.3E-05 34.4 12.5 51 107-158 77-127 (236)
41 PF05296 TAS2R: Mammalian tast 91.9 5.1 0.00011 34.1 12.3 60 211-270 187-248 (303)
42 KOG4289|consensus 73.5 5.1 0.00011 40.8 4.3 176 111-330 2222-2397(2531)
43 PF06454 DUF1084: Protein of u 70.1 66 0.0014 27.1 20.8 51 41-94 26-77 (281)
44 PF13853 7tm_4: Olfactory rece 59.5 0.055 1.2E-06 40.3 -9.3 105 160-277 5-116 (144)
45 PF06814 Lung_7-TM_R: Lung sev 56.7 1.2E+02 0.0026 25.6 16.7 25 216-240 189-214 (295)
46 PF10325 7TM_GPCR_Srz: Serpent 53.5 1.3E+02 0.0028 24.9 13.2 132 120-267 87-221 (267)
47 PF15086 UPF0542: Uncharacteri 53.2 54 0.0012 20.9 4.7 32 209-240 21-53 (74)
48 PF05915 DUF872: Eukaryotic pr 48.9 43 0.00093 23.8 4.4 30 38-67 38-67 (115)
49 PF00003 7tm_3: 7 transmembran 48.4 38 0.00083 27.4 4.8 25 110-134 51-75 (238)
50 PF15050 SCIMP: SCIMP protein 46.1 73 0.0016 22.6 4.9 30 211-240 11-40 (133)
51 KOG1056|consensus 40.6 3.9E+02 0.0084 26.7 11.7 43 44-86 559-608 (878)
52 PF06024 DUF912: Nucleopolyhed 39.1 1E+02 0.0022 21.3 4.9 13 62-74 80-92 (101)
53 PF04505 Dispanin: Interferon- 38.0 87 0.0019 20.6 4.3 23 212-234 24-46 (82)
54 PF09889 DUF2116: Uncharacteri 32.8 64 0.0014 19.8 2.7 21 252-272 33-53 (59)
55 PF05478 Prominin: Prominin; 29.3 3.2E+02 0.007 27.2 8.4 77 207-285 411-487 (806)
56 PF11044 TMEMspv1-c74-12: Plec 28.3 1.2E+02 0.0026 17.1 4.2 14 227-240 21-34 (49)
57 PF12725 DUF3810: Protein of u 25.6 2.9E+02 0.0063 23.8 6.6 21 254-274 57-77 (318)
58 KOG2575|consensus 24.5 1.6E+02 0.0035 26.2 4.7 27 253-279 253-279 (510)
59 TIGR02976 phageshock_pspB phag 24.1 2.1E+02 0.0046 18.5 4.3 21 216-236 5-25 (75)
60 KOG3577|consensus 23.6 1.8E+02 0.0039 27.4 5.3 90 110-201 305-394 (556)
61 COG1862 YajC Preprotein transl 23.4 91 0.002 21.4 2.5 25 217-241 12-36 (97)
62 TIGR02230 ATPase_gene1 F0F1-AT 22.0 2.8E+02 0.0061 19.2 4.7 58 254-317 35-92 (100)
63 PF01299 Lamp: Lysosome-associ 21.2 2.1E+02 0.0047 24.4 5.0 37 33-74 264-300 (306)
64 PF02532 PsbI: Photosystem II 21.0 1.5E+02 0.0033 15.9 2.9 18 44-61 9-26 (36)
65 KOG3500|consensus 20.9 1.8E+02 0.0038 19.1 3.2 31 252-284 28-58 (84)
66 PRK04989 psbM photosystem II r 20.3 1.6E+02 0.0035 15.8 2.9 24 208-231 6-29 (35)
No 1
>KOG4219|consensus
Probab=100.00 E-value=4.8e-48 Score=316.11 Aligned_cols=292 Identities=24% Similarity=0.400 Sum_probs=252.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhh
Q psy5549 35 EFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDV 113 (331)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~ 113 (331)
....+.+.+.+.++++.++.++++.||+++++++..+|++|+.+|++++|||+||+..++ ..++......+.+|.+|..
T Consensus 27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f 106 (423)
T KOG4219|consen 27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF 106 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence 456788899999999999999999999999999999999999999999999999999999 9999988888899999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeec----cce
Q psy5549 114 LCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVL----ESR 189 (331)
Q Consensus 114 ~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~----~~~ 189 (331)
.|++..++......+|++++++||+|||.||. +|++.|.++|.++.+++++|+.+++++.|..+........ .+.
T Consensus 107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi-~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~ 185 (423)
T KOG4219|consen 107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAII-HPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESR 185 (423)
T ss_pred eeeeccccchhhhhHhHHHHHHHHHHHHHHHh-hhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcce
Confidence 99999999999999999999999999999999 9999999999999999999999999999999887776522 335
Q ss_pred eEEeeeCCCC--Ccccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccc-cccchhhhhhhHHHHHHH
Q psy5549 190 LICTIVFPNV--PTVSVS---TAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHS-HLSSHHARHTRVMRMLCI 263 (331)
Q Consensus 190 ~~C~~~~~~~--~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 263 (331)
..|...+++. +..... +.|...+.++.+++|++++...|..|.+++++.+....++ .+.++.+.++|+.||+++
T Consensus 186 ~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmlii 265 (423)
T KOG4219|consen 186 VVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLII 265 (423)
T ss_pred EEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHH
Confidence 6676666554 221112 2267788888999999999999999999999988644322 244566889999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 264 SVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 264 ~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
+++.|.+||+|+++..++.....+........ ..+....+++..|++.||+||++.|++||..|
T Consensus 266 VV~~FaicWlPyh~y~il~~~~~~i~~~k~i~----~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf 329 (423)
T KOG4219|consen 266 VVVIFAICWLPYHIYFILNATNPEINRKKFIQ----QVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGF 329 (423)
T ss_pred HHHHHHHhccChhHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHhhhccHhhhhhHHHHHHHH
Confidence 99999999999999999988665544443322 48889999999999999999999999998754
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=2.5e-45 Score=312.31 Aligned_cols=283 Identities=13% Similarity=0.181 Sum_probs=214.5
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHhhhcceeeeeee--ecCCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCc
Q psy5549 33 YTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVM--WYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110 (331)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~--~~~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~ 110 (331)
|+..+..+..+.+...+|.+++++|++||+++++++. +++++|+++|++++|||++|++.++..|+..... ..+|++
T Consensus 22 c~~~~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~-~~~w~f 100 (338)
T PHA03234 22 CISTPTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR-EALFNF 100 (338)
T ss_pred CcCchHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCccC
Confidence 3334455667888999999999999999999999554 5566689999999999999999988777766543 457999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeecccee
Q psy5549 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRL 190 (331)
Q Consensus 111 ~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (331)
|+..|++.+++......+|++++++||+|||+||+ +|.+++.++++....+++.|+.+++.++|.++.......+.+..
T Consensus 101 G~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv-~p~~~~~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~ 179 (338)
T PHA03234 101 NQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLH-RRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYG 179 (338)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeee-chhhhhhhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCC
Confidence 99999999999999999999999999999999999 88776644444455666679999999999887654332222335
Q ss_pred EEeeeCCCCCcccchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHH
Q psy5549 191 ICTIVFPNVPTVSVSTAFT---VVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCV 267 (331)
Q Consensus 191 ~C~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
.|...++.++. ...+. .....+++++|++++.+||.+|.+++++.++ ++++|.+|++++++++
T Consensus 180 ~C~~~~~~~~~---~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~-----------~~~~k~~k~i~~vv~v 245 (338)
T PHA03234 180 KCNIHISSKKA---YDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTE-----------KKHKKTLFFIRILILS 245 (338)
T ss_pred cCcccCCcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhhhhhhHHHHHHHH
Confidence 78776543221 12221 1233345789999999999999999876422 4568899999999999
Q ss_pred HHHhhhhHHHHHHHHHhcCCCC-CCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 268 ILAMWLPIFLTMILIYIDGRRP-TADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 268 f~i~~~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
|++||+|+++..+++....... ..............++..++++||++||+||++.+++||+++
T Consensus 246 F~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~ 310 (338)
T PHA03234 246 FLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRF 310 (338)
T ss_pred HHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHH
Confidence 9999999999887655421110 111101111135678889999999999999999999999864
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=8.3e-42 Score=296.82 Aligned_cols=286 Identities=19% Similarity=0.243 Sum_probs=212.9
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCC--CchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCc
Q psy5549 33 YTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPAL--QTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110 (331)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~--~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~ 110 (331)
|+..+..+..+.+...++.+++++|++||+++++++.++++. ++..+.+++|||++|++..+.+|+.+... ...|..
T Consensus 22 c~~~~~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~~~-~~~~~~ 100 (409)
T PHA03235 22 CVPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIMLSN-QGLLSG 100 (409)
T ss_pred CCchhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CccccC
Confidence 333444466778899999999999999999999875543332 35678999999999998755888776542 122334
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheecee---e-
Q psy5549 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQE---V- 185 (331)
Q Consensus 111 ~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~---~- 185 (331)
++..|++.+++...+..+|.+++++||+|||++|+ +|.+++ .+++++..+++++|+.++++++|..++..... .
T Consensus 101 g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~-~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~ 179 (409)
T PHA03235 101 SVAGCKFASLLYYASCTVGFATVALIAADRYRVIH-QRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVD 179 (409)
T ss_pred CCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHee-chhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 57899999999999999999999999999999999 787666 66888999999999999999999765432111 1
Q ss_pred --ccceeEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHH
Q psy5549 186 --LESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCI 263 (331)
Q Consensus 186 --~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (331)
..+...|...+..+........+.....++.+++|+++++++|.+|+++++++.+ ++++|..+++++
T Consensus 180 ~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-----------~~~~k~~~~v~i 248 (409)
T PHA03235 180 PEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-----------KKRSRTLTFVCI 248 (409)
T ss_pred cCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hcchhhhhhHHH
Confidence 1234578765543322111223455566777899999999999999999987643 334567788888
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcCCCC-CCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 264 SVCVILAMWLPIFLTMILIYIDGRRP-TADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 264 ~~~~f~i~~~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
++++|++||+|+.+..++..+..... ...........+..+...+.++|+++||+||++.+++|||++
T Consensus 249 ivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~ 317 (409)
T PHA03235 249 LLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRF 317 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHH
Confidence 99999999999999988775532111 110001111135678889999999999999999999999864
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=6.2e-41 Score=285.60 Aligned_cols=276 Identities=20% Similarity=0.358 Sum_probs=209.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCchhhhhhhhh
Q psy5549 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMP 119 (331)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 119 (331)
+....+...++.+++++|++||+++++++.++++ +++.|.+++|||++|++..+.+|+.+.... ++|.+|+..|++.+
T Consensus 25 ~~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~~lP~~i~~~~-~~w~~g~~~C~~~~ 102 (323)
T PHA02834 25 SDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVFSFPFIIHNDL-NEWIFGEFMCKLVL 102 (323)
T ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHc-CCcCCcchHHHhHH
Confidence 3455678899999999999999999998877555 457899999999999987558898766544 47999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCC
Q psy5549 120 YSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPN 198 (331)
Q Consensus 120 ~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 198 (331)
++...+..+|.+++++||+|||.+|+ +|.+++ .+.+++...++.+|+.+++.++|+....... ...+...|......
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~aI~-~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~-~~~~~~~C~~~~~~ 180 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYILVV-NATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVD-NTDNLKQCIFNDYH 180 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhee-CchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhc-cCCCceEEeccCCc
Confidence 99999999999999999999999999 888766 5567777888899999999999987764332 22234568643222
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHH
Q psy5549 199 VPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLT 278 (331)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~ 278 (331)
.+. .....+.....+..+++|+++++++|.+|.+++|++++ ++++|..|++++++++|++||+|+.+.
T Consensus 181 ~~~-~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-----------~~~~k~~k~~~~vv~~F~icWlPy~i~ 248 (323)
T PHA02834 181 ENF-SWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-----------KNKTRSIKIILTVVTFTVVFWVPFNIV 248 (323)
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------cccceEEeehhHHHHHHHHHHhhHHHH
Confidence 211 00112233345778999999999999999999987643 335678889999999999999999999
Q ss_pred HHHHHhcCCCCC--CchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 279 MILIYIDGRRPT--ADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 279 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
.++......... .............++..+.++||++||+||++.+++||+++
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~ 303 (323)
T PHA02834 249 LFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVF 303 (323)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHH
Confidence 887665432111 10000000013457788999999999999999999999864
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=287.43 Aligned_cols=278 Identities=21% Similarity=0.419 Sum_probs=216.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCchhhhhhhh
Q psy5549 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM 118 (331)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~ 118 (331)
.+........++.+++++|++||+++++++. +|++|+..+++++|||++|++..+.+|+.+... .++|.+++..|++.
T Consensus 94 ~~~~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~-~~~W~fg~~~Ck~~ 171 (417)
T PHA02638 94 YPSISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFIIYNE-FDQWIFGDFMCKVI 171 (417)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccchhhH
Confidence 3345567788899999999999999997764 577889999999999999999877889887665 46899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheecee-------ec--c
Q psy5549 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQE-------VL--E 187 (331)
Q Consensus 119 ~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~-------~~--~ 187 (331)
.++......++.++++++++|||+||+ +|.+++ .++++....++++|+.++++++|..+...... .+ .
T Consensus 172 ~~l~~~~~~~Si~~L~~isiDRYlaIv-~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~ 250 (417)
T PHA02638 172 SASYYIGFFSNMFLITLMSIDRYFAIL-YPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETI 250 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCc
Confidence 999999999999999999999999999 887765 56677788889999999999999988654321 11 1
Q ss_pred ceeEEeeeCCCCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHH
Q psy5549 188 SRLICTIVFPNVPT--VSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISV 265 (331)
Q Consensus 188 ~~~~C~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (331)
....|...++.+.. ......+.....++.+++|++++++||.+|++++++.++ ++++|..|+++.++
T Consensus 251 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-----------~~k~k~~rli~~iv 319 (417)
T PHA02638 251 SNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-----------SKKTKSIIIVSIII 319 (417)
T ss_pred cCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchhhhhHHHHH
Confidence 24578765433221 001122334456777899999999999999999987543 34567789999999
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCC-------CCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 266 CVILAMWLPIFLTMILIYIDGRRP-------TADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 266 ~~f~i~~~P~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
++|++||+|+.+..++........ .... .........++..++++|+++||++|++.+++|||++
T Consensus 320 i~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~-~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l 391 (417)
T PHA02638 320 ICSLICWIPLNIVILFATMYSFKGFNSIISEHICG-FIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHL 391 (417)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcccccccccccc-HHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHH
Confidence 999999999999988876542111 1111 0011135567889999999999999999999999964
No 6
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=276.81 Aligned_cols=283 Identities=20% Similarity=0.393 Sum_probs=223.5
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCchhh
Q psy5549 34 TEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDV 113 (331)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~~~~ 113 (331)
......+..+.+...++.+++++|++||+++++++.++ ++|++.+.++.|||++|++.++..|.........+|..++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~ 109 (335)
T PHA03087 31 DLNIGYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEF 109 (335)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcH
Confidence 33444455677888899999999999999999999888 88999999999999999998887777765666678889999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeE
Q psy5549 114 LCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLI 191 (331)
Q Consensus 114 ~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (331)
.|+...++......+|.+++++||+|||++++ +|.+++ .+.+++..+++++|+.+++.+.|........ .+.+...
T Consensus 110 ~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~-~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~-~~~~~~~ 187 (335)
T PHA03087 110 ACKIVSGLYYIGFYNSMNFITVMSVDRYIAIV-HPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK-KDHETLI 187 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeee-ccCCCce
Confidence 99999999999999999999999999999999 888877 7888999999999999999999887776544 3345567
Q ss_pred EeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHh
Q psy5549 192 CTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAM 271 (331)
Q Consensus 192 C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~ 271 (331)
|...++.... ...........++.+++|.++++++|.++.+++++++++ ++++|..|++.+++++|++|
T Consensus 188 C~~~~~~~~~-~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~----------~~~~k~~k~l~~iv~~f~i~ 256 (335)
T PHA03087 188 CCMFYNNKTM-NWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS----------KKNKKAIKLVLIIVILFVIF 256 (335)
T ss_pred EEecCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------hhcchHHHhHHHHHHHHHHH
Confidence 8777653321 111222333456778999999999999999988876431 45678899999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCC-CchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 272 WLPIFLTMILIYIDGRRPT-ADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 272 ~~P~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
|+|+.+..++......... .............+...+..+|+++||+||++++++||++
T Consensus 257 w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~ 316 (335)
T PHA03087 257 WLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH 316 (335)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence 9999998877654221111 1110111113556788899999999999999999999976
No 7
>KOG4220|consensus
Probab=100.00 E-value=3.5e-40 Score=269.55 Aligned_cols=279 Identities=21% Similarity=0.373 Sum_probs=242.2
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhhhh
Q psy5549 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK 116 (331)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~C~ 116 (331)
...+...+.+++...++++.++||++|++.+--.|++++..|+|+++||+||++.+. .+|++..+.+.+.|+.|...|.
T Consensus 25 ~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~Cd 104 (503)
T KOG4220|consen 25 YETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCD 104 (503)
T ss_pred ccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHH
Confidence 444566788889999999999999999999988999999999999999999999999 9999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheecee--eccceeEE
Q psy5549 117 IMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQE--VLESRLIC 192 (331)
Q Consensus 117 ~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~C 192 (331)
+...+.+....+|++.+..|++|||+.|. +|+.|+ ++.+++..++++.|++++++-.|..+.|.... .......|
T Consensus 105 lWLalDYvaSNASVmNLLiISFDRYFsVT-rPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC 183 (503)
T KOG4220|consen 105 LWLALDYVASNASVMNLLIISFDRYFSVT-RPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGEC 183 (503)
T ss_pred HHHHHHHHhhhhhhhhhheeeeecceeec-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCce
Confidence 99999999999999999999999999999 999999 99999999999999999999999999888765 34456678
Q ss_pred eeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccc---------------------------
Q psy5549 193 TIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHS--------------------------- 245 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~--------------------------- 245 (331)
..++-+.+. ...-..+..|.+|+.+|.++|.+|++..+++.+.....
T Consensus 184 ~iQFlsnp~------iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPA------ITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCce------eehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 877665332 33445566789999999999999999998887642000
Q ss_pred --------------------------------------------------------------------------------
Q psy5549 246 -------------------------------------------------------------------------------- 245 (331)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (331)
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~ 337 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGL 337 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCcccc
Confidence
Q ss_pred -----------------------------------------c--------------------c-----cchhhhhhhHHH
Q psy5549 246 -----------------------------------------H--------------------L-----SSHHARHTRVMR 259 (331)
Q Consensus 246 -----------------------------------------~--------------------~-----~~~~~~~~~~~~ 259 (331)
. + .....+|+|++|
T Consensus 338 ~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAk 417 (503)
T KOG4220|consen 338 NTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAK 417 (503)
T ss_pred ccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHH
Confidence 0 0 000167899999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 260 MLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 260 ~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
++..+.+.|+++|+||.|+.++..+........ +..+..+|.++||-+||++|+++|+.|||.|
T Consensus 418 TLsAILlAFIiTWtPYNImVlv~tFC~~CiP~t--------lW~~gYwLCYINSTiNP~CYALCNatFrkTf 481 (503)
T KOG4220|consen 418 TLSAILLAFILTWTPYNIMVLVNTFCKNCIPET--------LWTFGYWLCYINSTINPLCYALCNATFRKTF 481 (503)
T ss_pred HHHHHHHHHHHHcccceeeeehHhhcccccchh--------HhhhhhheeeecccccHHHHHHHhHHHHHHH
Confidence 999999999999999999999999887766543 7789999999999999999999999999975
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=3.1e-35 Score=243.93 Aligned_cols=250 Identities=28% Similarity=0.520 Sum_probs=215.7
Q ss_pred hcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5549 60 ANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISM 138 (331)
Q Consensus 60 ~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isi 138 (331)
||.+++.++.++|++|++.+++++|||++|++.++ ..|........++|..++..|++..++.......+.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999 77777777666789999999999999999999999999999999
Q ss_pred HhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccc-eeEEeeeCCCCCcccchhHHHHHHHHH
Q psy5549 139 DRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLES-RLICTIVFPNVPTVSVSTAFTVVMVVL 215 (331)
Q Consensus 139 dR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
|||++++ +|.+++ .+++++...++++|+.+++.+.|..+.........+ ...|..+..... ...+.....++
T Consensus 81 dRy~~i~-~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~----~~~~~~~~~~~ 155 (257)
T PF00001_consen 81 DRYLAIC-HPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSS----SQIYFIYFFIV 155 (257)
T ss_dssp HHHHHHH-SHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSH----HHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccc
Confidence 9999999 998888 778999999999999999999999887555443333 678998876543 34577777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhcc---ccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCc
Q psy5549 216 ACLLPLALLVYYYCAIFRKLVETKKKWEH---SHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTAD 292 (331)
Q Consensus 216 ~~~~p~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~ 292 (331)
.+++|+++++++|.++.+++|+++++..+ +..+++.++++|.++++..++++|++||+|+.+..++....+......
T Consensus 156 ~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~ 235 (257)
T PF00001_consen 156 FFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLIS 235 (257)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSH
T ss_pred ccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhh
Confidence 89999999999999999999999886533 234455588999999999999999999999999999998887773312
Q ss_pred hhhhhhhhhhHHHHHHHhhhccccceeh
Q psy5549 293 TEFFLRSHHFLWPLLLALANTVVNPTLI 320 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~nP~iy 320 (331)
. ....+..++.++|+++||++|
T Consensus 236 ~------~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 236 S------ILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHhhCcEEC
Confidence 1 588999999999999999998
No 9
>KOG2087|consensus
Probab=99.92 E-value=6e-26 Score=184.74 Aligned_cols=263 Identities=17% Similarity=0.206 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-Hhhhhhhhhc-------cCCCCchhhhhhh
Q psy5549 46 EICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARV-------SPQWPLGDVLCKI 117 (331)
Q Consensus 46 ~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~-------~~~~~~~~~~C~~ 117 (331)
.-+.--++..++++||.+|+......+...+....++.|+|.+|+++++ .......... +..|..+...|++
T Consensus 27 lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~ 106 (363)
T KOG2087|consen 27 LRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPV 106 (363)
T ss_pred eeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCch
Confidence 3344456788899999999999998888888999999999999999999 3333222221 1123356789999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeee
Q psy5549 118 MPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIV 195 (331)
Q Consensus 118 ~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 195 (331)
.+|+..++...|++.++.+++||+++|. .|++.+ ...|....+++..|+.+.+.+..+.++.+. ......|.+.
T Consensus 107 aGflavFASElSv~~LT~itlEr~l~i~-~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~---Y~~~~vClPL 182 (363)
T KOG2087|consen 107 AGFLAVFASELSVFLLTLITLERWLSIT-YPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS---YGASSVCLPL 182 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhee-ccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC---Ccccceeeec
Confidence 9999999999999999999999999999 888766 444448899999999999999888888654 4456789876
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhH
Q psy5549 196 FPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPI 275 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~ 275 (331)
...+.. ...+.....+....+.++++..+|++++..+++...... .+..+.+|.+..++..-++||.|.
T Consensus 183 ~~~~~~---s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~--------~~~~~~akr~a~LvfTd~icw~Pi 251 (363)
T KOG2087|consen 183 HIEEPL---STGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT--------LISTSVAKRMAFLVFTDCICWCPI 251 (363)
T ss_pred ccCCcc---chhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc--------cchhhhhhCeeEEEEccccccCch
Confidence 655544 333677777788899999999999999998887655211 112477788888899999999999
Q ss_pred HHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 276 FLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 276 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
..+.+....+.+...... ...+.....-+|+++||++|.+.++.||+.
T Consensus 252 ~f~~~~al~~~~li~~~~-------sk~llv~flPlns~~NP~LYa~fT~~fk~d 299 (363)
T KOG2087|consen 252 AFFKFSALIGVELISVSY-------SKWLLVFFLPLNSCLNPFLYAFFTPVFKED 299 (363)
T ss_pred heeeeHHhcCCcccChhh-------ceeEEEEEEEcccccCchhHHHcCHHHHHH
Confidence 999999888877776664 555666777889999999999999999974
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.91 E-value=1.6e-24 Score=178.06 Aligned_cols=249 Identities=14% Similarity=0.151 Sum_probs=182.4
Q ss_pred HHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhhhhhhhhHHHHHHHHHHHHH
Q psy5549 55 ILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTL 133 (331)
Q Consensus 55 ~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 133 (331)
++|++||..++.++.|+|++|++.+++++.+|++|++.+. ..|...... ++...+...|-.+.+...++...+...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999 777666333 3344678899999999999999999999
Q ss_pred HHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcccchhHHHHH
Q psy5549 134 TLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVV 211 (331)
Q Consensus 134 ~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 211 (331)
.+|++||++||+ .|.+|+ .+.++.........+.+..... ......+++....|.+....++. .......
T Consensus 80 l~i~iDr~iaV~-~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~C~pp~a~~~~---~~~~~~~ 151 (257)
T PF10320_consen 80 LAIAIDRLIAVC-FPLRYRTISTRKYLIILLIFPVIYSIFFTV----IGFLYRDDETIVICNPPLAFHGT---ASQIWSY 151 (257)
T ss_pred HHHHhhheeeEe-ehhhhhhcccccchhhHhHHHHHHHHHHHh----heeEecCCcccccCCCccccCcc---HHHHHHH
Confidence 999999999999 999999 4444444444444444444332 22222244457789877655433 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCC
Q psy5549 212 MVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTA 291 (331)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~ 291 (331)
... ++ -+++++.|.......|++.++ ++++++|..|.+...++.++.+|.-..+...+....+.+.+.
T Consensus 152 ~~~---~i-nv~tvivY~i~~~~~~~k~~~--------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~ 219 (257)
T PF10320_consen 152 SNI---II-NVITVIVYIITIIIFKRKSRS--------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGET 219 (257)
T ss_pred HHH---HH-HHHHHHHHHHHHHHHHHHccc--------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHH
Confidence 122 22 233455666666666655442 226688999999999999999998888887777665554443
Q ss_pred chhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 292 DTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
.. .+.....++...+.+.|.++|.++|+||||+|
T Consensus 220 ~~------~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af 253 (257)
T PF10320_consen 220 IA------IIQMYAGIFVNISYSQNFFVYYWRSSEYRKAF 253 (257)
T ss_pred HH------HHHHHHHHHHHHHHHHHheEEEEcCHHHHHHH
Confidence 33 46778889999999999999999999999975
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.87 E-value=2.4e-21 Score=165.51 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=201.7
Q ss_pred HHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccC---C--CC----chhhhhhhhhhH
Q psy5549 52 IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSP---Q--WP----LGDVLCKIMPYS 121 (331)
Q Consensus 52 ~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~---~--~~----~~~~~C~~~~~~ 121 (331)
++.++|+++|.+.+.++.|+..+.++.|.++..+|++|++..+ ..+........+ + .+ .......+...+
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 3568999999999999855444335899999999999999999 666655443322 1 11 122344455678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCccCc----cchhhHHHHHHHHHHHHHHHhhhhhhheeceeec---cceeEEee
Q psy5549 122 QFVCGFVLLWTLTLISMDRYFCIVVPPYRSK----LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVL---ESRLICTI 194 (331)
Q Consensus 122 ~~~~~~~s~~~~~~isidR~~ai~~~p~~~~----~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~C~~ 194 (331)
...+...|.|..++||+.|++++. .|.+.+ .+++.+..++.++.+.+..+..+..+.....+.+ .+...|..
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~-~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIK-FPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 899999999999999999999999 877665 5778888888999999999999988766554322 23456862
Q ss_pred eCC---CCCcc----c--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHH
Q psy5549 195 VFP---NVPTV----S--------VSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMR 259 (331)
Q Consensus 195 ~~~---~~~~~----~--------~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
... .+... + ....+.....++.-++|.++..+....+.+.+|+.++++++..+++ .+++.+.++
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~-~~~~~~tt~ 242 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK-SKKSDRTTK 242 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc-cccccchHH
Confidence 211 11100 0 0012222333444789999999999999999999988765554333 467888999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 260 MLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 260 ~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+++.+++.|+++.+|..+..+++....+......... ....+...+..+|+..|++||..++.+||++
T Consensus 243 li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t 310 (318)
T PF10324_consen 243 LILFMTISFLISELPQGIIFLLESFFEEDSGLIFIII---QLSIIFNILITINSSIHFFICCFMSSQYRKT 310 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH---HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH
Confidence 9999999999999999999999887444332222122 4778889999999999999999999999986
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.85 E-value=8.3e-20 Score=152.33 Aligned_cols=261 Identities=14% Similarity=0.160 Sum_probs=181.9
Q ss_pred HHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCC-chhh-hhhhhhhHHHHHHHHH
Q psy5549 52 IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWP-LGDV-LCKIMPYSQFVCGFVL 129 (331)
Q Consensus 52 ~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~-~~~~-~C~~~~~~~~~~~~~s 129 (331)
.++++|++.|.+++..+.|.+++|++.+.+..+.|++|.+.+.....+..+....+.+ ..+. .-.+.+.....+...+
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG 81 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999443333333332222 2332 3445588888999999
Q ss_pred HHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcccchhH
Q psy5549 130 LWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTA 207 (331)
Q Consensus 130 ~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 207 (331)
.++..+||+||++|+. .|.+|+ .+.+.+..+++++|+.++....+.....+.....+++..-... +.++. -..
T Consensus 82 ~~~~~liaiNRf~ai~-fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~-~~~~~---C~~ 156 (274)
T PF10328_consen 82 PLSHLLIAINRFCAIF-FPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY-PTDPP---CGN 156 (274)
T ss_pred HHHHHHHHHHHHheee-eHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec-CCCCc---cch
Confidence 9999999999999999 888888 8999999999999999997776666554443322333333322 22211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh--ccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Q psy5549 208 FTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKW--EHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYID 285 (331)
Q Consensus 208 ~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~ 285 (331)
+...........-.+++.+++..+..++++.+++. ..++.++++|+|.+..++....-+.+.+.++-+....-+ .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~ 233 (274)
T PF10328_consen 157 YSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---S 233 (274)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 22222233333344555666666666666665544 334455666889999999999999999988777665433 1
Q ss_pred CCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 286 GRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+... ...........+..++|++|+...|+|+|++
T Consensus 234 ---~~~~-------~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~ 268 (274)
T PF10328_consen 234 ---SNRW-------WQFFCTTFSWVLVHALDGLIMLIFNSEIRRK 268 (274)
T ss_pred ---cccH-------HHHHHHHHHHHHHHHhcceeEeEEcHHHHHH
Confidence 1111 2445555556777889999999999999975
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.73 E-value=3.5e-16 Score=131.30 Aligned_cols=276 Identities=14% Similarity=0.161 Sum_probs=185.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeeee---cCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhhhhh
Q psy5549 42 EMSAEICLLSIIFILSMGANLFVLITVMW---YPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKI 117 (331)
Q Consensus 42 ~~~~~~~~~~~~~~~g~~~N~~vi~~i~~---~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~C~~ 117 (331)
...+..++..+..++|++||++++.+..+ +++.-++.+..+.+||+++++... ............+....+..++.
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 34566788889999999999999988874 333336999999999999999988 44444444444555566778999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cc----hhhHHHHHHHHHHHHHHHhhhhhhheeceeec---cce
Q psy5549 118 MPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LT----PHRVLLLTLGTWFIACVVFVPVVLWFREQEVL---ESR 189 (331)
Q Consensus 118 ~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~----~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~---~~~ 189 (331)
..+...+....+.|..+++++--++.|+..+.+.. .= .+....++.+.++.+++...+........... ...
T Consensus 85 ~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~ 164 (303)
T PF05296_consen 85 IDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNS 164 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCC
Confidence 99999999999999999999999999993322222 22 22234456677777773333322222221110 111
Q ss_pred eEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccc---ccchhhhhhhHHHHHHHHHH
Q psy5549 190 LICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSH---LSSHHARHTRVMRMLCISVC 266 (331)
Q Consensus 190 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 266 (331)
..+......... ...+..........+|+++++++...+...++||.|++++.. +..+.+.+.|+.|++....+
T Consensus 165 ~N~t~~~~~~~~---~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ 241 (303)
T PF05296_consen 165 RNSTSNFQESKS---SYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLI 241 (303)
T ss_pred CcceEEeecchH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 111111111111 333444445588899999999999999999999999875432 23444788889999887777
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 267 VILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 267 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
.|+++++-. ++.......+... ....+......+++..+|++.++.|+++|+++
T Consensus 242 ly~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~ 295 (303)
T PF05296_consen 242 LYIIYFLSL----ILSFLSFFFPENS-------IWFWVCEIIIALYPSGHSIILILGNPKLRQAL 295 (303)
T ss_pred HHHHHHHHH----HHHHHHHHhcccc-------HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 777755433 3322222122222 25677888999999999999999999999974
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.69 E-value=1.7e-15 Score=125.64 Aligned_cols=254 Identities=14% Similarity=0.142 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhhhhhhhhHH
Q psy5549 44 SAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQ 122 (331)
Q Consensus 44 ~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 122 (331)
.....+..+.++++++|.++++..+.+.|++|++.+.++.-++++|++..+ ....... ++...++..|+.++++.
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~~~s~lC~~Qafli 82 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAGENSFLCQFQAFLI 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCcchhhHhHHH
Confidence 455667778899999999999999999999999999999999999999887 4322211 22334578899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcc
Q psy5549 123 FVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTV 202 (331)
Q Consensus 123 ~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 202 (331)
+++..++.+..++||++=|+.++ ++.. ..+|.-....+.+|.++++.+..++... . +...+..|+...+.+.
T Consensus 83 q~f~~as~lWt~~iA~nly~~~~-~~~~--~~~k~e~~Y~l~~wGiPli~a~i~l~~~-~--~g~~G~WCWI~~~~~~-- 154 (303)
T PF05462_consen 83 QFFMLASFLWTLCIAFNLYLTFV-KRYD--ELEKLEKYYHLVCWGIPLIPAVIPLIGN-D--YGPAGNWCWIKPEWDV-- 154 (303)
T ss_pred HHhhHHHHHHHHHHHHHhhheeE-EcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHcc-C--CCCCCCceeecCCCcc--
Confidence 99999999999999999999988 4322 3456666788999999999887665432 2 3445568998754221
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy5549 203 SVSTAFTVVMVVLACLLPLALLVYYYCA-IFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMIL 281 (331)
Q Consensus 203 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~ 281 (331)
+.. ..+.+|+.+++..... +....+...+..+.. ..++++++.+....+..-.++|++||+|..+-.+.
T Consensus 155 -----~r~----~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~-~sd~~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~ 224 (303)
T PF05462_consen 155 -----WRF----ALFYIPLWIIIIISAILVGITMRYIYRVIRNG-VSDNKDKHLKYQLKLVNYPLIFIICWIFATINRIY 224 (303)
T ss_pred -----hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2233443222211111 111111111111111 11111222333333556899999999999999999
Q ss_pred HHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeecccccc
Q psy5549 282 IYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISY 329 (331)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~ 329 (331)
+..+. .+. +...+-..+..+...+|.++|++.++-.+|
T Consensus 225 ~~~~~-~~~---------~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~ 262 (303)
T PF05462_consen 225 NFIGK-NPF---------WLSVLHVGFSPLQGFFNSIVYGYNNSLMWR 262 (303)
T ss_pred HHhcC-Cch---------HHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 98753 221 255666677888999999999998886655
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.68 E-value=1.1e-16 Score=133.41 Aligned_cols=259 Identities=13% Similarity=0.170 Sum_probs=167.9
Q ss_pred HHhhhcceeeeeeeecCC----CCchhhHHHHHHHHHHHHHHh-Hhhhhhhhhc--cCC--CCchhhhhhhhhhHHHHHH
Q psy5549 56 LSMGANLFVLITVMWYPA----LQTVTNYFLLNLTAADILFCL-SIPGIMYARV--SPQ--WPLGDVLCKIMPYSQFVCG 126 (331)
Q Consensus 56 ~g~~~N~~vi~~i~~~~~----~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~--~~~--~~~~~~~C~~~~~~~~~~~ 126 (331)
+.++-...++..+.|.|+ .+++.+.++.+.+++|++..+ .......... ..+ ...++..-++.........
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~ 86 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL 86 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344555555555655444 457899999999999999998 3322222221 000 1122233556666777788
Q ss_pred HHHHHHHHHHHHHhhhhhccCCc-cCc--cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCccc
Q psy5549 127 FVLLWTLTLISMDRYFCIVVPPY-RSK--LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVS 203 (331)
Q Consensus 127 ~~s~~~~~~isidR~~ai~~~p~-~~~--~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 203 (331)
.......+.+|++||.||+ +|. ++. .++.+.+.++++-|+.+.+.++|.+...+.. ++..+. .....+++
T Consensus 87 ~~~~~gi~lls~nR~~ai~-~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~-f~~~~~--~~~~~d~~--- 159 (283)
T PF10323_consen 87 YIQCIGIVLLSLNRYLAIC-FPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFY-FDNEEN--MSLFVDPE--- 159 (283)
T ss_pred HHHHHhHHHHHHhhhheEE-eecHHHhhhccccchhheeeeeehhhhhheeeeeccCcee-eecccc--eeeecCHH---
Confidence 8899999999999999999 887 444 8888899999999999999999966654443 222222 11111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5549 204 VSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIY 283 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~ 283 (331)
..............+..+..+++|+.+...+||+.+ ...++..+++++|.|.+.+..+..+++++...=+.. .....
T Consensus 160 -~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k-~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~-~~~~~ 236 (283)
T PF10323_consen 160 -FIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK-KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIF-SNYFA 236 (283)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 222223333444556667889999999999998874 223334455588999888888777776654433322 22222
Q ss_pred hcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 284 IDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
....... . . ....+-..+..+.|.+||+.....|+++||++
T Consensus 237 ~~~~~~~-~--~----~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~ 277 (283)
T PF10323_consen 237 QNFNTDP-I--F----YLRAFYPILNGLLSFINPWMLLIFNKDLRKQV 277 (283)
T ss_pred hcccchH-H--H----HHHHHHHHHHHHHHhhhhHHhhhccHHHHHHH
Confidence 2221111 1 1 24457778888899999999999999999863
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.51 E-value=1.5e-12 Score=108.95 Aligned_cols=266 Identities=10% Similarity=0.038 Sum_probs=169.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCC-CCchhhhhhh
Q psy5549 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQ-WPLGDVLCKI 117 (331)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~-~~~~~~~C~~ 117 (331)
...+...+..+.+.+++-.+.+..++.++.+++..|.+.+-++.-|++.|+.... .....-.....|. .-..+..=.+
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i 108 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYI 108 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhh
Confidence 4566788889999999999999999999988888789999999999999999987 3222222222221 1111233345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc--cchhhHHHHHHHHHHHHHH--HhhhhhhheeceeeccceeEEe
Q psy5549 118 MPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK--LTPHRVLLLTLGTWFIACV--VFVPVVLWFREQEVLESRLICT 193 (331)
Q Consensus 118 ~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~--~~~~~~~~~i~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~C~ 193 (331)
.|.+...+..++......+++||..-+. ++.... +..++....+.+..+.++. +..++..+.. ...++
T Consensus 109 ~G~~~~~~W~~~c~~~i~LainR~~~l~-~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns-------~~~sw 180 (313)
T PF10321_consen 109 MGCIALGSWCGSCIICILLAINRCCELN-FPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNS-------EYMSW 180 (313)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHh-cchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCC-------CcceE
Confidence 5667788889999999999999999999 654444 4555544444333333222 2233333322 22233
Q ss_pred eeCCCC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhh
Q psy5549 194 IVFPNV-PTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMW 272 (331)
Q Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 272 (331)
...+.. +..+ ...|.-.......++-.+.+..+|..+...++++.++. ...+..+.+++...+..++.....+.+
T Consensus 181 ~fDP~i~~g~~-~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~---~s~~~~k~~~qI~iQs~iIC~f~~i~a 256 (313)
T PF10321_consen 181 FFDPMIFEGKS-PELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS---TSSQLSKAQRQIFIQSVIICFFHAIAA 256 (313)
T ss_pred ecCccccCCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222211 0000 22233334444455556778888999988888886632 333444667777777777777766655
Q ss_pred hhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 273 LPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 273 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
+-|..... . . .+. +...+.....-+++..+|+||...||..|+++
T Consensus 257 ~iyv~m~f---~-~---~p~-------~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~ 301 (313)
T PF10321_consen 257 VIYVYMQF---F-P---PPP-------WLIIIGQISWQLSHGCPPIIYLTLNRTIRNSV 301 (313)
T ss_pred HHHHeeee---e-c---ccH-------HHHHHHHHHHhccCCccceEEEEECHHHHHHH
Confidence 43322221 1 1 112 36778889999999999999999999999863
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.48 E-value=3.1e-13 Score=109.21 Aligned_cols=240 Identities=18% Similarity=0.207 Sum_probs=170.1
Q ss_pred CCchhhHHHHHHHHHHHHHHh--HhhhhhhhhccCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcc-
Q psy5549 74 LQTVTNYFLLNLTAADILFCL--SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYR- 150 (331)
Q Consensus 74 ~~~~~~~~i~~lai~Dll~~~--~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~- 150 (331)
+.+|.+..+.+||+++++..+ ++|........ + .+++.+||+..++...+...|+.+.+++|+-.-+.|. +...
T Consensus 7 r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~-~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItIS-P~~s~ 83 (265)
T PF03402_consen 7 RLKPIDLILIHLALANILVLLSRGIPQTMAFFGW-K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITIS-PSNSR 83 (265)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc-c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEe-cCCch
Confidence 357899999999999999998 77854433222 2 3689999999999999999999999999998877777 5222
Q ss_pred -Cc---cchhhHHHHHHHHHHHHHHHhhhhhhheecee------eccceeEEeeeCCCCCcccchhHHHHHHHHHHHHHH
Q psy5549 151 -SK---LTPHRVLLLTLGTWFIACVVFVPVVLWFREQE------VLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLP 220 (331)
Q Consensus 151 -~~---~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~------~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (331)
.+ +.++.....+...|+..+++............ .......|.....+.. ..........+.-++.
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~----~~~~~~~~~~~~D~~f 159 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYI----VSSLFATLLSFRDVLF 159 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchh----hhhhhhhHHHhhHHHH
Confidence 22 55566677788899998888754433322111 1112346876543322 2222333344556777
Q ss_pred HHHHHHHHHHHHHHHHhchhhhcc---ccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhh
Q psy5549 221 LALLVYYYCAIFRKLVETKKKWEH---SHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFL 297 (331)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~ 297 (331)
+.+|+...+.+...+.||+++-+. .+...+...|.|+++++++++..|+..+....+.........+.+.
T Consensus 160 vgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~~------- 232 (265)
T PF03402_consen 160 VGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSPW------- 232 (265)
T ss_pred HHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCcc-------
Confidence 788999999999999888876533 2333444789999999999999999999988887655443333221
Q ss_pred hhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 298 RSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+.....++....+.+.|++....+++..|-
T Consensus 233 ---~~~~~~~ls~cfptisPfvLI~~d~~i~~~ 262 (265)
T PF03402_consen 233 ---LLNISVFLSSCFPTISPFVLISSDKRIIKF 262 (265)
T ss_pred ---eeEHHHHHhHHhHhhChHHhhccCchHHHH
Confidence 334677889999999999999999987763
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.34 E-value=1.5e-10 Score=97.41 Aligned_cols=266 Identities=13% Similarity=0.171 Sum_probs=172.2
Q ss_pred HHHHHHHHHhhhcceeeeeeeecCCCC-chhhHHHHHHHHHHHHHHhHhhhhhhhhccCC-----------CCchhhhhh
Q psy5549 49 LLSIIFILSMGANLFVLITVMWYPALQ-TVTNYFLLNLTAADILFCLSIPGIMYARVSPQ-----------WPLGDVLCK 116 (331)
Q Consensus 49 ~~~~~~~~g~~~N~~vi~~i~~~~~~~-~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~-----------~~~~~~~C~ 116 (331)
++.+.+.+|++.|.++++.+.++.... +...+++.|-|+.|++.++...+........+ ...++..|.
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~ 83 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCF 83 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHH
Confidence 567788999999999999988765543 67889999999999999983333333322222 125778899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheecee-eccceeEEeee
Q psy5549 117 IMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQE-VLESRLICTIV 195 (331)
Q Consensus 117 ~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~ 195 (331)
....+...+...+.+.+..--..||..+. ++.. ++++....+...+..++.............. .......-..+
T Consensus 84 ~~y~~~~~~~~~s~~~i~~sf~yRy~iL~-~~~~---~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 159 (292)
T PF10317_consen 84 FCYHIMLHFSIHSGWSIILSFYYRYYILR-NPSP---SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPE 159 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC---chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCcc
Confidence 88888888999999999999999999999 4322 5566666777777777776654443322211 00000011111
Q ss_pred CCC--------CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHH
Q psy5549 196 FPN--------VPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCV 267 (331)
Q Consensus 196 ~~~--------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
++. .+..+....+.........+...+++.++--++.+.++++.. .-..+.++..++..|.+....+.
T Consensus 160 y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~----~~S~~tk~~h~~lv~~Lt~Q~~l 235 (292)
T PF10317_consen 160 YNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSS----SMSERTKSMHRQLVKGLTIQALL 235 (292)
T ss_pred cccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh----hcCHHHHHHHHHHHHHHHHHHHh
Confidence 110 111111122222222222222233445555556666655332 22223336778888888899999
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 268 ILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 268 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
=.++..|.....++.......... .......+..+.+.+||++....=+.+||++
T Consensus 236 P~~~~~p~~~~~~~~~~~~~~~~~---------~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i 290 (292)
T PF10317_consen 236 PLFFYIPGVIIYFLSQFTGYEHPF---------LEYLIFMLASLPPLIDPLITLYFVRPYRKAI 290 (292)
T ss_pred HHHHHHHHHHHHHHHHHhccccHH---------HHHHHHHHHHHHHHhchHhheeeeHhHHHHh
Confidence 899999888888777776654432 4567777888899999999999999999974
No 19
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.23 E-value=2.6e-10 Score=89.54 Aligned_cols=160 Identities=12% Similarity=0.089 Sum_probs=110.2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q psy5549 72 PALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYR 150 (331)
Q Consensus 72 ~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~ 150 (331)
++++.-.+.++.||.++|++.++ .+.........++-..++..|..++++.+.....+-+...+||++-|+.+.+++.+
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34455566699999999999999 54434444444445567899999999999999999999999999999999944221
Q ss_pred Cc----------cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcccchhHHHHHHHHHHHHHH
Q psy5549 151 SK----------LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLP 220 (331)
Q Consensus 151 ~~----------~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (331)
.+ ..+.....+..+.|++...+ .+...+...+.+....|....+ ...+.....-+..++.
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~l---a~i~~~~~~Y~~~g~WCWi~~~-------~~~~Rl~l~y~~~~~~ 179 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASL---AFIGLGGPGYGPAGAWCWIPSR-------YEWYRLWLHYIWRFII 179 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHH---HHhccccCcccccCcEEEECCC-------cHHHHHHHHHHHHHHH
Confidence 11 11112222233444443333 3333222335667889998865 4446666667777777
Q ss_pred HHHHHHHHHHHHHHHHhchhh
Q psy5549 221 LALLVYYYCAIFRKLVETKKK 241 (331)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~ 241 (331)
...+++.|..++..+||+.++
T Consensus 180 ~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 180 IFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhcc
Confidence 888999999999999988763
No 20
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=99.04 E-value=6.3e-08 Score=81.67 Aligned_cols=271 Identities=14% Similarity=0.120 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHhhhcceeeeeeeecC-CCCchhhHHH----HHHHHHHHHHHh-HhhhhhhhhccC---CCCc--hhh
Q psy5549 45 AEICLLSIIFILSMGANLFVLITVMWYP-ALQTVTNYFL----LNLTAADILFCL-SIPGIMYARVSP---QWPL--GDV 113 (331)
Q Consensus 45 ~~~~~~~~~~~~g~~~N~~vi~~i~~~~-~~~~~~~~~i----~~lai~Dll~~~-~~p~~~~~~~~~---~~~~--~~~ 113 (331)
.....+-+++.++++.|.+.++.+..+. +..+ ...++ ....++|+-.++ ..|....+...+ ++.. -+.
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~-fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i 88 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDN-FRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccc-hhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCC
Confidence 3446777789999999999998777544 4443 33333 245678888887 777777766543 1100 112
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheecee-----ecc
Q psy5549 114 LCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQE-----VLE 187 (331)
Q Consensus 114 ~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~-----~~~ 187 (331)
.+.....+..+......-.++.--+-|..+|. +..+.+ .++...........+................+ ..+
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa-~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~ 167 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIA-RILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRE 167 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 33334445555555666666666788999999 655554 55554445555555555554433222111111 011
Q ss_pred ceeEEeeeC-CCCC--ccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHH
Q psy5549 188 SRLICTIVF-PNVP--TVS--VSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLC 262 (331)
Q Consensus 188 ~~~~C~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (331)
+...|.... +.++ ..+ ............+.........++...+.+.+++.+++..++ ..+++|++.+.+.
T Consensus 168 nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~----ty~kHk~av~SLi 243 (303)
T PF10327_consen 168 NYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQ----TYQKHKEAVRSLI 243 (303)
T ss_pred hCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHH
Confidence 111222221 1100 000 023333445555566677778888889999888887644332 3377888888888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 263 ISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 263 ~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+...+-.+|-+|..+.........++.. .+..........+|.+|-++..+.+++|||-
T Consensus 244 ~Q~~~~~i~~~P~~~~~~~~~~~~~~~q---------~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 244 AQFATSSICILPPFIFVVVVIFEFEDAQ---------VISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHhhhhheecCCCcH---------HHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 8888888888999887776666544332 2557778888999999999999999999985
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=99.04 E-value=1.1e-08 Score=85.67 Aligned_cols=258 Identities=11% Similarity=0.091 Sum_probs=153.6
Q ss_pred HHHHHHHhhhcceeeeeeeecCC--C-CchhhHHHHHHHHHHHHHHh-Hhhh-hhhhhccCC-------CCchhhhhhhh
Q psy5549 51 SIIFILSMGANLFVLITVMWYPA--L-QTVTNYFLLNLTAADILFCL-SIPG-IMYARVSPQ-------WPLGDVLCKIM 118 (331)
Q Consensus 51 ~~~~~~g~~~N~~vi~~i~~~~~--~-~~~~~~~i~~lai~Dll~~~-~~p~-~~~~~~~~~-------~~~~~~~C~~~ 118 (331)
.+-++.+++.+..++.++.++|+ . +++.+.+...-++.|++.-+ ..+. -......+. ....+...++.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 34567777888888888887776 4 67888888888888888877 4332 111110010 12334567777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCC
Q psy5549 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFP 197 (331)
Q Consensus 119 ~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 197 (331)
.++......+.......+|+||+-++. .|.++. .=+|....+++++.+.+.....+..........+++...-.....
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~-~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVL-FPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYNDT 163 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhHHHHhhhhhheeeeeehhHHHHHHHHccccEEEEECCceEEEEEec
Confidence 788888999999999999999999999 887777 333444456666666666655555554333333333222222111
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHH
Q psy5549 198 NVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFL 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i 277 (331)
. ............+++..++.++++....+++++.++ +.++.|++..+..+...+++++.-....+
T Consensus 164 ~------~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~--------~~~~~er~L~~is~~~~~~~~~~~~~~~~ 229 (275)
T PF02118_consen 164 V------SWASLSIFSLIYFIIIIIITIITNIITYRRLRKLSK--------RIKSVERNLTIISFIISFVQLLIAIWQII 229 (275)
T ss_pred c------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111112233333445555666777777777766543 12255777777777777776665544444
Q ss_pred HHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 278 TMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
.. .....+..+... ..........-.-+...|++....++++||+.
T Consensus 230 ~~-~~~~~~~~~~~~-------~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~v 275 (275)
T PF02118_consen 230 NS-FAFFFDFLPISS-------FLYYLLPFASDLLTLSQPYILLIFSKNVRRQV 275 (275)
T ss_pred HH-HHHhhccccHHH-------HHHHHHHHHHHHHHHHHHHHHheECHhhhccC
Confidence 21 122222222111 24444445555556778999999999999963
No 22
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.98 E-value=1.6e-07 Score=78.25 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeeeecCC----CC--chhhHHHHHHHHHHHHHHh-HhhhhhhhhccCC---------
Q psy5549 44 SAEICLLSIIFILSMGANLFVLITVMWYPA----LQ--TVTNYFLLNLTAADILFCL-SIPGIMYARVSPQ--------- 107 (331)
Q Consensus 44 ~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~----~~--~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~--------- 107 (331)
...-.+-+.-+.+|+.|-++-+.--.|... .+ ......+..+++||++.++ .+.-.......++
T Consensus 27 ~~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~ 106 (405)
T PF02101_consen 27 DAFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVN 106 (405)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCC
Confidence 344455666667777777666653322111 11 1235688999999999999 4433333222221
Q ss_pred --CCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceee
Q psy5549 108 --WPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEV 185 (331)
Q Consensus 108 --~~~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~ 185 (331)
.......|.......+++..++.+-..+-|+|-|+.+.+.+- ....+..=...|..+.++..-......
T Consensus 107 ~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag-----~~~~~lYH~~aWgl~~lL~~~Gl~~Ly---- 177 (405)
T PF02101_consen 107 GTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAG-----RSTIWLYHMMAWGLPALLCAEGLAMLY---- 177 (405)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCC-----CcchhHHHHHHHHHHHHHHHhccceee----
Confidence 112457899988888889999999999999999999883332 223345567788888887755443322
Q ss_pred ccceeEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchh----hhhhhHHHHH
Q psy5549 186 LESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHH----ARHTRVMRML 261 (331)
Q Consensus 186 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 261 (331)
.++...|..... ...-.-+...+|+++..+.+=.++++.-+......+.+..+.. +.....-+-.
T Consensus 178 ~Ps~~~Ce~~l~-----------~alphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kF 246 (405)
T PF02101_consen 178 YPSISRCESGLE-----------HALPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKF 246 (405)
T ss_pred cCCHHhhhhhhh-----------hcchhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 122223532111 1122223345666666655544444433332222111111122 3334444556
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCCCCC-----chhhhhhhhhhHHHHHHHhhhccccceeh
Q psy5549 262 CISVCVILAMWLPIFLTMILIYIDGRRPTA-----DTEFFLRSHHFLWPLLLALANTVVNPTLI 320 (331)
Q Consensus 262 ~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~nP~iy 320 (331)
+.+.++|.+||+|..+-.++..+....... ...........++..++.-++.++|-++|
T Consensus 247 f~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay 310 (405)
T PF02101_consen 247 FKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAY 310 (405)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHhhcccccccccccchhhHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 788999999999999888766542221111 10001001234444555555566777776
No 23
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.95 E-value=2.3e-07 Score=79.31 Aligned_cols=272 Identities=11% Similarity=0.101 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-Hhhhh---hhhhcc--C--CCCchhhhh
Q psy5549 44 SAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGI---MYARVS--P--QWPLGDVLC 115 (331)
Q Consensus 44 ~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~---~~~~~~--~--~~~~~~~~C 115 (331)
.....+..+++++|++.++..+....+++..|....+++...+++.++.+. -.... ++.... + +...+...|
T Consensus 17 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C 96 (324)
T PF10292_consen 17 RLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRC 96 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHH
Confidence 444556788888999888888888877788888899999999999999986 32222 222222 1 334577889
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccc-hhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEee
Q psy5549 116 KIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLT-PHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTI 194 (331)
Q Consensus 116 ~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~-~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 194 (331)
........++......+..++.+||++|.. ..-+|... +.....+..+.|+.+............. .+.....|..
T Consensus 97 ~~lR~~~~~~~~~~~~t~v~l~IER~iAT~-~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~~~~~~--~~~~~~yC~~ 173 (324)
T PF10292_consen 97 FILRIPYNFGLFLVSFTTVSLVIERTIATF-FSKSYEKSGKWLGILLAFFQILISLLILYFVYSDEDF--PNERMYYCQA 173 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhc--cCccceeeEE
Confidence 999999999999999999999999999999 66666633 3332344444455555433322222111 2444557887
Q ss_pred eCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh--ccccccchhhhhhhHHHHHHHHHHHHHHhh
Q psy5549 195 VFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKW--EHSHLSSHHARHTRVMRMLCISVCVILAMW 272 (331)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~ 272 (331)
..++... .........++.-++ ..+.+..++++=+|.+++. ...+.+=+.++..|..+.+...+.+..+.-
T Consensus 174 ~~~~~~~---~~~~~~~~~~~~~i~----~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~~ 246 (324)
T PF10292_consen 174 SSSSSPY---RVNIPFIVILVLQIL----ALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIFI 246 (324)
T ss_pred ecCCCch---hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 6554322 221222222222222 2222333333222222211 222223333667778888777777766666
Q ss_pred hhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 273 LPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 273 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+.+............+.+...+. ...-.....-.++.+-|++.....++.|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~y~-----al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~ 299 (324)
T PF10292_consen 247 FFYIFASIFLRLFNPSMSKPNYF-----ALAELNHIFPLYSIISPLILYRKIKKIRKK 299 (324)
T ss_pred HHHHHHHHHHHHhcccCChhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555444444433311 122222345557778888888877777763
No 24
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.89 E-value=2.3e-07 Score=73.77 Aligned_cols=270 Identities=16% Similarity=0.229 Sum_probs=167.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcc--eeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-Hh----hhhhhhhccCCCCchh
Q psy5549 40 EFEMSAEICLLSIIFILSMGANL--FVLITVMWYPALQTVTNYFLLNLTAADILFCL-SI----PGIMYARVSPQWPLGD 112 (331)
Q Consensus 40 ~~~~~~~~~~~~~~~~~g~~~N~--~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~----p~~~~~~~~~~~~~~~ 112 (331)
++..+.....+....+.+.+.++ +++.++..++-++-+...++..|.++-.+... .+ |-........+. ..+
T Consensus 9 ~~~yy~vi~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~-~~s 87 (305)
T PF04789_consen 9 NGLYYFVISLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEF-VQS 87 (305)
T ss_pred CcEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHH-hcc
Confidence 33334444455555555544443 44444444444455788999999999888776 33 444433333322 223
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccc---
Q psy5549 113 VLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLES--- 188 (331)
Q Consensus 113 ~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~--- 188 (331)
..-.+..+...++...-.+.=..||++|....-.+...++ +.......-+..+|+.+...-....-..-.++++..
T Consensus 88 ~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~ 167 (305)
T PF04789_consen 88 ELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKH 167 (305)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccccc
Confidence 3445666788888888899999999999988773344444 667777788889999999887776655544443322
Q ss_pred -eeEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHH
Q psy5549 189 -RLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCV 267 (331)
Q Consensus 189 -~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
...|......- ...........-.++.+.+|..+ ...|+.+..++-..++. ..++.|.+.+|..+.+.++
T Consensus 168 y~L~C~~~~~~v-~~~~P~~IqiiE~ilQ~~IPi~I-l~iYiAIIiKI~~MKks-------sLnK~Ei~ILKQAifIFvl 238 (305)
T PF04789_consen 168 YQLNCETCNSVV-DISPPRGIQIIEIILQFGIPIFI-LVIYIAIIIKIIKMKKS-------SLNKNEITILKQAIFIFVL 238 (305)
T ss_pred EEEEcCCCCeeE-eeCCCCchhHHHHHHHHhHHHHH-HHHHHHHHHHHHHHhhc-------cCCchhHHHHHHHHHHHHH
Confidence 22354331000 00113345567778888899754 44566666555443331 1126688888888777666
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeecccccc
Q psy5549 268 ILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISY 329 (331)
Q Consensus 268 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~ 329 (331)
|-. +..+..+-+...-+.... + .+..+.+.+-...++..|-...+.++|.||
T Consensus 239 FQ~---ss~VFl~~qt~~~~~~tA---F----lIKR~iNT~ei~agaatP~ffffTs~eirk 290 (305)
T PF04789_consen 239 FQA---SSCVFLLCQTFKFNVATA---F----LIKRIINTMEIFAGAATPCFFFFTSKEIRK 290 (305)
T ss_pred HHH---HHHHHHhheeeeecchHH---H----HHHHHHHHHHHHhhccCCeEEEEehHHHHH
Confidence 655 554444333333333222 2 377788888899999999999999999998
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.82 E-value=1.2e-09 Score=93.09 Aligned_cols=266 Identities=14% Similarity=0.226 Sum_probs=162.6
Q ss_pred HHHHHHHhhhcceeeeeeeecCCCCc-hhhHHHHHHHHHHHHHHh-Hh---hhhhhhh-----c--cCCCCchhhhhhhh
Q psy5549 51 SIIFILSMGANLFVLITVMWYPALQT-VTNYFLLNLTAADILFCL-SI---PGIMYAR-----V--SPQWPLGDVLCKIM 118 (331)
Q Consensus 51 ~~~~~~g~~~N~~vi~~i~~~~~~~~-~~~~~i~~lai~Dll~~~-~~---p~~~~~~-----~--~~~~~~~~~~C~~~ 118 (331)
-+.++++++.|.+.++.+.++.+.+. ....++...|+.|++.+. -. |...... . .+++..+....+..
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 35578899999999999876655443 455677889999999887 22 3221110 0 12233445556666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheeceee------------
Q psy5549 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEV------------ 185 (331)
Q Consensus 119 ~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~------------ 185 (331)
..+...+...+...++.--+.||.+++ +|.+-+ .+.++....++..-+.+..+...........+.
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~-~~~~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~ 164 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVC-RPKKLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLEN 164 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeec-cchhhccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccc
Confidence 667777788888888889999999999 655444 444443333333333333333222111111110
Q ss_pred ---ccceeE--EeeeC-CCCCc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhh
Q psy5549 186 ---LESRLI--CTIVF-PNVPT---VSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTR 256 (331)
Q Consensus 186 ---~~~~~~--C~~~~-~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (331)
+.++.. -...+ .+++. .+...............++..++++|-.++++++++..+.. ..+.++.+++
T Consensus 165 y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~----S~~~~~lq~Q 240 (307)
T PF10326_consen 165 YGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM----SSKTRKLQKQ 240 (307)
T ss_pred cCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc----ChhhHHHHHH
Confidence 000100 01111 11111 12223333444455567888899999999999996555421 2333366777
Q ss_pred HHHHHHHH-HHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 257 VMRMLCIS-VCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 257 ~~~~~~~~-~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
..+.+.+. .+-.++..+|..+.......+.+... ...+......+.+++||++-.+.-||+||++
T Consensus 241 Lf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~----------~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i 306 (307)
T PF10326_consen 241 LFKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGF----------FSNIISILISLYPAIDPLPVIFIIKDYRKAI 306 (307)
T ss_pred HHHHHHHHhhhhheeeecchhheeeeeccCCCCCc----------cccHhhhhEEEEeehhhheeeEeeHHHHHhh
Confidence 88887776 55677788999988877766644433 3346677888899999999999999999974
No 26
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.78 E-value=7.5e-06 Score=67.55 Aligned_cols=263 Identities=14% Similarity=0.081 Sum_probs=144.3
Q ss_pred HHHHHHHhhhcceeeeeeeecCCCCc-hhhHHHHHHHHHHHHHHh---Hhhhhhhhhc-------cCCCCc-hhhhhhhh
Q psy5549 51 SIIFILSMGANLFVLITVMWYPALQT-VTNYFLLNLTAADILFCL---SIPGIMYARV-------SPQWPL-GDVLCKIM 118 (331)
Q Consensus 51 ~~~~~~g~~~N~~vi~~i~~~~~~~~-~~~~~i~~lai~Dll~~~---~~p~~~~~~~-------~~~~~~-~~~~C~~~ 118 (331)
-+.++++.+.|-+-++.+..+|+.+- ....++..-|+-|++.++ ..|..+..+- .++|-. .+..-...
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~ 91 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHL 91 (310)
T ss_pred HHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHH
Confidence 45677889999999999988888773 666788899999999998 4455443321 122211 11122222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheec-ee------------
Q psy5549 119 PYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFRE-QE------------ 184 (331)
Q Consensus 119 ~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~-~~------------ 184 (331)
..........+-..+..=-+.||+++.++.+-.+ +.+......+...-.....+...-...... .+
T Consensus 92 ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e~ 171 (310)
T PF10319_consen 92 LSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFREV 171 (310)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 2233334444455555666899999993333333 444444444443333333333222221111 00
Q ss_pred --ecc---ceeEEeeeCCCCCcccchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhh
Q psy5549 185 --VLE---SRLICTIVFPNVPTVSVSTAFTVVMVVLAC----LLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHT 255 (331)
Q Consensus 185 --~~~---~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
.+. +...+.....++ +........+... .....+..+.-.+|.+++++.. ....++.++.++
T Consensus 172 YG~Ds~diNml~alY~eaS~-----~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~----~~mS~~T~~lq~ 242 (310)
T PF10319_consen 172 YGVDSMDINMLIALYNEASD-----ETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMS----STMSKKTKRLQR 242 (310)
T ss_pred hCCCCCcCceEeeeeccCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch----hhhCHhHHHHHH
Confidence 011 111122221111 2222222222221 2222222233333444443322 223333346777
Q ss_pred hHHHHHHHHH-HHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccCC
Q psy5549 256 RVMRMLCISV-CVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYTF 331 (331)
Q Consensus 256 ~~~~~~~~~~-~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~~ 331 (331)
+..|.+.+.+ +-.+++..|-.+......++..... +...........-+++||+.-.++-|.||+++
T Consensus 243 qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~---------~~n~~~~iAls~FPf~DPlAii~~lP~~R~ri 310 (310)
T PF10319_consen 243 QLFKALIVQTVIPICVSFSPCVLSWYGPIFGIDLGR---------WNNYFSVIALSAFPFLDPLAIILCLPAFRNRI 310 (310)
T ss_pred HHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCChhH---------HHHHHHHHHHHHccccCchHhheecHHhhccC
Confidence 8888888774 4467888898888766666644322 46677888888889999999999999999985
No 27
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.53 E-value=3.2e-08 Score=81.26 Aligned_cols=202 Identities=18% Similarity=0.185 Sum_probs=2.0
Q ss_pred HHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCchhhhhhhhhhHHHHHHHHHH
Q psy5549 51 SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLL 130 (331)
Q Consensus 51 ~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~ 130 (331)
.+-..+++++-.+.+......|++|+..+....|+++++++..+...........+..+.++..|+..+.+.+++..++.
T Consensus 8 ~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f 87 (242)
T PF00002_consen 8 YVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLHYFFLASF 87 (242)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhHHHHHHHH
Confidence 33344445555555555555577777778888999999998887222222211111111123359999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcccchhHHHH
Q psy5549 131 WTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTV 210 (331)
Q Consensus 131 ~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 210 (331)
..+.+.++|-|..+. .+.. ..+++.+...+..|..+.+.......... ..-+...|+.+.+... .
T Consensus 88 ~Wm~~~~~~l~~~~~-~~~~--~~~~~~~~~~~~gwg~P~~iv~i~~~~~~---~~y~~~~CWl~~~~~~---------~ 152 (242)
T PF00002_consen 88 FWMLVEAFYLYRLLV-KVFN--SSRRRFWWYYLIGWGIPALIVVISVAVNS---DGYGNDNCWLSNDWGF---------I 152 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhheeEE-Eeec--ccchhhheeeeeeecCcceeeeeeeeecc---cccccccccccCCCce---------E
Confidence 999999999999998 4422 23455566777889988888766555441 1223356755432111 1
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhchhhhccccccchhhhhh-hHHHHHHHHHHHHHHhhhhH
Q psy5549 211 VMVVLACLLPLALLVY----YYCAIFRKLVETKKKWEHSHLSSHHARHT-RVMRMLCISVCVILAMWLPI 275 (331)
Q Consensus 211 ~~~~~~~~~p~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~i~~~P~ 275 (331)
..+..|..+++. ....+.++++++.++ .+..++ ++++ +..+....+..++-++|...
T Consensus 153 ----~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~---~~~~~~-~~~~~~~~~~~~~L~~llg~~w~~~ 214 (242)
T PF00002_consen 153 ----WAFVGPVLIILLINIVIFILVLRVLVRKSRS---SDKSEK-KKRRKKILRASLILLPLLGITWLFG 214 (242)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ----EEEEecccceecccchhheeeEEeehhhhhh---hhhhhc-cchhhhHHHHHHHHHHHHHHHheee
Confidence 123444444433 334444444444331 111111 2222 36667667777777888663
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.41 E-value=1.1e-05 Score=66.51 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-Hhhhhhhhhcc---CCCCchhhhhhhhh
Q psy5549 44 SAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVS---PQWPLGDVLCKIMP 119 (331)
Q Consensus 44 ~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~---~~~~~~~~~C~~~~ 119 (331)
.+...+-.+.+.+....|..++..+..+|+.|++.-.+.--....|.+.++ ..+...+.... ++.......=-+.+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 455666777788899999999999987777444555566678899999999 54443333321 11110112222334
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchh
Q psy5549 120 YSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPH 156 (331)
Q Consensus 120 ~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~ 156 (331)
+...............||+||.+|+. .|..|+..++
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~-fPI~y~~~r~ 121 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVY-FPIFYHNYRK 121 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHccCc
Confidence 45556667788899999999999999 9988883333
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.34 E-value=5.5e-05 Score=64.28 Aligned_cols=272 Identities=16% Similarity=0.250 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHhhhcceeeeeeeecCCCC-chhhHHHHHH----HHHHHHHHh-HhhhhhhhhccCC----CCchhhh
Q psy5549 45 AEICLLSIIFILSMGANLFVLITVMWYPALQ-TVTNYFLLNL----TAADILFCL-SIPGIMYARVSPQ----WPLGDVL 114 (331)
Q Consensus 45 ~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~-~~~~~~i~~l----ai~Dll~~~-~~p~~~~~~~~~~----~~~~~~~ 114 (331)
......=++.+++++-|.+..+.+.++...+ +.....+.++ .+.|+..+. ..|....+...+. ...-...
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~ 84 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVP 84 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccC
Confidence 3455666778888888988888777654433 3444444444 456777777 6676655544321 1111344
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheecee----ecccee
Q psy5549 115 CKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQE----VLESRL 190 (331)
Q Consensus 115 C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~----~~~~~~ 190 (331)
..++.++..........+...+--+||.++. ...+....++..........+.+.....|........+ .-.+..
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~-~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~ 163 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQIII-RNRSRSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKY 163 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc
Confidence 6667777777888888888899999999999 43332233333444445556666666666666443211 011222
Q ss_pred EEeee--CCCCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHH
Q psy5549 191 ICTIV--FPNVPT--VSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVC 266 (331)
Q Consensus 191 ~C~~~--~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (331)
.|... .++++. ...+..+..........+....+++....+.+.++++.+ .....+.+|.++|..+.+.+.+.
T Consensus 164 pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~---~~~S~~T~k~Qkkfl~~l~iQ~~ 240 (302)
T PF10318_consen 164 PCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK---KTMSKKTRKMQKKFLIALIIQVL 240 (302)
T ss_pred cCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---hhhCHHHHHHHHHHHHHHHHHHH
Confidence 33221 110110 000111222333333333334444444555555555544 12222233667777777776655
Q ss_pred HHHHh-hhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 267 VILAM-WLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 267 ~f~i~-~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+..+. -.|..........+.... ....+...+...++...-++..+.++.+|+.
T Consensus 241 ip~~~l~~P~~~~~~~~~~~~~~q----------~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~ 295 (302)
T PF10318_consen 241 IPFIFLFIPLIYFIISIIFGYYNQ----------ALNNISFIIISLHGIASTIVMILVHKPYRKF 295 (302)
T ss_pred HHHHHHhhhHHHHHHHHhcccccc----------ccchHHHHHHHhccHHHHHHHhhccHHHHHH
Confidence 54444 457776665554443221 1456778888999999999999999999985
No 30
>KOG4193|consensus
Probab=98.17 E-value=3.4e-05 Score=70.53 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=129.6
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCchhh-hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q psy5549 72 PALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDV-LCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYR 150 (331)
Q Consensus 72 ~~~~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~ 150 (331)
|++++..+....||+++=++.-+.. ....... .... .|+..+++.+++..+....+.+++++-|..++ .-++
T Consensus 348 ~~l~~~~~~i~~~l~~~L~l~~l~f---L~~~~~~---~~~~~~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v-~vf~ 420 (610)
T KOG4193|consen 348 RKLQNDRTKIHINLCLCLFLAELLF---LLGIDRT---STSVVLCIAAAILLHFFFLAAFFWMLLEGFHLYLLLV-EVFR 420 (610)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHH---hcccccc---cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 4444433667777777722222211 1111111 1122 89999999999999999999999999999766 3222
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhhhhhheecee-eccceeEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5549 151 SKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQE-VLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYC 229 (331)
Q Consensus 151 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 229 (331)
. ...++........|....++...........+ .......|+.+.+..... . ++.|..+++.+++
T Consensus 421 ~-~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~---~----------F~GPv~~ii~~Ni 486 (610)
T KOG4193|consen 421 S-RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIW---S----------FLGPVTLIILVNI 486 (610)
T ss_pred c-ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEE---E----------EehHHHHHHHHHH
Confidence 2 34445555546899998887765554443331 122333499886654431 1 5666666666665
Q ss_pred HHHHHHHhchhhh-ccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHH
Q psy5549 230 AIFRKLVETKKKW-EHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLL 308 (331)
Q Consensus 230 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (331)
.++...-++-.+. ....+..++....+..+..+.+..+.-+.|.-- ++. +..+ ... .+.++..++
T Consensus 487 ~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fg----i~s-~~~~--~~~-------v~~YlFti~ 552 (610)
T KOG4193|consen 487 VMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFG----IFS-WLPG--TSV-------VFAYLFTIF 552 (610)
T ss_pred HHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----HHH-Hhcc--cch-------HHHHHHHHH
Confidence 4443332222211 122222222333366777778888888888322 222 2221 122 266677777
Q ss_pred HhhhccccceeheeeccccccC
Q psy5549 309 ALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 309 ~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
..+..+.=.+.|+.++++.|+.
T Consensus 553 NalQG~fIFi~~cll~~kvr~~ 574 (610)
T KOG4193|consen 553 NALQGVFIFIFHCLLRKKVRKE 574 (610)
T ss_pred HHhhhhHhhHhhhhhhHHHHHH
Confidence 7777778888888899888864
No 31
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.06 E-value=0.0005 Score=57.18 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=108.8
Q ss_pred CchhhHHHHHHHHHHHHHHhHhhhhhhhhccCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc-cC-CccCc
Q psy5549 75 QTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIV-VP-PYRSK 152 (331)
Q Consensus 75 ~~~~~~~i~~lai~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~-~~-p~~~~ 152 (331)
+.+.-.++..+.++++...+.-..+--+. ...|+ ..|.+..-+.......-.....+|+-.=+.... +. +...+
T Consensus 23 N~~~~~li~Wl~l~nl~~~INaiIW~~n~-~~~~~---~wCDI~~kl~~~~~~g~~~a~lcI~r~L~~I~s~r~~~~~~~ 98 (283)
T PF02076_consen 23 NIGTCSLIFWLFLSNLIYFINAIIWRDND-INWWP---VWCDISTKLIIGSSVGIPAASLCIMRRLYRIASARAVSLSRS 98 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CccCc---eeeeehHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCChH
Confidence 34777899999999999888222222222 22332 789998887777776655555555544443222 01 12222
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcccchhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy5549 153 LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVM-VVLACLLPLALLVYYYCAI 231 (331)
Q Consensus 153 ~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~i 231 (331)
.++|+...=..+++...++......+..+...+-.+...|........ ..... .+-..++.++...++- ..
T Consensus 99 ~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~-------~~~~l~~iwp~i~~lia~vYa~-lt 170 (283)
T PF02076_consen 99 EKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSW-------PTIFLFIIWPPIFSLIAAVYAI-LT 170 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCH-------HHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 446777777788888888888777777776656667778876654321 11111 1111222222222222 22
Q ss_pred HHHHHhchhhhcc-ccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5549 232 FRKLVETKKKWEH-SHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIY 283 (331)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~ 283 (331)
.+...|++++.++ -+.++..-+.+|..| +..+.++.+++.+|..+..++..
T Consensus 171 ~~~f~~rr~~f~~~l~~s~s~l~~~Rf~R-L~~la~~~i~~~~P~~i~~~v~n 222 (283)
T PF02076_consen 171 LRRFIRRRKQFRDILSSSNSGLNTSRFFR-LLALALVIILIYLPLSIYYLVSN 222 (283)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332211 111111122334444 67777888889999999998844
No 32
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.93 E-value=0.00035 Score=59.73 Aligned_cols=241 Identities=9% Similarity=0.106 Sum_probs=130.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCc-hhhHHHHHHHHHHHHHHhHh---hhhhhhhc---cC--CCC
Q psy5549 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQT-VTNYFLLNLTAADILFCLSI---PGIMYARV---SP--QWP 109 (331)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~-~~~~~i~~lai~Dll~~~~~---p~~~~~~~---~~--~~~ 109 (331)
.++...+...+..++.++++++....+..+.++.-.++ ...+++.+|..+++=..... ...++..+ .+ +..
T Consensus 16 tS~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~ 95 (328)
T PF02117_consen 16 TSWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSIL 95 (328)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeE
Confidence 34445566677788888888888888888877777775 44556667776665444411 11122222 11 234
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHH-HHHHHHHHhhhhhhheeceeeccc
Q psy5549 110 LGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLG-TWFIACVVFVPVVLWFREQEVLES 188 (331)
Q Consensus 110 ~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~-~w~~~~~~~~~~~~~~~~~~~~~~ 188 (331)
+.+..|........++.....+...++.+||.+|.. .|..++..+......+.+ .-+.++. ......++. +.++-
T Consensus 96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~-~~~~~~~~~~~~g~~l~i~~li~s~~--~~~~i~~~~-p~~gy 171 (328)
T PF02117_consen 96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATF-FPKYYSKKSYIIGIILSILVLILSFI--TGFIIYWDD-PLDGY 171 (328)
T ss_pred eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHh-chhhhhhhhHHHHHHHHHHHHHHHHH--HeeEEEeCC-CCccc
Confidence 678899999999999999999999999999999988 664443222222222222 2222222 222222221 12334
Q ss_pred eeEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhc-cccccchhhhhhhHHHHHHHHHHH
Q psy5549 189 RLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWE-HSHLSSHHARHTRVMRMLCISVCV 267 (331)
Q Consensus 189 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
...|........ ...... .....++.+ +-++....+.+.-+|+.++.+ +.+.+=++++....++.+..+.+.
T Consensus 172 v~~C~~~p~~s~-----~~~~~~-~~~~~~l~i-~~~i~s~~l~~~nkk~e~~~~f~v~~Ry~~~Eni~ST~aI~~i~~~ 244 (328)
T PF02117_consen 172 VPSCFYPPKNSV-----NRFNIF-LIVCFVLTI-FNLIVSIFLMYYNKKKEKKTRFDVNSRYQKRENINSTKAICIISIS 244 (328)
T ss_pred cccccCCChhHH-----HHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456765433221 111111 111112211 122233444444444333221 122222236667778888888888
Q ss_pred HHHhhhhHHHHHHHHHhcCCCCC
Q psy5549 268 ILAMWLPIFLTMILIYIDGRRPT 290 (331)
Q Consensus 268 f~i~~~P~~i~~~~~~~~~~~~~ 290 (331)
..++..-|.....+.....+...
T Consensus 245 Q~i~~~iys~~v~~l~~~~~~i~ 267 (328)
T PF02117_consen 245 QFICMFIYSFGVFILRNFRSSIS 267 (328)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 88888777766555544444333
No 33
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.85 E-value=0.0015 Score=54.93 Aligned_cols=199 Identities=9% Similarity=0.017 Sum_probs=117.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc-cchhhHHHHHHHHHHHHHHHhhhhhhheecee-eccc--e
Q psy5549 114 LCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK-LTPHRVLLLTLGTWFIACVVFVPVVLWFREQE-VLES--R 189 (331)
Q Consensus 114 ~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~-~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~-~~~~--~ 189 (331)
.=++..+........+...-.+.++-|...+. .|.++. ..++-.....-++.+.+++.+.|.+...+... .+.+ -
T Consensus 102 ~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~-~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~f 180 (307)
T PF10322_consen 102 FLKILVFFYYYFNYSSMLFPVLFCLLRLIILY-SPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPF 180 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhee-CccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Confidence 34556677888888888999999999999999 776665 55555566777778888888888666554321 0000 0
Q ss_pred eEEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hhhccccccchhhhhhhHHHHHHHHHHHH
Q psy5549 190 LICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETK-KKWEHSHLSSHHARHTRVMRMLCISVCVI 268 (331)
Q Consensus 190 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 268 (331)
+.=......... +. ............-.+.+++.+..+++++|+.+ +....++.++.+|.|+..+.+++.+.+-+
T Consensus 181 GAI~I~~~~~~~---~~-~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mliP~ 256 (307)
T PF10322_consen 181 GAIIITSTGSWF---NI-RNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLIPY 256 (307)
T ss_pred CEEEEEEEcccc---cc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHHHH
Confidence 000111111111 11 11223344444555677888999999999887 33333444455577888888877777655
Q ss_pred HHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 269 LAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 269 ~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
+. -.++....-..+.... +...+=....-+..++=|.++.+..+-|||+
T Consensus 257 i~-------n~i~~i~~~~~~~~~~------y~~~iRp~~~D~~~~iv~w~FY~THP~Fkkk 305 (307)
T PF10322_consen 257 IT-------NGIISISFLFFPSYSS------YILLIRPFGNDCRTCIVPWYFYLTHPIFKKK 305 (307)
T ss_pred HH-------HHHHHHHHhcCchHHH------HHHHHhhhhhccceeEEEEEeeecChhhcCC
Confidence 44 2222222211111111 2333334455556677788888899988885
No 34
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.73 E-value=0.0033 Score=54.91 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh----HhhhhhhhhccC--------CC
Q psy5549 41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL----SIPGIMYARVSP--------QW 108 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~----~~p~~~~~~~~~--------~~ 108 (331)
........+-.++.+++..-....+.++.+.|..+...+.+....-..-+-..+ ..|...-....+ +|
T Consensus 24 ~~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~ 103 (365)
T PF03125_consen 24 WFYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQW 103 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhh
Confidence 455566666666677676666666777778888776666655544433322222 223222111000 01
Q ss_pred -C------------chhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccch
Q psy5549 109 -P------------LGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTP 155 (331)
Q Consensus 109 -~------------~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~ 155 (331)
. .+...-.+.+++...........+.++++||.+|-. .--.|-.++
T Consensus 104 ~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~-~i~dYEk~~ 162 (365)
T PF03125_consen 104 WTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATY-FIKDYEKKS 162 (365)
T ss_pred hccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcC
Confidence 0 111222333455555566668899999999999998 655555333
No 35
>KOG4564|consensus
Probab=97.69 E-value=0.00064 Score=59.79 Aligned_cols=233 Identities=13% Similarity=0.072 Sum_probs=142.6
Q ss_pred eeeeecCCCCchhhHHHHHHHHHHHHHHh-HhhhhhhhhccCC------------CCchhhhhhhhhhHHHHHHHHHHHH
Q psy5549 66 ITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQ------------WPLGDVLCKIMPYSQFVCGFVLLWT 132 (331)
Q Consensus 66 ~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~~~~~~~------------~~~~~~~C~~~~~~~~~~~~~s~~~ 132 (331)
.++...|++|-..|++=.||-++=++-++ .+........... -..+...|+...++...+..+..+-
T Consensus 167 ~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~W 246 (473)
T KOG4564|consen 167 IIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFW 246 (473)
T ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 34445678888889988999998888888 3332222221111 1256789999999999999988888
Q ss_pred HHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeCCCCCcccchhHHHHHH
Q psy5549 133 LTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVM 212 (331)
Q Consensus 133 ~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 212 (331)
+.+=.+.-+-.+. ... ...+++-+....+.|.+..++..+..+.... .++..|+...+.... ..+
T Consensus 247 mlvEGlYLhtLlv-~~~--~ser~~~~~y~~iGWG~P~v~v~~Wai~r~~----~~d~~CW~~~~~~~~--------~WI 311 (473)
T KOG4564|consen 247 MLVEGLYLHTLLV-VAF--FSERRYFWLYLLIGWGVPAVFVVVWAIVRLY----LEDTGCWDSNDTGHI--------WWI 311 (473)
T ss_pred HHHHHHHHHHhhh-eee--ccCccHHHHHHHHhhCCcHHHhhhHHhHhee----eccccccccCCCcce--------EEE
Confidence 8877766665555 211 1235566677888999998888876665522 233378766553221 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCc
Q psy5549 213 VVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTAD 292 (331)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~ 292 (331)
.-....+++++-.+..+.|++.+-++-+.. +..+. ...+|++|-.++++=+|-+-.+.+ .+..+.....
T Consensus 312 i~gPi~~ai~vNf~flinIvrILv~KLr~~---~~~~~-~~y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~~~~~ 380 (473)
T KOG4564|consen 312 IRGPILLAILVNFIFLINIVRILVTKLRAS---NASET-DQYRKLVKATLVLIPLFGIHYILF-------AFRPDEDTLR 380 (473)
T ss_pred EeccHHHHHHHHHHHHHHHHHHHHHHhcCc---cccch-HHHHHHHHHHHHHHHHcCCeeEEE-------EecCchHHHH
Confidence 111123444555666677777776665532 22222 337777777777766665543221 1121111111
Q ss_pred hhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 293 TEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
. ....+...+..++..+=.++|++.|+|.|.+
T Consensus 381 ~------v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~e 412 (473)
T KOG4564|consen 381 E------VYLYFELFLGSFQGFFVAVLYCFLNGEVQAE 412 (473)
T ss_pred H------HHHHHHHHHHhccchheehheeecCHHHHHH
Confidence 1 3567777888899999999999999998754
No 36
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.58 E-value=0.00043 Score=44.77 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=55.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhh-hHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccc
Q psy5549 250 HHARHTRVMRMLCISVCVILAMWL-PIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFIS 328 (331)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~f~i~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR 328 (331)
++++-+|.+|.+++--++|+++|+ |...-.+-........... ++..++..+..+|+.+|-++|.++.|.-|
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~-------~l~~i~~~~~~~~G~VD~lvf~~~erpw~ 75 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSF-------WLFCIAGFMQPSQGFVDCLVFTLRERPWR 75 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch-------HHHHHHHHHHHccCHHHhhheeeecccCC
Confidence 347788899999999999999999 7655544444332222222 37889999999999999999999988765
No 37
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.55 E-value=0.021 Score=48.68 Aligned_cols=153 Identities=12% Similarity=0.156 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhhhcceeeeeeeecCCCCchhhHHHHHHHHHHHHHHh-Hhhhhhh--hhccC-----------CCCc
Q psy5549 45 AEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMY--ARVSP-----------QWPL 110 (331)
Q Consensus 45 ~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~~~~~~~~i~~lai~Dll~~~-~~p~~~~--~~~~~-----------~~~~ 110 (331)
..-....+.+.+..+.+.+.+......+++-+-+..-+.-++++-.+.++ .+.-.+. ....- +...
T Consensus 10 ~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~ 89 (328)
T PF01534_consen 10 FARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGL 89 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCC
Confidence 33344445555555555555554444333223344455556666666655 2222221 11110 1223
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeecccee
Q psy5549 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRL 190 (331)
Q Consensus 111 ~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (331)
+...|.+...+.+++..++..--+.+++.=+++.. ....+..-.++....-+..|.++.+..+..+.... .+.|+-.+
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~-~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~-VdgD~ltG 167 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAG-LKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRK-VDGDELTG 167 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhh-cccCcchhhhhcchhhhHHhhhhHHHHHHHHHhcc-cccccccc
Confidence 56889999999999999888888899999999888 44443355566777789999999998877666544 33455666
Q ss_pred EEeeeCCCC
Q psy5549 191 ICTIVFPNV 199 (331)
Q Consensus 191 ~C~~~~~~~ 199 (331)
.|.....+.
T Consensus 168 iC~Vg~~~~ 176 (328)
T PF01534_consen 168 ICFVGNQNP 176 (328)
T ss_pred eeEEeCCCH
Confidence 798876554
No 38
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.88 E-value=0.0041 Score=47.83 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhhhcceeeeeeeecCCC--CchhhHHHHHHHHHHHHHHhHhhhhhhhh------ccC-CCCchhhhhh
Q psy5549 46 EICLLSIIFILSMGANLFVLITVMWYPAL--QTVTNYFLLNLTAADILFCLSIPGIMYAR------VSP-QWPLGDVLCK 116 (331)
Q Consensus 46 ~~~~~~~~~~~g~~~N~~vi~~i~~~~~~--~~~~~~~i~~lai~Dll~~~~~p~~~~~~------~~~-~~~~~~~~C~ 116 (331)
....-.++-..+.+.+.+.+..+.++|++ +-.+.+..+ ++...+. .+|..+... +.+ +-..+-..|.
T Consensus 43 ri~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvFa--T~g~fvL--tlP~~lf~~wl~~~l~~~~ep~ytI~vCS 118 (226)
T PF06681_consen 43 RITVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVFA--TFGQFVL--TLPLYLFQTWLVFFLWFGHEPQYTIFVCS 118 (226)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEEe--eHHHHHH--HHHHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence 44455566666777776666666666653 111111111 1111111 333333222 112 2334677899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeC
Q psy5549 117 IMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVF 196 (331)
Q Consensus 117 ~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 196 (331)
+..-....+..+....-+++|++||+.|. . +.|.+.......-.++-+.-++.+... ...+....+..|..-.
T Consensus 119 flk~f~S~t~s~~~vip~aVAIyRy~~VV-~--k~rl~~~f~v~v~~iit~~~~~~a~~~----~~~G~~t~NdiCa~L~ 191 (226)
T PF06681_consen 119 FLKNFTSSTTSCAQVIPVAVAIYRYLIVV-L--KKRLSVWFVVVVHVIITFPFIFYAILN----FPFGEPTPNDICAILR 191 (226)
T ss_pred HHHhHHHHHhhhhccchhhhhhhhhheee-e--cccCCchHHHHHHHHHHHHHHHHHHHh----cccCCCCcCCeeeEEE
Confidence 88877777766666666689999999999 3 333333333222222222222222221 1222456777897654
Q ss_pred CCC
Q psy5549 197 PNV 199 (331)
Q Consensus 197 ~~~ 199 (331)
-.+
T Consensus 192 fs~ 194 (226)
T PF06681_consen 192 FSK 194 (226)
T ss_pred Ecc
Confidence 433
No 39
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.80 E-value=0.028 Score=41.67 Aligned_cols=103 Identities=9% Similarity=0.077 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHhH-hhhhhhhhccCCCC---chhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccC--c
Q psy5549 79 NYFLLNLTAADILFCLS-IPGIMYARVSPQWP---LGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRS--K 152 (331)
Q Consensus 79 ~~~i~~lai~Dll~~~~-~p~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~--~ 152 (331)
-.++.++++++++..+. ..-.......++.. +.+..-+....+..++.....+...+|+++|...+. +|.+. .
T Consensus 4 ~vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~-~P~~~~~~ 82 (153)
T PF03383_consen 4 FVYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVL-FPFGSEIW 82 (153)
T ss_pred EEEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEE-ecCCCccc
Confidence 34566778888777762 22222222222111 112233444567788888889999999999999999 99998 4
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhheec
Q psy5549 153 LTPHRVLLLTLGTWFIACVVFVPVVLWFRE 182 (331)
Q Consensus 153 ~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~ 182 (331)
++.+|.+..+.++.+..+..-+.+.+..-.
T Consensus 83 Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~ 112 (153)
T PF03383_consen 83 FSDKKLWIYCGIIAILSFISLLIPYFSDCY 112 (153)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 999999999998888877776665554433
No 40
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.48 E-value=2 Score=34.45 Aligned_cols=51 Identities=8% Similarity=0.034 Sum_probs=41.7
Q ss_pred CCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhH
Q psy5549 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV 158 (331)
Q Consensus 107 ~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~ 158 (331)
+...++..++.......+....+.+.-..+++||++|.. ...+|..++...
T Consensus 77 dLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~-~A~~YE~~r~~L 127 (236)
T PF02175_consen 77 DLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALK-MAEKYENTRTLL 127 (236)
T ss_pred eEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhccCceee
Confidence 444678899999999999999999999999999999999 666665444433
No 41
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=91.90 E-value=5.1 Score=34.07 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh--ccccccchhhhhhhHHHHHHHHHHHHHH
Q psy5549 211 VMVVLACLLPLALLVYYYCAIFRKLVETKKKW--EHSHLSSHHARHTRVMRMLCISVCVILA 270 (331)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~i 270 (331)
....+.+.+-++.....-....|+.||.++.. .++.+.+...+..|.....++.-+.|.+
T Consensus 187 ~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~ 248 (303)
T PF05296_consen 187 LGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFL 248 (303)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555556666677777766543 3444444446666666665555444443
No 42
>KOG4289|consensus
Probab=73.55 E-value=5.1 Score=40.78 Aligned_cols=176 Identities=10% Similarity=0.022 Sum_probs=87.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeecccee
Q psy5549 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRL 190 (331)
Q Consensus 111 ~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (331)
+...|.+...+..+...+....+.+-++.-|.... .-.. .-..+ ...+.-|.+..++....+. .+ .
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~-e~v~-tg~mr---fy~~vGwgvPa~itglavg------ld---D 2287 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLT-ENVD-TGPMR---FYYLVGWGVPALITGLAVG------LD---D 2287 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccCC-CCcee---EEEEeecchhhheeeeeec------cc---c
Confidence 67899999999999988888888888888888777 3111 11111 1233445554443322221 11 4
Q ss_pred EEeeeCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHH
Q psy5549 191 ICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILA 270 (331)
Q Consensus 191 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i 270 (331)
.|+......- +..+..|+.+.++..........+.+.. ++.+.-.++-..+.++..+++.+....
T Consensus 2288 fCwlS~h~~L-------------iWsfagPigl~i~ms~~~~~lsa~vSc~--~k~~~f~kK~~v~~lq~~fl~llllsa 2352 (2531)
T KOG4289|consen 2288 FCWLSPHDTL-------------IWSFAGPIGLVILMSFYAAALSARVSCH--KKYQVFVKKGNVSVLQHSFLLLLLLSA 2352 (2531)
T ss_pred eeecccchhe-------------eeeecccceeeehHHHHHHHHHHHHhhh--hhheeeeeccchhhhHHHHHHHHHHHH
Confidence 6776543221 1122334333332222222211111111 000001112233456666666666666
Q ss_pred hhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccceeheeeccccccC
Q psy5549 271 MWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNPTLIIRRHHFISYT 330 (331)
Q Consensus 271 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iy~~~~~~fR~~ 330 (331)
.|+-... ...+.... ++.+...+..+...+=-++|+..|.+-|++
T Consensus 2353 twl~~ll--------~vn~~~l~-------fhyl~a~~~~lqg~~Vlll~cVl~~~~raa 2397 (2531)
T KOG4289|consen 2353 TWLLGLL--------AVNPDPLE-------FHYLFASIIGLQGPFVLLLWCVLNIEVRAA 2397 (2531)
T ss_pred HHHHHHH--------hcCCchHH-------HHHHHHHHHHhhhHHHHHHHhhhcHHHHHh
Confidence 6643211 11122221 555666666666666667788888888875
No 43
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=70.08 E-value=66 Score=27.10 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCC-CchhhHHHHHHHHHHHHHHh
Q psy5549 41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPAL-QTVTNYFLLNLTAADILFCL 94 (331)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~-~~~~~~~i~~lai~Dll~~~ 94 (331)
......+.++.++++.|++- .+....|.++. .++...+..-+.++.+.-++
T Consensus 26 ~~~~~La~iy~~v~~~aliQ---l~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~i 77 (281)
T PF06454_consen 26 GLFYALAAIYLLVALVALIQ---LIRIQYRVPKYGWTTQKVFHLLIFLANLVRAI 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhheeEeccccCccHHHHHHHHHHHHHHHHeE
Confidence 34455556666666666554 23333343332 34555554444444443333
No 44
>PF13853 7tm_4: Olfactory receptor
Probab=59.52 E-value=0.055 Score=40.32 Aligned_cols=105 Identities=15% Similarity=0.324 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhhhhhheeceee--ccceeEEee-----eCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5549 160 LLTLGTWFIACVVFVPVVLWFREQEV--LESRLICTI-----VFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIF 232 (331)
Q Consensus 160 ~~i~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~C~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~ 232 (331)
.+....|..+.+...+.......... ..+...|.. ..++... ++.+...........|+.+++++|.+|.
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~---~~~~~~~~~~~~~~~~~~~Il~SY~~Il 81 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSI---NEIVGFVVAIFILLGPLLLILFSYIRIL 81 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhh---hheeeecccceeEEEEeeccccceeEEE
Confidence 45567788888877776654433221 112223331 0111111 3444455555666789999999999999
Q ss_pred HHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHH
Q psy5549 233 RKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFL 277 (331)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i 277 (331)
+.+.|.+.+ +.++|+..+......+..+.+.|...
T Consensus 82 ~avlki~S~----------~~r~KAfsTC~sHL~vv~lfy~~~~~ 116 (144)
T PF13853_consen 82 RAVLKIPSA----------EGRSKAFSTCSSHLTVVSLFYGTVIF 116 (144)
T ss_pred ehhhccccc----------ccccccccccccCceEEEEeeeeeEE
Confidence 988777543 44556666666665555555555443
No 45
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=56.73 E-value=1.2e+02 Score=25.62 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=14.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhchh
Q psy5549 216 ACLLPL-ALLVYYYCAIFRKLVETKK 240 (331)
Q Consensus 216 ~~~~p~-~~~~~~~~~i~~~~~~~~~ 240 (331)
...+|+ ....+.+..+.+.+++..+
T Consensus 189 ~~~~~l~~~~~~~~~wi~~sL~~t~~ 214 (295)
T PF06814_consen 189 FFLLPLCILDLFFIVWIFRSLSKTIR 214 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 3445666777777766433
No 46
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=53.46 E-value=1.3e+02 Score=24.91 Aligned_cols=132 Identities=11% Similarity=0.166 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCccCc---cchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccceeEEeeeC
Q psy5549 120 YSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSK---LTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVF 196 (331)
Q Consensus 120 ~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~---~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 196 (331)
........+--..+.++|++|++--- .|-..+ .+.+.....+........+-............ . ...+..
T Consensus 87 ~~l~i~~~v~~lllsLLAIqRFllyF-fP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~-~--~~~~~~-- 160 (267)
T PF10325_consen 87 FILYIITQVFHLLLSLLAIQRFLLYF-FPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISF-N--NESTEE-- 160 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--cccchh--
Confidence 34444445556678899999999988 655333 45555555554444444444332222211110 0 000000
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHH
Q psy5549 197 PNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCV 267 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (331)
.+. ............. +-+.+....|+-|....||.+.-. ..+..+.++-...+..++.+.
T Consensus 161 --~~~---~~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~l~----s~~~n~pqkyI~~Qt~~i~~~ 221 (267)
T PF10325_consen 161 --IET---FSYIYVIFYIILN-ILLFLSALLYIPIFISIRKLSHLP----SAQKNKPQKYIFWQTILIVIF 221 (267)
T ss_pred --hhH---HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhccC----ccccCcHHHHHHHHHHHHHHH
Confidence 000 1112222222222 334566788999999888776521 112224455555555554433
No 47
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=53.19 E-value=54 Score=20.86 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchh
Q psy5549 209 TVVMVVLACLLPLALL-VYYYCAIFRKLVETKK 240 (331)
Q Consensus 209 ~~~~~~~~~~~p~~~~-~~~~~~i~~~~~~~~~ 240 (331)
..+..++..+.|+.++ .++..++.+.+.+..+
T Consensus 21 ~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~er 53 (74)
T PF15086_consen 21 EFLTTVLLILTPLFIISAVLSWKLAKAIEKEER 53 (74)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566776655 5566666666665554
No 48
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=48.94 E-value=43 Score=23.78 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=18.6
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhcceeeee
Q psy5549 38 NREFEMSAEICLLSIIFILSMGANLFVLIT 67 (331)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~ 67 (331)
..++..++.++++++++.+.++...++..-
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334666777777777666666666555444
No 49
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=48.40 E-value=38 Score=27.39 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=15.0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHH
Q psy5549 110 LGDVLCKIMPYSQFVCGFVLLWTLT 134 (331)
Q Consensus 110 ~~~~~C~~~~~~~~~~~~~s~~~~~ 134 (331)
.++..|....+....+.......+.
T Consensus 51 ~s~~~C~~r~~~~~l~f~l~~~~ll 75 (238)
T PF00003_consen 51 PSDILCTLRRWLFSLGFTLIFSALL 75 (238)
T ss_pred cCCcEEEEeeeeeeeehHhhhhHHH
Confidence 3466799888766555544444443
No 50
>PF15050 SCIMP: SCIMP protein
Probab=46.06 E-value=73 Score=22.58 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q psy5549 211 VMVVLACLLPLALLVYYYCAIFRKLVETKK 240 (331)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~ 240 (331)
++.+...++.+.+-++.|+.-.+.+|+-++
T Consensus 11 iLAVaII~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 11 ILAVAIILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 333334455555566666655555555444
No 51
>KOG1056|consensus
Probab=40.58 E-value=3.9e+02 Score=26.74 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeeeecCCC-------CchhhHHHHHHH
Q psy5549 44 SAEICLLSIIFILSMGANLFVLITVMWYPAL-------QTVTNYFLLNLT 86 (331)
Q Consensus 44 ~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~-------~~~~~~~i~~la 86 (331)
...++..+++.++|++.-+.++.++.|.... |...++++.++.
T Consensus 559 ~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~ 608 (878)
T KOG1056|consen 559 SPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIF 608 (878)
T ss_pred ccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHH
Confidence 3455778888889999888888888876543 233445555544
No 52
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=39.05 E-value=1e+02 Score=21.30 Aligned_cols=13 Identities=0% Similarity=-0.046 Sum_probs=6.8
Q ss_pred ceeeeeeeecCCC
Q psy5549 62 LFVLITVMWYPAL 74 (331)
Q Consensus 62 ~~vi~~i~~~~~~ 74 (331)
++.-++++|.|+.
T Consensus 80 ~IyYFVILRer~~ 92 (101)
T PF06024_consen 80 AIYYFVILRERQK 92 (101)
T ss_pred hheEEEEEecccc
Confidence 3445556565554
No 53
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=38.03 E-value=87 Score=20.62 Aligned_cols=23 Identities=26% Similarity=0.597 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5549 212 MVVLACLLPLALLVYYYCAIFRK 234 (331)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~i~~~ 234 (331)
..+++...|+.+..+.|..=.+.
T Consensus 24 ~s~l~Cc~PlGi~Ai~~s~kv~~ 46 (82)
T PF04505_consen 24 FSTLCCCWPLGIVAIVYSSKVRS 46 (82)
T ss_pred HHHHHHHhhHHHHHheechhhHH
Confidence 33334456877777666654433
No 54
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.76 E-value=64 Score=19.76 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q psy5549 252 ARHTRVMRMLCISVCVILAMW 272 (331)
Q Consensus 252 ~~~~~~~~~~~~~~~~f~i~~ 272 (331)
++.++...++..+++++++-|
T Consensus 33 k~~~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 33 KRMRKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.31 E-value=3.2e+02 Score=27.18 Aligned_cols=77 Identities=8% Similarity=0.194 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhc
Q psy5549 207 AFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYID 285 (331)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~ 285 (331)
.|.+...++...+.++++++.+.....-....+++. ....+--.+..-..-.++.+.+.|+++|+-..+..+....+
T Consensus 411 ~yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~--~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G 487 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRA--DPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYFLVG 487 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555554422211 11111113344455667788888899997766665555443
No 56
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=28.28 E-value=1.2e+02 Score=17.14 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhchh
Q psy5549 227 YYCAIFRKLVETKK 240 (331)
Q Consensus 227 ~~~~i~~~~~~~~~ 240 (331)
.-..|+..+++-+.
T Consensus 21 iGl~IyQkikqIrg 34 (49)
T PF11044_consen 21 IGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHh
Confidence 33455666655544
No 57
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=25.56 E-value=2.9e+02 Score=23.82 Aligned_cols=21 Identities=10% Similarity=0.263 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q psy5549 254 HTRVMRMLCISVCVILAMWLP 274 (331)
Q Consensus 254 ~~~~~~~~~~~~~~f~i~~~P 274 (331)
-.+....+.++.++|.+.|..
T Consensus 57 l~~~~~~~~~~y~~F~~~WGl 77 (318)
T PF12725_consen 57 LLNILFFLSVLYFLFYLLWGL 77 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456666666777777777744
No 58
>KOG2575|consensus
Probab=24.53 E-value=1.6e+02 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHH
Q psy5549 253 RHTRVMRMLCISVCVILAMWLPIFLTM 279 (331)
Q Consensus 253 ~~~~~~~~~~~~~~~f~i~~~P~~i~~ 279 (331)
.-.|..+...+++..|+++|.|+....
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888999999999999986543
No 59
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.11 E-value=2.1e+02 Score=18.54 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5549 216 ACLLPLALLVYYYCAIFRKLV 236 (331)
Q Consensus 216 ~~~~p~~~~~~~~~~i~~~~~ 236 (331)
++++|+++.++.-.-+...++
T Consensus 5 fl~~Pliif~ifVap~wl~lH 25 (75)
T TIGR02976 5 FLAIPLIIFVIFVAPLWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666655544444443333
No 60
>KOG3577|consensus
Probab=23.63 E-value=1.8e+02 Score=27.40 Aligned_cols=90 Identities=10% Similarity=0.120 Sum_probs=59.9
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCCccCccchhhHHHHHHHHHHHHHHHhhhhhhheeceeeccce
Q psy5549 110 LGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESR 189 (331)
Q Consensus 110 ~~~~~C~~~~~~~~~~~~~s~~~~~~isidR~~ai~~~p~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~ 189 (331)
.....|.....+.+++..++.......++..+++.. .+.......++....-...|..+....+..+. ......+...
T Consensus 305 ~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~-~kw~~e~~e~~~~~fh~~aw~~p~~~ti~~l~-~~~v~~~~~~ 382 (556)
T KOG3577|consen 305 LENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAG-LKWGEEAIEAKSSYFHLLAWGLPSVQTILILA-LNKVDGDELS 382 (556)
T ss_pred CCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhc-CcccccccccccceeeehhcCCchHHHHHHHH-HHHhccccee
Confidence 456789999888777777777777788888888876 44444444444455566778777777755555 3333345567
Q ss_pred eEEeeeCCCCCc
Q psy5549 190 LICTIVFPNVPT 201 (331)
Q Consensus 190 ~~C~~~~~~~~~ 201 (331)
..|.....+.+.
T Consensus 383 giC~vG~~~~~~ 394 (556)
T KOG3577|consen 383 GICFVGNSNPDA 394 (556)
T ss_pred EEEecCCCCcch
Confidence 788876665544
No 61
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=23.40 E-value=91 Score=21.38 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhh
Q psy5549 217 CLLPLALLVYYYCAIFRKLVETKKK 241 (331)
Q Consensus 217 ~~~p~~~~~~~~~~i~~~~~~~~~~ 241 (331)
.+..++++.+.|..+.|--|++.++
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~ 36 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKE 36 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 3444456677788888766666553
No 62
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.97 E-value=2.8e+02 Score=19.18 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCCchhhhhhhhhhHHHHHHHhhhccccc
Q psy5549 254 HTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNP 317 (331)
Q Consensus 254 ~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP 317 (331)
+++..+.+..+..+=.-.-+|..+...+..+.+....... .+.....++...-++.|-
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~------~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPF------SWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc------HHHHHHHHHHHHHHHHHH
Confidence 3444555444433333334577777777776555444332 133444455555555543
No 63
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=21.20 E-value=2.1e+02 Score=24.36 Aligned_cols=37 Identities=5% Similarity=-0.033 Sum_probs=18.3
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHhhhcceeeeeeeecCCC
Q psy5549 33 YTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPAL 74 (331)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vi~~i~~~~~~ 74 (331)
|..|..+...-++.++.+..+.++.+ +.+.+.|+|+.
T Consensus 264 C~~D~~~~~vPIaVG~~La~lvlivL-----iaYli~Rrr~~ 300 (306)
T PF01299_consen 264 CSSDDTSDLVPIAVGAALAGLVLIVL-----IAYLIGRRRSR 300 (306)
T ss_pred CCcCCccchHHHHHHHHHHHHHHHHH-----HhheeEecccc
Confidence 44444444444445555555555544 44566665543
No 64
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=21.04 E-value=1.5e+02 Score=15.85 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy5549 44 SAEICLLSIIFILSMGAN 61 (331)
Q Consensus 44 ~~~~~~~~~~~~~g~~~N 61 (331)
+...+++..++++|.+.|
T Consensus 9 y~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 9 YTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhccccCC
Confidence 445567777788888877
No 65
>KOG3500|consensus
Probab=20.87 E-value=1.8e+02 Score=19.13 Aligned_cols=31 Identities=10% Similarity=0.281 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy5549 252 ARHTRVMRMLCISVCVILAMWLPIFLTMILIYI 284 (331)
Q Consensus 252 ~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~ 284 (331)
..++...+.+++++. +.||+-..+..+.+..
T Consensus 28 gP~~~li~~~lvlTA--VCCwlfWli~ylaQlN 58 (84)
T KOG3500|consen 28 GPNRGLIRCMLVLTA--VCCWLFWLIVYLAQLN 58 (84)
T ss_pred CCCcChhHHHHHHHH--HHHHHHHHHHHHHHhC
Confidence 345556666665555 7899887777766654
No 66
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=20.27 E-value=1.6e+02 Score=15.75 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5549 208 FTVVMVVLACLLPLALLVYYYCAI 231 (331)
Q Consensus 208 ~~~~~~~~~~~~p~~~~~~~~~~i 231 (331)
.......++..+|.+..++.|++.
T Consensus 6 lgfiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 6 LGFVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHheec
Confidence 445566677788998888888753
Done!