RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5549
(331 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 125 bits (316), Expect = 3e-34
Identities = 76/256 (29%), Positives = 121/256 (47%), Gaps = 12/256 (4%)
Query: 66 ITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIM-YARVSPQWPLGDVLCKIMPYSQFV 124
+ ++ L+T TN FLLNL AD+LF L++P Y V WP GD LCK++ + V
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 125 CGFVLLWTLTLISMDRYFCIVVPP-YRSKLTPHRVLLLTLGTWFIACVV-FVPVVLWFRE 182
G+ + LT IS+DRY IV P YR TP R +L L W +A ++ P++ +
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
Query: 183 QEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKW 242
+ C I FP T +T++ +L +LPL +++ Y I R L + +
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRS---YTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSG 177
Query: 243 EHSHLSSHHAR-HTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHH 301
+ + + +ML + V V + WLP + ++L + + + L
Sbjct: 178 ASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCP-----LSIWRLLPTA 232
Query: 302 FLWPLLLALANTVVNP 317
L L LA N+ +NP
Sbjct: 233 LLITLWLAYVNSCLNP 248
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 91.8 bits (228), Expect = 5e-21
Identities = 57/236 (24%), Positives = 118/236 (50%), Gaps = 14/236 (5%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
I + S IF + N+ V I V+ ++T + +LLNL +D+LF +++P +Y +
Sbjct: 44 IVVYSTIFFFGLVGNIIV-IYVLTKTKIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILF 102
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGT 165
QW G+ CKI+ ++ + + +T++S+DRY IV P +K+ T +++L
Sbjct: 103 QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVI 162
Query: 166 WFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLV 225
W I+ + P++ + ++ E+ + C +F N T++ + ++ L+PL +L+
Sbjct: 163 WIISIIETTPILFVYTTKKDHETLICC--MFYNNKTMNWKLFINFEINIIGMLIPLTILL 220
Query: 226 YYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMIL 281
Y Y I L K ++ + ++++ I V + + WLP +++ +
Sbjct: 221 YCYSKILITLKGINKS----------KKNKKAIKLVLIIVILFVIFWLPFNVSVFV 266
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 82.8 bits (204), Expect = 1e-17
Identities = 55/242 (22%), Positives = 115/242 (47%), Gaps = 25/242 (10%)
Query: 52 IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLG 111
IIFIL + N + I +++ ++T+T+ ++ NL +D++F + P I+Y QW G
Sbjct: 107 IIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFD-QWIFG 164
Query: 112 DVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRV-LLLTLGTWFIAC 170
D +CK++ S ++ F ++ +TL+S+DRYF I+ P K + ++L + +W ++
Sbjct: 165 DFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSL 224
Query: 171 VVFVPVVLWFREQEVLESR---------LICTIVFPNVPT--VSVSTAFTVVMVVLACLL 219
++ P F ++ S CT++ N + + +L +
Sbjct: 225 IITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFI 284
Query: 220 PLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTM 279
P+ + + Y I KL + KK ++ T+ + ++ I + L W+P+ + +
Sbjct: 285 PIIIFAFCYIKIILKLKQLKK-----------SKKTKSIIIVSIIIICSLICWIPLNIVI 333
Query: 280 IL 281
+
Sbjct: 334 LF 335
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 52.2 bits (125), Expect = 1e-07
Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
I ++FI + N+ V I V+ V + +L N+ +D++ S P I++ ++
Sbjct: 32 IVFYILLFIFGLIGNVLV-IAVLIVKRFMFVVDVYLFNIAMSDLMLVFSFPFIIHNDLN- 89
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTW 166
+W G+ +CK++ FV F ++ +TLIS+DRY +V + +LL++ W
Sbjct: 90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAW 149
Query: 167 FIACVVFVPVVLWFREQEVLESRLICTIVFPNV-PTVSVSTAFTVVMVVLACLLPLALLV 225
+ ++ +P ++ + V + + +F + S S F + + ++PL +L+
Sbjct: 150 VCSVILSMPAMVLYY---VDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILI 206
Query: 226 YYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLP 274
Y Y I L K K TR ++++ V + W+P
Sbjct: 207 YCYSKILYTLKNCKNK-----------NKTRSIKIILTVVTFTVVFWVP 244
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 46.0 bits (109), Expect = 2e-05
Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 30/249 (12%)
Query: 45 AEICLLSIIFILSMGANLFVLITVMWYPALQTVTN--YFLLNLTAADILFCLSIPGIMYA 102
E + +I + NL VL+T + + + ++ NL A++L +P IM
Sbjct: 34 TETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIM-- 91
Query: 103 RVSPQWPLGDVL--CKIMP---YSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHR 157
+S Q L + CK Y+ GF T+ LI+ DRY I
Sbjct: 92 -LSNQGLLSGSVAGCKFASLLYYASCTVGFA---TVALIAADRYRVIHQRTRARSSAYRS 147
Query: 158 VLLLTLGTWFIACV------VFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVV 211
+ TWF + + V+ VV C I F +V + F V+
Sbjct: 148 TYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVL 207
Query: 212 MVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAM 271
+ ++ + P+ ++ ++Y +R L K + +R + +CI + L +
Sbjct: 208 LTLVWGIAPVVMMTWFYTFFYRTLKRASYK-----------KRSRTLTFVCILLLSFLCL 256
Query: 272 WLPIFLTMI 280
P MI
Sbjct: 257 QTPFVAIMI 265
>gnl|CDD|220689 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 33.3 bits (77), Expect = 0.14
Identities = 34/179 (18%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 122 QFVCGFVLLWTLTLISM-----DRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPV 176
QF G L L +S+ +RY + +R RVL L + IA + +P+
Sbjct: 88 QFYIGVTSL-ALVGVSIILLFENRYSILFTNKFRITWKKTRVLYLIF-NYIIALLFLIPI 145
Query: 177 VLWFREQEVLESRL------ICTIVFPNVPTVSVSTAFTVVM--VVLACLLPLALLVYYY 228
L +QE + ++ + F P ++T T + +V+ L+ + ++++
Sbjct: 146 YLNIPDQEEAKLKVLKKLPCLPPEFFDEPPVFVLATDSTYFLISIVILILILIIQILFFV 205
Query: 229 CAIFRKLVETKKKWEHSHLSSHHAR-HTRVMRMLCISVCV-ILAMWLPIFLTMILIYID 285
L ++ K LS + + + L I V + ++ + +P+ + I
Sbjct: 206 FLTIYYLFKSLKS----SLSKKTRKLQKKFLIALIIQVSIPLIVILIPLIYFLYSIIFG 260
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 30.3 bits (69), Expect = 1.4
Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 132 TLTLISMDRYFCIVVP--PYRSKLTPHRVLLLTLGTWF----IACVVFVPVVLWFREQEV 185
++ +S +RY I P R+ + L W I+ VV +++ +E
Sbjct: 92 GISFLSTNRYLAICFPISRLTKIWQSARLWKIILIYWLPGLLISLVVLKNTDIYYDNEEN 151
Query: 186 LESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHS 245
+ V + + T ++ V + C+ + Y A+F + +K +
Sbjct: 152 M-------PVVADKDVIQRFTLIALIFVFVTCIYCIIA----YGALFFVI----RKKFNK 196
Query: 246 HLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRS 299
+ + R +R L V +++ +L I + IL + D F+LR+
Sbjct: 197 NSQTKSKSLKREVR-LAFQVFILVLAFLIILIFYILSNYFSQTQNTDPIFYLRA 249
>gnl|CDD|226393 COG3876, COG3876, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 409
Score = 30.5 bits (69), Expect = 1.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 148 PYRSKLTPHRVLLLTLGTWFIAC-VVFVPVVLWFREQEVLESRLICTIVFPNVPTV 202
PY +TP + LL + I V VP+ W R + ++ LI PN+P V
Sbjct: 192 PYCYGMTPGELALLFNKEFAINADVTVVPMKGWKRSMDFDDTGLIWVPPSPNMPDV 247
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 29.0 bits (66), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 185 VLESRLICTIVFPN 198
VLE R I T+VFP+
Sbjct: 69 VLEGRDIGTVVFPD 82
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srd is part of the
larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 29.8 bits (68), Expect = 1.8
Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 44/269 (16%)
Query: 51 SIIFILSMGANLFVLITVMWY--PALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
I FIL + NL +L +++ +L+T LLN I+ C+ +
Sbjct: 6 PIFFILGLILNLLLLYLIIFKSPKSLRTYR-ILLLNTALTQIISCILAFFTQQRIIPNGV 64
Query: 109 PL-----------GDVLCKIMPYSQFVCGFVL--LWTLTLISMDRYFCIVVPPYRSKLTP 155
L G C + F+L W+L L RY+ + + K
Sbjct: 65 SLALISYGPCKYFGPWFCYSG--YSLLLHFLLHSGWSLLLTFYYRYYILKHVDPKRK--- 119
Query: 156 HRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPN-----------VPTVSV 204
L+L +I + + +V++ + L + PN S
Sbjct: 120 --KLILIFFLHYIPSLSQLLIVIFLVPTDFLPVEAETKELHPNYNLTDYTVTGFSDLQSF 177
Query: 205 STAFTVVMVVLACLLPLALLVYYYCAIF---RKLVETKKKWEHSHLSSHHARHTRVMRML 261
+++ + I RK+++ + + A+H ++++ L
Sbjct: 178 PALINTLIMTIPV-------FPIPIIILILRRKILKLLNSLSSNMSPTTKAQHRQLIKGL 230
Query: 262 CISVCVILAMWLPIFLTMILIYIDGRRPT 290
I + L ++PI +L + G
Sbjct: 231 TIQALLPLFFYIPIVTLYLLSQLTGTEIL 259
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 29.2 bits (65), Expect = 3.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 32 FYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLN 84
F+ FGN E M A +CL + I + N ++TV YP+ + T + LN
Sbjct: 640 FFLSFGNSESAMIALLCLFGGLSIAAW--NALDVLTVELYPSDKRATAFGFLN 690
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.144 0.481
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,335,765
Number of extensions: 1694152
Number of successful extensions: 3234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3195
Number of HSP's successfully gapped: 97
Length of query: 331
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 234
Effective length of database: 6,635,264
Effective search space: 1552651776
Effective search space used: 1552651776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (26.5 bits)