RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5549
(331 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 170 bits (432), Expect = 3e-50
Identities = 63/292 (21%), Positives = 128/292 (43%), Gaps = 8/292 (2%)
Query: 28 YFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTA 87
+ +F +++ ++I + S+ N+ V+ ++ + ++TVTNYFL+NL
Sbjct: 17 TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAF 76
Query: 88 ADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVV 146
A+ + V +W G CK + F ++++T ++ DRY I+
Sbjct: 77 AEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIH 136
Query: 147 PPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVST 206
P + +L+ ++ W +A ++ P + E + SR++C I +P P
Sbjct: 137 -PLQPRLSATATKVVICVIWVLALLLAFPQGY-YSTTETMPSRVVCMIEWPEHPNKIYEK 194
Query: 207 AFTVVMVVLACLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHAR-HTRVMRMLCISV 265
+ + + VL LPL ++ Y Y + L ++ + S +V++M+ + V
Sbjct: 195 VYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVV 254
Query: 266 CVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
C WLP + +L YI+ + +L + LA+++T+ NP
Sbjct: 255 CTFAICWLPFHIFFLLPYINPDLYLKKFIQQV----YLAIMWLAMSSTMYNP 302
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 161 bits (408), Expect = 4e-46
Identities = 55/268 (20%), Positives = 112/268 (41%), Gaps = 11/268 (4%)
Query: 51 SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110
+ + + N V+ ++ + ++T TN ++ NL AD L L++P + WP
Sbjct: 133 LAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPF 192
Query: 111 GDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKL-TPHRVLLLTLGTWFIA 169
G+ LCK + + F +TLT +S+DRY I P + T + + + W +A
Sbjct: 193 GNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALA 252
Query: 170 CVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYYYC 229
VV VPV + +V + + C + P P F + + + + ++P+ ++ Y
Sbjct: 253 SVVGVPVAI-MGSAQVEDEEIECLVEIPT-PQDYWGPVFAICIFLFSFIVPVLVISVCYS 310
Query: 230 AIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRP 289
+ R+L + R+ R++ + V V + W P+ + ++ + +
Sbjct: 311 LMIRRLRGVRLLSGSRE---KDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPS 367
Query: 290 TADTEFFLRSHHFLWPLLLALANTVVNP 317
+ + L N+ +NP
Sbjct: 368 SETAVAI-----LRFCTALGYVNSCLNP 390
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 150 bits (380), Expect = 8e-43
Identities = 52/271 (19%), Positives = 102/271 (37%), Gaps = 10/271 (3%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
+ ++ +L N L + + L+T NY LLNL AD+ +Y +
Sbjct: 43 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 102
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTW 166
+ G C + + + G + LW+L +++++RY + P + + ++ TW
Sbjct: 103 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW 162
Query: 167 FIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVY 226
+A P ++ + + C I + + + +F + M V+ ++PL ++ +
Sbjct: 163 VMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFF 222
Query: 227 YYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDG 286
Y + + E + + S + V RM+ I V L WLP I+
Sbjct: 223 CYGQLVFTVKEAAAQQQESA--TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ 280
Query: 287 RRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
P A + V NP
Sbjct: 281 GSD-------FGPIFMTIPAFFAKTSAVYNP 304
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 136 bits (344), Expect = 8e-37
Identities = 49/246 (19%), Positives = 104/246 (42%), Gaps = 17/246 (6%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
L SI+ ++ + N V+ ++ Y ++T TN ++ NL AD L ++P + W
Sbjct: 23 LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTW 82
Query: 109 PLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGTWF 167
P G++LCKI+ + F ++TL +S+DRY + P TP ++ + W
Sbjct: 83 PFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWI 142
Query: 168 IACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVYY 227
++ + +PV+ + + + CT+ F + PT + + + A ++P+ ++
Sbjct: 143 LSSAIGLPVMF-MATTKYRQGSIDCTLTFSH-PTWYWENLLKICVFIFAFIMPVLIITVC 200
Query: 228 YCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGR 287
Y + +L S + L I + T+ + ++ +
Sbjct: 201 YGLMILRL--------KSVRNIFEMLRIDEGLRLKIYKN-----TEG-YYTIGIGHLLTK 246
Query: 288 RPTADT 293
P+ +
Sbjct: 247 SPSLNA 252
Score = 27.3 bits (60), Expect = 8.2
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 245 SHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLW 304
R+ RM+ + V V + W PI + +I+ + T + +
Sbjct: 369 WDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVS-----WHF 423
Query: 305 PLLLALANTVVNPTL 319
+ L N+ +NP L
Sbjct: 424 CIALGYTNSCLNPVL 438
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 133 bits (337), Expect = 7e-36
Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 32/288 (11%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL--SIPGIMYARVS 105
+ I I+ G N V+ +LQT N F++NL +D F L P + +
Sbjct: 39 IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL 98
Query: 106 PQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
+W G CK+ + + GF+ + T+ +IS+DRY I P K++ R ++ +
Sbjct: 99 KKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIF 158
Query: 165 TWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALL 224
W + + + + + + C+ + + + + S + M +L P+ ++
Sbjct: 159 VWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRS--NILCMFILGFFGPILII 216
Query: 225 VYYYCAIF-------RKLVETKKKWEHSHLSSHHA---RHTRVMRMLCISVCVILAMWLP 274
+ Y I +++ K+ L A R+ ++ + V L W P
Sbjct: 217 FFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSP 276
Query: 275 IFLTMILIYIDGRRPTADTEFFLRSHHF-----LWPLLLALANTVVNP 317
+ +L F P++ A A+ + NP
Sbjct: 277 YAVVALLA------------QFGPLEWVTPYAAQLPVMFAKASAIHNP 312
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 129 bits (326), Expect = 5e-34
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 18/248 (7%)
Query: 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP 97
N F + SIIF+ + N V++ + + L+++T+ + L+L+ AD+LF +++P
Sbjct: 43 NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLP 102
Query: 98 GIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPH 156
V+ W G+ LCK + V + +W L IS+DRY IV +
Sbjct: 103 FWAVDAVA-NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLL 161
Query: 157 RVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLA 216
++ +G W A ++ +P + F + R IC +PN F +++
Sbjct: 162 AEKVVYVGVWIPALLLTIPDFI-FANVSEADDRYICDRFYPN---DLWVVVFQFQHIMVG 217
Query: 217 CLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIF 276
+LP +++ YC I KL R +R+ I +
Sbjct: 218 LILPGIVILSCYCIIISKL------SHSGSNIFEMLRIDEGLRL------KIYKDTEGYY 265
Query: 277 LTMILIYI 284
I +
Sbjct: 266 TIGIGHLL 273
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 127 bits (320), Expect = 3e-33
Identities = 58/296 (19%), Positives = 121/296 (40%), Gaps = 36/296 (12%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ +P ++
Sbjct: 187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 246
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGT 165
W G+ C+ +C + TL +I++DRYF I P Y+S LT ++ ++ L
Sbjct: 247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 306
Query: 166 WFIACVV-FVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALL 224
W ++ + F+P+ + + I + A+ + +++ +PL ++
Sbjct: 307 WIVSGLTSFLPIQMHWYRAT--HQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM 364
Query: 225 VYYYCAIF-------RKLVETKKKWEHS----------------HLSSHHARHTRVMRML 261
V+ Y +F +K+ +++ ++ S + + ++ L
Sbjct: 365 VFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 424
Query: 262 CISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
I + WLP F+ I+ I + W + N+ NP
Sbjct: 425 GIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYIL-----LNW---IGYVNSGFNP 472
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 122 bits (308), Expect = 1e-32
Identities = 62/277 (22%), Positives = 122/277 (44%), Gaps = 17/277 (6%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
L++++ +L + N+ V+ + LQT+TN F+ +L AD++ L +P V
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLGT 165
W G LC++ +C + TL +I++DRY I P Y+S +T R ++
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV 135
Query: 166 WFIACVV-FVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALL 224
W I+ +V F+P+++ + E + + + P + A+ + +++ +PL ++
Sbjct: 136 WAISALVSFLPIMMHWWRDE--DPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM 193
Query: 225 VYYYCAIFRKLVETKK----KWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMI 280
++ ++R+ E + + R + ++ L I + V WLP FL I
Sbjct: 194 IFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNI 253
Query: 281 LIYIDGRRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
+ + F W L AN+ +NP
Sbjct: 254 VNVFNRDLVPDWLFVA-----FNW---LGYANSAMNP 282
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 115 bits (290), Expect = 2e-29
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 10/214 (4%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
+ + + ++++ N+ V++++ LQTV NYFL +L AD++ S+ V
Sbjct: 27 VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86
Query: 106 PQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
WPLG V+C + +V + L +IS DRYFC+ P Y K T ++
Sbjct: 87 GYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAA 146
Query: 165 TWFIACVVFVPVVLWFREQEVLESRL--ICTIVFPNVPTVSVSTAFTVVMVVLACLLPLA 222
W ++ +++ P +L+++ + + C I F + A T + A LP+
Sbjct: 147 AWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNA------AVTFGTAIAAFYLPVI 200
Query: 223 LLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTR 256
++ Y I R +E +
Sbjct: 201 IMTVLYWHISRASKSRINIFEMLRIDEGLRLKIY 234
Score = 27.4 bits (60), Expect = 8.5
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 232 FRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMIL 281
K V T + +R +V R + + + W P + +++
Sbjct: 361 RAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLI 410
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 115 bits (288), Expect = 6e-29
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 10/218 (4%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
I + I +L++ N+ V V LQ VTNYF+++L AADI L+IP +S
Sbjct: 25 ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITIS 82
Query: 106 PQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
+ C + V +++L I++DRY I +P Y +T R +
Sbjct: 83 TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 142
Query: 165 TWFIACVV-FVPVVLWFREQEVLESRLICTIVFPNVPTV----SVSTAFTVVMVVLAC-L 218
W ++ + P++ W + E + V + V AC L
Sbjct: 143 CWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL 202
Query: 219 LPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTR 256
+PL L++ Y IF +E +
Sbjct: 203 VPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIY 240
Score = 31.6 bits (71), Expect = 0.39
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 233 RKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLT-MILIYIDGRRPTA 291
++++ T + S + + L I V + WLP+ + +
Sbjct: 369 KRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP 428
Query: 292 DTEFFLRSHHFLWPLLLALANTVVNP 317
+L + L+ N+VVNP
Sbjct: 429 LWLMYL----AIV---LSHTNSVVNP 447
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 113 bits (283), Expect = 2e-28
Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 10/214 (4%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
+ +LS I ++++G NL VL V L TV N ++++L+ AD++ + +P + +
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
Query: 106 PQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
+W LG LC +V ++++ ++ +DRY + P Y T R LG
Sbjct: 72 SKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILG 131
Query: 165 TWFIACVVFVPVVLW--FREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLA 222
WF++ + +P++ W F +Q + C F +V F V+ ++ LP
Sbjct: 132 AWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVT------WFKVMTAIINFYLPTL 185
Query: 223 LLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTR 256
L++++Y I++ + + +E +
Sbjct: 186 LMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIY 219
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 112 bits (281), Expect = 6e-28
Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ +P +
Sbjct: 45 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 104
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLL-----WTLTLISMDRYFCIVVP-PYRSKLTPHRVLL 160
W G+ C+ + VL TL +I++DRYF I P Y+S LT ++ +
Sbjct: 105 MWTFGNFWCEF-----WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARV 159
Query: 161 LTLGTWFIACVV-FVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLL 219
+ L W ++ + F+P+ + + I + A+ + +++ +
Sbjct: 160 IILMVWIVSGLTSFLPIQMHWYRAT--HQEAINCYAEETCCDFFTNQAYAIASSIVSFYV 217
Query: 220 PLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRM 260
PL ++V+ Y +F++ +E +
Sbjct: 218 PLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTE 258
Score = 30.4 bits (68), Expect = 0.96
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 245 SHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLW 304
+ + ++ L I + WLP F+ I+ I + W
Sbjct: 394 WDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYIL-----LNW 448
Query: 305 PLLLALANTVVNP 317
+ N+ NP
Sbjct: 449 ---IGYVNSGFNP 458
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 110 bits (275), Expect = 4e-27
Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 18/217 (8%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIP-GIMYARVSP 106
+ + + N V + V+ ALQT TNY +++L AD+L L +P +
Sbjct: 44 SYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG 103
Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP----PYRSKLTPHRVLLLT 162
W + C + + +W L IS+DRY +V+P + + RV L+
Sbjct: 104 VWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMI 163
Query: 163 LGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLA 222
W +A V P++ F +C+I P+ S +F LP
Sbjct: 164 TAVWVLAFAVSCPLLFGFNTTGDPT---VCSISNPDFVIYSSVVSF---------YLPFG 211
Query: 223 LLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMR 259
+ V Y I+ L + ++K L ++ +
Sbjct: 212 VTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYK 248
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 109 bits (274), Expect = 6e-27
Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 6/231 (2%)
Query: 37 GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSI 96
++E + + +I + N+FVL+T+ YF+ NL +D+L ++
Sbjct: 57 ADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAY 116
Query: 97 PGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPH 156
+ + + L + S FV +++L I+++RY ++ +
Sbjct: 117 TANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNF 176
Query: 157 RVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLA 216
R+ LL W I+ ++ ++ + L S ++ + +T FT++++ +
Sbjct: 177 RLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIV 236
Query: 217 CLLPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCV 267
L ++ R + L + T + I +
Sbjct: 237 ILY------CRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 281
Score = 36.4 bits (83), Expect = 0.010
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 233 RKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTAD 292
++++ T + +S + + +++ + I + V +A W P+F+ ++L
Sbjct: 395 KRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGC---KVKT 451
Query: 293 TEFFLRSHHFLWPLLLALANTVVNP 317
+ R+ +FL LA+ N+ NP
Sbjct: 452 CDILFRAEYFLV---LAVLNSGTNP 473
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 108 bits (272), Expect = 7e-27
Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 10/221 (4%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
I + I +L++ N+ V V LQ VTNYF+++L AADI L+IP +S
Sbjct: 35 ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITIS 92
Query: 106 PQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVP-PYRSKLTPHRVLLLTLG 164
+ C + V +++L I++DRY I +P Y +T R +
Sbjct: 93 TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAI 152
Query: 165 TWFIACVV-FVPVVLWFREQEVLESRLICTIVFPNVPT-VSVSTAFTVVMVVLACL---- 218
W ++ + P++ W + E + + MV
Sbjct: 153 CWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL 212
Query: 219 LPLALLVYYYCAIFRKLVETKKKWEHSHLSSHHARHTRVMR 259
+PL L++ Y IF E + + +
Sbjct: 213 VPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKA 253
Score = 27.7 bits (61), Expect = 6.1
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 233 RKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGRRPTAD 292
+ + S + + L I V + WLP+ + + A
Sbjct: 328 KTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP 387
Query: 293 TEFFLRSHHFLWPLLLALANTVVNP 317
+ + L+ N+VVNP
Sbjct: 388 LWLM---YLAIV---LSHTNSVVNP 406
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 28.2 bits (63), Expect = 0.31
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 130 LWTLTLISMDRYFCIVVP-PYRSKLTPHR 157
+ L IS+DRY+ I Y K TP R
Sbjct: 4 IVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.46
Identities = 36/198 (18%), Positives = 52/198 (26%), Gaps = 64/198 (32%)
Query: 31 TFYTEF---GNRE--FEMSAEICLL-----SII--FILSMGANLFVLITVMWYPALQTVT 78
F GN + FE E+ L ++ I L LI
Sbjct: 155 QLVAIFGGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELI-----RTTLDAE 206
Query: 79 NYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISM 138
F L +IL L P P D L I P S L + +I +
Sbjct: 207 KVFTQGL---NILEWLENPS--------NTPDKDYLLSI-PIS-----CPL---IGVIQL 246
Query: 139 DRY--FCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVL-----W--FREQ--EVLE 187
Y + TP + G + + V + W F + +
Sbjct: 247 AHYVVTAKL-----LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 188 ------SRLICTIVFPNV 199
R C +PN
Sbjct: 302 VLFFIGVR--CYEAYPNT 317
Score = 28.9 bits (64), Expect = 2.8
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 RVLLLTLGTWFIACVVFVPVVLWFREQEVLES 188
R L L+ G+ + V+ VP +F ++ E
Sbjct: 7 RPLTLSHGS--LEHVLLVPTASFFIASQLQEQ 36
Score = 28.5 bits (63), Expect = 4.5
Identities = 51/288 (17%), Positives = 81/288 (28%), Gaps = 100/288 (34%)
Query: 83 LNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYF 142
L L+ + L +P + S Q L + KI+P T + D
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIAS-Q--LQEQFNKILPEP----------TEGFAADDE-- 53
Query: 143 CIVVPPYRSKLTPHRVL-LLT--LGTWFIACVV-------FVPV---VLWFREQEVLESR 189
P L+ LG +++ +V F V L E LE
Sbjct: 54 ------------PTTPAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 190 LICTIV--FPNVPTVSVSTAFTVVMV-VLACLL---PL------ALL---------VYYY 228
I + ++ ++ + A ++ P AL +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-- 157
Query: 229 CAIF-------------RKLVETKKKW------EHSHLSSHHARHTRVMRMLCISVCVIL 269
AIF R L +T + S R T + IL
Sbjct: 158 -AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 270 AMWLPIFLTMILIYIDGRRPTADTEFFLRSHHFLWPL--LLALANTVV 315
WL + T D + +L S PL ++ LA+ VV
Sbjct: 217 E-WL-----------ENPSNTPDKD-YLLSIPISCPLIGVIQLAHYVV 251
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.59
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 182 EQEV--LESRLICTIVFPN-VPTVSVSTAFTV 210
+Q + L++ L + + P +++ T+
Sbjct: 19 KQALKKLQASL--KLYADDSAPALAIKA--TM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.4
Identities = 41/305 (13%), Positives = 78/305 (25%), Gaps = 78/305 (25%)
Query: 32 FYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAAD-- 89
F+ N + +L M L I W +N L +
Sbjct: 185 FWLNLKNCNSPET----------VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 90 -ILFCLSIPGIMYAR-------VSPQWPLG--DVLCKIMPYSQFVCGFVLLWT-----LT 134
L Y V ++ CKI LL T
Sbjct: 235 RRLLKSK----PYENCLLVLLNVQNAKAWNAFNLSCKI-----------LLTTRFKQVTD 279
Query: 135 LISMDRYFCIVVPPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTI 194
+S I + + LTP V L + + P L + + + +I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDL--PREVLTTNPRRLSI 332
Query: 195 V----------FPNVPTVSVSTAFTVVMVVLACLLPLALLVYYY-CAIFRKLVETKKK-- 241
+ + N V+ T++ L L P + ++F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 242 ---WEHSHLSSHHARHTRVMRML--CISVCVILAMWLPIFLTMILIYIDGRRPTADTEFF 296
W + VM ++ ++ +++ IY++ + +
Sbjct: 393 SLIWFDV-------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---- 441
Query: 297 LRSHH 301
+ H
Sbjct: 442 EYALH 446
Score = 28.7 bits (63), Expect = 3.8
Identities = 48/324 (14%), Positives = 94/324 (29%), Gaps = 106/324 (32%)
Query: 4 TDHESGINTSYVFGIDDKDGWGPRYFFTFYTEF-GNREFEMSAEIC-----LLSIIFILS 57
TD S T+++ P + ++ R ++ E+ LSII
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII---- 333
Query: 58 MGANLFVLITVMW-------YPALQTVTNYFLLNLTAADI--LF-CLSI-P---GIMYAR 103
++ + W L T+ L L A+ +F LS+ P I
Sbjct: 334 -AESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 104 VSPQWP------LGDVLCKIMPYS------------------------------------ 121
+S W + V+ K+ YS
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 122 --QFVCGFVLLWTLTLISMDRYFC------IVVPPYRSKLTPHRVLLLTL---------- 163
F L +D+YF + + ++T R++ L
Sbjct: 452 HYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 164 GTWFIACVVFVPVVLWFR-------EQEVLESRLICTIV-F-PNVPTVSVSTAFTVVMVV 214
T + A + + + + + RL+ I+ F P + + + +T
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT----- 565
Query: 215 LACLLPLALLV---YYYCAIFRKL 235
LL +AL+ + +++
Sbjct: 566 --DLLRIALMAEDEAIFEEAHKQV 587
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN;
1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Length = 283
Score = 27.8 bits (61), Expect = 4.5
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 3/75 (4%)
Query: 98 GIMYA---RVSPQWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLT 154
+ V+P + D+ + P+ L C V P T
Sbjct: 20 ALCKGVMYGVAPAATIVDITHDVAPFDVREGALFLADVPHSFPAHTVICAYVYPETGTAT 79
Query: 155 PHRVLLLTLGTWFIA 169
+ G +
Sbjct: 80 HTIAVRNEKGQLLVG 94
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
juncti cytoplasmic vesicle, membrane, phosphoprotein;
HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Length = 109
Score = 26.3 bits (58), Expect = 6.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 251 HARHTRVMRMLCISVCVILAMWLPIFLTMILIYI 284
+ R +++ I CVIL + I + I
Sbjct: 78 YQSKARRKKIMIIICCVILGI---IIASTIGGIF 108
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Length = 284
Score = 27.4 bits (61), Expect = 6.2
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 147 PPYRSKLTPHRVLLLTLGTWFIACVVFVPVVLWFREQEVLESRLICTIVFPNVPT---VS 203
++ + LL L + I V +PV Q + P V +
Sbjct: 18 LYFQGHMRLLFSALLALLSSIILLFVLLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTT 77
Query: 204 VSTAFTVVMVVLACLLPLALLVYYYCAIFRKLVET 238
A ++ + PLA ++ + +VE
Sbjct: 78 YYAALISTLIAVIFGTPLAYILARKSFPGKSVVEG 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.144 0.481
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,285,422
Number of extensions: 305991
Number of successful extensions: 1114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 41
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.2 bits)