RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5549
         (331 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 81.6 bits (200), Expect = 5e-18
 Identities = 52/271 (19%), Positives = 102/271 (37%), Gaps = 10/271 (3%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
             + ++ +L    N   L   + +  L+T  NY LLNL  AD+          +Y  +  
Sbjct: 42  AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 101

Query: 107 QWPLGDVLCKIMPYSQFVCGFVLLWTLTLISMDRYFCIVVPPYRSKLTPHRVLLLTLGTW 166
            +  G   C +  +   + G + LW+L +++++RY  +  P    +   +  ++    TW
Sbjct: 102 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTW 161

Query: 167 FIACVVFVPVVLWFREQEVLESRLICTIVFPNVPTVSVSTAFTVVMVVLACLLPLALLVY 226
            +A     P ++ +        +  C I +      + + +F + M V+  ++PL ++ +
Sbjct: 162 VMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFF 221

Query: 227 YYCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDG 286
            Y  +   + E   + + S   +       V RM+ I V   L  WLP       I+   
Sbjct: 222 CYGQLVFTVKEAAAQQQESA--TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ 279

Query: 287 RRPTADTEFFLRSHHFLWPLLLALANTVVNP 317
                             P   A  + V NP
Sbjct: 280 GSDFGPI-------FMTIPAFFAKTSAVYNP 303


>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 302

 Score = 25.7 bits (55), Expect = 7.7
 Identities = 11/61 (18%), Positives = 19/61 (31%)

Query: 228 YCAIFRKLVETKKKWEHSHLSSHHARHTRVMRMLCISVCVILAMWLPIFLTMILIYIDGR 287
               F            + L   +  H    R +  S    +A+ +       L++ DGR
Sbjct: 196 TAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHDALVFCDGR 255

Query: 288 R 288
           R
Sbjct: 256 R 256


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.144    0.481 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,295,773
Number of extensions: 58578
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.7 bits)