BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy555
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 36 RLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYK 95
RL+G CSN+ G F + E +F Q EQ+F+W+G +EVE K + K
Sbjct: 271 RLYG--CSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLK 328
Query: 96 SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138
SA +Y++ + +R + + +G E FT F W K
Sbjct: 329 SAKMYLETDPSGRDKR-TPIVIIKQGHEPPTFTGWFLGWDSSK 370
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 78 FLWLGSKCSEVEVKLA-YKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSF 136
++W+G S+ E K A Y ++++ + LR +E E P + + +L GK+ + + +
Sbjct: 207 YIWVGKGASQEEEKGAEYVASVLKCKTLRIQEGEEPEEFWNSLGGKKDYQTSPLLETQAE 266
Query: 137 HKKP 140
P
Sbjct: 267 DHPP 270
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
F CSN+ G F +E DF Q +QVF W+G +E E K A +A
Sbjct: 286 FECSNKTGRFLATE-IPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQE 344
Query: 100 YIQ-HLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
Y++ H ++PE P + + +G E FT F AW
Sbjct: 345 YLKTHPSGRDPETP--IIVVKQGHEPPTFTGWFLAWD 379
>pdb|2LLF|A Chain A, Sixth Gelsolin-like Domain Of Villin In 5 Mm Cacl2
Length = 107
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 40 FRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXNGEQVFLWLGSKCSEVEVKLAYKSALV 99
F CSN+ G F +E DF Q +Q+F W+G +E E + A ++A
Sbjct: 4 FECSNKTGRFLATE-IVDFTQDDLDENDVYLLDTWDQIFFWIGKGANESEKEAAAETAQE 62
Query: 100 YIQ-HLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
Y++ H +++ + P + + +G E FT F AW
Sbjct: 63 YLRSHPGSRDLDTP--IIVVKQGFEPPTFTGWFMAWD 97
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 14 GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
G SY +S +++ ++ RLF CSN G F + E + Q
Sbjct: 206 GGKTSYRTSPRLKDKKMDAHPPRLFA--CSNRIGRFVIEEVPGELMQEDLATDDVMLLDT 263
Query: 74 GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
+QVF+W+G E E A SA YI+ A R R+ +T+ +G E F F
Sbjct: 264 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN---RDRRTPITVVRQGFEPPSFVGWF 320
Query: 132 HAWS 135
W
Sbjct: 321 LGWD 324
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 14 GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
G +Y +S +++ ++ RLF CSN+ G F + E + Q
Sbjct: 208 GGKAAYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGELMQEDLATDDVMLLDT 265
Query: 74 GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
+QVF+W+G E E A SA YI+ A R R+ +T+ +G E F F
Sbjct: 266 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN---RDRRTPITVVKQGFEPPSFVGWF 322
Query: 132 HAWS 135
W
Sbjct: 323 LGWD 326
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 14 GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
G +Y +S +++ ++ RLF CSN+ G F + E + Q
Sbjct: 208 GGKAAYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGELMQEDLATDDVMLLDT 265
Query: 74 GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
+QVF+W+G E E A SA YI+ A R R+ +T+ +G E F F
Sbjct: 266 WDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN---RDRRTPITVVKQGFEPPSFVGWF 322
Query: 132 HAWS 135
W
Sbjct: 323 LGWD 326
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 14 GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
G +Y +S +++ ++ RLF CSN+ G F + E + Q
Sbjct: 646 GGKAAYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGELMQEDLATDDVMLLDT 703
Query: 74 GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
+QVF+W+G E E A SA YI+ R R+ +T+ +G E F F
Sbjct: 704 WDQVFVWVGKDSQEEEKTEALTSAKRYIE---TDPANRDRRTPITVVKQGFEPPSFVGWF 760
Query: 132 HAW 134
W
Sbjct: 761 LGW 763
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 14 GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
G +Y +S +++ ++ RLF CSN+ G F + E +F Q
Sbjct: 593 GGKATYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGEFMQEDLATDDVMLLDT 650
Query: 74 GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
+QVF+W+G + E A SA YI R R+ +T+ +G E F F
Sbjct: 651 WDQVFVWVGKDSQDEEKTEALTSAKRYID---TDPAHRDRRTPITVVKQGFEPPSFVGWF 707
Query: 132 HAW 134
W
Sbjct: 708 LGW 710
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 14 GTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQXXXXXXXXXXXXN 73
G +Y +S +++ ++ RLF CSN+ G F + E +F Q
Sbjct: 595 GGKATYRTSPRLKDKKMDAHPPRLFA--CSNKIGRFVIEEVPGEFMQEDLATDDVMLLDT 652
Query: 74 GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL--KGKESRRFTKCF 131
+QVF+W+G + E A SA YI R R+ +T+ +G E F F
Sbjct: 653 WDQVFVWVGKDSQDEEKTEALTSAKRYID---TDPAHRDRRTPITVVKQGFEPPSFVGWF 709
Query: 132 HAW 134
W
Sbjct: 710 LGW 712
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 85 CSEV--EVKLAYKSALVYIQHLRAKEPERPR 113
C+++ V LAY+ A I HLR + P+R R
Sbjct: 823 CTDIFPSVSLAYEKAESDIMHLRPRNPKRDR 853
>pdb|1RCW|A Chain A, Crystal Structure Of Ct610 From Chlamydia Trachomatis
pdb|1RCW|B Chain B, Crystal Structure Of Ct610 From Chlamydia Trachomatis
pdb|1RCW|C Chain C, Crystal Structure Of Ct610 From Chlamydia Trachomatis
Length = 231
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 18 SYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCT 56
SY S I + + K+ L FGF + YFT E+
Sbjct: 140 SYESQIPRIAREKIRGLTEYFGFSNPEDYAYFTEHEEAD 178
>pdb|2EHW|A Chain A, Conserved Hypothetical Proteim (Tthb059) From Thermo
Thermophilus Hb8
pdb|2EHW|B Chain B, Conserved Hypothetical Proteim (Tthb059) From Thermo
Thermophilus Hb8
pdb|2EHW|C Chain C, Conserved Hypothetical Proteim (Tthb059) From Thermo
Thermophilus Hb8
pdb|2EHW|D Chain D, Conserved Hypothetical Proteim (Tthb059) From Thermo
Thermophilus Hb8
Length = 120
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 93 AYKSALVYIQHLRAKEPERP--RKLFLTLKGKESR 125
A + AL++++ A+EPE P R L L ++ E R
Sbjct: 56 ALREALLHLEERAAQEPEEPYWRGLLLAVEAXEGR 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,754,079
Number of Sequences: 62578
Number of extensions: 118002
Number of successful extensions: 171
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 13
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)