Query psy555
Match_columns 142
No_of_seqs 118 out of 1072
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:23:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443|consensus 100.0 2.2E-31 4.7E-36 229.2 12.9 128 7-140 593-722 (827)
2 KOG0443|consensus 99.9 3.6E-26 7.8E-31 197.1 10.5 127 8-139 225-356 (827)
3 smart00262 GEL Gelsolin homolo 99.9 1.4E-23 3.1E-28 139.9 11.5 88 40-134 3-90 (90)
4 KOG0444|consensus 99.8 7.9E-20 1.7E-24 156.8 7.2 127 7-138 703-836 (1255)
5 PF00626 Gelsolin: Gelsolin re 99.7 5.2E-18 1.1E-22 109.2 6.4 68 57-128 9-76 (76)
6 KOG0445|consensus 99.5 8.6E-15 1.9E-19 125.5 4.5 129 8-139 311-458 (919)
7 KOG0444|consensus 99.3 7.6E-14 1.6E-18 120.4 -2.7 125 9-141 1129-1254(1255)
8 KOG0445|consensus 99.2 7.9E-12 1.7E-16 107.5 5.0 92 31-137 743-836 (919)
9 COG5028 Vesicle coat complex C 97.4 0.00045 9.7E-09 61.3 6.5 69 57-125 737-828 (861)
10 KOG1984|consensus 97.2 0.0021 4.5E-08 57.9 8.7 66 57-126 882-973 (1007)
11 PTZ00395 Sec24-related protein 96.5 0.0031 6.6E-08 59.2 4.2 33 57-89 1435-1467(1560)
12 KOG1985|consensus 96.2 0.0035 7.6E-08 56.1 2.5 31 57-87 764-794 (887)
13 PLN00162 transport protein sec 93.7 0.45 9.8E-06 43.1 8.7 44 34-84 620-663 (761)
14 PF12134 PRP8_domainIV: PRP8 d 50.0 60 0.0013 25.3 5.7 55 65-122 45-109 (231)
15 cd06094 RP_Saci_like RP_Saci_l 37.3 29 0.00063 23.1 2.0 20 61-80 4-23 (89)
16 PF11330 DUF3132: Protein of u 36.5 38 0.00083 22.8 2.5 37 65-101 87-123 (124)
17 smart00686 DM13 Domain present 31.4 76 0.0016 21.7 3.4 15 74-88 30-44 (108)
18 PF05176 ATP-synt_10: ATP10 pr 31.3 1E+02 0.0023 24.2 4.6 37 57-94 209-245 (252)
19 smart00706 TECPR Beta propelle 25.6 75 0.0016 16.5 2.1 21 62-82 14-35 (35)
20 KOG4614|consensus 25.0 1.3E+02 0.0028 23.9 4.0 40 61-101 244-283 (287)
21 COG2823 OsmY Predicted peripla 24.4 1.9E+02 0.0042 21.9 4.8 42 57-99 140-181 (196)
22 PF13540 RCC1_2: Regulator of 24.4 1.1E+02 0.0024 15.5 2.7 15 66-80 9-23 (30)
23 PF01295 Adenylate_cycl: Adeny 23.9 1.2E+02 0.0026 27.1 4.1 31 64-94 527-557 (604)
24 KOG0925|consensus 23.9 2.6E+02 0.0057 24.9 6.0 61 58-133 152-212 (699)
25 PF14593 PH_3: PH domain; PDB: 22.1 2.6E+02 0.0057 18.9 8.1 61 34-99 37-100 (104)
26 PF06124 DUF960: Staphylococca 20.9 2E+02 0.0044 19.1 3.9 36 40-75 40-85 (94)
27 PF14465 NFRKB_winged: NFRKB W 20.2 93 0.002 21.1 2.1 19 74-92 76-94 (100)
No 1
>KOG0443|consensus
Probab=99.97 E-value=2.2e-31 Score=229.17 Aligned_cols=128 Identities=32% Similarity=0.519 Sum_probs=114.4
Q ss_pred eccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCC
Q psy555 7 VAYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKC 85 (142)
Q Consensus 7 ~~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a 85 (142)
-+.||+ ||||.+|+++.+ .++.-..+||| |.|+..+|.|+++|| .+|+|+||+++|+|||||+++||||+|+.+
T Consensus 593 p~~FWe~LGGk~~Y~~sk~--~~~~~~~~PrL--F~Cs~~~g~f~~~EI-~~F~QdDL~tdDi~lLDt~~evfvWvG~~a 667 (827)
T KOG0443|consen 593 PDEFWELLGGKAEYPSSKR--LEEKPERDPRL--FSCSNKTGSFVVEEI-YNFTQDDLMTDDIMLLDTWSEVFVWVGQEA 667 (827)
T ss_pred chhhHHHcCCCCCCCcCcc--ccccCCCCCcE--EEEEecCCcEEEEEe-cCcchhhccccceEEEecCceEEEEecCCC
Confidence 368999 999999999864 22333567899 999999999999999 599999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh-cCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555 86 SEVEVKLAYKSALVYIQHL-RAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP 140 (142)
Q Consensus 86 ~~~ek~~a~~~A~~y~~~~-~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~ 140 (142)
+..||..|+.+|+.|++.. +. ++.+.+||.+|.||+||+.|+.+|.+|+.+++.
T Consensus 668 ~~~eK~~Al~~~~~yl~~~~p~-gr~~~TPI~vV~qG~EPp~Ftg~F~~WD~~kwS 722 (827)
T KOG0443|consen 668 NEKEKEEALTIGQKYLETDLPE-GRDPRTPIYVVKQGHEPPFFTGFFLSWDPSKWS 722 (827)
T ss_pred ChhHHHHHHHHHHHHHhccCcc-cCCCCCceEEecCCCCCChhhccccccCCcccc
Confidence 9999999999999999876 33 444579999999999999999999999999874
No 2
>KOG0443|consensus
Probab=99.93 E-value=3.6e-26 Score=197.11 Aligned_cols=127 Identities=24% Similarity=0.414 Sum_probs=106.7
Q ss_pred ccccc-CcccCc-ccccccccCCCCc-cCcceeeeeEEEccCCCeEEEEeec-CCccCCCCCCcEEEEecC-CeEEEEeC
Q psy555 8 AYCWS-KGTFQS-YASSINKRNQGKV-SNLARLFGFRCSNEKGYFTVSEKCT-DFCQDDLADDDMMILDNG-EQVFLWLG 82 (142)
Q Consensus 8 ~~FW~-lGg~~~-~~~~~~~~~~~~~-~~~~rL~~f~v~~~~g~l~v~ev~~-~~~q~~L~s~~vfILD~g-~~IyvW~G 82 (142)
.+||. +||..+ .+......+++.+ ....+| |+|++++|.+.+.+++. |+++++|++++||||||| .+||||+|
T Consensus 225 ~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kL--YkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~G 302 (827)
T KOG0443|consen 225 GEFWGFVLGFAPALPKKSPDDDDEQANSAAAKL--YKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKG 302 (827)
T ss_pred HHHHHhhcCcCccCCCCCcchhhhhhhccccEE--EEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeC
Confidence 36999 887665 4443322222222 237899 99999999999998864 599999999999999999 79999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555 83 SKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK 139 (142)
Q Consensus 83 ~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~ 139 (142)
+.|+..||+.||..|++|++++. ++++|.|.+|.||.|+..||++|.+|.+...
T Consensus 303 r~as~~ERkaAm~~AeeFlk~k~---yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~ 356 (827)
T KOG0443|consen 303 RQASLDERKAAMSSAEEFLKKKK---YPPNTQVVRVLEGAESAPFKQLFDSWPDKDQ 356 (827)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcc---CCCCceEEEecCCCcchhHHHHHhhCccccc
Confidence 99999999999999999999864 4468999999999999999999999998754
No 3
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.91 E-value=1.4e-23 Score=139.93 Aligned_cols=88 Identities=31% Similarity=0.491 Sum_probs=77.3
Q ss_pred eEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEec
Q psy555 40 FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTL 119 (142)
Q Consensus 40 f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~ 119 (142)
++++.. ..+.+.++ ++.+++|+++||||||++++||||+|++|+..||..|+.+|+.|++..+ .+.++|.++.
T Consensus 3 ~~~~g~-~~~~~~~~--~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~----~~~~~i~~v~ 75 (90)
T smart00262 3 VRVKGK-RNVRVPEV--PFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG----PGPVQVRVVD 75 (90)
T ss_pred EEEeCC-ceEEEEEc--CCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC----CCCceEEEEe
Confidence 556543 35666665 9999999999999999999999999999999999999999999998643 2369999999
Q ss_pred CCCCChhhHhhhcCC
Q psy555 120 KGKESRRFTKCFHAW 134 (142)
Q Consensus 120 eG~Ep~~Fk~~F~~W 134 (142)
||.||..|+..|.+|
T Consensus 76 eg~E~~~F~~~f~~~ 90 (90)
T smart00262 76 EGKEPPEFWSLFGGW 90 (90)
T ss_pred CCCCCHHHHHHhCCC
Confidence 999999999999998
No 4
>KOG0444|consensus
Probab=99.80 E-value=7.9e-20 Score=156.79 Aligned_cols=127 Identities=20% Similarity=0.344 Sum_probs=106.7
Q ss_pred eccccc-CcccCccccc-ccccCCCCcc-CcceeeeeEEEccCCCeEEEEee----cCCccCCCCCCcEEEEecCCeEEE
Q psy555 7 VAYCWS-KGTFQSYASS-INKRNQGKVS-NLARLFGFRCSNEKGYFTVSEKC----TDFCQDDLADDDMMILDNGEQVFL 79 (142)
Q Consensus 7 ~~~FW~-lGg~~~~~~~-~~~~~~~~~~-~~~rL~~f~v~~~~g~l~v~ev~----~~~~q~~L~s~~vfILD~g~~Iyv 79 (142)
..+||+ |||.++.+.. +-...+++|. .+|+| |+|.-..|.+.+.+|- ..+.|+.|+|+.||||||.++||+
T Consensus 703 ~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkL--YkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~ 780 (1255)
T KOG0444|consen 703 PPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKL--YKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFL 780 (1255)
T ss_pred CHHHHHHhCCCCcccccchhhcCCcccCCCCcce--EEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEE
Confidence 368999 9998765443 2223345554 48999 9999889999877762 248999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCC
Q psy555 80 WLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHK 138 (142)
Q Consensus 80 W~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~ 138 (142)
|+|++++.-.|..|.++.++.+.+. +|++.+.|.++.||.|...|++.|.+||+..
T Consensus 781 W~GkKs~RLvraAa~KL~~EL~~M~---dRPdyA~V~R~~EG~E~q~FrsKFagWDev~ 836 (1255)
T KOG0444|consen 781 WIGKKSNRLVRAAAQKLVVELHQMI---DRPDYAQVYRETEGEESQMFRSKFAGWDEVV 836 (1255)
T ss_pred EecccchHHHHHHHHHHHHHHHhhh---cCcchhheeeccCccHHHHHHHhhCCcceee
Confidence 9999999999999999999988875 4446799999999999999999999999864
No 5
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.74 E-value=5.2e-18 Score=109.19 Aligned_cols=68 Identities=29% Similarity=0.434 Sum_probs=61.1
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFT 128 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk 128 (142)
++++++|++++|||||++.+||+|+|++|+..+|..|+..|+++.... +...+.+.++.||.||..|+
T Consensus 9 ~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~----~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 9 PLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEE----RPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp SSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHH----TTTTSEEEEEETTHHHHHHH
T ss_pred CCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhc----CCCCCEEEEecCCCCChHHC
Confidence 999999999999999999999999999999999999999999988221 12358899999999999995
No 6
>KOG0445|consensus
Probab=99.52 E-value=8.6e-15 Score=125.46 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=97.8
Q ss_pred ccccc-CcccCcccccccccCCCCccC----cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeC
Q psy555 8 AYCWS-KGTFQSYASSINKRNQGKVSN----LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLG 82 (142)
Q Consensus 8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~----~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G 82 (142)
.+||. |||..+|.+.....+++.|.. ...+ |++-+++ .+....-...+.-++|++..|.|+|.|++||||.|
T Consensus 311 ~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~i--yr~~dd~-l~p~~~~w~ipk~~~l~p~eVLvFDFGSEvYVW~G 387 (919)
T KOG0445|consen 311 KDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCI--YRLMDDK-LVPDDDYWKIPKCSLLQPKEVLVFDFGSEVYVWHG 387 (919)
T ss_pred HHHHHHhCCccchhhcCCccccchHHHHHHHhhhH--Hhhcccc-cCccccccccccccccCcceEEEEecCceEEEEcC
Confidence 47999 999999988754455555443 4456 8876542 11111111258889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh--------------cCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555 83 SKCSEVEVKLAYKSALVYIQHL--------------RAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK 139 (142)
Q Consensus 83 ~~a~~~ek~~a~~~A~~y~~~~--------------~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~ 139 (142)
+.++...|+.|+++|++..+.. ...+|+.|+-.-.+.||.|+..||+.|.+|++.+.
T Consensus 388 k~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsDWpE~~r 458 (919)
T KOG0445|consen 388 KEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSDWPELKR 458 (919)
T ss_pred ccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhccchHhhh
Confidence 9999999999999999876532 01123457777889999999999999999998654
No 7
>KOG0444|consensus
Probab=99.32 E-value=7.6e-14 Score=120.43 Aligned_cols=125 Identities=54% Similarity=1.022 Sum_probs=106.6
Q ss_pred cccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCH
Q psy555 9 YCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSE 87 (142)
Q Consensus 9 ~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~ 87 (142)
.||. +||+++|-... .+..-.|| |+|+..+|.+.+.|.+.+|.|+||+.++++|||.|..+|.|+|..++.
T Consensus 1129 ~fw~~~g~~k~ye~d~------~~~khtrl--frc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~v~~w~g~~~s~ 1200 (1255)
T KOG0444|consen 1129 EFWKVLGGKKKYETDS------SFVKHTRL--FRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWIGARSSD 1200 (1255)
T ss_pred HHhcccCCCCccchhH------HHHHHHHH--HhccchhhhhhHhHhhhhhhhccchhhhhhhhcccceeeeeecceehh
Confidence 5999 99998886642 33446789 999999999999997779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCCC
Q psy555 88 VEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPP 141 (142)
Q Consensus 88 ~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~~ 141 (142)
.|-+.+...||.|...++.+.+.+......+..|.|+..|...|+.|..-+.|.
T Consensus 1201 ie~Kls~~a~Qvy~~~mr~k~~e~pr~~~l~~~gre~~~F~~cfhaws~~~~~~ 1254 (1255)
T KOG0444|consen 1201 IEAKLSYQAAQVYHASMRMKANEKPRKFMLAVRGRESCRFRKCFHAWSKMKEPM 1254 (1255)
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHHhcchhhhhHHHHHHHHHhhccc
Confidence 999999999999998765544333455667889999999999999998877663
No 8
>KOG0445|consensus
Probab=99.24 E-value=7.9e-12 Score=107.54 Aligned_cols=92 Identities=26% Similarity=0.463 Sum_probs=72.4
Q ss_pred ccCcceeeeeEEEccC-CCeEEEE-eecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCC
Q psy555 31 VSNLARLFGFRCSNEK-GYFTVSE-KCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKE 108 (142)
Q Consensus 31 ~~~~~rL~~f~v~~~~-g~l~v~e-v~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~ 108 (142)
+...+|| |-.+... ..|.-.. ...||+|++|.+. |++|.|+++|+|. ...+|+.|+++|.+|++..
T Consensus 743 f~~~~Rl--F~~sS~qa~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~Ywk~~---- 810 (919)
T KOG0445|consen 743 FNFAPRL--FILSSSQATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQYWKNL---- 810 (919)
T ss_pred cccccee--eeccchhhhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHHHHhcc----
Confidence 4568899 7665432 1121111 1248999999987 9999999999998 7789999999999999942
Q ss_pred CCCCceEEEecCCCCChhhHhhhcCCCCC
Q psy555 109 PERPRKLFLTLKGKESRRFTKCFHAWSFH 137 (142)
Q Consensus 109 ~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~ 137 (142)
..|-.+|..|-||..|+.+|+.|...
T Consensus 811 ---~~p~~vV~aGlEPl~Fk~lFp~We~r 836 (919)
T KOG0445|consen 811 ---KAPSYVVHAGLEPLTFKNLFPSWEHR 836 (919)
T ss_pred ---CCCceEEEcCcChhhhhhhCCCceec
Confidence 15678999999999999999999764
No 9
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.00045 Score=61.26 Aligned_cols=69 Identities=19% Similarity=0.376 Sum_probs=50.3
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHH-----------------------HHHHHHhhcCCCCCCCc
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKS-----------------------ALVYIQHLRAKEPERPR 113 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~-----------------------A~~y~~~~~~~~~~~~~ 113 (142)
+++.+.|.+..+|+||+|.+||+|+|++|.+......... +...+.+.+...+....
T Consensus 737 NaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl 816 (861)
T COG5028 737 NATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTL 816 (861)
T ss_pred hhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCcc
Confidence 6999999999999999999999999999997655433322 33444443221222346
Q ss_pred eEEEecCCCCCh
Q psy555 114 KLFLTLKGKESR 125 (142)
Q Consensus 114 ~i~~v~eG~Ep~ 125 (142)
++.+|.+|.+|.
T Consensus 817 ~lvlVR~~~d~s 828 (861)
T COG5028 817 PLVLVRGGGDPS 828 (861)
T ss_pred ceEEEecCCCcc
Confidence 788999998887
No 10
>KOG1984|consensus
Probab=97.20 E-value=0.0021 Score=57.87 Aligned_cols=66 Identities=17% Similarity=0.428 Sum_probs=48.1
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHH--------------------------HHHHHHHHHHHhhcCCCCC
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVK--------------------------LAYKSALVYIQHLRAKEPE 110 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~--------------------------~a~~~A~~y~~~~~~~~~~ 110 (142)
+.+.+.|.++.||+||.|.++|+|+|..++..-.. ..++-+..+++. .|.
T Consensus 882 raS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~----~r~ 957 (1007)
T KOG1984|consen 882 RASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR----QRS 957 (1007)
T ss_pred ecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh----ccc
Confidence 79999999999999999999999999998864321 122222244444 223
Q ss_pred CCceEEEecCCCCChh
Q psy555 111 RPRKLFLTLKGKESRR 126 (142)
Q Consensus 111 ~~~~i~~v~eG~Ep~~ 126 (142)
...++.++++|.++.+
T Consensus 958 ~~l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 958 SELPVVLVKQGLDGSE 973 (1007)
T ss_pred cccccEEEecCCCchh
Confidence 4689999999977664
No 11
>PTZ00395 Sec24-related protein; Provisional
Probab=96.49 E-value=0.0031 Score=59.22 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVE 89 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~e 89 (142)
+++.+.|.++.|||||.|..||+|+|+.+++.-
T Consensus 1435 rLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1435 PSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred cchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 688899999999999999999999999998653
No 12
>KOG1985|consensus
Probab=96.15 E-value=0.0035 Score=56.12 Aligned_cols=31 Identities=26% Similarity=0.706 Sum_probs=29.0
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSE 87 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~ 87 (142)
+++.+.|++..+|++|+|..+|+|+|+.|.+
T Consensus 764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred chHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 6889999999999999999999999999874
No 13
>PLN00162 transport protein sec23; Provisional
Probab=93.69 E-value=0.45 Score=43.06 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=33.3
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCC
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSK 84 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~ 84 (142)
.|+| |..+.+ +- .+.| .++.++|.++.+|+||++..|+||.|..
T Consensus 620 ~P~L--~sy~~~-~~--P~pv--~Ld~~si~~d~ilLLD~~f~vvi~~G~~ 663 (761)
T PLN00162 620 QPTL--ISYSFN-GP--PEPV--LLDVASIAADRILLLDSYFSVVIFHGST 663 (761)
T ss_pred CCeE--EEecCC-CC--Ccce--ecchhhccCCceEEEeCCCEEEEEecCc
Confidence 6889 666532 21 1123 6888899999999999999999999964
No 14
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=50.00 E-value=60 Score=25.33 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=32.1
Q ss_pred CCcEEEEecC-CeEE-------EEeCCCCCHHH--HHHHHHHHHHHHHhhcCCCCCCCceEEEecCCC
Q psy555 65 DDDMMILDNG-EQVF-------LWLGSKCSEVE--VKLAYKSALVYIQHLRAKEPERPRKLFLTLKGK 122 (142)
Q Consensus 65 s~~vfILD~g-~~Iy-------vW~G~~a~~~e--k~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~ 122 (142)
.+.+||++-. +++| +|.|++--.+- -+.|-++| .+++..+..+. ..++.+...|.
T Consensus 45 NG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlakwKtAEEv~-alirslP~eEq--PkqiIVtrk~m 109 (231)
T PF12134_consen 45 NGAIFIFNPRTGQLFLKIIHTSVWAGQKRLSQLAKWKTAEEVA-ALIRSLPKEEQ--PKQIIVTRKGM 109 (231)
T ss_dssp -EEEEEE-TTT-EEEEEEE-GGGGCC-SSHHHHHHHHHHHHHH-HHHHHS-CCCS--GSEEEECSGGC
T ss_pred cceEEEEeCCCCcEEEEEEeehhccchhHHHHHHHHhhHHHHH-HHHHhCCHhhC--CceEEEecHHH
Confidence 4678999876 4677 68898764332 23555555 57777654333 46777777774
No 15
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=37.27 E-value=29 Score=23.09 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.8
Q ss_pred CCCCCCcEEEEecCCeEEEE
Q psy555 61 DDLADDDMMILDNGEQVFLW 80 (142)
Q Consensus 61 ~~L~s~~vfILD~g~~IyvW 80 (142)
.|-+|+-.|++|+|.+|=+=
T Consensus 4 ~D~~s~~~fLVDTGA~vSvi 23 (89)
T cd06094 4 RDRTSGLRFLVDTGAAVSVL 23 (89)
T ss_pred EECCCCcEEEEeCCCceEee
Confidence 46788999999999988774
No 16
>PF11330 DUF3132: Protein of unknown function (DUF3132); InterPro: IPR021479 This entry is represented by the Citrus psorosis virus, 54kDa protein; it is a family of uncharacterised viral proteins.
Probab=36.49 E-value=38 Score=22.75 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy555 65 DDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYI 101 (142)
Q Consensus 65 s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~ 101 (142)
.+-|+|||...+=-.|+-.+.......-.-+.|.+||
T Consensus 87 gevvmildsrdegrmwikddvwaevtehgsksareyc 123 (124)
T PF11330_consen 87 GEVVMILDSRDEGRMWIKDDVWAEVTEHGSKSAREYC 123 (124)
T ss_pred CcEEEEEeccccCceeeechhHHHHHhhcchhhHhhc
Confidence 3558999998887888877766655555555566664
No 17
>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9.
Probab=31.45 E-value=76 Score=21.71 Aligned_cols=15 Identities=20% Similarity=0.740 Sum_probs=11.2
Q ss_pred CCeEEEEeCCCCCHH
Q psy555 74 GEQVFLWLGSKCSEV 88 (142)
Q Consensus 74 g~~IyvW~G~~a~~~ 88 (142)
+.++|.|.|.+.+..
T Consensus 30 ~pD~yF~~g~~~~p~ 44 (108)
T smart00686 30 GPDAYFWVGAGSRPD 44 (108)
T ss_pred CCcEEEEeccCCCCC
Confidence 457999999886543
No 18
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=31.31 E-value=1e+02 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAY 94 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~ 94 (142)
.+.-.......|||||-...| .|.|++....+...++
T Consensus 209 ~Lgi~N~~~GYvyLVD~~grI-RWagsG~At~~E~~~L 245 (252)
T PF05176_consen 209 ALGINNSYVGYVYLVDPNGRI-RWAGSGPATPEELESL 245 (252)
T ss_pred HhCCCCCCcCeEEEECCCCeE-EeCccCCCCHHHHHHH
Confidence 455666777999999987755 8999987655555444
No 19
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=25.61 E-value=75 Score=16.50 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=15.6
Q ss_pred CCCC-CcEEEEecCCeEEEEeC
Q psy555 62 DLAD-DDMMILDNGEQVFLWLG 82 (142)
Q Consensus 62 ~L~s-~~vfILD~g~~IyvW~G 82 (142)
+..+ +.++-++....||...|
T Consensus 14 svg~~~~vW~V~~~g~i~~r~g 35 (35)
T smart00706 14 SVGPSDTVWAVNSDGNIYRRTG 35 (35)
T ss_pred EECCCCeEEEEcCCCCEEEECC
Confidence 4444 77888888888888765
No 20
>KOG4614|consensus
Probab=24.95 E-value=1.3e+02 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Q psy555 61 DDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYI 101 (142)
Q Consensus 61 ~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~ 101 (142)
..+-+..||+||-...| .|.|.+....+...++..+-.++
T Consensus 244 nN~l~GyV~L~D~s~kI-RW~g~G~aTp~Eve~L~~~~k~L 283 (287)
T KOG4614|consen 244 NNLLTGYVLLLDKSGKI-RWQGFGTATPEEVEQLLSCTKLL 283 (287)
T ss_pred cceeeEEEEEEccCceE-EEeecCCCCHHHHHHHHHHHHHH
Confidence 45677899999998776 79998855444444444443444
No 21
>COG2823 OsmY Predicted periplasmic or secreted lipoprotein [General function prediction only]
Probab=24.42 E-value=1.9e+02 Score=21.95 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=36.5
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~ 99 (142)
-+..+.+++.++=+.=.++++|+ .|.=.+..|++.|.++|..
T Consensus 140 Ll~~~~v~s~~IkV~t~~g~V~L-~G~V~s~~e~~~A~~~A~~ 181 (196)
T COG2823 140 LLGDDNVKSSNIKVETENGEVYL-SGLVDSQEEAERAEEIASK 181 (196)
T ss_pred hccCCCCCcceEEEEEECCEEEE-EEEeCCHHHHHHHHHHHhc
Confidence 37778888889888888899999 8888899999999999864
No 22
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=24.39 E-value=1.1e+02 Score=15.48 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=10.8
Q ss_pred CcEEEEecCCeEEEE
Q psy555 66 DDMMILDNGEQVFLW 80 (142)
Q Consensus 66 ~~vfILD~g~~IyvW 80 (142)
...++|+...+||-|
T Consensus 9 ~ht~al~~~g~v~~w 23 (30)
T PF13540_consen 9 YHTCALTSDGEVYCW 23 (30)
T ss_dssp SEEEEEE-TTEEEEE
T ss_pred CEEEEEEcCCCEEEE
Confidence 456677777889999
No 23
>PF01295 Adenylate_cycl: Adenylate cyclase, class-I; InterPro: IPR000274 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria.; GO: 0004016 adenylate cyclase activity, 0006171 cAMP biosynthetic process
Probab=23.90 E-value=1.2e+02 Score=27.12 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=25.0
Q ss_pred CCCcEEEEecCCeEEEEeCCCCCHHHHHHHH
Q psy555 64 ADDDMMILDNGEQVFLWLGSKCSEVEVKLAY 94 (142)
Q Consensus 64 ~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~ 94 (142)
++-+|||||-.+.|+++.=+.++.++...-+
T Consensus 527 ~~~~vYILDE~n~l~~y~~~~~~~~~lv~~i 557 (604)
T PF01295_consen 527 NGFNVYILDEKNSLEHYQQCDGSKEELVREI 557 (604)
T ss_pred CceEEEEEcCCCcEEEEEeCCCCHHHHHHHH
Confidence 5578999999999999998888877665433
No 24
>KOG0925|consensus
Probab=23.86 E-value=2.6e+02 Score=24.86 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=47.5
Q ss_pred CccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555 58 FCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHA 133 (142)
Q Consensus 58 ~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~ 133 (142)
++-..|..-.|.|||- .+||..|..+-+..++.....++ ..++.++..-..-.-|..+|.+
T Consensus 152 ms~p~l~~y~viiLDe-------------ahERtlATDiLmGllk~v~~~rp--dLk~vvmSatl~a~Kfq~yf~n 212 (699)
T KOG0925|consen 152 MSDPLLGRYGVIILDE-------------AHERTLATDILMGLLKEVVRNRP--DLKLVVMSATLDAEKFQRYFGN 212 (699)
T ss_pred hhCcccccccEEEech-------------hhhhhHHHHHHHHHHHHHHhhCC--CceEEEeecccchHHHHHHhCC
Confidence 4445677788888875 57999999999998887544333 5888999888899999998865
No 25
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=22.10 E-value=2.6e+02 Score=18.90 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=38.4
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCc---cCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHH
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFC---QDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~---q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~ 99 (142)
.||| |-+...++.+. -|| |++ .-.+.+...|.+-+.+..|.-.=...++..-..|++-+..
T Consensus 37 ~PrL--~Yvdp~~~~~K-GeI--~~~~~l~v~~k~~~~F~I~tp~RtY~l~d~~~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 37 GPRL--FYVDPKKMVLK-GEI--PWSKELSVEVKSFKTFFIHTPKRTYYLEDPEGNAQQWVEAIEEVKK 100 (104)
T ss_dssp TTEE--EEEETTTTEEE-EEE----STT-EEEECSSSEEEEEETTEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred CCEE--EEEECCCCeEC-cEE--ecCCceEEEEccCCEEEEECCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 5899 87876655544 355 444 3345667899999999888887766666665555554443
No 26
>PF06124 DUF960: Staphylococcal protein of unknown function (DUF960); InterPro: IPR009303 This family consists of several hypothetical proteins from several species of bacteria. The function of this family is unknown.; PDB: 2R41_C.
Probab=20.86 E-value=2e+02 Score=19.09 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEccCCCeEEEEee----------cCCccCCCCCCcEEEEecCC
Q psy555 40 FRCSNEKGYFTVSEKC----------TDFCQDDLADDDMMILDNGE 75 (142)
Q Consensus 40 f~v~~~~g~l~v~ev~----------~~~~q~~L~s~~vfILD~g~ 75 (142)
|++....|.+.+.-.. .++.-+...+..|||+|.++
T Consensus 40 F~l~~~~~~l~i~~~qe~p~~~~~~d~~~~~~~~~p~kVyiiD~~~ 85 (94)
T PF06124_consen 40 FKLINNKGKLTIEHSQEEPEYKIEFDYNNPFDPFYPKKVYIIDEGD 85 (94)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEEEE--TTS-SEEEEEE-SS
T ss_pred EEeEccCCeEEEEEecCCCCeEEEEEecCCCCCCCCCEEEEEeCCC
Confidence 8887777776554321 12333445589999999986
No 27
>PF14465 NFRKB_winged: NFRKB Winged Helix-like; PDB: 3U21_B.
Probab=20.18 E-value=93 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=9.7
Q ss_pred CCeEEEEeCCCCCHHHHHH
Q psy555 74 GEQVFLWLGSKCSEVEVKL 92 (142)
Q Consensus 74 g~~IyvW~G~~a~~~ek~~ 92 (142)
..++|.|+|.+-..+.+..
T Consensus 76 ~~~~w~WIG~~rDsd~~L~ 94 (100)
T PF14465_consen 76 QTQQWQWIGAGRDSDKRLS 94 (100)
T ss_dssp TTTEEEE----TTTHHHHH
T ss_pred cccceeeccCCCccHHHHH
Confidence 4579999999766553333
Done!