Query psy555
Match_columns 142
No_of_seqs 118 out of 1072
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:24:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fg7_A Villin-1; actin binding 100.0 1.3E-33 4.5E-38 232.0 14.1 128 8-140 256-384 (398)
2 3fg6_A Adseverin, scinderin; C 100.0 4.9E-34 1.7E-38 232.8 11.3 128 8-139 243-371 (371)
3 2fh1_A Gelsolin; calcium, cont 100.0 2.3E-33 7.8E-38 226.6 12.8 130 8-140 201-331 (344)
4 1d0n_A Horse plasma gelsolin; 100.0 6.6E-31 2.3E-35 229.4 10.5 130 8-140 586-716 (729)
5 1j72_A Macrophage capping prot 100.0 4.5E-30 1.5E-34 207.3 13.3 122 8-135 217-347 (347)
6 1d0n_A Horse plasma gelsolin; 100.0 9.1E-28 3.1E-32 209.7 13.8 124 9-137 216-346 (729)
7 1kcq_A Gelsolin, brevin, ADF, 99.9 2.4E-24 8.2E-29 146.9 13.8 92 34-134 2-93 (104)
8 1svq_A Severin; actin-binding; 99.9 9.8E-23 3.4E-27 141.2 11.2 94 33-136 11-106 (114)
9 1j72_A Macrophage capping prot 99.8 6.1E-18 2.1E-22 136.3 13.4 94 33-135 134-227 (347)
10 2fh1_A Gelsolin; calcium, cont 99.7 2.6E-17 8.9E-22 132.6 12.2 86 33-133 123-209 (344)
11 3fg6_A Adseverin, scinderin; C 99.7 1.9E-16 6.4E-21 129.0 11.8 87 33-134 164-252 (371)
12 3fg7_A Villin-1; actin binding 99.6 2.7E-17 9.1E-22 135.1 0.0 87 33-133 177-264 (398)
13 3cip_G Gelsolin; actin, dictyo 98.8 3.3E-08 1.1E-12 69.3 9.9 89 35-133 18-115 (128)
14 2ff3_A Gelsolin; protein-prote 98.8 3.8E-08 1.3E-12 70.7 9.7 90 34-133 36-134 (150)
15 1t44_G Chimera of gelsolin dom 98.7 9E-08 3.1E-12 68.5 10.0 88 35-132 15-111 (147)
16 2vik_A Villin 14T; actin-bindi 98.7 6.7E-08 2.3E-12 67.5 7.5 71 58-133 34-112 (126)
17 3tu5_B Gelsolin, protein cordo 98.4 1.3E-06 4.4E-11 69.1 8.9 90 34-133 32-130 (297)
18 3eh2_A Protein transport prote 97.2 0.0015 5.1E-08 57.5 9.4 52 34-88 620-672 (766)
19 3efo_B SEC24 related gene fami 97.0 0.0023 7.7E-08 56.4 8.2 53 34-89 624-677 (770)
20 1pcx_A Protein transport prote 96.9 0.0025 8.6E-08 56.4 7.6 32 57-88 672-703 (810)
21 3eh1_A Protein transport prote 96.5 0.0015 5.2E-08 57.3 3.3 32 57-88 630-661 (751)
22 2nut_A Protein transport prote 96.1 0.015 5E-07 51.2 7.8 86 34-131 624-726 (769)
23 1m2o_A SEC23, protein transpor 96.0 0.023 7.8E-07 49.9 8.4 46 34-86 626-671 (768)
24 1m2v_B SEC24, protein transpor 95.9 0.02 6.8E-07 51.4 7.7 31 57-87 788-818 (926)
25 3tu5_B Gelsolin, protein cordo 64.8 2.4 8.3E-05 33.1 1.5 27 57-83 170-196 (297)
26 3enb_A PRE-mRNA-processing-spl 30.1 1.7E+02 0.0057 21.6 7.0 55 65-122 36-100 (222)
27 3sbg_A PRE-mRNA-splicing facto 29.2 1.6E+02 0.0056 24.8 6.9 55 65-122 44-108 (565)
28 3e9l_A PRE-mRNA-processing-spl 27.6 2E+02 0.0068 21.7 6.5 55 65-122 45-109 (257)
29 3sbt_A PRE-mRNA-splicing facto 27.2 1.9E+02 0.0065 21.8 6.3 55 65-122 44-108 (260)
30 2r41_A Uncharacterized protein 24.8 1E+02 0.0036 20.3 4.1 36 40-75 52-97 (110)
31 3me7_A Putative uncharacterize 23.3 1.6E+02 0.0055 19.6 5.2 34 64-97 126-160 (170)
32 3u21_A Nuclear factor related 23.3 41 0.0014 22.9 1.9 39 63-103 73-113 (127)
33 1fxk_C Protein (prefoldin); ar 23.0 31 0.0011 22.9 1.3 10 75-84 70-79 (133)
34 3fuy_A HFX_CASS1, putative int 21.7 1.1E+02 0.0038 20.8 3.8 26 79-104 113-138 (179)
No 1
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=100.00 E-value=1.3e-33 Score=232.04 Aligned_cols=128 Identities=34% Similarity=0.570 Sum_probs=96.9
Q ss_pred ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555 8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS 86 (142)
Q Consensus 8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~ 86 (142)
.+||. |||+.+|++.....++ .....+|| |+|++++|.+.++|| .+|+|+||+++||||||++.+||||+|++|+
T Consensus 256 ~~Fw~~LGg~~~~~~~~~~~~~-~~~~~~rL--f~~s~~~G~~~v~EV-~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as 331 (398)
T 3fg7_A 256 ANFWMALGGKAPYANTKRLQEE-NLVITPRL--FECSNKTGRFLATEI-PDFNQDDLEEDDVFLLDVWDQVFFWIGKHAN 331 (398)
T ss_dssp -----------------------CCCCCCEE--EEEECTTSSCEEEEC-TTCCGGGCCTTSEEEEECSSCEEEEECTTCC
T ss_pred hhHHHHhCCCccCCChhhhccc-hhcccCee--EEEEcCCCCEEEEEe-cccCHHHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 56999 9999999876543332 22458999 999999999999998 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555 87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP 140 (142)
Q Consensus 87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~ 140 (142)
..||+.|+.+|++|++..+. .+++.++|.+|.||.||..|+++|++|+..+++
T Consensus 332 ~~Er~~Al~~A~~yi~~~~~-~r~~~tpi~~V~eG~Ep~~Fk~~F~~Wd~~~~~ 384 (398)
T 3fg7_A 332 EEEKKAAATTAQEYLKTHPS-GRDPETPIIVVKQGHEPPTFTGWFLAWDPFKWS 384 (398)
T ss_dssp HHHHHHHHHHHHHHHHHSSS-SCCTTCCEEEEETTCCCHHHHTTSSCCCTTCC-
T ss_pred HHHHHHHHHHHHHHHHhCcc-cCCCCCCEEEEcCCCCCHHHHHhhhcCChhhhc
Confidence 99999999999999998644 233469999999999999999999999999875
No 2
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=232.78 Aligned_cols=128 Identities=34% Similarity=0.594 Sum_probs=106.6
Q ss_pred ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555 8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS 86 (142)
Q Consensus 8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~ 86 (142)
.+||. |||+++|++.....++. ...++|| |+|++++|.+.++||..+|+|+||++++|||||++.+||||+|++|+
T Consensus 243 ~~Fw~~LGg~~~~~~~~~~~~~~-~~~~~rL--f~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as 319 (371)
T 3fg6_A 243 EEFWNSLGGKKDYQTSPLLETQA-EDHPPRL--YGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDAN 319 (371)
T ss_dssp HHHHHHTTSCCCCBCCTTTSSCC-CSSCCEE--EEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred HHHHHHcCCCcccCcchhhcccc-cccCcEE--EEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 46999 99999998765433321 2357999 99999999999999955899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCC
Q psy555 87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKK 139 (142)
Q Consensus 87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~ 139 (142)
..||+.|+.+|++|++..+. +++..++|.+|.||.||..|+++|++|++.+|
T Consensus 320 ~~Er~~A~~~A~~yi~~~~~-~r~~~t~i~~v~eG~Ep~~Fk~~F~~W~~~~~ 371 (371)
T 3fg6_A 320 EVEKKESLKSAKMYLETDPS-GRDKRTPIVIIKQGHEPPTFTGWFLGWDSSKW 371 (371)
T ss_dssp HHHHHHHHHHHTTCC-----------CCEEEEETTCCCHHHHTTSSSCCTTCC
T ss_pred HHHHHHHHHHHHHHHHhCcc-CCCCCCCEEEecCCCCCHHHHhhhccCCcccC
Confidence 99999999999999998643 23357999999999999999999999999875
No 3
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=100.00 E-value=2.3e-33 Score=226.61 Aligned_cols=130 Identities=32% Similarity=0.492 Sum_probs=108.5
Q ss_pred ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555 8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS 86 (142)
Q Consensus 8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~ 86 (142)
.+||. |||+.+|++......+......+|| |+|++++|.+.++||..+|+|+||++++|||||++.+||||+|++|+
T Consensus 201 ~~Fw~~LGg~~~y~~~~~~~~~~~~~~~~rL--f~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as 278 (344)
T 2fh1_A 201 DGFWEALGGKAAYRTSPRLKDKKMDAHPPRL--FACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQ 278 (344)
T ss_dssp HHHHHHTTSCCCCBCCHHHHCSCC--CCCEE--EEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCC
T ss_pred HHHHHhcCCCCccccccccccccccccCCEE--EEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 47999 9999999875433212111368999 99999999999999955999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555 87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP 140 (142)
Q Consensus 87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~ 140 (142)
..||+.|+.+|++|++..+. ++++.++|.+|.||.||..|+++|++|++.+++
T Consensus 279 ~~er~~A~~~A~~y~~~~~~-~r~~~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~ 331 (344)
T 2fh1_A 279 EEEKTEALTSAKRYIETDPA-NRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWS 331 (344)
T ss_dssp HHHHHHHHHHHHHHHHTC--------CCEEEEETTCCCHHHHTTSSSCCTTCC-
T ss_pred HHHHHHHHHHHHHHHHhCcc-CCCCCCcEEEEcCCCCCHHHHHHHhhcChhhcC
Confidence 99999999999999997533 233579999999999999999999999999874
No 4
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=99.97 E-value=6.6e-31 Score=229.44 Aligned_cols=130 Identities=32% Similarity=0.504 Sum_probs=112.8
Q ss_pred ccccc-CcccCcccccccccCCCCccCcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555 8 AYCWS-KGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS 86 (142)
Q Consensus 8 ~~FW~-lGg~~~~~~~~~~~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~ 86 (142)
++||. |||+.+|++....+.+......+|| |+|++++|.+.++||..+|+|+||+++||||||++++||||+|++|+
T Consensus 586 ~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rL--f~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~ 663 (729)
T 1d0n_A 586 DSFWEALGGKATYRTSPRLKDKKMDAHPPRL--FACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQ 663 (729)
T ss_dssp HHHHHTTTSCCCCCCCCCCSTTHHHHSCCEE--EEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSC
T ss_pred HHHHHhcCCCCccCcccccccccccccCCeE--EEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCC
Confidence 57999 9999999886543122112458999 99999999999999955999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCCCCC
Q psy555 87 EVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKP 140 (142)
Q Consensus 87 ~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~~~~ 140 (142)
..||+.|+.+|++|++..+. ++++.++|.+|.+|.||..|+++|++|++.+++
T Consensus 664 ~~er~~al~~A~~Y~~~~~~-~r~~~~pi~~V~~G~Ep~~F~~~F~~Wd~~~~~ 716 (729)
T 1d0n_A 664 DEEKTEALTSAKRYIDTDPA-HRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWS 716 (729)
T ss_dssp HHHHSSHHHHHHHHHHHCTT-CCCTTCCEEEEETTCCCHHHHTTCTTCCGGGGT
T ss_pred HHHHHHHHHHHHHHHHhCcc-cCCCCCcEEEEeCCCCCHHHHhhhhhcCccccC
Confidence 99999999999999998544 233469999999999999999999999998763
No 5
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=99.97 E-value=4.5e-30 Score=207.29 Aligned_cols=122 Identities=23% Similarity=0.419 Sum_probs=105.0
Q ss_pred ccccc-CcccCcccccccccCC----CCccCcceeeeeEEEccCCCeEEEEee--cCCccCCCCCCcEEEEecC--CeEE
Q psy555 8 AYCWS-KGTFQSYASSINKRNQ----GKVSNLARLFGFRCSNEKGYFTVSEKC--TDFCQDDLADDDMMILDNG--EQVF 78 (142)
Q Consensus 8 ~~FW~-lGg~~~~~~~~~~~~~----~~~~~~~rL~~f~v~~~~g~l~v~ev~--~~~~q~~L~s~~vfILD~g--~~Iy 78 (142)
.+||. |||+.+|+.... .++ ......+|| |+|++.+|.+.++||. .+|+|++|++++|||||++ ++||
T Consensus 217 ~~Fw~~LGg~~~~~~~~~-~~d~~~~~~~~~~~rL--y~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~Iy 293 (347)
T 1j72_A 217 AEMIQVLGPKPALKEGNP-EEDLTADKANAQAAAL--YKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIY 293 (347)
T ss_dssp HHHHHHHCSCCCCBCSCC-SSCCTTSSSSSCCCEE--EEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEE
T ss_pred HHHHHHhCCCcccccCCc-chhhhhhhhcccCCEE--EEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEE
Confidence 37999 999988866532 111 111257899 9999999999999985 3899999999999999999 8999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCC
Q psy555 79 LWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135 (142)
Q Consensus 79 vW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~ 135 (142)
||+|++|+..||+.|+++|++|++..+ ++.+++|++|.||.||..|+++|.+|+
T Consensus 294 VW~G~~a~~~er~~A~~~A~~y~~~~~---rp~~~~i~~v~eG~Ep~~Fk~~F~~W~ 347 (347)
T 1j72_A 294 IWKGRKANEKERQAALQVAEGFISRMQ---YAPNTQVEILPQGRESPIFKQFFKDWK 347 (347)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHHT---CCTTCEEEEEETTCCCTTTCCBSTTCC
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcC---CCCCCeEEEEcCCCCCHHHHHHhhcCC
Confidence 999999999999999999999999753 334799999999999999999999996
No 6
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=99.95 E-value=9.1e-28 Score=209.69 Aligned_cols=124 Identities=25% Similarity=0.427 Sum_probs=106.2
Q ss_pred cccc-CcccCcccccccc--cCCCCccCcceeeeeEEEccCCCeEEEEeec--CCccCCCCCCcEEEEecCC-e-EEEEe
Q psy555 9 YCWS-KGTFQSYASSINK--RNQGKVSNLARLFGFRCSNEKGYFTVSEKCT--DFCQDDLADDDMMILDNGE-Q-VFLWL 81 (142)
Q Consensus 9 ~FW~-lGg~~~~~~~~~~--~~~~~~~~~~rL~~f~v~~~~g~l~v~ev~~--~~~q~~L~s~~vfILD~g~-~-IyvW~ 81 (142)
+||. |||+.+|+..... ..+......+|| |+|++++|.+.+++|.. +|+|++|++++|||||+++ + ||||+
T Consensus 216 eFw~~LGg~~~~~~~~~~~~~~~~~~~~~~rL--y~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~ 293 (729)
T 1d0n_A 216 AMLQVLGPKPTLPEATEDTVKEDAANRKLAKL--YKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWK 293 (729)
T ss_dssp HHHHHHCSCCCCCCCCGGGSCCCCCCCCCCEE--EEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEE
T ss_pred HHHHHcCCCcccCCCCcchhhhhhccccCcEE--EEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEE
Confidence 7999 9999888764321 111122457899 99999999999999953 8999999999999999995 4 99999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHhhhcCCCCC
Q psy555 82 GSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFH 137 (142)
Q Consensus 82 G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~W~~~ 137 (142)
|++|+..||+.||.+|++|++..+ ++.+++|++|.||.||..|+++|.+|++.
T Consensus 294 Gk~a~~~er~~A~~~A~~y~~~~~---~p~~t~i~~V~eG~Ep~~Fk~~F~~W~~~ 346 (729)
T 1d0n_A 294 GKQANMEERKAALKTASDFISKMD---YPKQTQVSVLPEGGETPLFRQFFKNWRDP 346 (729)
T ss_dssp CTTSCHHHHTTHHHHHHHHHHHTT---CCTTCEEEEEETTCCCHHHHTTBTTCCCT
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcc---CCCCCeEEEEeCCCCCHHHHHHHhcCCCc
Confidence 999999999999999999999853 23579999999999999999999999985
No 7
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=99.92 E-value=2.4e-24 Score=146.95 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=81.9
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCc
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPR 113 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~ 113 (142)
.+|| |||.+. +++++.|| ++++++|+++||||||+++.||||+|++|+..||.+|+++|+.+.... +...+
T Consensus 2 ~~rL--~~v~g~-~~~~~~eV--~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i~~~e----r~~~~ 72 (104)
T 1kcq_A 2 VQRL--FQVKGR-RVVRATEV--PVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNE----RSGRA 72 (104)
T ss_dssp CCEE--EEEEES-SSEEEEEE--CSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHT----STTCS
T ss_pred CcEE--EEEECC-CcEEEEEe--cCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhhc----cCCCC
Confidence 5799 999985 79999999 999999999999999999999999999999999999999998764331 12258
Q ss_pred eEEEecCCCCChhhHhhhcCC
Q psy555 114 KLFLTLKGKESRRFTKCFHAW 134 (142)
Q Consensus 114 ~i~~v~eG~Ep~~Fk~~F~~W 134 (142)
+|.+|.||.||..|+..|.+=
T Consensus 73 ~i~~v~eG~E~~~Fw~~LGg~ 93 (104)
T 1kcq_A 73 RVHVSEEGTEPEAMLQVLGPK 93 (104)
T ss_dssp EEEEEETTCCCHHHHHHHCSC
T ss_pred cEEEEeCCCCCHHHHHHcCCC
Confidence 999999999999999999864
No 8
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=99.89 E-value=9.8e-23 Score=141.16 Aligned_cols=94 Identities=22% Similarity=0.205 Sum_probs=81.1
Q ss_pred CcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy555 33 NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERP 112 (142)
Q Consensus 33 ~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~ 112 (142)
..+|| |||++. .++++.|| +++.++|+++||||||++..||||+|++|+..||.+|+++|+.+ ...+. ..
T Consensus 11 ~~~rL--~~v~G~-~~~~~~eV--~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i-~~er~----g~ 80 (114)
T 1svq_A 11 YKPRL--LHISGD-KNAKVAEV--PLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI-DAERK----GL 80 (114)
T ss_dssp CCEEE--EEEECT-TSCEEEEE--CCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH-HHHHT----TC
T ss_pred CCcEE--EEEECC-CcEEEEEe--cCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh-hhccC----CC
Confidence 47899 999975 68999998 99999999999999999999999999999999999999999986 43211 13
Q ss_pred ceEEEecCCC--CChhhHhhhcCCCC
Q psy555 113 RKLFLTLKGK--ESRRFTKCFHAWSF 136 (142)
Q Consensus 113 ~~i~~v~eG~--Ep~~Fk~~F~~W~~ 136 (142)
++|.+|.||. ||..||..|.+=..
T Consensus 81 ~~i~vv~eg~~~E~~~Fw~~LGg~~~ 106 (114)
T 1svq_A 81 PKVEVFCETDSDIPAEFWKLLGGKGA 106 (114)
T ss_dssp SEEEECCCCTTCCCHHHHHHHTC---
T ss_pred ccEEEEeCCCcCCcHHHHHHcCCCCC
Confidence 7899999999 99999999986443
No 9
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=99.76 E-value=6.1e-18 Score=136.28 Aligned_cols=94 Identities=21% Similarity=0.367 Sum_probs=81.1
Q ss_pred CcceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy555 33 NLARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERP 112 (142)
Q Consensus 33 ~~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~ 112 (142)
..+|| |||.+. +++++.|| +++.++|+++||||||++..||+|+|++|+..||.+|+.+|+.+ +.. .+...
T Consensus 134 ~~~rL--~~v~G~-~~v~~~eV--~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~Er~~A~~~a~~i-~~~---~~~g~ 204 (347)
T 1j72_A 134 VVQRL--YQVKGK-KNIRATER--ALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAI-RDS---ERQGK 204 (347)
T ss_dssp EEEEE--EEEECS-SSCEEEEE--CSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHH-HTT---SCCSS
T ss_pred CCcEE--EEEECC-CceEEEEE--eeeHHHcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHH-Hhh---ccCCC
Confidence 35899 999875 58899998 99999999999999999999999999999999999999999864 421 11224
Q ss_pred ceEEEecCCCCChhhHhhhcCCC
Q psy555 113 RKLFLTLKGKESRRFTKCFHAWS 135 (142)
Q Consensus 113 ~~i~~v~eG~Ep~~Fk~~F~~W~ 135 (142)
+.+.+|.||.||..|+++|.+-.
T Consensus 205 ~~v~~v~EG~E~~~Fw~~LGg~~ 227 (347)
T 1j72_A 205 AQVEIVTDGEEPAEMIQVLGPKP 227 (347)
T ss_dssp CEEEEEETTCCCHHHHHHHCSCC
T ss_pred ceEEEEeCCCCHHHHHHHhCCCc
Confidence 78999999999999999997643
No 10
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=99.73 E-value=2.6e-17 Score=132.63 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=77.1
Q ss_pred CcceeeeeEEEc-cCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555 33 NLARLFGFRCSN-EKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER 111 (142)
Q Consensus 33 ~~~rL~~f~v~~-~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~ 111 (142)
..+|| |||+. ..+++++.|| +++.++|+|+||||||++..||||+|++|+..||.+|+.+|+.+
T Consensus 123 ~~~rL--~~v~g~~~~~~~~~eV--~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l----------- 187 (344)
T 2fh1_A 123 ASTRL--FQVRANSAGATRAVEV--LPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVL----------- 187 (344)
T ss_dssp CSSEE--EEEEECTTCCEEEEEE--CCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHT-----------
T ss_pred CCceE--EEEECCCCCceEEEEe--cCchhhcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHh-----------
Confidence 46899 99985 4468999999 99999999999999999999999999999999999999999764
Q ss_pred CceEEEecCCCCChhhHhhhcC
Q psy555 112 PRKLFLTLKGKESRRFTKCFHA 133 (142)
Q Consensus 112 ~~~i~~v~eG~Ep~~Fk~~F~~ 133 (142)
..++.+|.||.||.+|+..|.+
T Consensus 188 ~~~i~~v~EG~E~~~Fw~~LGg 209 (344)
T 2fh1_A 188 RAQPVQVAEGSEPDGFWEALGG 209 (344)
T ss_dssp TCCCEEEETTCCCHHHHHHTTS
T ss_pred CCCcEEEeCCCCcHHHHHhcCC
Confidence 1457899999999999999975
No 11
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=128.99 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=75.1
Q ss_pred CcceeeeeEEEccC-CCeEEEEeecCCccCCCCCCcEEEEecC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Q psy555 33 NLARLFGFRCSNEK-GYFTVSEKCTDFCQDDLADDDMMILDNG-EQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPE 110 (142)
Q Consensus 33 ~~~rL~~f~v~~~~-g~l~v~ev~~~~~q~~L~s~~vfILD~g-~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~ 110 (142)
..+|| |||.... ..+++.|| +++.++|+|+||||||++ +.||+|+|++|+..||.+|+.+|+.+ +
T Consensus 164 ~~~rL--~~vrg~~~~~vr~~EV--~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~Er~~A~~~a~~i-~-------- 230 (371)
T 3fg6_A 164 PPTRL--FQVRRNLASITRIVEV--DVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEYVASVL-K-------- 230 (371)
T ss_dssp -CCEE--EEEECCSSSCCEEEEE--CSSGGGCBTTSEEEEECTTSEEEEEECTTCCHHHHHHHHHHHHHT-T--------
T ss_pred CccEE--EEEeccCCCceEEEEe--cCCHHHccCCCeEEEEcCCCeEEEEECCCCCHHHHHHHHHHHHHh-c--------
Confidence 46899 9998653 47899998 999999999999999999 99999999999999999999999763 2
Q ss_pred CCceEEEecCCCCChhhHhhhcCC
Q psy555 111 RPRKLFLTLKGKESRRFTKCFHAW 134 (142)
Q Consensus 111 ~~~~i~~v~eG~Ep~~Fk~~F~~W 134 (142)
..+.+|.||.||.+|+..|.+=
T Consensus 231 --~~~~~v~EG~Ep~~Fw~~LGg~ 252 (371)
T 3fg6_A 231 --CKTLRIQEGEEPEEFWNSLGGK 252 (371)
T ss_dssp --CEEEEEETTCCCHHHHHHTTSC
T ss_pred --CCeEEEeCCCCCHHHHHHcCCC
Confidence 1136789999999999999764
No 12
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=99.62 E-value=2.7e-17 Score=135.09 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred CcceeeeeEEEccCC-CeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy555 33 NLARLFGFRCSNEKG-YFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPER 111 (142)
Q Consensus 33 ~~~rL~~f~v~~~~g-~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~ 111 (142)
..+|| |||.+... +.++.|| +++.++|+|+||||||+++.||+|+|++|+..||.+|+.+|+.+ +.
T Consensus 177 ~~~rL--f~VrG~~~~~~ra~EV--~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i-~~-------- 243 (398)
T 3fg7_A 177 PSTRL--FQVQGTGANNTKAFEV--PARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVADTI-SR-------- 243 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEE--EEEECCCCCceEEEEe--cCCHHHccCCceEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHh-cC--------
Confidence 46899 99986542 5788888 89999999999999999999999999999999999999999864 21
Q ss_pred CceEEEecCCCCChhhHhhhcC
Q psy555 112 PRKLFLTLKGKESRRFTKCFHA 133 (142)
Q Consensus 112 ~~~i~~v~eG~Ep~~Fk~~F~~ 133 (142)
..+.+|.||.||.+|+..+.+
T Consensus 244 -~~~~~v~EG~Ep~~Fw~~LGg 264 (398)
T 3fg7_A 244 -TEKQVVVEGQEPANFWMALGG 264 (398)
T ss_dssp ----------------------
T ss_pred -CcEEEEeCCCCchhHHHHhCC
Confidence 456789999999999998875
No 13
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=98.82 E-value=3.3e-08 Score=69.30 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=64.2
Q ss_pred ceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Q psy555 35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN------G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLR 105 (142)
Q Consensus 35 ~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~------g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~ 105 (142)
+.|-+||+.+. ....+ .+-..-.+.++||||+=. + ..||.|+|++|+.+|+..|...|.+.-....
T Consensus 18 ~gl~vWrIe~~----~~~~v-p~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg 92 (128)
T 3cip_G 18 PGLQIWRVEKF----DLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN 92 (128)
T ss_dssp SEEEEEEEETT----EEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCC----EEEEC-ChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHHcC
Confidence 33434888632 33333 123456788999999722 2 3699999999999999999888888655532
Q ss_pred CCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555 106 AKEPERPRKLFLTLKGKESRRFTKCFHA 133 (142)
Q Consensus 106 ~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~ 133 (142)
+ .+...++.||+||..|.++|.+
T Consensus 93 --g---~~vq~R~~QG~E~~~Fl~~F~~ 115 (128)
T 3cip_G 93 --G---RAVQHREVQGFESATFLGYFKS 115 (128)
T ss_dssp --T---CEEEEEEETTCCCHHHHTTCTT
T ss_pred --C---CceEEEeECCCCCHHHHHHhCC
Confidence 1 2456789999999999999974
No 14
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=98.80 E-value=3.8e-08 Score=70.71 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=64.7
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN------G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHL 104 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~------g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~ 104 (142)
.+.|-+||+.+ +....+ .+-..-.+.++||||+=. + ..||.|+|++|+.+|+..|...|.+.-...
T Consensus 36 ~~gl~VWrIe~----~~~v~v-p~~~~G~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~~l 110 (150)
T 2ff3_A 36 EPGLQIWRVEK----FDLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL 110 (150)
T ss_dssp SSEEEEEEEET----TEEEEC-CGGGTTEEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeC----CEEEEC-ChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHHHc
Confidence 33444488863 233343 123456789999999621 2 369999999999999999988888866553
Q ss_pred cCCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555 105 RAKEPERPRKLFLTLKGKESRRFTKCFHA 133 (142)
Q Consensus 105 ~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~ 133 (142)
. + .+...++.||.||..|.++|.+
T Consensus 111 g--g---~~vQ~Re~QG~Ep~~Fl~lFkg 134 (150)
T 2ff3_A 111 N--G---RAVQHREVQGFESATFLGYFKS 134 (150)
T ss_dssp T--T---CCEEEEEETTCCCHHHHHTCTT
T ss_pred C--C---CceEEEeECCCCCHHHHHHhcC
Confidence 2 1 2456789999999999999973
No 15
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=98.74 E-value=9e-08 Score=68.54 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=63.7
Q ss_pred ceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEec------C---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhhc
Q psy555 35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDN------G---EQVFLWLGSKCSEVEVKLAYKSALVYIQHLR 105 (142)
Q Consensus 35 ~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~------g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~ 105 (142)
+.|-+||+.+. ....+ .+-..-.+.++||||+=. + ..||.|+|++|+.+++-.|...|.+.-....
T Consensus 15 ~gl~VWrIe~~----~~~~v-p~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg 89 (147)
T 1t44_G 15 PGLQIWRVEKF----DLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLN 89 (147)
T ss_dssp SEEEEEEEETT----EEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCC----EEEEC-ChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHHcC
Confidence 33433888632 33333 123456789999999722 2 3699999999999999999888888655432
Q ss_pred CCCCCCCceEEEecCCCCChhhHhhhc
Q psy555 106 AKEPERPRKLFLTLKGKESRRFTKCFH 132 (142)
Q Consensus 106 ~~~~~~~~~i~~v~eG~Ep~~Fk~~F~ 132 (142)
+ .+...++.||+||..|.++|.
T Consensus 90 --g---~~vq~R~~QG~Ep~~Fl~~F~ 111 (147)
T 1t44_G 90 --G---RAVQHREVQGFESATFLGYFK 111 (147)
T ss_dssp --T---CCEEEEEETTCCCHHHHTTCT
T ss_pred --C---CceEEEEECCCCCHHHHHHhC
Confidence 1 255678999999999999997
No 16
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=98.67 E-value=6.7e-08 Score=67.54 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=56.3
Q ss_pred CccCCCCCCcEEEEec--------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEecCCCCChhhHh
Q psy555 58 FCQDDLADDDMMILDN--------GEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTK 129 (142)
Q Consensus 58 ~~q~~L~s~~vfILD~--------g~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~Ep~~Fk~ 129 (142)
-..-.+.++||||+=. ...||.|+|++|+.+|+-.|...|.+.-.... + .+...++.||+||..|.+
T Consensus 34 ~~~G~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lg--g---~~vq~R~~QG~E~~~Fl~ 108 (126)
T 2vik_A 34 KSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLG--S---VAVQHREVQGHESETFRA 108 (126)
T ss_dssp TTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTT--S---CSCEEEEETTTSHHHHHH
T ss_pred hhcCeeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcC--C---CccEEEEECCCCCHHHHH
Confidence 4456789999999822 24699999999999999999888888655432 1 244678999999999999
Q ss_pred hhcC
Q psy555 130 CFHA 133 (142)
Q Consensus 130 ~F~~ 133 (142)
+|.+
T Consensus 109 ~F~~ 112 (126)
T 2vik_A 109 YFKQ 112 (126)
T ss_dssp HCSS
T ss_pred HcCC
Confidence 9974
No 17
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=98.39 E-value=1.3e-06 Score=69.11 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=64.8
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEe------cC---CeEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILD------NG---EQVFLWLGSKCSEVEVKLAYKSALVYIQHL 104 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD------~g---~~IyvW~G~~a~~~ek~~a~~~A~~y~~~~ 104 (142)
.+-|-+||+. ++.+..| ..-..-.+.+.||||+= .+ ..||.|+|+.|+.+|+-.|...|.+.-...
T Consensus 32 ~~Gl~iWrIe----~~~~~~v-~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~~l 106 (297)
T 3tu5_B 32 EPGLQIWRVE----KFDLVPV-PTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYL 106 (297)
T ss_dssp SSEEEEEEEE----TTEEEEC-CGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEc----CCEEEEC-CHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHHHHHHHHHHc
Confidence 3434448885 3444444 23445668899999872 22 369999999999999999998888855543
Q ss_pred cCCCCCCCceEEEecCCCCChhhHhhhcC
Q psy555 105 RAKEPERPRKLFLTLKGKESRRFTKCFHA 133 (142)
Q Consensus 105 ~~~~~~~~~~i~~v~eG~Ep~~Fk~~F~~ 133 (142)
. + ...-.++.||+||..|.++|.+
T Consensus 107 g--g---~~vq~Re~Qg~Es~~Fl~~F~~ 130 (297)
T 3tu5_B 107 N--G---RAVQHREVQGFESATFLGYFKS 130 (297)
T ss_dssp T--T---CCEEEEEETTCCCHHHHTTCTT
T ss_pred C--C---CceEEEEeCCcCCHHHHHHhcc
Confidence 2 1 2445689999999999999974
No 18
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.22 E-value=0.0015 Score=57.47 Aligned_cols=52 Identities=23% Similarity=0.473 Sum_probs=37.6
Q ss_pred cceeeeeEEEcc-CCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555 34 LARLFGFRCSNE-KGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEV 88 (142)
Q Consensus 34 ~~rL~~f~v~~~-~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ 88 (142)
.|+| |.+++- .......+- .+++.+.|.++.+|+||+|..||+|+|+.+++.
T Consensus 620 yP~L--~~~h~~~~~~~~~P~~-v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ 672 (766)
T 3eh2_A 620 YPRL--LPLTKSPVESTTEPPA-VRASEERLSNGDIYLLENGLNLFLWVGASVQQG 672 (766)
T ss_dssp SCEE--EECSSCCCSCC--CCC-BCSSGGGCCTTCEEEEECSSEEEEEECTTCCHH
T ss_pred hheE--EEeecCCcccccCCCC-cCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHH
Confidence 6889 877521 111112111 268999999999999999999999999998764
No 19
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.98 E-value=0.0023 Score=56.35 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=37.8
Q ss_pred cceeeeeEEEccCCCe-EEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCHHH
Q psy555 34 LARLFGFRCSNEKGYF-TVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVE 89 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l-~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~e 89 (142)
.|+| |.+.+-.... ...+ ..+++.+.|.++.+|+||+|..||+|+|+.+++.-
T Consensus 624 yP~L--~~~h~l~~~~~~~P~-~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l 677 (770)
T 3efo_B 624 YPQL--LPIHTLDVKSTMLPA-AVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPEL 677 (770)
T ss_dssp SCEE--EECTTCCSSSCSCCC-CCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHH
T ss_pred ccce--EEEeccccccccCCC-CcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHH
Confidence 6889 8774211110 1111 12688999999999999999999999999987643
No 20
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=96.87 E-value=0.0025 Score=56.36 Aligned_cols=32 Identities=22% Similarity=0.598 Sum_probs=29.5
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEV 88 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ 88 (142)
+++.+.|+++.+||||+|..||+|+|+.++++
T Consensus 672 ~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~ 703 (810)
T 1pcx_A 672 NATSSLFERYGLYLIDNGNELFLWMGGDAVPA 703 (810)
T ss_dssp CSSTTSCCTTCEEEEECSSEEEEEECTTCCHH
T ss_pred cCCHHHhCcCCEEEEECCCEEEEEeCCCCCHH
Confidence 78999999999999999999999999998754
No 21
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=96.46 E-value=0.0015 Score=57.31 Aligned_cols=32 Identities=19% Similarity=0.705 Sum_probs=28.9
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCHH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEV 88 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~~ 88 (142)
+++.+.|.++.+|+||+|..||+|+|+.++++
T Consensus 630 ~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ 661 (751)
T 3eh1_A 630 KLSAEKLTREGAFLMDCGSVFYIWVGKGCDNN 661 (751)
T ss_dssp CSSGGGCCTTSEEEEECSSEEEEEECTTCCHH
T ss_pred cCCHHHcccCCEEEEECCCEEEEEECCCCCHH
Confidence 46888999999999999999999999998753
No 22
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=96.14 E-value=0.015 Score=51.17 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=54.6
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCCH--------HH----HHH----HHHHH
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSE--------VE----VKL----AYKSA 97 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~--------~e----k~~----a~~~A 97 (142)
.|+| |.++.. |. .+.+ +++.+.|.++.+||||+|..||||+|+.+.. .+ .+. ....|
T Consensus 624 yP~L--~~~~~~-~~--P~~v--~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a 696 (769)
T 2nut_A 624 QPIL--YAYSFS-GP--PEPV--LLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDA 696 (769)
T ss_dssp SCEE--EEECSS-SS--CEEC--CSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHH
T ss_pred cCEE--EeccCC-CC--CCce--eCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHH
Confidence 5899 877643 32 2233 8999999999999999999999999976532 01 112 23355
Q ss_pred HHHHHhhcCCCCCCCceEEEecCC-CCChhhHhhh
Q psy555 98 LVYIQHLRAKEPERPRKLFLTLKG-KESRRFTKCF 131 (142)
Q Consensus 98 ~~y~~~~~~~~~~~~~~i~~v~eG-~Ep~~Fk~~F 131 (142)
++++.. +. | ...+.++.|| ++..-|.+..
T Consensus 697 ~~i~~~-R~--p--~Pr~i~~~~g~sqaRfl~skl 726 (769)
T 2nut_A 697 QEILHS-RF--P--MPRYIDTEHGGSQARFLLSKV 726 (769)
T ss_dssp HHHHHH-SS--S--CCEEEEEETTCSTTHHHHHHC
T ss_pred HHHHhc-CC--C--CCeEEEEcCCCcHHHHHHHhc
Confidence 555443 12 1 2356677776 4555555544
No 23
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=96.03 E-value=0.023 Score=49.95 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=36.5
Q ss_pred cceeeeeEEEccCCCeEEEEeecCCccCCCCCCcEEEEecCCeEEEEeCCCCC
Q psy555 34 LARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCS 86 (142)
Q Consensus 34 ~~rL~~f~v~~~~g~l~v~ev~~~~~q~~L~s~~vfILD~g~~IyvW~G~~a~ 86 (142)
.|+| |.++.. |. .+.+ +++.+.|.++.+||||+|..||||+|..++
T Consensus 626 yP~L--~~~~~~-~~--P~~v--~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~ 671 (768)
T 1m2o_A 626 QPTL--TSFSME-DD--PQPV--LLDSISVKPNTILLLDTFFFILIYHGEQIA 671 (768)
T ss_dssp SCEE--EEECSS-SC--CEEC--CSBGGGCCTTCEEEEECSSEEEEEECHHHH
T ss_pred CCeE--EEecCC-CC--Ccce--eCcHHHcCCCCEEEEECCCEEEEEECCcch
Confidence 6899 877643 32 2233 799999999999999999999999998553
No 24
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=95.94 E-value=0.02 Score=51.38 Aligned_cols=31 Identities=23% Similarity=0.617 Sum_probs=28.9
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCCCCCH
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSE 87 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~~a~~ 87 (142)
+++.+.|+++.+||||+|..||+|+|+.+++
T Consensus 788 ~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p 818 (926)
T 1m2v_B 788 NATSSLFERYGLYLIDNGNELFLWMGGDAVP 818 (926)
T ss_dssp CSCSTTCCTTCEEEEECSSEEEEEECTTCCS
T ss_pred cCcHHHhccCCEEEEECCCEEEEEecCCCCH
Confidence 7899999999999999999999999998773
No 25
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=64.80 E-value=2.4 Score=33.06 Aligned_cols=27 Identities=7% Similarity=-0.190 Sum_probs=0.0
Q ss_pred CCccCCCCCCcEEEEecCCeEEEEeCC
Q psy555 57 DFCQDDLADDDMMILDNGEQVFLWLGS 83 (142)
Q Consensus 57 ~~~q~~L~s~~vfILD~g~~IyvW~G~ 83 (142)
.++.-.+++.+|||+|.+..+|.|.++
T Consensus 170 ~ls~vs~~~Gd~fi~Dv~~~A~q~le~ 196 (297)
T 3tu5_B 170 LLAAIRGHSGTLSLRKVSSLASEELQS 196 (297)
T ss_dssp ---------------------------
T ss_pred eeeEEeccCCceeeccccHHHHHHHHH
Confidence 466778999999999999999999754
No 26
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=30.09 E-value=1.7e+02 Score=21.65 Aligned_cols=55 Identities=31% Similarity=0.501 Sum_probs=35.5
Q ss_pred CCcEEEEecC-CeEEE-------EeCCCCCHHH-H-HHHHHHHHHHHHhhcCCCCCCCceEEEecCCC
Q psy555 65 DDDMMILDNG-EQVFL-------WLGSKCSEVE-V-KLAYKSALVYIQHLRAKEPERPRKLFLTLKGK 122 (142)
Q Consensus 65 s~~vfILD~g-~~Iyv-------W~G~~a~~~e-k-~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~ 122 (142)
.+.+||++-. +++|+ |.|++--.+- | +.|-++| .+++..+..+. ..++.+...|.
T Consensus 36 NG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKwKtAEEv~-alirslP~eEq--PkqiIVtrk~m 100 (222)
T 3enb_A 36 NGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVA-ALIRSLPVEEQ--PKQIIVTRKGM 100 (222)
T ss_dssp CEEEEEECTTTCEEEEEEECGGGCCSCSCHHHHHHHHHHHHHH-HHHHHSCGGGS--CSEEEESSGGG
T ss_pred cceEEEEeCCCCcEEEEEEEehhcccchHHHHHHHHHHHHHHH-HHHHhCCHhhC--CceEEEechHh
Confidence 4678888775 46775 9997765442 4 4566666 57777554332 36777777774
No 27
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=29.18 E-value=1.6e+02 Score=24.79 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=36.5
Q ss_pred CCcEEEEecC-CeEEE-------EeCCCCCHH-HH-HHHHHHHHHHHHhhcCCCCCCCceEEEecCCC
Q psy555 65 DDDMMILDNG-EQVFL-------WLGSKCSEV-EV-KLAYKSALVYIQHLRAKEPERPRKLFLTLKGK 122 (142)
Q Consensus 65 s~~vfILD~g-~~Iyv-------W~G~~a~~~-ek-~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~ 122 (142)
.+.+||+.-. +++|+ |.|.+--.+ .| +.|-++| .+++..+..+. ..+|++...|.
T Consensus 44 NGaififNP~TGqLfLKiIHtsvwaGQKRl~QlaKWKtAEEva-aLirSlP~EEq--PkqiIvtrkgm 108 (565)
T 3sbg_A 44 NGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVS-ALVRSLPKEEQ--PKQIIVTRKAM 108 (565)
T ss_dssp CEEEEEECTTTCEEEEEEECGGGGTTCSSHHHHHHHHHHHHHH-HHHHHSCTTTS--CSEEEESSGGG
T ss_pred cceEEEEeCCCCcEEEEEEEehhcccchHHHHHHhHhHHHHHH-HHHhcCCHhhC--CceEEEechhh
Confidence 3678888665 47886 999886554 44 5666777 57887654332 36777777774
No 28
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=27.58 E-value=2e+02 Score=21.70 Aligned_cols=55 Identities=31% Similarity=0.501 Sum_probs=35.5
Q ss_pred CCcEEEEecC-CeEEE-------EeCCCCCHHH-H-HHHHHHHHHHHHhhcCCCCCCCceEEEecCCC
Q psy555 65 DDDMMILDNG-EQVFL-------WLGSKCSEVE-V-KLAYKSALVYIQHLRAKEPERPRKLFLTLKGK 122 (142)
Q Consensus 65 s~~vfILD~g-~~Iyv-------W~G~~a~~~e-k-~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~ 122 (142)
.+.+||++-. +++|+ |.|++--.+- | +.|-++| .+++..+..+. ..++.+...|.
T Consensus 45 NG~ifIfnP~TGqLflKiihtsvwaGQKRl~qlaKwKtAEEv~-alirslP~eEq--PkqiIVtrk~m 109 (257)
T 3e9l_A 45 NGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVA-ALIRSLPVEEQ--PKQIIVTRKGM 109 (257)
T ss_dssp CEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHHHHHHH-HHHHHSCGGGS--CSEEEESSGGG
T ss_pred cceEEEEeCCCCcEEEEEEEhhhcccchHHHHHHHHHHHHHHH-HHHHhCCHhhC--CceEEEechHh
Confidence 3678999776 46776 8897765442 4 4566666 57777554332 46777777774
No 29
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=27.24 E-value=1.9e+02 Score=21.82 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=35.2
Q ss_pred CCcEEEEecC-CeEEE-------EeCCCCCHH-HH-HHHHHHHHHHHHhhcCCCCCCCceEEEecCCC
Q psy555 65 DDDMMILDNG-EQVFL-------WLGSKCSEV-EV-KLAYKSALVYIQHLRAKEPERPRKLFLTLKGK 122 (142)
Q Consensus 65 s~~vfILD~g-~~Iyv-------W~G~~a~~~-ek-~~a~~~A~~y~~~~~~~~~~~~~~i~~v~eG~ 122 (142)
.+.+||++-. +++|+ |.|++--.+ .| +.|-++| .+++..+..+. ..++.+...|.
T Consensus 44 NG~ififnP~TGqLfLKiihtsvwaGQKRl~qlaKwKtAEEva-alirSlP~eEq--PkqiIVtrk~m 108 (260)
T 3sbt_A 44 NGCIFTLNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVS-ALVRSLPKEEQ--PKQIIVTRKAM 108 (260)
T ss_dssp CEEEEEECTTTCEEEEEEECGGGGTTCSCHHHHHHHHHHHHHH-HHHHHSCGGGS--CSEEEESSGGG
T ss_pred cceEEEEeCCCCcEEEEEEehhhcccchHHHHHHHHhHHHHHH-HHHHcCCHhhC--CceEEEechHh
Confidence 3678888775 46776 889776444 34 4566666 57777554332 36777777764
No 30
>2r41_A Uncharacterized protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics; 2.90A {Enterococcus faecalis}
Probab=24.81 E-value=1e+02 Score=20.30 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=23.5
Q ss_pred eEEEccCCCeEEEEee----------cCCccCCCCCCcEEEEecCC
Q psy555 40 FRCSNEKGYFTVSEKC----------TDFCQDDLADDDMMILDNGE 75 (142)
Q Consensus 40 f~v~~~~g~l~v~ev~----------~~~~q~~L~s~~vfILD~g~ 75 (142)
|++....|++.+.-.. .++.-+-..+..||++|.|+
T Consensus 52 F~L~nn~~~lti~~sqe~~~~~~~fD~~y~fd~~~p~~V~viD~~~ 97 (110)
T 2r41_A 52 FDLLNNNGKVTVHFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGH 97 (110)
T ss_dssp EEEEEETTEEEEEEEETTCCCCEEEEEEEECCTTSCSEEEEEECSS
T ss_pred EEEEecCCcEEEEEeccCCceEEeeccccccCCCCCCEEEEEeCCC
Confidence 8887777776654321 13444555688899999985
No 31
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=23.32 E-value=1.6e+02 Score=19.58 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=24.0
Q ss_pred CCCcEEEEecCC-eEEEEeCCCCCHHHHHHHHHHH
Q psy555 64 ADDDMMILDNGE-QVFLWLGSKCSEVEVKLAYKSA 97 (142)
Q Consensus 64 ~s~~vfILD~g~-~IyvW~G~~a~~~ek~~a~~~A 97 (142)
.+..+||+|..+ -+++|.|...+..+-..+++-|
T Consensus 126 ~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 126 HPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp CCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred cCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 345689999765 4788999987766666655443
No 32
>3u21_A Nuclear factor related to kappa-B-binding protein; DNA/RNA-binding 3-helical bundle, winged-HTH domain, structu genomics; HET: MSE MLY; 2.18A {Homo sapiens}
Probab=23.26 E-value=41 Score=22.89 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=20.4
Q ss_pred CCCCcEEEEecC--CeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Q psy555 63 LADDDMMILDNG--EQVFLWLGSKCSEVEVKLAYKSALVYIQH 103 (142)
Q Consensus 63 L~s~~vfILD~g--~~IyvW~G~~a~~~ek~~a~~~A~~y~~~ 103 (142)
|-++.|=.++.- .++|.|+|.+-..+.+..+ +++..++.
T Consensus 73 lp~~fvPyvE~k~~~~~wqWIGagrDsd~~L~~--LCq~WL~~ 113 (127)
T 3u21_A 73 VPSSFSPFVEFXEXTQQWXLLGQSQDNEXELAA--LFQLWLET 113 (127)
T ss_dssp SCTTCCCSEEEETTTTEEEECC---CCHHHHHH--HHHHHHHH
T ss_pred CCCCCcceeEeccccceEEEecCCCcchHHHHH--HHHHHHhh
Confidence 334444344443 4799999988654444443 35556664
No 33
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.03 E-value=31 Score=22.91 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=6.4
Q ss_pred CeEEEEeCCC
Q psy555 75 EQVFLWLGSK 84 (142)
Q Consensus 75 ~~IyvW~G~~ 84 (142)
+.||||+|.+
T Consensus 70 ~~V~v~lG~g 79 (133)
T 1fxk_C 70 SEVIMSVGAG 79 (133)
T ss_dssp TEEEEEEETT
T ss_pred CEEEEEcCCC
Confidence 4577777764
No 34
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium}
Probab=21.74 E-value=1.1e+02 Score=20.76 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=22.6
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhh
Q psy555 79 LWLGSKCSEVEVKLAYKSALVYIQHL 104 (142)
Q Consensus 79 vW~G~~a~~~ek~~a~~~A~~y~~~~ 104 (142)
+-+|.+++..||..|.++|.+-++..
T Consensus 113 livgtgaseveretaeelakeklraa 138 (179)
T 3fuy_A 113 LIVGTGASEVERETAEELAKEKLRAA 138 (179)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecChhHHhHHHHHHHHHHHHHHH
Confidence 46799999999999999999888753
Done!