RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy555
(142 letters)
>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 99
Score = 142 bits (360), Expect = 3e-45
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 40 FRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALV 99
FRCSNE G+F V E+ +DF QDDL DD+M+LD G++VF+W+GS+ S+ E K A SA
Sbjct: 5 FRCSNESGFFKV-EEISDFSQDDLDTDDIMLLDTGDEVFVWVGSESSDEEKKEALTSAKK 63
Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
YI+ + ++L +G E FT FHAW
Sbjct: 64 YIETDPLGRSKPRTPIYLVKQGNEPPTFTGYFHAWD 99
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain. Gelsolin/severin/villin
homology domain. Calcium-binding and actin-binding. Both
intra- and extracellular domains.
Length = 90
Score = 83.5 bits (207), Expect = 4e-22
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 41 RCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVY 100
KG V F Q L D ILD G ++++W+G K S+ E K A + A+
Sbjct: 1 FLVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVEL 60
Query: 101 IQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
L P ++ + +GKE F F W
Sbjct: 61 DDTLG----PGPVQVRVVDEGKEPPEFWSLFGGW 90
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat.
Length = 76
Score = 55.0 bits (133), Expect = 3e-11
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 57 DFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLF 116
Q+ L D +LD G +FLW+G S E A A R PE +
Sbjct: 9 PLSQESLNSGDCYLLDTGFTIFLWVGKGSSPDEKLFAALLAAQIDLDERFPLPE----VD 64
Query: 117 LTLKGKESRRF 127
++GKE RF
Sbjct: 65 RVVQGKEPARF 75
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 98
Score = 47.6 bits (114), Expect = 4e-08
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 51 VSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQ 102
V+E Q+ L +D ILD G ++F+W+G S E K A K+A +++
Sbjct: 21 VAEGS--LNQEMLDSEDCYILDCGSEIFVWVGKGASLDERKAALKNAEEFLR 70
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in
gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 88
Score = 41.2 bits (97), Expect = 8e-06
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 59 CQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLT 118
L DD+ +LD G ++++W G S+ E+ A A + L + +P +
Sbjct: 21 ASSSLDSDDVFVLDTGSEIYIWQGRASSQAELAAAALLA----KELDEERKGKPEIV-RI 75
Query: 119 LKGKESRRFTKCF 131
+G+E R F F
Sbjct: 76 RQGQEPREFWSLF 88
>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 92
Score = 34.5 bits (80), Expect = 0.003
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 63 LADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAKEPERPRKLFLT--LK 120
L D+ ILD G ++ W GSK + E K A+ Q +R + K+ +
Sbjct: 25 LNSGDVFILDLGSTIYQWNGSKSNRFE-KA---KAMQLAQGIRDERRLGRAKVIVLDEGD 80
Query: 121 GKESRRFTKCF 131
ES F K
Sbjct: 81 TNESPEFWKVL 91
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain
found in gelsolin, severin, villin, and related
proteins. Gelsolin repeats occur in gelsolin, severin,
villin, advillin, villidin, supervillin, flightless,
quail, fragmin, and other proteins, usually in several
copies. They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating
bundles of F-actin with uniform filament polarity,
which is most likely mediated by their extra villin
headpiece domain. Many family members have also adopted
functions in the nucleus, including the regulation of
transcription. Supervillin, gelsolin, and flightless I
are involved in intracellular signaling via nuclear
hormone receptors. The gelsolin-like domain is
distantly related to the actin depolymerizing domains
found in cofilin and similar proteins.
Length = 92
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 63 LADDDMMILDNGEQVFLWLGSKCSEVEVKLAYKSA 97
L +D+ +L V+LW+G SE E +LA A
Sbjct: 28 LNSNDVFVLKTPSSVYLWVGKGSSEDERELAKDVA 62
>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional.
Length = 245
Score = 27.4 bits (61), Expect = 2.7
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 17 QSYASSINKRNQGKVSNLARLFGFRCSNEKGYFT 50
QS + I + G +A F S G+ T
Sbjct: 199 QSIVNQIPMKRLGTPEEIAAAVAFLVSEAAGFIT 232
>gnl|CDD|222040 pfam13311, DUF4080, Protein of unknown function (DUF4080). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 187
Score = 27.2 bits (61), Expect = 2.9
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 100 YIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWSFHKKPPE 142
I+ KE E+ R +G ++++ K H F +
Sbjct: 137 EIREFYLKEEEKLRYYLPEYEGTDAKQLRKMTHLEKFRINVWK 179
>gnl|CDD|235957 PRK07193, fliF, flagellar MS-ring protein; Reviewed.
Length = 552
Score = 27.3 bits (61), Expect = 3.5
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 64 ADDDMMILDNGEQVFLWLGS-----KCSEVEVKLAYKSALVYIQHLRAKEPER 111
A +N LGS S +EVK+ + +Q L EPER
Sbjct: 491 AAAAAPRAENAFSASSLLGSDDLPEPGSGLEVKIEH------LQLLANSEPER 537
>gnl|CDD|173943 cd08184, Fe-ADH3, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Proteins of
this family have not been characterized. Their specific
function is unknown. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to the
iron-containing alcohol dehydrogenase-like superfamily.
They are distinct from other alcohol dehydrogenases
which contain different protein domains. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron or zinc ions. Members of this family are mainly
found in bacteria.
Length = 347
Score = 27.0 bits (60), Expect = 3.8
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 52 SEKCTDFCQDDLADDDMMILDNGEQVFL--WLGSKC---SEVEVKLAYKSALVYIQHLR 105
+EK + C+ DDMM +N +++ + +LG S+V V A L
Sbjct: 207 AEKALELCRQVFLSDDMMSEENDDKLMMASYLGGMSIANSQVGVCHAASYGLSLHLGYH 265
>gnl|CDD|224989 COG2078, AMMECR1, Uncharacterized conserved protein [Function
unknown].
Length = 203
Score = 25.8 bits (57), Expect = 9.7
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 90 VKLAYKSALVYIQHLRAKEPE-------RPRKLFLTLKGKESRR 126
V+LA ++ Y++ + EPE R +F+TL+
Sbjct: 14 VRLAREAIENYLEGGKVIEPEPFPKLFQEKRGVFVTLEKYSPDG 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.425
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,922,595
Number of extensions: 581040
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 14
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)