RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy555
(142 letters)
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 91.3 bits (226), Expect = 2e-25
Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 35 ARLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAY 94
RLF CSN+ G F + E + Q+DLA DD+M+LD +QVF+W+G E E A
Sbjct: 12 PRLF--ACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEAL 69
Query: 95 KSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
SA YI+ A R + + +G E F F W
Sbjct: 70 TSAKRYIETDPANRD-RRTPITVVKQGFEPPSFVGWFLGW 108
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus)
[TaxId: 9796]}
Length = 121
Score = 72.7 bits (178), Expect = 3e-18
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 32 SNLARLFGFRCSNEKGYFTVSEKCTD--FCQDDLADDDMMILDNGE--QVFLWLGSKCSE 87
LA+L+ + SN G VS + F Q L +D ILD+G+ ++F+W G + +
Sbjct: 6 RKLAKLY--KVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANM 63
Query: 88 VEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
E K A K+A +I + + ++ + +G E+ F + F W
Sbjct: 64 EERKAALKTASDFISK---MDYPKQTQVSVLPEGGETPLFRQFFKNW 107
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 70.0 bits (171), Expect = 3e-17
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 32 SNLARLFGFRCSNEKGYFTVSE--KCTDFCQDDLADDDMMILDN--GEQVFLWLGSKCSE 87
+ A L+ + S+ G +++ + F + L DD +LDN ++++W G K +E
Sbjct: 5 AQAAALY--KVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANE 62
Query: 88 VEVKLAYKSALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAW 134
E + A + A +I + ++ + +G+ES F + F W
Sbjct: 63 KERQAALQVAEGFISR---MQYAPNTQVEILPQGRESPIFKQFFKDW 106
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 58.4 bits (141), Expect = 1e-12
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 36 RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
RL+ + KG + D D ILD G+ +F W G K + +E A
Sbjct: 13 RLY--QV---KGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARD 67
Query: 96 SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCFHAWS 135
A +R E + ++ + G+E +
Sbjct: 68 LA----LAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKP 103
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 104
Score = 53.8 bits (129), Expect = 5e-11
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 36 RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
RLF + KG V + + D ILD G + W GS + E A +
Sbjct: 4 RLF--QV---KGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQ 58
Query: 96 SALVYIQHLRAKEPERPRKLFLTLKGKESRRFTKCF 131
+ + +R E ++ ++ +G E +
Sbjct: 59 VS----KGIRDNERSGRARVHVSEEGTEPEAMLQVL 90
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 51.8 bits (124), Expect = 2e-10
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 36 RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
RLF + T + + L +D +L +LW+G+ SE E A +
Sbjct: 5 RLF--QVRANSAGATRAVEV-LPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQE 61
Query: 96 SALVYIQHL-RAKEPERPRKLFLTLKGKE 123
V + E P + L GK
Sbjct: 62 LLRVLRAQPVQVAEGSEPDGFWEALGGKA 90
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum
[TaxId: 44689]}
Length = 102
Score = 49.9 bits (119), Expect = 1e-09
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 36 RLFGFRCSNEKGYFTVSEKCTDFCQDDLADDDMMILDNGEQVFLWLGSKCSEVEVKLAYK 95
RL S +K L D +LD G ++ + GSK S E A +
Sbjct: 5 RLL--HISGDK---NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAE 59
Query: 96 SALVYIQHLRAKEPERPRKLFLTLK-GKESRRFTKCF 131
A + + A+ P+ F K
Sbjct: 60 VA----RAIDAERKGLPKVEVFCETDSDIPAEFWKLL 92
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 32.3 bits (73), Expect = 0.010
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 63 LADDDMMILDNGEQVFLWLGSKCSE 87
+ ++DNG ++FLW+G
Sbjct: 41 FERYGLYLIDNGNELFLWMGGDAVP 65
>d2zfha1 d.58.5.2 (A:63-169) Mammalian CutA-like protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 24.7 bits (54), Expect = 2.9
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 70 ILDNGEQVFLWLGSKCSEVEVKLAYKSALVYIQHLRAK 107
++ ++ W G + EV + K+ + L
Sbjct: 37 LIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDF 74
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 24.5 bits (52), Expect = 6.4
Identities = 8/82 (9%), Positives = 20/82 (24%), Gaps = 5/82 (6%)
Query: 2 TTIIVVAYCWSKGTFQSYASSINKRNQGKVSNLARLFGFRCSNEKGYFTVSEKCTDFCQD 61
T +I + F A ++ + ++ E ++
Sbjct: 34 TILIASGFARRMDHFAGLAEYLSTNGFH-----VFRYDSLHHVGLSSGSIDEFTMTTGKN 88
Query: 62 DLADDDMMILDNGEQVFLWLGS 83
L + G Q + +
Sbjct: 89 SLCTVYHWLQTKGTQNIGLIAA 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.425
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,276
Number of extensions: 21775
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 14
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)