Query psy5550
Match_columns 127
No_of_seqs 106 out of 1364
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 20:25:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.7 6.4E-17 2.2E-21 125.0 9.2 88 38-125 27-120 (510)
2 2rh1_A Beta-2-adrenergic recep 99.7 1.8E-16 6.2E-21 121.9 8.4 86 40-125 37-123 (500)
3 2lnl_A C-X-C chemokine recepto 99.7 3.5E-16 1.2E-20 112.4 9.2 86 39-125 7-92 (296)
4 2ks9_A Substance-P receptor; w 99.7 1.5E-15 5.1E-20 111.6 11.8 88 38-125 27-115 (364)
5 1u19_A Rhodopsin; G protein-co 99.6 1.3E-15 4.4E-20 110.9 11.3 88 38-125 33-121 (349)
6 3odu_A C-X-C chemokine recepto 99.6 3.6E-15 1.2E-19 113.6 9.3 87 38-125 43-129 (502)
7 3uon_A Human M2 muscarinic ace 99.6 5E-15 1.7E-19 111.7 8.4 84 42-125 22-106 (467)
8 3pbl_A D(3) dopamine receptor, 99.6 2.7E-15 9.2E-20 113.7 6.5 83 43-125 38-122 (481)
9 4dkl_A MU-type opioid receptor 99.6 1.1E-14 3.7E-19 109.7 9.6 85 41-125 15-99 (464)
10 4ea3_A Fusion protein of nocic 99.5 2E-14 6.8E-19 108.6 9.0 87 39-125 121-207 (434)
11 4amj_A Beta-1 adrenergic recep 99.5 1.4E-14 4.7E-19 103.8 6.8 86 40-125 8-94 (315)
12 3rze_A Histamine H1 receptor, 99.5 9.5E-15 3.2E-19 109.8 6.1 81 45-125 10-91 (452)
13 2z73_A Rhodopsin; visual pigme 99.5 4.7E-14 1.6E-18 106.6 9.6 88 38-125 29-118 (448)
14 3vw7_A Proteinase-activated re 99.5 3E-14 1E-18 108.0 8.3 88 38-125 15-103 (484)
15 3v2y_A Sphingosine 1-phosphate 99.5 2.4E-14 8.2E-19 110.7 7.7 86 39-125 59-145 (520)
16 3sn6_R Lysozyme, beta-2 adrene 99.5 3.3E-14 1.1E-18 109.5 7.6 87 39-125 178-265 (514)
17 3eml_A Human adenosine A2A rec 99.5 6.8E-14 2.3E-18 105.9 7.1 81 43-125 21-102 (488)
18 4eiy_A Adenosine receptor A2A/ 99.5 2.1E-13 7.2E-18 102.3 9.2 86 38-125 26-112 (447)
19 2lot_A Apelin receptor; membra 97.5 7.2E-06 2.4E-10 46.4 -1.2 30 45-74 30-59 (64)
20 3arc_I Photosystem II reaction 34.6 40 0.0014 16.4 2.5 18 45-62 10-27 (38)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.69 E-value=6.4e-17 Score=124.97 Aligned_cols=88 Identities=20% Similarity=0.364 Sum_probs=73.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHHHh-HHHHHHHHHhc--Cccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQ---TVTNYFLLNLTAADILFCL-SIPGIMYARVS--PQWPLG 111 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~---~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~--~~w~~g 111 (127)
.+....+++.++|.+++++|++||++|++++.++|++| +++|+|++|||++|++.++ .+|+.+...+. +.|++|
T Consensus 27 ~~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g 106 (510)
T 4grv_A 27 TDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFG 106 (510)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhh
Confidence 34556678889999999999999999999998876544 7889999999999999999 99999887654 469999
Q ss_pred ccccccchhhhhhc
Q psy5550 112 DVLCKIMPYSQMCS 125 (127)
Q Consensus 112 ~~~C~~~~~~~~~~ 125 (127)
..+|++..++..++
T Consensus 107 ~~~C~~~~~~~~~~ 120 (510)
T 4grv_A 107 DAGCRGYYFLRDAC 120 (510)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.66 E-value=1.8e-16 Score=121.91 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccc
Q psy5550 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIM 118 (127)
Q Consensus 40 ~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~ 118 (127)
.....++.+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|+.+...+.++|.+|...|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~ 116 (500)
T 2rh1_A 37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW 116 (500)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence 4445578889999999999999999999999999999999999999999999999 999999888888999999999998
Q ss_pred hhhhhhc
Q psy5550 119 PYSQMCS 125 (127)
Q Consensus 119 ~~~~~~~ 125 (127)
.++..++
T Consensus 117 ~~~~~~~ 123 (500)
T 2rh1_A 117 TSIDVLC 123 (500)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 3
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=112.42 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=74.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccc
Q psy5550 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM 118 (127)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~ 118 (127)
....+.+..++|.+++++|++||+++++++.++|++|+++|+|+.|||++|++.++.+|+.+.... ++|..|...|+..
T Consensus 7 ~~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~~-~~~~~~~~~c~~~ 85 (296)
T 2lnl_A 7 ETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKV-NGWIFGTFLCKVV 85 (296)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSCCSSHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhcc-CCCccchhHHHHH
Confidence 344456788899999999999999999999999999999999999999999998887787776665 4699999999999
Q ss_pred hhhhhhc
Q psy5550 119 PYSQMCS 125 (127)
Q Consensus 119 ~~~~~~~ 125 (127)
.++..++
T Consensus 86 ~~~~~~~ 92 (296)
T 2lnl_A 86 SLLKEVN 92 (296)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 8876654
No 4
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.65 E-value=1.5e-15 Score=111.58 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=77.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK 116 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~ 116 (127)
.+.....++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ .+|..+.....++|.+|...|+
T Consensus 27 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 106 (364)
T 2ks9_A 27 QPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCK 106 (364)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHH
Confidence 445555566889999999999999999999999999999999999999999999998 9999888888889999999999
Q ss_pred cchhhhhhc
Q psy5550 117 IMPYSQMCS 125 (127)
Q Consensus 117 ~~~~~~~~~ 125 (127)
+..++..++
T Consensus 107 ~~~~~~~~~ 115 (364)
T 2ks9_A 107 FHNFFPIAA 115 (364)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 988876543
No 5
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.65 E-value=1.3e-15 Score=110.91 Aligned_cols=88 Identities=19% Similarity=0.381 Sum_probs=78.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK 116 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~ 116 (127)
.++....+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ ..|..+.....++|.+|...|+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~ 112 (349)
T 1u19_A 33 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCN 112 (349)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHH
Confidence 345566688889999999999999999999999999999999999999999999999 8999988888889999999999
Q ss_pred cchhhhhhc
Q psy5550 117 IMPYSQMCS 125 (127)
Q Consensus 117 ~~~~~~~~~ 125 (127)
+..++...+
T Consensus 113 ~~~~~~~~~ 121 (349)
T 1u19_A 113 LEGFFATLG 121 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988876543
No 6
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.60 E-value=3.6e-15 Score=113.57 Aligned_cols=87 Identities=26% Similarity=0.477 Sum_probs=76.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccccccccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKI 117 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~ 117 (127)
.......++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++.+|+.+..... +|.+|...|++
T Consensus 43 ~~~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~-~~~~~~~~C~~ 121 (502)
T 3odu_A 43 NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKA 121 (502)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHT-CCCSHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCchhhhh
Confidence 34556668889999999999999999999999999999999999999999999996699998877664 79999999999
Q ss_pred chhhhhhc
Q psy5550 118 MPYSQMCS 125 (127)
Q Consensus 118 ~~~~~~~~ 125 (127)
..++..++
T Consensus 122 ~~~~~~~~ 129 (502)
T 3odu_A 122 VHVIYTVN 129 (502)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876553
No 7
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.58 E-value=5e-15 Score=111.73 Aligned_cols=84 Identities=26% Similarity=0.457 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchh
Q psy5550 42 EMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPY 120 (127)
Q Consensus 42 ~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~ 120 (127)
...+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|..+.....+.|.+|...|++..+
T Consensus 22 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 101 (467)
T 3uon_A 22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLA 101 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHH
Confidence 34578888999999999999999999999999999999999999999999999 99999999988999999999999988
Q ss_pred hhhhc
Q psy5550 121 SQMCS 125 (127)
Q Consensus 121 ~~~~~ 125 (127)
+..++
T Consensus 102 ~~~~~ 106 (467)
T 3uon_A 102 LDYVV 106 (467)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 8
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=113.73 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhc-Ccccccccccccchh
Q psy5550 43 MSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVS-PQWPLGDVLCKIMPY 120 (127)
Q Consensus 43 ~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~-~~w~~g~~~C~~~~~ 120 (127)
..++.+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|..+...+. ++|.+|...|++..+
T Consensus 38 ~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~ 117 (481)
T 3pbl_A 38 HAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVT 117 (481)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHH
Confidence 4466778899999999999999999999999999999999999999999998 99998877766 579999999999988
Q ss_pred hhhhc
Q psy5550 121 SQMCS 125 (127)
Q Consensus 121 ~~~~~ 125 (127)
+..++
T Consensus 118 ~~~~~ 122 (481)
T 3pbl_A 118 LDVMM 122 (481)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 9
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.57 E-value=1.1e-14 Score=109.68 Aligned_cols=85 Identities=26% Similarity=0.499 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccchh
Q psy5550 41 FEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIMPY 120 (127)
Q Consensus 41 ~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~~~ 120 (127)
....++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++.+|+.+.....++|.+|...|++..+
T Consensus 15 ~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 94 (464)
T 4dkl_A 15 VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKIVIS 94 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhHHH
Confidence 44557888999999999999999999999999999999999999999999988899999888888899999999999988
Q ss_pred hhhhc
Q psy5550 121 SQMCS 125 (127)
Q Consensus 121 ~~~~~ 125 (127)
+..++
T Consensus 95 ~~~~~ 99 (464)
T 4dkl_A 95 IDYYN 99 (464)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 10
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=108.58 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccccccccccc
Q psy5550 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLGDVLCKIM 118 (127)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~~~w~~g~~~C~~~ 118 (127)
+.....++.+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++.+|+.+.....+.|.+|...|++.
T Consensus 121 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~~~~~p~~~~~~~~~~~~~~~~~C~~~ 200 (434)
T 4ea3_A 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTV 200 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCcccHHHHH
Confidence 44556678889999999999999999999999999999999999999999999855999999888888999999999999
Q ss_pred hhhhhhc
Q psy5550 119 PYSQMCS 125 (127)
Q Consensus 119 ~~~~~~~ 125 (127)
.++..++
T Consensus 201 ~~~~~~~ 207 (434)
T 4ea3_A 201 IAIDYYN 207 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876554
No 11
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.53 E-value=1.4e-14 Score=103.83 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccc
Q psy5550 40 EFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIM 118 (127)
Q Consensus 40 ~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~ 118 (127)
+....+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ .+|..+.....++|.+|...|++.
T Consensus 8 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 87 (315)
T 4amj_A 8 QQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELW 87 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHH
Confidence 3445578888999999999999999999999999999999999999999999998 999999888888999999999998
Q ss_pred hhhhhhc
Q psy5550 119 PYSQMCS 125 (127)
Q Consensus 119 ~~~~~~~ 125 (127)
.++...+
T Consensus 88 ~~~~~~~ 94 (315)
T 4amj_A 88 TSLDVLC 94 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 12
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.53 E-value=9.5e-15 Score=109.79 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhhhh
Q psy5550 45 AEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQM 123 (127)
Q Consensus 45 ~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~~~ 123 (127)
++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++ .+|..+...+.++|.+|...|++..++..
T Consensus 10 ~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~ 89 (452)
T 3rze_A 10 PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDY 89 (452)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHHH
Confidence 56778899999999999999999999999999999999999999999998 99999999988999999999999988765
Q ss_pred hc
Q psy5550 124 CS 125 (127)
Q Consensus 124 ~~ 125 (127)
++
T Consensus 90 ~~ 91 (452)
T 3rze_A 90 VA 91 (452)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 13
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.52 E-value=4.7e-14 Score=106.58 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=77.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-H-HHHHHHHHhcCccccccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-S-IPGIMYARVSPQWPLGDVLC 115 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~-~p~~~~~~~~~~w~~g~~~C 115 (127)
.......++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ . +|..+.....++|.++...|
T Consensus 29 ~~~~~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C 108 (448)
T 2z73_A 29 VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAAC 108 (448)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHH
Confidence 344556678888999999999999999999999999999999999999999999988 4 89988888888999999999
Q ss_pred ccchhhhhhc
Q psy5550 116 KIMPYSQMCS 125 (127)
Q Consensus 116 ~~~~~~~~~~ 125 (127)
++..++..++
T Consensus 109 ~~~~~~~~~~ 118 (448)
T 2z73_A 109 KVYGFIGGIF 118 (448)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988766543
No 14
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=108.01 Aligned_cols=88 Identities=18% Similarity=0.411 Sum_probs=75.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHhc-Ccccccccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVS-PQWPLGDVLCK 116 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~~~p~~~~~~~~-~~w~~g~~~C~ 116 (127)
++.....++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++.+|+.+...+. ++|.+|...|+
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~ 94 (484)
T 3vw7_A 15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCR 94 (484)
T ss_dssp TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHh
Confidence 34555668899999999999999999999999999999999999999999999997766666555554 48999999999
Q ss_pred cchhhhhhc
Q psy5550 117 IMPYSQMCS 125 (127)
Q Consensus 117 ~~~~~~~~~ 125 (127)
+..++..++
T Consensus 95 ~~~~~~~~~ 103 (484)
T 3vw7_A 95 FVTAAFYCN 103 (484)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876654
No 15
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.52 E-value=2.4e-14 Score=110.71 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCccccccccccc
Q psy5550 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKI 117 (127)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~ 117 (127)
+.....+..+++.+++++|++||++|++++.++|++|++.|+|++|||++|++.++ ..|..+.. ..+.|.++...|++
T Consensus 59 ~~~~~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~ 137 (520)
T 3v2y_A 59 KENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFL 137 (520)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccch
Confidence 34444688899999999999999999999999999999999999999999999999 88877765 45679999999999
Q ss_pred chhhhhhc
Q psy5550 118 MPYSQMCS 125 (127)
Q Consensus 118 ~~~~~~~~ 125 (127)
..++..++
T Consensus 138 ~~~~~~~~ 145 (520)
T 3v2y_A 138 REGSMFVA 145 (520)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 16
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.50 E-value=3.3e-14 Score=109.49 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCccccccccccc
Q psy5550 39 REFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKI 117 (127)
Q Consensus 39 ~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~ 117 (127)
+.....+..+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++ .+|..+...+.++|.+|...|++
T Consensus 178 ~~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~ 257 (514)
T 3sn6_R 178 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF 257 (514)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhh
Confidence 34445578889999999999999999999999999999999999999999999999 99999998888899999999999
Q ss_pred chhhhhhc
Q psy5550 118 MPYSQMCS 125 (127)
Q Consensus 118 ~~~~~~~~ 125 (127)
..++..++
T Consensus 258 ~~~l~~~~ 265 (514)
T 3sn6_R 258 WTSIDVLC 265 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876553
No 17
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.47 E-value=6.8e-14 Score=105.90 Aligned_cols=81 Identities=27% Similarity=0.300 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccccchhh
Q psy5550 43 MSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYS 121 (127)
Q Consensus 43 ~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~~~~~~ 121 (127)
..++.+++.+++++|++||+++++++.+++++|++.|+|++|||++|++.++ .+|+.+.... .|.++...|++..++
T Consensus 21 ~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~C~~~~~~ 98 (488)
T 3eml_A 21 SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGCLFIACF 98 (488)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCEECHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHH
Confidence 3477888999999999999999999999999999999999999999999998 9998887543 688899999999887
Q ss_pred hhhc
Q psy5550 122 QMCS 125 (127)
Q Consensus 122 ~~~~ 125 (127)
..++
T Consensus 99 ~~~~ 102 (488)
T 3eml_A 99 VLVL 102 (488)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 18
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.46 E-value=2.1e-13 Score=102.31 Aligned_cols=86 Identities=26% Similarity=0.269 Sum_probs=74.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHh-HHHHHHHHHhcCcccccccccc
Q psy5550 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL-SIPGIMYARVSPQWPLGDVLCK 116 (127)
Q Consensus 38 ~~~~~~~~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~~~~~~~~l~nla~~Dl~~~~-~~p~~~~~~~~~~w~~g~~~C~ 116 (127)
.+.....+..+++.+++++|++||+++++++.++|++|++.|+|++|||++|++.++ .+|..+... ..|..+...|+
T Consensus 26 ~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~ 103 (447)
T 4eiy_A 26 PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCL 103 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHH
Confidence 445556688889999999999999999999999999999999999999999999998 999887754 36778899999
Q ss_pred cchhhhhhc
Q psy5550 117 IMPYSQMCS 125 (127)
Q Consensus 117 ~~~~~~~~~ 125 (127)
+..++..++
T Consensus 104 ~~~~~~~~~ 112 (447)
T 4eiy_A 104 FIACFVLVL 112 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 19
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=97.50 E-value=7.2e-06 Score=46.43 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy5550 45 AEICLLSIIFILSMGANLFVLITVMWYPAL 74 (127)
Q Consensus 45 ~~~~~~~~i~~~~i~gN~~vl~~~~~~~~~ 74 (127)
+++++|.+++++|++||+++++++.++|--
T Consensus 30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~ 59 (64)
T 2lot_A 30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGH 59 (64)
T ss_dssp SSHHHHHHTTTTTTTSSSSHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeeEeccc
Confidence 778999999999999999999999887753
No 20
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=34.64 E-value=40 Score=16.37 Aligned_cols=18 Identities=6% Similarity=0.292 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5550 45 AEICLLSIIFILSMGANL 62 (127)
Q Consensus 45 ~~~~~~~~i~~~~i~gN~ 62 (127)
...++++.++++|.+.|-
T Consensus 10 ~vV~ffvsLFiFGfLsnD 27 (38)
T 3arc_I 10 IVVTFFVLLFVFGFLSGD 27 (38)
T ss_dssp HHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHccccCCC
Confidence 445556666777766664
Done!