RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5550
(127 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 53.5 bits (129), Expect = 2e-09
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 66 ITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIM-YARVSPQWPLGDVLCKIMPYSQMC 124
+ ++ L+T TN FLLNL AD+LF L++P Y V WP GD LCK++ + +
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 125 S 125
+
Sbjct: 61 N 61
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 52.9 bits (127), Expect = 3e-09
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
I + S IF + N+ V I V+ ++T + +LLNL +D+LF +++P +Y +
Sbjct: 44 IVVYSTIFFFGLVGNIIV-IYVLTKTKIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILF 102
Query: 107 QWPLGDVLCKIM 118
QW G+ CKI+
Sbjct: 103 QWSFGEFACKIV 114
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 46.2 bits (109), Expect = 7e-07
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 52 IIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPLG 111
IIFIL + N + I +++ ++T+T+ ++ NL +D++F + P I+Y QW G
Sbjct: 107 IIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFD-QWIFG 164
Query: 112 DVLCKIMPYS 121
D +CK++ S
Sbjct: 165 DFMCKVISAS 174
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 31.0 bits (70), Expect = 0.12
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSP 106
I ++FI + N+ V I V+ V + +L N+ +D++ S P I++ ++
Sbjct: 32 IVFYILLFIFGLIGNVLV-IAVLIVKRFMFVVDVYLFNIAMSDLMLVFSFPFIIHNDLN- 89
Query: 107 QWPLGDVLCKIM 118
+W G+ +CK++
Sbjct: 90 EWIFGEFMCKLV 101
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 28.4 bits (63), Expect = 0.98
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 32 FYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLN 84
F+ FGN E M A +CL + I + N ++TV YP+ + T + LN
Sbjct: 640 FFLSFGNSESAMIALLCLFGGLSIAAW--NALDVLTVELYPSDKRATAFGFLN 690
>gnl|CDD|192537 pfam10329, DUF2417, Region of unknown function (DUF2417). This is
a region of a family of proteins conserved in fungi some
of whose members also have the Abhydrolase_1, pfam00561,
domain in their sequence. The function of this region is
not known.
Length = 227
Score = 28.0 bits (63), Expect = 1.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 55 ILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGI 99
+L++GANL L L+ V Y L L D++ L++P +
Sbjct: 76 LLAIGANLITLWFFSVPSKLERVLGYVLAVLLLIDLIIILAVPYL 120
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srd is part
of the larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 26.7 bits (60), Expect = 3.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 51 SIIFILSMGANLFVLITVMWY--PALQTVTNYFLLNLTAADILFCLS 95
I FIL + NL +L +++ +L+T LLN I+ C+
Sbjct: 6 PIFFILGLILNLLLLYLIIFKSPKSLRTYR-ILLLNTALTQIISCIL 51
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 25.7 bits (57), Expect = 8.3
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 69 MWYPALQTVTNYFLLNLTAADILFCLSIPGIMYAR 103
W L+ + L IL+ S Y R
Sbjct: 83 TWSATLRMTLLDLVRGLI-NQILYSKSGLSS-YER 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.144 0.468
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,459,557
Number of extensions: 566618
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 44
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)