RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5550
(127 letters)
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 80.6 bits (199), Expect = 4e-19
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 51 SIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQWPL 110
+ + + N V+ ++ + ++T TN ++ NL AD L L++P + WP
Sbjct: 133 LAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPF 192
Query: 111 GDVLCKIMPYSQMCS 125
G+ LCK + +
Sbjct: 193 GNALCKTVIAIDYYN 207
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 79.3 bits (196), Expect = 9e-19
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 28 YFFTFYTEFGNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTA 87
+ +F +++ ++I + S+ N+ V+ ++ + ++TVTNYFL+NL
Sbjct: 17 TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAF 76
Query: 88 ADILFCL-SIPGIMYARVSPQWPLGDVLCKIMPYSQMCS 125
A+ + V +W G CK + + +
Sbjct: 77 AEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAA 115
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 76.2 bits (187), Expect = 1e-17
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIPGIMYARVSPQW 108
L SI+ ++ + N V+ ++ Y ++T TN ++ NL AD L ++P + W
Sbjct: 23 LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTW 82
Query: 109 PLGDVLCKIMPY 120
P G++LCKI+
Sbjct: 83 PFGNILCKIVIS 94
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 72.2 bits (177), Expect = 3e-16
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 38 NREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSIP 97
N F + SIIF+ + N V++ + + L+++T+ + L+L+ AD+LF +++P
Sbjct: 43 NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLP 102
Query: 98 GIMYARVSPQWPLGDVLCKIM 118
V+ W G+ LCK +
Sbjct: 103 FWAVDAVA-NWYFGNFLCKAV 122
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 67.2 bits (164), Expect = 2e-14
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ +P ++
Sbjct: 187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 246
Query: 107 QWPLGDVLCKI 117
W G+ C+
Sbjct: 247 TWTFGNFWCEF 257
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 66.7 bits (162), Expect = 4e-14
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
+ + + ++++ N+ V++++ LQTV NYFL +L AD++ S+ V
Sbjct: 27 VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI 86
Query: 106 PQWPLGDVLCKI 117
WPLG V+C +
Sbjct: 87 GYWPLGPVVCDL 98
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 66.3 bits (161), Expect = 4e-14
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
++S+I + + N+ V+ + + LQTVTNYF+ +L AD++ +P +
Sbjct: 45 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 104
Query: 107 QWPLGDVLCKI 117
W G+ C+
Sbjct: 105 MWTFGNFWCEF 115
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 66.2 bits (161), Expect = 5e-14
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
I + I +L++ N+ V V LQ VTNYF+++L AADI L+IP +S
Sbjct: 35 ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITIS 92
Query: 106 PQWPLGDVLCKIMPYSQ-MCS 125
+ C + + +
Sbjct: 93 TGFCAACHGCLFIACFVLVLT 113
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 65.9 bits (160), Expect = 6e-14
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
I + I +L++ N+ V V LQ VTNYF+++L AADI L+IP +S
Sbjct: 25 ITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITIS 82
Query: 106 PQWPLGDVLCKIM 118
+ C +
Sbjct: 83 TGFCAACHGCLFI 95
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 65.9 bits (160), Expect = 7e-14
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 49 LLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIP-GIMYARVSP 106
+ + + N V + V+ ALQT TNY +++L AD+L L +P +
Sbjct: 44 SYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG 103
Query: 107 QWPLGDVLCKI 117
W + C +
Sbjct: 104 VWNFSRICCDV 114
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 65.5 bits (159), Expect = 7e-14
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 47 ICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVS 105
+ +LS I ++++G NL VL V L TV N ++++L+ AD++ + +P + +
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
Query: 106 PQWPLGDVLCKI 117
+W LG LC
Sbjct: 72 SKWSLGRPLCLF 83
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 63.2 bits (154), Expect = 4e-13
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
+ ++ +L N L + + L+T NY LLNL AD+ +Y +
Sbjct: 43 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 102
Query: 107 QWPLGDVLCKIMPYSQMCS 125
+ G C + +
Sbjct: 103 YFVFGPTGCNLEGFFATLG 121
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 60.3 bits (145), Expect = 5e-12
Identities = 14/82 (17%), Positives = 32/82 (39%)
Query: 37 GNREFEMSAEICLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLSI 96
++E + + +I + N+FVL+T+ YF+ NL +D+L ++
Sbjct: 57 ADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAY 116
Query: 97 PGIMYARVSPQWPLGDVLCKIM 118
+ + + L +
Sbjct: 117 TANLLLSGATTYKLTPAQWFLR 138
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 60.3 bits (146), Expect = 5e-12
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCL--SIPGIMYARVS 105
+ I I+ G N V+ +LQT N F++NL +D F L P + +
Sbjct: 39 IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL 98
Query: 106 PQWPLGDVLCKI 117
+W G CK+
Sbjct: 99 KKWIFGFAACKV 110
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 59.7 bits (145), Expect = 6e-12
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 48 CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILF-CLSIPGIMYARVSP 106
L++++ +L + N+ V+ + LQT+TN F+ +L AD++ L +P V
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 107 QWPLGDVLCKI 117
W G LC++
Sbjct: 76 TWLWGSFLCEL 86
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR
biosynthesis; 2.00A {Streptococcus mutans}
Length = 238
Score = 26.6 bits (59), Expect = 2.5
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 93 CLSIPGIMYARV 104
CLS+ ++ V
Sbjct: 165 CLSVDRVVEGYV 176
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 26.0 bits (58), Expect = 3.7
Identities = 9/12 (75%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLS PGI YA V
Sbjct: 91 CLSFPGI-YAEV 101
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell
cycle, transmembrane, inner membrane; 2.7A {Escherichia
coli}
Length = 220
Score = 25.6 bits (55), Expect = 4.4
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 78 TNYFLLNLTAADILFCLSIPGIMYARVSPQWP 109
+ ++ +P I V QWP
Sbjct: 29 GTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWP 60
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme,
deformylation, structural genomics, PSI, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
d.167.1.1
Length = 176
Score = 25.6 bits (57), Expect = 4.9
Identities = 5/13 (38%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 93 CLSIPGIMYARVS 105
CLS P I + +
Sbjct: 99 CLSFPEI-FVEIE 110
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 25.6 bits (57), Expect = 5.0
Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 1/13 (7%)
Query: 93 CLSIPGIMYARVS 105
CLS PGI +V
Sbjct: 100 CLSFPGI-EGKVE 111
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 25.2 bits (56), Expect = 5.5
Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLSIP A V
Sbjct: 90 CLSIPEQ-RALV 100
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold,
structural genomics; 2.00A {Thermotoga maritima}
Length = 116
Score = 24.8 bits (55), Expect = 5.6
Identities = 2/17 (11%), Positives = 8/17 (47%)
Query: 110 LGDVLCKIMPYSQMCSE 126
+GD++ + + +
Sbjct: 54 IGDMIYDALLVAAVAQR 70
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase;
2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB:
1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Length = 177
Score = 25.2 bits (56), Expect = 5.7
Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 1/13 (7%)
Query: 93 CLSIPGIMYARVS 105
CLS+PG+ V
Sbjct: 101 CLSVPGM-RGYVE 112
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 25.2 bits (56), Expect = 6.3
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLS+PG Y V
Sbjct: 95 CLSVPGF-YEEV 105
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A
{Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A
1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A*
1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A
4al2_A 3k6l_A* 1dff_A 1def_A ...
Length = 168
Score = 25.1 bits (56), Expect = 7.2
Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLSIP A V
Sbjct: 90 CLSIPEQ-RALV 100
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural
genomics, riken STR genomics/proteomics initiative,
RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP:
c.26.1.4 PDB: 1ufv_A
Length = 276
Score = 25.1 bits (56), Expect = 7.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 82 LLNLTAADILFCLSIPGIMY-----ARVSPQWPLGDVLC 115
LL D+LF MY RV + PL +
Sbjct: 76 LLQEAGVDLLFAPG-VEEMYPEGFATRVQVEGPLTALWE 113
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A
{Bacillus cereus} PDB: 1ws1_A*
Length = 156
Score = 24.7 bits (55), Expect = 7.7
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLS PG+ Y V
Sbjct: 90 CLSFPGL-YGEV 100
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 24.8 bits (55), Expect = 7.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 93 CLSIPGIMYARVS 105
CLS+PG+ V
Sbjct: 102 CLSLPGLYSEEVP 114
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 25.0 bits (55), Expect = 7.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 79 NYFLLNLTAADILFCLSIPGIMYARVS 105
NYF + A + + +PG YA V
Sbjct: 69 NYFSVGPAAEPVAHLVDLPGYGYAEVP 95
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation,
hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP:
d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Length = 180
Score = 24.8 bits (55), Expect = 8.5
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLS+PG Y V
Sbjct: 104 CLSVPGF-YENV 114
>3qu1_A Peptide deformylase 2; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding; 1.80A
{Vibrio cholerae}
Length = 171
Score = 24.7 bits (55), Expect = 9.2
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLS+P YA V
Sbjct: 94 CLSVPDY-YADV 104
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus
cereus} PDB: 1lqy_A*
Length = 185
Score = 24.5 bits (54), Expect = 9.4
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 93 CLSIPGIMYARV 104
CLS+ + V
Sbjct: 111 CLSVDREVPGYV 122
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron,
metal-bindi mitochondrion, protein biosynthesis, transit
peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Length = 183
Score = 24.5 bits (54), Expect = 9.5
Identities = 5/12 (41%), Positives = 6/12 (50%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
C S+ G A V
Sbjct: 112 CESVAG-FLACV 122
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae
PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas
oryzae PV}
Length = 171
Score = 24.8 bits (55), Expect = 9.6
Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
Query: 93 CLSIPGIMYARV 104
CLSIPG+ A +
Sbjct: 99 CLSIPGL-RAVI 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.144 0.468
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,944,002
Number of extensions: 99824
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 47
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)