RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5550
         (127 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 48  CLLSIIFILSMGANLFVLITVMWYPALQTVTNYFLLNLTAADILFCLS-IPGIMYARVSP 106
             + ++ +L    N   L   + +  L+T  NY LLNL  AD+          +Y  +  
Sbjct: 42  AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 101

Query: 107 QWPLGDVLCKIMPYSQMC 124
            +  G   C +  +    
Sbjct: 102 YFVFGPTGCNLEGFFATL 119


>d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994
           {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 516

 Score = 24.2 bits (51), Expect = 6.6
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 5   DHESGINTSYVFGIDDKDGWGPRYFFTFYTEFGNREFEMSAEICL 49
           DH    +T+Y F I D +G       + Y  FG+          L
Sbjct: 324 DHNDIGDTTY-FSISDSEGRSVSIIQSNYMGFGSGIVPKGTGFVL 367


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.468 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,409
Number of extensions: 19578
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 6
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.4 bits)