BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5551
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex
pdb|3SI5|B Chain B, Kinetochore-Bubr1 Kinase Complex
Length = 176
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 82/133 (61%)
Query: 37 SREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQD 96
R FE +IR Y G DPL + Y+ W EQ+YP G E+N+ LE + A + ++Y D
Sbjct: 15 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSD 74
Query: 97 PRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156
PR+++L +K PL++Y+ ++++ IG LA FY +WAE +A + ++A+ +FQ G
Sbjct: 75 PRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 134
Query: 157 LNAHAEPIEDLEA 169
+ AEP+E L++
Sbjct: 135 IQQKAEPLERLQS 147
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1
Length = 164
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 82/133 (61%)
Query: 37 SREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQD 96
R FE +IR Y G DPL + Y+ W EQ+YP G E+N+ LE + A + ++Y D
Sbjct: 3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSD 62
Query: 97 PRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156
PR+++L +K PL++Y+ ++++ IG LA FY +WAE +A + ++A+ +FQ G
Sbjct: 63 PRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122
Query: 157 LNAHAEPIEDLEA 169
+ AEP+E L++
Sbjct: 123 IQQKAEPLERLQS 135
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 41 ELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYV 100
E +++Y G DPL Y+QW+E+++P + +I LE + F + ++Y DPR++
Sbjct: 22 EAHMQSYKGNDPLGEWERYIQWVEENFP--ENKEYLITLLEHLMKEFLDKKKYHNDPRFI 79
Query: 101 SLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160
S +K+ + + + +Y+ IGT + Y AWA L+A +++ A+ V Q G+
Sbjct: 80 SYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 139
Query: 161 AEPIEDLE 168
AEP E L+
Sbjct: 140 AEPREFLQ 147
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 41 ELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYV 100
E +++Y G DPL Y+QW+E+++P + +I LE + F + ++Y DPR++
Sbjct: 14 EAHMQSYKGNDPLGEWERYIQWVEENFP--ENKEYLITLLEHLMKEFLDKKKYHNDPRFI 71
Query: 101 SLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160
S +K+ + + + +Y+ IGT + Y AWA L+A +++ A+ V Q G+
Sbjct: 72 SYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131
Query: 161 AEPIEDLE 168
AEP E L+
Sbjct: 132 AEPREFLQ 139
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|F Chain F, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|I Chain I, Crystal Structure Of Mitotic Checkpoint Complex
Length = 223
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 51 DPLQLRFDYVQWLEQSYPCLGPETN-IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT 109
DPLQ+ DY++W ++P +T+ ++ LE F YK D RY+ + ++Y+
Sbjct: 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129
Query: 110 QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPI 164
P+E+++ + +IG + ++FY+ +A ++ ++A+ V+Q G A+P
Sbjct: 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
pdb|3ESL|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
Length = 202
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 48 DGPDPLQLRFDYVQWLEQSYPCLGPETN---IIPFLEETLVAFKNIEQYKQDPRYVSLVI 104
D DPL L DY+ W+ SY + E+ + +E L+ +++E Y+ DPR++ + I
Sbjct: 25 DMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWI 84
Query: 105 KYIGT--QPNPLE---IYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159
YI N E + ++++ IGTKL++FY+ ++++L+ +A + +LG
Sbjct: 85 WYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144
Query: 160 HAEP 163
+ P
Sbjct: 145 NCRP 148
>pdb|3CX6|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
pdb|3CX7|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|B Chain B, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 203
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 70 LGPETNIIP--FLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNP 113
+GPE + P F E+ + F+++E+ K P Y+ + ++YI +Q +P
Sbjct: 4 IGPEEDYDPGYFNNESDIIFQDLEKLKSHPAYLVVFLRYILSQADP 49
>pdb|1T23|A Chain A, Nmr Solution Structure Of The Archaebacterial Chromosomal
Protein Mc1
pdb|2KHL|A Chain A, Refined Solution Structure Of Methanosarcina Thermophila
Protein Mc1
Length = 93
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 95 QDPRYVSLVI--KYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDA 142
+ PR +L + GT+ NP +++ GTK +KAW E++DA
Sbjct: 22 KQPRQAALKAANRGSGTKANP----DIIRLRERGTKKVHVFKAWKEIVDA 67
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 95 QDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAE-------VLDAHNDIK 147
Q P+ +L+ K G + L+ + Y + GTK + W++ V + + K
Sbjct: 156 QGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQGGYEVYVENTQSGQK 215
Query: 148 QANHVFQLGLNAHAEP-----IEDLEAA 170
+H+F++G + P IE +E+A
Sbjct: 216 LYDHLFEVGKEFNVGPGCPNLIERIESA 243
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
pdb|3MDO|B Chain B, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
Length = 389
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 81 EETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVL 140
E+ A KNI++ + ++ +G P E N+ +++ GTK ++ Y W E
Sbjct: 17 EDVHNAIKNIDKGIFPKAFCKIIPDILGGDP---EYCNIXHADGAGTKSSLAYXYWKETG 73
Query: 141 D 141
D
Sbjct: 74 D 74
>pdb|3RQT|A Chain A, 1.5 Angstrom Crystal Structure Of The Complex Of Ligand
Binding Component Of Abc-Type Import System From
Staphylococcus Aureus With Nickel And Two Histidines
Length = 486
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 68 PCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIG- 126
P P + IP+++E + +NIEQ K L+ K T+ +PL+I + Y
Sbjct: 288 PATSPFNDKIPYIKEPKLTKQNIEQAK------XLLAKDGYTKEHPLKIKLITYDGRPEL 341
Query: 127 TKLAMFYKAWAEVLDAHNDIKQANHV 152
+K+A ++ A+ + DIK + +
Sbjct: 342 SKIAQVLQSDAKKANIEIDIKSVDDI 367
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 1 MVYSCSWPVYQ 11
+VYSCSWP YQ
Sbjct: 167 IVYSCSWPAYQ 177
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 88 KNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLV 120
+N+ QY D ++V ++ GTQ PLE+ V
Sbjct: 46 ENVNQYLTDSKFVERTLRLAGTQ--PLEVLEAV 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,968
Number of Sequences: 62578
Number of extensions: 214966
Number of successful extensions: 360
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 17
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)