BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5551
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z1S0|BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Mus
musculus GN=Bub1b PE=1 SV=2
Length = 1052
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 83/139 (59%)
Query: 31 TAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNI 90
TA+ R FE +IR Y G DPL + Y+ W EQ+YP G E+N+ +E + A +
Sbjct: 47 TALQQQKRAFESEIRFYSGDDPLDVWDRYINWTEQNYPQGGKESNMSALVERAIEALQGE 106
Query: 91 EQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150
+Y DPR++SL IK PL++Y+ + S+ IG LA FY +WAE +A + K+A+
Sbjct: 107 TRYYNDPRFLSLWIKLGHLCNEPLDMYSYLQSQGIGVSLAQFYISWAEEYEARENFKKAD 166
Query: 151 HVFQLGLNAHAEPIEDLEA 169
+FQ G+ AEP++ L++
Sbjct: 167 IIFQEGIERKAEPLDRLQS 185
>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
OS=Homo sapiens GN=BUB1B PE=1 SV=3
Length = 1050
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 82/132 (62%)
Query: 38 REFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP 97
R FE +IR Y G DPL + Y+ W EQ+YP G E+N+ LE + A + ++Y DP
Sbjct: 60 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDP 119
Query: 98 RYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157
R+++L +K PL++Y+ ++++ IG LA FY +WAE +A + ++A+ +FQ G+
Sbjct: 120 RFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 179
Query: 158 NAHAEPIEDLEA 169
AEP+E L++
Sbjct: 180 QQKAEPLERLQS 191
>sp|Q54CV5|BUB1_DICDI Probable inactive serine/threonine-protein kinase bub1
OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1
Length = 1306
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 77/135 (57%)
Query: 38 REFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP 97
++FE+ I Y G DP+ Y++W++QSYP + +I LE F + E+YK DP
Sbjct: 45 QKFEIIINEYQGEDPIDNWLKYIKWVQQSYPGGNMKEQLIVLLERCTRLFLSTEKYKNDP 104
Query: 98 RYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157
RY+ + I Y +P+E+++ + + IG L++ Y+A A V + + +QA+ F+ G+
Sbjct: 105 RYLRIWITYADMCRDPIEVFSFLEVQRIGFYLSLLYEARAIVYENKGNYEQADKSFKQGI 164
Query: 158 NAHAEPIEDLEAAQM 172
A+PIE L+ +
Sbjct: 165 ERKAQPIERLQQKHL 179
>sp|O08901|BUB1_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Mus
musculus GN=Bub1 PE=2 SV=1
Length = 1058
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 38 REFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP 97
R FE +++Y G DPL +++W+E+++P + ++ LE + F + + Y D
Sbjct: 9 RMFEAHMQSYTGNDPLGEWESFIKWVEENFP--DNKEYLMTLLEHLMKEFLHKKNYHNDS 66
Query: 98 RYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157
R+++ +K+ + + + +Y++ IGTK + Y +WA L+A +++ A+ +FQ G+
Sbjct: 67 RFINYCLKFAEYNSDRHQFFEFLYNQGIGTKSSYIYMSWAGHLEAQGELQHASAIFQTGI 126
Query: 158 NAHAEPIEDLE 168
+ AEP E L+
Sbjct: 127 HNEAEPKELLQ 137
>sp|O43683|BUB1_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Homo
sapiens GN=BUB1 PE=1 SV=1
Length = 1085
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 40 FELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRY 99
E +++Y G DPL Y+QW+E+++P + +I LE + F + ++Y DPR+
Sbjct: 11 LEAHMQSYKGNDPLGEWERYIQWVEENFP--ENKEYLITLLEHLMKEFLDKKKYHNDPRF 68
Query: 100 VSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159
+S +K+ + + + +Y+ IGT + Y AWA L+A +++ A+ V Q G+
Sbjct: 69 ISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 128
Query: 160 HAEPIEDLE 168
AEP E L+
Sbjct: 129 QAEPREFLQ 137
>sp|O59767|MAD3_SCHPO Mitotic spindle checkpoint component mad3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mad3 PE=1 SV=2
Length = 310
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 51 DPLQLRFDYVQWLEQSYPCLGPETN-IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT 109
DPLQ+ DY++W ++P +T+ ++ LE F YK D RY+ + ++Y+
Sbjct: 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129
Query: 110 QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPI 164
P+E+++ + +IG + ++FY+ +A ++ ++A+ V+Q G A+P
Sbjct: 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184
>sp|P47074|MAD3_YEAST Spindle assembly checkpoint component MAD3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MAD3 PE=1
SV=1
Length = 515
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 51 DPLQLRFDYVQWLEQSYPCLG--PETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIG 108
DP+ L +Y++WL +YP G ++ ++ LE L K++E+Y+ D R++ + YI
Sbjct: 76 DPITLYLEYIKWLNNAYPQGGNSKQSGMLTLLERCLSHLKDLERYRNDVRFLKIWFWYIE 135
Query: 109 --TQPNPLE---IYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163
T+ + +E I+ + IG++LA FY+ + +L + A + QLG+ A P
Sbjct: 136 LFTRNSFMESRDIFMYMLRNGIGSELASFYEEFTNLLIQKEKFQYAVKILQLGIKNKARP 195
Query: 164 IEDLE 168
+ LE
Sbjct: 196 NKVLE 200
>sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1
SV=2
Length = 1021
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 48 DGPDPLQLRFDYVQWLEQSYPCLGPETN---IIPFLEETLVAFKNIEQYKQDPRYVSLVI 104
D DPL L DY+ W+ SY + E+ + +E L+ +++E Y+ DPR++ + I
Sbjct: 53 DMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWI 112
Query: 105 KYIGT--QPNPLEIYNL---VYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159
YI N E N ++++ IGTKL++FY+ ++++L+ +A + +LG
Sbjct: 113 WYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 172
Query: 160 HAEPIEDL 167
+ P L
Sbjct: 173 NCRPYNRL 180
>sp|Q9ES67|ARHGB_RAT Rho guanine nucleotide exchange factor 11 OS=Rattus norvegicus
GN=Arhgef11 PE=1 SV=1
Length = 1527
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 70 LGPETNIIP--FLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ--PNPLEIY 117
+GPE + P F E+ + F+++E+ K P Y+ + ++YI +Q P PL Y
Sbjct: 309 IGPEEDYDPGYFNNESDIIFQDLEKLKSHPAYLVVFLRYILSQADPGPLLFY 360
>sp|O94751|BUB1_SCHPO Checkpoint serine/threonine-protein kinase bub1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bub1 PE=1 SV=1
Length = 1044
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 51 DPLQLRFDYVQWLEQSYPCLGPET------NIIPFLEETLVAFKNIEQYKQDPRYVSLV- 103
DP+ + + ++WL ++ LG ET + I +LE A ++ + L
Sbjct: 48 DPVDVWYRCIEWLLETR-FLGMETVNKMLDDAIQYLERCRFALNDVRHL-----LIQLAK 101
Query: 104 IKYIGTQPNPLE-----IYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158
IK P+ L+ Y L S+ IG +LA+FY+ + +L K+A+ VF ++
Sbjct: 102 IKQSYETPDELQQAAKQFYQLA-SKGIGLELALFYEEYGSLLIRMQRWKEASEVFHAAVS 160
Query: 159 AHAEPI 164
A P+
Sbjct: 161 REARPL 166
>sp|Q9JMQ2|PPAX_BACSU Pyrophosphatase PpaX OS=Bacillus subtilis (strain 168) GN=ppaX PE=1
SV=1
Length = 216
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 82 ETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEI-----YNLVYSENIGTKLAMFYKAW 136
ET+V ++ K DP V L +K +G++P + ++++ +N GTK A AW
Sbjct: 129 ETVVTLDDVTNAKPDPEPVLLALKQLGSEPAEAIMVGDNYHDVLAGKNAGTKTAGV--AW 186
Query: 137 A 137
Sbjct: 187 T 187
>sp|Q6BQ23|SYF1_DEBHA Pre-mRNA-splicing factor SYF1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SYF1 PE=3 SV=2
Length = 850
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 30 FTAICLSSREFELQIRT------------YDGPDPLQLRFDYVQWLEQSYPCLGPETNII 77
FT I S EFE I T D + L LR + + L P L + +
Sbjct: 318 FTMIFDSYTEFEENILTNMSEKLEKLGEDSDLNNELDLRMNVFEKLINDRPYLLNDMMLR 377
Query: 78 PFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT--QPNPLEIYNLVYSENIGTKLAMFYKA 135
+ FK I YK+D ++ Y NPL+ ++L + L +
Sbjct: 378 QDVNNLDEWFKKIVLYKKDSDINMMLDTYAAALRTINPLKAHSLANKKE--NTLPNLWIN 435
Query: 136 WAEVLDAHNDIKQANHVFQLGLNAHAEPIEDL 167
+A V + ND+K AN +F + + + +DL
Sbjct: 436 YANVYASQNDVKTANLIFSKSVKSQFQSPDDL 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,467,624
Number of Sequences: 539616
Number of extensions: 2577873
Number of successful extensions: 4633
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4614
Number of HSP's gapped (non-prelim): 22
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)