Query psy5551
Match_columns 172
No_of_seqs 114 out of 254
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:26:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aez_C MAD3, mitotic spindle c 100.0 5.2E-62 1.8E-66 404.1 19.5 164 8-171 22-191 (223)
2 2wvi_A Mitotic checkpoint seri 100.0 5.9E-59 2E-63 370.4 14.8 136 36-171 2-137 (164)
3 4a1g_A Mitotic checkpoint seri 100.0 2.5E-58 8.7E-63 362.8 15.4 136 34-171 7-142 (152)
4 3esl_A Checkpoint serine/threo 100.0 1.2E-57 4.2E-62 373.0 11.3 143 29-171 4-156 (202)
5 4h7y_A Dual specificity protei 99.4 1.2E-12 4.2E-17 103.1 11.6 111 54-170 14-134 (161)
6 2ond_A Cleavage stimulation fa 97.8 0.0001 3.6E-09 59.7 8.6 97 53-160 8-129 (308)
7 4e6h_A MRNA 3'-END-processing 97.5 0.00054 1.9E-08 63.9 10.5 95 53-159 302-407 (679)
8 4e6h_A MRNA 3'-END-processing 97.1 0.0029 1E-07 58.9 11.0 109 36-159 328-463 (679)
9 2ooe_A Cleavage stimulation fa 96.6 0.019 6.4E-07 49.7 11.4 97 53-160 230-351 (530)
10 2uy1_A Cleavage stimulation fa 96.6 0.013 4.3E-07 52.0 10.1 104 36-156 198-312 (493)
11 2ooe_A Cleavage stimulation fa 96.5 0.018 6.3E-07 49.8 10.4 112 32-159 27-159 (530)
12 2uy1_A Cleavage stimulation fa 96.0 0.042 1.5E-06 48.6 10.3 120 31-159 103-242 (493)
13 2ond_A Cleavage stimulation fa 95.9 0.099 3.4E-06 41.9 11.2 66 97-162 200-273 (308)
14 3edt_B KLC 2, kinesin light ch 87.8 3.9 0.00013 30.3 9.0 84 75-159 19-114 (283)
15 2ho1_A Type 4 fimbrial biogene 85.7 4 0.00014 30.3 8.0 49 112-160 123-171 (252)
16 2lni_A Stress-induced-phosphop 85.3 4.6 0.00016 26.4 7.5 60 100-161 50-115 (133)
17 3k9i_A BH0479 protein; putativ 84.9 2.5 8.5E-05 28.4 6.0 79 77-163 10-94 (117)
18 3ma5_A Tetratricopeptide repea 84.8 1.4 4.8E-05 29.2 4.6 62 96-159 3-70 (100)
19 2kck_A TPR repeat; tetratricop 84.5 2.9 9.8E-05 26.4 5.9 53 111-163 57-110 (112)
20 4i17_A Hypothetical protein; T 83.5 6.3 0.00022 29.1 8.3 115 33-161 23-148 (228)
21 3nf1_A KLC 1, kinesin light ch 83.4 4.1 0.00014 30.8 7.3 83 76-159 130-224 (311)
22 1na0_A Designed protein CTPR3; 83.1 6.9 0.00024 24.9 8.2 49 112-162 61-109 (125)
23 2vyi_A SGTA protein; chaperone 82.7 7.4 0.00025 25.0 8.2 48 112-161 64-111 (131)
24 3edt_B KLC 2, kinesin light ch 82.5 5 0.00017 29.7 7.3 84 75-159 103-198 (283)
25 2fo7_A Synthetic consensus TPR 82.4 6 0.00021 25.4 6.9 110 34-160 18-133 (136)
26 3q15_A PSP28, response regulat 81.9 10 0.00036 30.6 9.6 80 76-159 280-365 (378)
27 3q49_B STIP1 homology and U bo 81.7 6.4 0.00022 26.2 7.1 59 100-160 43-107 (137)
28 3u3w_A Transcriptional activat 80.4 18 0.00063 28.0 11.4 48 112-159 173-225 (293)
29 4gco_A Protein STI-1; structur 80.0 7.3 0.00025 26.9 7.1 47 112-160 65-111 (126)
30 3ulq_A Response regulator aspa 79.7 21 0.00071 28.6 10.7 80 76-159 283-368 (383)
31 2pl2_A Hypothetical conserved 79.4 6 0.00021 29.7 6.9 63 96-161 114-182 (217)
32 2fbn_A 70 kDa peptidylprolyl i 79.3 13 0.00043 27.0 8.5 50 112-163 106-155 (198)
33 3nf1_A KLC 1, kinesin light ch 79.2 7 0.00024 29.5 7.2 83 76-159 88-182 (311)
34 2lur_A Kalata; beta hairpin, p 78.7 0.39 1.3E-05 26.7 -0.1 7 4-10 16-22 (29)
35 2fo7_A Synthetic consensus TPR 78.6 10 0.00036 24.1 7.6 50 112-163 53-102 (136)
36 3as5_A MAMA; tetratricopeptide 78.0 11 0.00037 25.8 7.4 47 112-160 94-140 (186)
37 2dba_A Smooth muscle cell asso 77.5 7.9 0.00027 25.8 6.5 49 112-162 83-131 (148)
38 2vq2_A PILW, putative fimbrial 77.5 7.4 0.00025 27.8 6.6 46 113-160 132-177 (225)
39 3ieg_A DNAJ homolog subfamily 77.2 8.7 0.0003 29.4 7.4 49 111-161 289-337 (359)
40 2kat_A Uncharacterized protein 77.1 4.2 0.00014 26.9 4.9 48 111-160 36-83 (115)
41 2vq2_A PILW, putative fimbrial 76.2 13 0.00044 26.5 7.6 78 76-162 61-145 (225)
42 3as5_A MAMA; tetratricopeptide 76.2 11 0.00039 25.6 7.1 74 76-160 95-174 (186)
43 2xev_A YBGF; tetratricopeptide 75.7 14 0.00048 24.2 7.9 51 112-162 57-108 (129)
44 2ho1_A Type 4 fimbrial biogene 75.6 14 0.00049 27.1 8.0 66 95-162 136-207 (252)
45 3mkr_A Coatomer subunit epsilo 75.1 8.5 0.00029 30.6 7.0 61 100-162 169-232 (291)
46 1hh8_A P67PHOX, NCF-2, neutrop 75.0 15 0.00051 26.4 7.8 78 76-162 56-153 (213)
47 3vtx_A MAMA; tetratricopeptide 73.6 7.1 0.00024 27.7 5.6 47 112-160 125-171 (184)
48 3qky_A Outer membrane assembly 73.4 19 0.00065 27.1 8.4 29 134-162 152-180 (261)
49 3hg3_A Alpha-galactosidase A; 73.0 0.87 3E-05 40.1 0.5 11 1-11 167-177 (404)
50 1xnf_A Lipoprotein NLPI; TPR, 72.9 12 0.0004 27.8 6.9 46 113-160 96-141 (275)
51 3uq3_A Heat shock protein STI1 72.8 21 0.00072 25.9 8.2 119 33-160 21-169 (258)
52 3rkv_A Putative peptidylprolyl 71.7 19 0.00063 25.1 7.5 65 96-162 59-129 (162)
53 1elw_A TPR1-domain of HOP; HOP 71.5 16 0.00055 22.9 8.6 50 112-163 56-105 (118)
54 2q7f_A YRRB protein; TPR, prot 71.5 14 0.00047 26.8 6.9 46 113-160 110-155 (243)
55 3uq3_A Heat shock protein STI1 71.2 23 0.0008 25.6 8.1 66 95-162 134-205 (258)
56 2xcb_A PCRH, regulatory protei 71.2 12 0.00042 25.7 6.3 63 96-160 48-116 (142)
57 3k9i_A BH0479 protein; putativ 70.8 19 0.00065 23.8 7.0 53 111-163 7-60 (117)
58 3gyz_A Chaperone protein IPGC; 70.5 18 0.00063 26.1 7.4 48 112-161 88-135 (151)
59 3ro3_A PINS homolog, G-protein 70.5 20 0.00068 23.6 7.1 82 75-159 67-158 (164)
60 1elr_A TPR2A-domain of HOP; HO 70.2 18 0.00063 23.0 7.6 34 130-163 79-112 (131)
61 3dfg_A Xcrecx, regulatory prot 69.2 13 0.00043 28.1 6.3 53 78-131 49-102 (162)
62 2vyi_A SGTA protein; chaperone 68.9 19 0.00067 22.8 6.8 49 112-162 30-78 (131)
63 3ro3_A PINS homolog, G-protein 67.4 23 0.0008 23.2 7.6 54 91-157 63-116 (164)
64 3e3v_A Regulatory protein RECX 67.1 10 0.00034 29.2 5.5 52 78-130 50-103 (177)
65 3sz7_A HSC70 cochaperone (SGT) 66.9 28 0.00097 24.2 7.6 47 112-160 63-109 (164)
66 2kck_A TPR repeat; tetratricop 66.3 21 0.0007 22.1 6.2 48 113-162 25-72 (112)
67 1a17_A Serine/threonine protei 66.0 15 0.00051 24.9 5.8 47 112-158 99-145 (166)
68 4a1s_A PINS, partner of inscut 65.2 32 0.0011 27.3 8.4 82 76-160 282-373 (411)
69 1na0_A Designed protein CTPR3; 64.8 22 0.00075 22.3 6.1 48 112-161 27-74 (125)
70 3mkr_A Coatomer subunit epsilo 64.6 15 0.00051 29.2 6.3 48 112-159 148-195 (291)
71 4a5x_A MITD1, MIT domain-conta 64.4 11 0.00038 25.8 4.7 32 127-158 13-44 (86)
72 2vgx_A Chaperone SYCD; alterna 64.2 19 0.00064 25.4 6.2 63 96-160 51-119 (148)
73 2xpi_A Anaphase-promoting comp 63.9 14 0.00048 31.2 6.2 65 95-161 510-581 (597)
74 1na3_A Designed protein CTPR2; 63.6 22 0.00075 21.5 5.8 49 111-161 26-74 (91)
75 3c1d_A Protein ORAA, regulator 63.6 17 0.00059 27.1 6.1 53 78-131 47-100 (159)
76 4gcn_A Protein STI-1; structur 63.3 12 0.00041 25.6 4.8 35 129-163 82-116 (127)
77 4eqf_A PEX5-related protein; a 63.3 23 0.00079 27.8 7.1 73 77-160 85-163 (365)
78 2w2u_A Hypothetical P60 katani 63.2 12 0.00042 25.5 4.7 32 128-159 17-48 (83)
79 3u3w_A Transcriptional activat 63.1 50 0.0017 25.5 11.1 81 76-158 174-265 (293)
80 3u4t_A TPR repeat-containing p 62.5 14 0.00048 27.5 5.4 48 111-160 91-138 (272)
81 2r5s_A Uncharacterized protein 62.5 38 0.0013 23.9 7.8 49 113-163 93-141 (176)
82 2v5f_A Prolyl 4-hydroxylase su 62.1 13 0.00043 24.9 4.7 36 125-160 41-76 (104)
83 2kc7_A BFR218_protein; tetratr 61.9 26 0.0009 21.9 6.4 50 112-163 18-68 (99)
84 1a17_A Serine/threonine protei 61.8 33 0.0011 23.0 8.3 49 112-162 65-113 (166)
85 3d5l_A Regulatory protein RECX 61.6 18 0.00061 28.7 6.1 53 78-131 93-147 (221)
86 4gcn_A Protein STI-1; structur 60.9 15 0.00052 25.1 5.0 28 131-158 43-70 (127)
87 3gyz_A Chaperone protein IPGC; 60.9 10 0.00034 27.6 4.2 65 95-161 31-101 (151)
88 1w3b_A UDP-N-acetylglucosamine 60.6 41 0.0014 26.6 8.3 47 111-159 118-164 (388)
89 2v6y_A AAA family ATPase, P60 60.4 15 0.00051 24.9 4.7 31 129-159 10-40 (83)
90 2v6x_A Vacuolar protein sortin 59.9 15 0.00052 24.6 4.7 32 128-159 11-42 (85)
91 1ihg_A Cyclophilin 40; ppiase 59.0 49 0.0017 27.4 8.7 65 95-161 268-338 (370)
92 2vgx_A Chaperone SYCD; alterna 59.0 15 0.00052 25.9 4.9 63 96-160 17-85 (148)
93 3cv0_A Peroxisome targeting si 59.0 33 0.0011 25.8 7.1 48 113-162 225-272 (327)
94 2xpi_A Anaphase-promoting comp 57.8 20 0.00068 30.2 6.1 46 112-159 391-436 (597)
95 2bn5_A PSI; nuclear protein, s 57.6 12 0.0004 21.7 3.1 22 134-155 6-27 (33)
96 2r5s_A Uncharacterized protein 56.7 9.3 0.00032 27.3 3.4 74 77-159 94-173 (176)
97 2y4t_A DNAJ homolog subfamily 56.7 21 0.00071 28.8 5.8 64 96-161 56-125 (450)
98 4gco_A Protein STI-1; structur 56.5 20 0.00068 24.6 5.0 30 130-159 13-42 (126)
99 3u4t_A TPR repeat-containing p 56.3 57 0.0019 24.0 9.0 51 111-161 54-105 (272)
100 2l6j_A TPR repeat-containing p 56.3 19 0.00065 22.7 4.6 48 113-162 23-70 (111)
101 1fch_A Peroxisomal targeting s 56.3 67 0.0023 24.8 10.9 114 32-160 196-315 (368)
102 3upv_A Heat shock protein STI1 56.2 40 0.0014 22.1 8.0 47 112-160 56-102 (126)
103 4h7y_A Dual specificity protei 55.9 15 0.00053 28.5 4.6 58 101-159 14-89 (161)
104 3fp2_A TPR repeat-containing p 55.3 56 0.0019 26.8 8.4 90 76-167 397-499 (537)
105 3upv_A Heat shock protein STI1 54.6 23 0.0008 23.3 5.0 30 131-160 39-68 (126)
106 2gw1_A Mitochondrial precursor 54.4 68 0.0023 25.9 8.7 53 111-165 432-484 (514)
107 4a1s_A PINS, partner of inscut 54.3 38 0.0013 26.8 7.0 81 76-159 242-332 (411)
108 2kat_A Uncharacterized protein 54.2 41 0.0014 21.7 6.9 48 113-162 4-51 (115)
109 2ifu_A Gamma-SNAP; membrane fu 54.2 76 0.0026 24.8 9.1 121 36-160 55-185 (307)
110 4eqf_A PEX5-related protein; a 54.2 75 0.0026 24.7 10.2 113 32-160 192-311 (365)
111 3ly7_A Transcriptional activat 53.9 1E+02 0.0035 26.5 10.1 130 29-163 211-343 (372)
112 2y4t_A DNAJ homolog subfamily 53.9 40 0.0014 27.0 7.1 47 112-160 313-359 (450)
113 1fch_A Peroxisomal targeting s 53.8 31 0.0011 26.8 6.2 47 112-160 235-281 (368)
114 3gw4_A Uncharacterized protein 53.7 54 0.0018 22.9 10.1 121 33-159 42-176 (203)
115 4g1t_A Interferon-induced prot 53.6 44 0.0015 27.1 7.4 85 76-160 70-168 (472)
116 2c2l_A CHIP, carboxy terminus 52.1 81 0.0028 24.5 9.0 47 112-160 56-102 (281)
117 1w3b_A UDP-N-acetylglucosamine 52.0 85 0.0029 24.7 9.4 29 131-159 238-266 (388)
118 1elr_A TPR2A-domain of HOP; HO 52.0 42 0.0014 21.2 5.8 47 112-160 22-68 (131)
119 3ma5_A Tetratricopeptide repea 51.7 26 0.00089 22.7 4.8 32 130-161 7-38 (100)
120 4ga2_A E3 SUMO-protein ligase 51.7 52 0.0018 22.9 6.7 63 96-160 61-130 (150)
121 3vtx_A MAMA; tetratricopeptide 51.3 41 0.0014 23.5 6.1 47 113-161 92-138 (184)
122 1wfd_A Hypothetical protein 15 50.8 25 0.00087 24.2 4.7 31 129-159 14-44 (93)
123 2dl1_A Spartin; SPG20, MIT, st 50.7 23 0.00078 26.0 4.6 34 126-159 18-51 (116)
124 2l6j_A TPR repeat-containing p 50.4 25 0.00084 22.1 4.4 33 130-162 4-36 (111)
125 1xnf_A Lipoprotein NLPI; TPR, 50.3 71 0.0024 23.3 9.4 32 130-161 215-246 (275)
126 2cpt_A SKD1 protein, vacuolar 49.2 23 0.00079 25.6 4.5 32 127-158 15-46 (117)
127 1wao_1 Serine/threonine protei 49.1 44 0.0015 28.7 7.0 62 97-160 37-104 (477)
128 2xcb_A PCRH, regulatory protei 48.8 60 0.002 22.0 7.0 49 111-161 35-83 (142)
129 3ro2_A PINS homolog, G-protein 47.3 69 0.0023 23.7 7.1 82 76-160 242-333 (338)
130 2wzl_A Phosphoprotein; viral p 47.1 4 0.00014 34.5 0.0 46 40-107 77-122 (303)
131 3ro2_A PINS homolog, G-protein 46.6 69 0.0024 23.7 7.0 81 76-159 202-292 (338)
132 2dba_A Smooth muscle cell asso 45.9 37 0.0012 22.3 4.9 33 129-161 64-96 (148)
133 1elw_A TPR1-domain of HOP; HOP 45.9 51 0.0017 20.3 5.5 49 112-162 22-70 (118)
134 3q15_A PSP28, response regulat 45.0 1.1E+02 0.0037 24.4 8.4 47 112-160 240-291 (378)
135 4i17_A Hypothetical protein; T 43.0 92 0.0031 22.5 8.5 50 111-162 59-108 (228)
136 4gyw_A UDP-N-acetylglucosamine 42.8 52 0.0018 30.4 6.8 63 96-160 73-141 (723)
137 2q7f_A YRRB protein; TPR, prot 42.7 89 0.0031 22.2 8.4 49 112-162 177-225 (243)
138 3ulq_A Response regulator aspa 42.7 92 0.0032 24.7 7.6 48 112-159 121-172 (383)
139 3urz_A Uncharacterized protein 42.1 57 0.002 23.8 5.9 48 112-161 72-119 (208)
140 3cv0_A Peroxisome targeting si 42.0 94 0.0032 23.2 7.2 63 98-162 53-121 (327)
141 3gw4_A Uncharacterized protein 40.6 87 0.003 21.7 6.5 34 126-159 62-95 (203)
142 2e2e_A Formate-dependent nitri 40.3 43 0.0015 23.3 4.7 30 132-161 80-112 (177)
143 4abn_A Tetratricopeptide repea 39.8 90 0.0031 26.4 7.5 51 111-161 238-289 (474)
144 1jjz_A Kalata B1; cyclic pepti 39.6 8.4 0.00029 21.7 0.6 6 4-9 21-26 (29)
145 3sz7_A HSC70 cochaperone (SGT) 39.6 81 0.0028 21.7 6.1 49 112-162 29-77 (164)
146 2e2e_A Formate-dependent nitri 39.5 92 0.0031 21.5 9.1 51 111-163 98-148 (177)
147 2pm7_A Protein WEB1, protein t 39.2 54 0.0018 28.4 6.0 102 52-155 225-361 (399)
148 3eab_A Spastin; spastin, MIT, 39.2 23 0.00077 24.9 2.9 34 126-159 12-48 (89)
149 4gyw_A UDP-N-acetylglucosamine 39.1 71 0.0024 29.4 7.1 62 96-159 107-174 (723)
150 3sf4_A G-protein-signaling mod 38.9 1.3E+02 0.0045 23.2 7.8 29 130-158 267-295 (406)
151 3sf4_A G-protein-signaling mod 38.6 1.2E+02 0.0042 23.4 7.6 81 76-159 246-336 (406)
152 4ga2_A E3 SUMO-protein ligase 38.4 73 0.0025 22.1 5.7 80 79-162 12-97 (150)
153 2kvx_A Kalata-B12; plant prote 37.8 8.7 0.0003 21.5 0.4 6 4-9 19-24 (28)
154 3q49_B STIP1 homology and U bo 37.1 84 0.0029 20.4 6.1 48 112-161 27-74 (137)
155 3ieg_A DNAJ homolog subfamily 37.0 1.3E+02 0.0044 22.6 7.3 49 111-161 54-102 (359)
156 2fqa_A Violacin 1, violacin A; 37.0 6.8 0.00023 21.8 -0.1 6 4-9 20-25 (27)
157 2lam_A Cyclotide CTER M; insec 36.8 6.9 0.00024 22.1 -0.1 6 4-9 20-25 (29)
158 2fbn_A 70 kDa peptidylprolyl i 36.4 59 0.002 23.3 5.0 32 129-160 37-68 (198)
159 3qky_A Outer membrane assembly 35.9 52 0.0018 24.6 4.8 50 112-161 70-128 (261)
160 2xev_A YBGF; tetratricopeptide 35.5 67 0.0023 20.6 4.8 50 113-162 21-71 (129)
161 2gw1_A Mitochondrial precursor 34.5 1.1E+02 0.0036 24.7 6.8 49 111-161 56-104 (514)
162 2crb_A Nuclear receptor bindin 34.5 76 0.0026 22.5 5.0 30 128-157 13-42 (97)
163 4abn_A Tetratricopeptide repea 34.1 1.1E+02 0.0036 25.9 7.0 84 76-163 80-170 (474)
164 1na3_A Designed protein CTPR2; 33.8 76 0.0026 18.9 7.2 31 130-160 9-39 (91)
165 2ifu_A Gamma-SNAP; membrane fu 33.4 1.7E+02 0.0057 22.7 8.6 79 76-157 134-222 (307)
166 1yqf_A Hypothetical protein LM 33.0 47 0.0016 26.0 4.2 30 114-143 160-189 (203)
167 3mv2_B Coatomer subunit epsilo 32.5 63 0.0022 27.0 5.2 45 114-160 86-130 (310)
168 3qou_A Protein YBBN; thioredox 31.5 40 0.0014 26.3 3.6 64 97-162 186-251 (287)
169 2q2k_A Hypothetical protein; p 31.5 54 0.0019 21.3 3.5 35 111-145 34-68 (70)
170 3urz_A Uncharacterized protein 31.4 1.5E+02 0.0051 21.5 7.7 32 131-162 55-86 (208)
171 1hh8_A P67PHOX, NCF-2, neutrop 31.2 1.3E+02 0.0043 21.2 6.1 47 112-160 55-101 (213)
172 3jv1_A P22 protein; MAM33 fami 30.9 50 0.0017 25.4 4.0 31 113-143 138-168 (182)
173 3e4h_A VARV peptide F; cycloti 29.8 11 0.00036 21.3 -0.1 8 4-11 16-23 (29)
174 1p32_A Mitochondrial matrix pr 29.8 52 0.0018 25.8 4.0 31 113-143 163-193 (209)
175 1qqe_A Vesicular transport pro 29.8 96 0.0033 23.9 5.6 84 76-162 96-190 (292)
176 2vsy_A XCC0866; transferase, g 29.2 1.2E+02 0.004 25.9 6.5 46 113-160 76-121 (568)
177 1pt4_A Kalata B2; cyclotide, c 28.8 11 0.00038 21.2 -0.1 7 4-10 16-22 (29)
178 2pl2_A Hypothetical conserved 28.5 80 0.0027 23.2 4.7 48 111-160 101-148 (217)
179 1hxi_A PEX5, peroxisome target 28.1 1.3E+02 0.0046 19.9 6.1 63 96-160 47-115 (121)
180 3rkv_A Putative peptidylprolyl 28.0 87 0.003 21.5 4.6 36 126-161 59-94 (162)
181 3qww_A SET and MYND domain-con 27.4 78 0.0027 27.3 5.0 31 128-158 380-410 (433)
182 3qou_A Protein YBBN; thioredox 27.3 1.1E+02 0.0038 23.7 5.6 66 94-159 213-284 (287)
183 2yhc_A BAMD, UPF0169 lipoprote 27.2 1.4E+02 0.0049 21.8 5.9 52 111-162 21-73 (225)
184 3ax2_A Mitochondrial import re 27.1 1.4E+02 0.0048 19.8 5.4 34 135-168 22-55 (73)
185 4ggd_C Mitotic checkpoint seri 27.0 15 0.0005 19.8 0.2 14 8-21 9-22 (26)
186 1qqe_A Vesicular transport pro 26.8 2.1E+02 0.0073 21.8 8.6 32 128-159 75-106 (292)
187 1p5q_A FKBP52, FK506-binding p 26.6 81 0.0028 25.3 4.7 37 127-163 144-180 (336)
188 4g26_A Pentatricopeptide repea 26.5 1.5E+02 0.0051 25.7 6.8 55 110-165 121-175 (501)
189 2lni_A Stress-induced-phosphop 26.5 1.2E+02 0.0043 19.0 6.8 48 112-161 34-81 (133)
190 2hr2_A Hypothetical protein; a 26.4 94 0.0032 23.3 4.8 34 129-162 10-43 (159)
191 4g1t_A Interferon-induced prot 25.1 1E+02 0.0036 24.8 5.2 33 126-158 90-122 (472)
192 2hr2_A Hypothetical protein; a 24.7 1.2E+02 0.004 22.8 5.0 26 134-159 106-131 (159)
193 1xi4_A Clathrin heavy chain; a 24.3 1.3E+02 0.0045 31.1 6.5 88 60-156 988-1075(1630)
194 4g26_A Pentatricopeptide repea 24.0 1.3E+02 0.0043 26.3 5.8 54 111-165 157-210 (501)
195 1bh4_A Circulin A; cyclic pept 23.8 22 0.00076 20.1 0.5 8 3-10 17-24 (30)
196 2c2l_A CHIP, carboxy terminus 23.7 1.3E+02 0.0045 23.2 5.4 48 112-161 22-69 (281)
197 1ihg_A Cyclophilin 40; ppiase 23.7 1.1E+02 0.0036 25.3 5.0 30 129-158 222-251 (370)
198 1p5q_A FKBP52, FK506-binding p 23.5 2.8E+02 0.0095 22.0 9.3 62 99-162 195-262 (336)
199 3ffl_A Anaphase-promoting comp 23.4 1.3E+02 0.0044 23.2 5.0 61 85-158 28-91 (167)
200 2yhc_A BAMD, UPF0169 lipoprote 23.4 1.1E+02 0.0038 22.4 4.7 32 131-162 148-179 (225)
201 2h6f_A Protein farnesyltransfe 23.3 2E+02 0.0069 23.8 6.7 47 113-161 151-197 (382)
202 3n71_A Histone lysine methyltr 22.9 1E+02 0.0035 27.0 5.0 83 75-158 327-421 (490)
203 3mv2_B Coatomer subunit epsilo 22.8 2.1E+02 0.007 23.8 6.6 95 51-157 134-238 (310)
204 2if4_A ATFKBP42; FKBP-like, al 22.1 2.7E+02 0.0092 22.2 7.1 48 111-160 247-294 (338)
205 3qww_A SET and MYND domain-con 21.6 1.1E+02 0.0038 26.3 4.9 36 123-158 330-368 (433)
206 1kt0_A FKBP51, 51 kDa FK506-bi 21.4 1.2E+02 0.0042 25.5 5.0 33 128-160 266-298 (457)
207 4gwp_D Mediator of RNA polymer 21.0 63 0.0022 23.8 2.6 31 61-91 82-119 (121)
208 2h6f_A Protein farnesyltransfe 21.0 2.5E+02 0.0086 23.2 6.9 49 110-160 182-230 (382)
209 2dwk_A Protein RUFY3; RUN doma 20.8 31 0.0011 26.5 1.0 58 82-141 88-145 (180)
210 3qv0_A Mitochondrial acidic pr 20.6 1.1E+02 0.0036 24.8 4.2 31 113-143 183-213 (227)
211 3qwp_A SET and MYND domain-con 20.0 1.3E+02 0.0046 25.6 5.0 31 128-158 369-399 (429)
No 1
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-62 Score=404.07 Aligned_cols=164 Identities=21% Similarity=0.407 Sum_probs=157.3
Q ss_pred cccccccCCCchhhhHHHHhh----hHHHHHHHHHHHHHHHhc-CCCCCChHHHHHHHHHHHHhCCCCC-CCCChHHHHH
Q psy5551 8 PVYQIYSGMTVDLINIEILTY----LFTAICLSSREFELQIRT-YDGPDPLQLRFDYVQWLEQSYPCLG-PETNIIPFLE 81 (172)
Q Consensus 8 pv~~~~sg~~~~~~~~~~~~~----~~~~l~~~r~~fE~~i~~-~~~dDPL~~w~~YI~W~~~~yp~~~-~~s~l~~lLE 81 (172)
||+||++||+|+.|+..+..+ ..+.+.++|++||++|++ ++|||||++|++||+|++++||+|+ ++|+|.+|||
T Consensus 22 NIqPLr~GRs~~~L~~~l~~~~~~~~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLE 101 (223)
T 4aez_C 22 NIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLE 101 (223)
T ss_dssp GCCCCTTCCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHH
T ss_pred hcCcccCCCCHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHH
Confidence 899999999999999998742 346799999999999998 5899999999999999999999987 4889999999
Q ss_pred HHHHHhhcccccccchhHHHHHHHHhhcCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 82 ETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 82 rc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
|||++|+++++|+||+|||||||+||+++++|.+||.||+++|||+++|+||++||.+||.+|+|++|++||++||+++|
T Consensus 102 rc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 102 RCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhc
Q psy5551 162 EPIEDLEAAQ 171 (172)
Q Consensus 162 ~P~~~L~~~h 171 (172)
+|+++|+++|
T Consensus 182 ~P~~rL~~~~ 191 (223)
T 4aez_C 182 KPFLRFQQKY 191 (223)
T ss_dssp BSHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 9999999987
No 2
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=100.00 E-value=5.9e-59 Score=370.44 Aligned_cols=136 Identities=37% Similarity=0.719 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcCCCHHH
Q psy5551 36 SSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLE 115 (172)
Q Consensus 36 ~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp~~ 115 (172)
+|++||++|..|+|||||++|++||+|++++||+|+++|+|.+||||||++|+++++|+||+|||||||+||++++||.+
T Consensus 2 ~r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~~ 81 (164)
T 2wvi_A 2 QKRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPLD 81 (164)
T ss_dssp CTHHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHHH
T ss_pred hHHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHHH
Confidence 58899999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy5551 116 IYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQ 171 (172)
Q Consensus 116 if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~h 171 (172)
||+||+++|||+++|+||++||.++|..|++++|++||++||+++|+|+++|+++|
T Consensus 82 if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 82 MYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp HHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997
No 3
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=100.00 E-value=2.5e-58 Score=362.83 Aligned_cols=136 Identities=29% Similarity=0.577 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcCCCH
Q psy5551 34 CLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNP 113 (172)
Q Consensus 34 ~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp 113 (172)
...|++||++|++|+|||||++|++||+|++++||+|+ ++|.+||||||++|+++++|+||+|||||||+||++++||
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~--~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp 84 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK--EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDL 84 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT--HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCH
Confidence 45789999999999999999999999999999999875 3599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy5551 114 LEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQ 171 (172)
Q Consensus 114 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~h 171 (172)
.+||+||+++|||+++|+||++||.++|.+|++++|++||++||+++|+|+++|+++|
T Consensus 85 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 85 HQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp HHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987
No 4
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-57 Score=372.97 Aligned_cols=143 Identities=24% Similarity=0.525 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHHHhc--CCCCCChHHHHHHHHHHHHhCCCCCC--CCChH-HHHHHHHHHhhcccccccchhHHHHH
Q psy5551 29 LFTAICLSSREFELQIRT--YDGPDPLQLRFDYVQWLEQSYPCLGP--ETNII-PFLEETLVAFKNIEQYKQDPRYVSLV 103 (172)
Q Consensus 29 ~~~~l~~~r~~fE~~i~~--~~~dDPL~~w~~YI~W~~~~yp~~~~--~s~l~-~lLErc~~~f~~~e~Y~nD~RyLkiW 103 (172)
..++|+++|++||++|.+ ++|||||++|++||+|++++||+|++ +|+|. ++|||||++|+++++|+||+||||||
T Consensus 4 ~~~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklW 83 (202)
T 3esl_A 4 QHSQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIW 83 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHH
Confidence 347899999999999998 99999999999999999999999885 78999 99999999999999999999999999
Q ss_pred HHHhhc--CC---CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHhc
Q psy5551 104 IKYIGT--QP---NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAAQ 171 (172)
Q Consensus 104 i~Ya~~--~~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~h 171 (172)
|+||++ ++ +|.+||.||+++|||+++|+||++||.+||.+|++++|++||++||+++|+|+++|+++|
T Consensus 84 l~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 84 IWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 999999 67 999999999999999999999999999999999999999999999999999999999987
No 5
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.43 E-value=1.2e-12 Score=103.08 Aligned_cols=111 Identities=16% Similarity=0.290 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhCCCCCCC-----CChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC-----CCHHHHHHHHHHC
Q psy5551 54 QLRFDYVQWLEQSYPCLGPE-----TNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ-----PNPLEIYNLVYSE 123 (172)
Q Consensus 54 ~~w~~YI~W~~~~yp~~~~~-----s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~-----~dp~~if~~L~~~ 123 (172)
|.|+.|+.=+|.+ |.+. ..+.++.||++....-.. ++...||+.|||.||.+. ++++++|+.+.+.
T Consensus 14 d~W~~yl~llE~~---g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKN---SVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp HHHHHHHHHHHHH---TCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7899999999986 3332 356778888888877774 999999999999999873 4579999999885
Q ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHHh
Q psy5551 124 NIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLEAA 170 (172)
Q Consensus 124 ~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~ 170 (172)
+.++|.+|+.||++-.++|+...|.+|+.+||-.+|.|.+.|+.|
T Consensus 90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999865
No 6
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.75 E-value=0.0001 Score=59.75 Aligned_cols=97 Identities=14% Similarity=0.225 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC-----------------
Q psy5551 53 LQLRFDYVQWLEQSYPCLGPET-----NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ----------------- 110 (172)
Q Consensus 53 L~~w~~YI~W~~~~yp~~~~~s-----~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~----------------- 110 (172)
+..|..||+|-.+ -|.+.... ....++++++.. +|.+..+|+.|+...
T Consensus 8 ~~~W~~yi~~E~~-~~~~~~~~~~~~~~a~~~~~~al~~---------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~ 77 (308)
T 2ond_A 8 VDMWKKYIQWEKS-NPLRTEDQTLITKRVMFAYEQCLLV---------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 77 (308)
T ss_dssp HHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHHHHHHHHH---------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHh-CcccCCchHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHhchhhhhccchhhcc
Confidence 5789999999444 45433221 223466666654 577788888888653
Q ss_pred ---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 ---PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++.++|.-.... +....+..|..++.+++..|++++|.++|+++++..
T Consensus 78 ~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 129 (308)
T 2ond_A 78 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129 (308)
T ss_dssp HHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred cchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence 2345555554442 345667788888999999999999999999988754
No 7
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.49 E-value=0.00054 Score=63.87 Aligned_cols=95 Identities=7% Similarity=0.067 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCCC----ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHH-HHHHHHH
Q psy5551 53 LQLRFDYVQWLEQSYPCLGPET----NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPL-EIYNLVY 121 (172)
Q Consensus 53 L~~w~~YI~W~~~~yp~~~~~s----~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~-~if~~L~ 121 (172)
+..|..||.|-++ -|.+-... -+..++|+|+..+.. +=++|+.||++. +++. +||.--.
T Consensus 302 l~lW~~yi~fEk~-~~~~l~~~~~~~Rv~~~Ye~aL~~~p~---------~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 302 LLIWLEWIRWESD-NKLELSDDLHKARMTYVYMQAAQHVCF---------APEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp HHHHHHHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCccccchhhHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7899999999654 44332111 135689999988654 679999999874 3464 8876654
Q ss_pred HCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 122 SENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 122 ~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
. ..-+...+|..||.+.|..|++++|.+||+..+..
T Consensus 372 ~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 372 Q--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp H--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 23356789999999999999999999999999974
No 8
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.13 E-value=0.0029 Score=58.94 Aligned_cols=109 Identities=10% Similarity=0.087 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhhcccccccchhHHHHHHHHhhcC----
Q psy5551 36 SSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNII-PFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ---- 110 (172)
Q Consensus 36 ~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~-~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~---- 110 (172)
.+..||+.|..... + =+.|++|++|.+.. |.. .... .+|+|++..+-. -..||+.||++.
T Consensus 328 v~~~Ye~aL~~~p~-~-~~lW~~ya~~~~~~---~~~-~~a~r~il~rAi~~~P~---------s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 328 MTYVYMQAAQHVCF-A-PEIWFNMANYQGEK---NTD-STVITKYLKLGQQCIPN---------SAVLAFSLSEQYELNT 392 (679)
T ss_dssp HHHHHHHHHHHTTT-C-HHHHHHHHHHHHHH---SCC-TTHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-C-HHHHHHHHHHHHhc---CcH-HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhC
Confidence 45679998876332 3 38999999999864 222 2444 999999976533 368999999873
Q ss_pred --CCHHHHHHHHHHCC----------cch----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 111 --PNPLEIYNLVYSEN----------IGT----------KLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 111 --~dp~~if~~L~~~~----------IG~----------~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
+.+++||.-+.... +.+ ..+..|..++.+....|+.+.|.+||.++++.
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34788888877631 211 46778999999999999999999999999986
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.63 E-value=0.019 Score=49.74 Aligned_cols=97 Identities=14% Similarity=0.256 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcCC----------------
Q psy5551 53 LQLRFDYVQWLEQSYPCLGPET-----NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQP---------------- 111 (172)
Q Consensus 53 L~~w~~YI~W~~~~yp~~~~~s-----~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~---------------- 111 (172)
+..|..||.|-..+ |.+..+. ....++++|+..+ |.+..+|+.|+.+..
T Consensus 230 ~~~w~~~~~~e~~~-~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 230 VDMWKKYIQWEKSN-PLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp HHHHHHHHHHHHHC-SSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHcC-CccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 68999999996653 3221111 3456888888764 344678888887632
Q ss_pred ----CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 ----NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 ----dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.++|.--.. .+-...+..|..+|.+++..|++++|.++|+++++..
T Consensus 300 ~~~~~A~~~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 300 LFSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHTT-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred hhhHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 23555554443 1334567788888888888888888888888888754
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.57 E-value=0.013 Score=51.96 Aligned_cols=104 Identities=9% Similarity=0.029 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcCCCHHH
Q psy5551 36 SSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLE 115 (172)
Q Consensus 36 ~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp~~ 115 (172)
.+..||+.|.... ..-+.|+.|++|..+. |. -.....+++|++.. ..+. .+|+.|+..... .+
T Consensus 198 v~~~ye~al~~~p--~~~~lW~~ya~~~~~~---~~-~~~ar~i~erAi~~-P~~~---------~l~~~y~~~~e~-~~ 260 (493)
T 2uy1_A 198 MHFIHNYILDSFY--YAEEVYFFYSEYLIGI---GQ-KEKAKKVVERGIEM-SDGM---------FLSLYYGLVMDE-EA 260 (493)
T ss_dssp HHHHHHHHHHHTT--TCHHHHHHHHHHHHHT---TC-HHHHHHHHHHHHHH-CCSS---------HHHHHHHHHTTC-TH
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHHc---CC-HHHHHHHHHHHHhC-CCcH---------HHHHHHHhhcch-hH
Confidence 4567888776532 2268999999998762 22 23568899999987 3321 356666654211 12
Q ss_pred HHHHHHHCC-----------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy5551 116 IYNLVYSEN-----------IGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156 (172)
Q Consensus 116 if~~L~~~~-----------IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~G 156 (172)
+|.-+++.- .+......|..|+.+++..+..+.|.+||.++
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 233333321 23344455666666655555566666666555
No 11
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.49 E-value=0.018 Score=49.82 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC-
Q psy5551 32 AICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ- 110 (172)
Q Consensus 32 ~l~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~- 110 (172)
++.+.|..||+.+..... --..|..|+.+.... |.-.....+++||+... | -+.+|+.|+++.
T Consensus 27 ~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~----~~~~~a~~~~~ral~~~---------p-~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKA----KNYDKVEKLFQRCLMKV---------L-HIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTTC---------C-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcC---------C-ChHHHHHHHHHHH
Confidence 466778899999876432 357899999997642 22235678888888652 2 155899999642
Q ss_pred ------CCHHH----HHHHHHHC-CcchHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHc
Q psy5551 111 ------PNPLE----IYNLVYSE-NIGTKLAMFYKAWAEVLDA---------HNDIKQANHVFQLGLNA 159 (172)
Q Consensus 111 ------~dp~~----if~~L~~~-~IG~~~AlfYe~wA~~lE~---------~~~~~~A~~I~~~Gi~~ 159 (172)
+++++ +|...... |.-.....+|..++.++.. .|++++|..+|+++++.
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 34555 66655432 3223457899999998876 79999999999999984
No 12
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.00 E-value=0.042 Score=48.56 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH-------hhcccccccchhHHHHH
Q psy5551 31 TAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVA-------FKNIEQYKQDPRYVSLV 103 (172)
Q Consensus 31 ~~l~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~-------f~~~e~Y~nD~RyLkiW 103 (172)
.++...|.-|+..|... ..+==..|.+|+.|....-+. .-..++.+.... +......-++ .=+++|
T Consensus 103 ~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~-----~~~~~~~~~~~~y~~ar~~y~~~~~~~~~-~s~~~W 175 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKI-----TGKKIVGDTLPIFQSSFQRYQQIQPLIRG-WSVKNA 175 (493)
T ss_dssp HHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSHHHH
T ss_pred HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccc-----cHHHHHHHHhHHHHHHHHHHHHHHHHHhh-ccHHHH
Confidence 45677899999999853 222247899999997652211 011222221111 1111010000 024699
Q ss_pred HHHhhcC-CCH------------HHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 104 IKYIGTQ-PNP------------LEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 104 i~Ya~~~-~dp------------~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
..|+++. ++| ..+|....... ...+.+|..+|.+++..|+.++|..||.+|+..
T Consensus 176 ~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 176 ARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999984 332 24565555432 344899999999999999999999999999998
No 13
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.88 E-value=0.099 Score=41.92 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhcC------CCHHHHHHHHHHCC-cch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 97 PRYVSLVIKYIGTQ------PNPLEIYNLVYSEN-IGT-KLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 97 ~RyLkiWi~Ya~~~------~dp~~if~~L~~~~-IG~-~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
|....+|+.|+++. ++++.+|....... +.. ....+|..|+.++...|++.+|..+++++++....
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 33467788888763 23678888877763 443 47788888888888889999999999888876543
No 14
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.85 E-value=3.9 Score=30.30 Aligned_cols=84 Identities=11% Similarity=0.136 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHHC------CcchHHHHHHHHHHHHHHH
Q psy5551 75 NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSE------NIGTKLAMFYKAWAEVLDA 142 (172)
Q Consensus 75 ~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~ 142 (172)
.=..++++++..+..... .+++....+|...+... +++.+.|...... +-....+..|...|..+..
T Consensus 19 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SHHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 457888888888765432 34577778887777652 3466666665543 2235677888999999999
Q ss_pred cCCHHHHHHHHHHHHHc
Q psy5551 143 HNDIKQANHVFQLGLNA 159 (172)
Q Consensus 143 ~~~~~~A~~I~~~Gi~~ 159 (172)
.|++++|...|++++..
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEI 114 (283)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 99999999999999976
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=85.75 E-value=4 Score=30.30 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.++|.-+...+.....+..|...|..+...|++++|...|+.++...
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566666665544555566777777777777777777777777777654
No 16
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=85.32 E-value=4.6 Score=26.38 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 100 VSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 100 LkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
..+|...+... +++...|..... +....+..|...|..+...|++++|.+.|+.++....
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQ--LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 45555555432 235666666555 3445677888899999999999999999999998653
No 17
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=84.90 E-value=2.5 Score=28.41 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHH
Q psy5551 77 IPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150 (172)
Q Consensus 77 ~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~ 150 (172)
...+++++... .+||....+|+..+... +++.+.|.-.....-. .+..|...+..+...|++++|.
T Consensus 10 ~~~~~~al~~~------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 10 VPYYEKAIASG------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp HHHHHHHHSSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcC------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCCHHHHH
Confidence 56666666521 23788888888887652 3477777777765444 4667777899999999999999
Q ss_pred HHHHHHHHcCCCc
Q psy5551 151 HVFQLGLNAHAEP 163 (172)
Q Consensus 151 ~I~~~Gi~~~A~P 163 (172)
..|++++......
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 9999999875443
No 18
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=84.85 E-value=1.4 Score=29.23 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=43.5
Q ss_pred chhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 96 DPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 96 D~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
||....+|...+... +++.+.|.-..... ...+..|...|..+...|++++|.+.|++++..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666542 34677777766544 344556777889999999999999999999964
No 19
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=84.47 E-value=2.9 Score=26.44 Aligned_cols=53 Identities=15% Similarity=0.025 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCc
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAH-NDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~-~~~~~A~~I~~~Gi~~~A~P 163 (172)
+++.+.|.......-....+..|...|..+... |++++|.+.++.++.....+
T Consensus 57 ~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 57 EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 356777777776544422567788889999999 99999999999999876543
No 20
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=83.47 E-value=6.3 Score=29.08 Aligned_cols=115 Identities=7% Similarity=0.134 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC--
Q psy5551 33 ICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ-- 110 (172)
Q Consensus 33 l~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~-- 110 (172)
..+....|+..|......|+ ..|.. +-.+.. ..|.-..-...+++++ ..+|....+|...+...
T Consensus 23 ~~~A~~~~~~al~~~~~~~~-~~~~~-~~~~~~---~~~~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 23 YAVAFEKYSEYLKLTNNQDS-VTAYN-CGVCAD---NIKKYKEAADYFDIAI---------KKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHHHHTTTCCH-HHHHH-HHHHHH---HTTCHHHHHHHHHHHH---------HTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCc-HHHHH-HHHHHH---HhhcHHHHHHHHHHHH---------HhCcchHHHHHHHHHHHHH
Confidence 44556667777765543444 22222 222221 1121112344445554 23555667777766542
Q ss_pred ----CCHHHHHHHHHHCCcchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 ----PNPLEIYNLVYSENIGTK-----LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ----~dp~~if~~L~~~~IG~~-----~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++.+.|.-.....-... ++..|..-+..+...|++++|...|+++++...
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 346777777666443333 457788999999999999999999999998743
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=83.44 E-value=4.1 Score=30.83 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHHC------CcchHHHHHHHHHHHHHHHc
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSE------NIGTKLAMFYKAWAEVLDAH 143 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~ 143 (172)
-...+++++..+.... =.+++....+|...+... +++.+.|.-.... +-....+..|...|..+...
T Consensus 130 A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 208 (311)
T 3nf1_A 130 AEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208 (311)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 4556666665543220 034567777777777652 2466677666554 33566778899999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q psy5551 144 NDIKQANHVFQLGLNA 159 (172)
Q Consensus 144 ~~~~~A~~I~~~Gi~~ 159 (172)
|++++|...|+.++..
T Consensus 209 g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 209 GKFKQAETLYKEILTR 224 (311)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999974
No 22
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=83.11 E-value=6.9 Score=24.91 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++..+|.-+.... ...+..+...|..+...|++++|...|+.++.....
T Consensus 61 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 61 EAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4667777766543 334566778899999999999999999999987543
No 23
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=82.70 E-value=7.4 Score=24.98 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++.+.|...... ....+..|...|..+...|++++|...|+.++....
T Consensus 64 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 64 GAVQDCERAICI--DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhc--CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 456666666654 344466778889999999999999999999998754
No 24
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=82.45 E-value=5 Score=29.69 Aligned_cols=84 Identities=11% Similarity=0.008 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHHC------CcchHHHHHHHHHHHHHHH
Q psy5551 75 NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSE------NIGTKLAMFYKAWAEVLDA 142 (172)
Q Consensus 75 ~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~ 142 (172)
.-...+++++..+.... -.+++....++...+... +++.+.|.-.... +-....+..|...|..+..
T Consensus 103 ~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 103 EAEPLCKRALEIREKVL-GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34667777776654321 134577788887777653 2366667666654 2255678889999999999
Q ss_pred cCCHHHHHHHHHHHHHc
Q psy5551 143 HNDIKQANHVFQLGLNA 159 (172)
Q Consensus 143 ~~~~~~A~~I~~~Gi~~ 159 (172)
.|++++|...|+.++..
T Consensus 182 ~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 182 QGKYQDAETLYKEILTR 198 (283)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999999974
No 25
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=82.38 E-value=6 Score=25.36 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC---
Q psy5551 34 CLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ--- 110 (172)
Q Consensus 34 ~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~--- 110 (172)
.+....|+..+... .+....|.....-... . +.-..-..++++++... +....+|..++...
T Consensus 18 ~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~---~-~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 18 DEAIEYYQKALELD--PRSAEAWYNLGNAYYK---Q-GDYDEAIEYYQKALELD---------PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH---H-TCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC--CcchhHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHC---------CCchHHHHHHHHHHHHh
Confidence 34455566655442 2234455443332221 1 11112355566665442 22334555555432
Q ss_pred ---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 ---PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++.++|..+.... ......+...|..+...|++++|...|+.++...
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 23566777666543 3345567778999999999999999999998754
No 26
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.89 E-value=10 Score=30.56 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc---CCC---HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT---QPN---PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQA 149 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~---~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A 149 (172)
-...+++++...... +|+.+.......... ..+ ..+...++...+.-...+..+...|..+...|++++|
T Consensus 280 A~~~~~~al~~~~~~----~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 280 AFQFIEEGLDHITAR----SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp HHHHHHHHHHHCCTT----CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 466677777665442 344444433333322 233 6677778888888888889999999999999999999
Q ss_pred HHHHHHHHHc
Q psy5551 150 NHVFQLGLNA 159 (172)
Q Consensus 150 ~~I~~~Gi~~ 159 (172)
...|++++..
T Consensus 356 ~~~~~~al~~ 365 (378)
T 3q15_A 356 AAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 27
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=81.68 E-value=6.4 Score=26.23 Aligned_cols=59 Identities=5% Similarity=-0.139 Sum_probs=42.7
Q ss_pred HHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 100 VSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 100 LkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
..+|...+.. .+++...|.-... +....+..|...|..+...|++++|...|+.++...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 4455555543 2346666666655 445567788889999999999999999999998753
No 28
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=80.40 E-value=18 Score=28.03 Aligned_cols=48 Identities=4% Similarity=0.007 Sum_probs=37.8
Q ss_pred CHHHHHHHHHH----C-CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 112 NPLEIYNLVYS----E-NIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 112 dp~~if~~L~~----~-~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
.+.+.|..... . +.-...+..|-..+..+...|+|++|...+++|+.-
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 173 KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 46666666552 2 445567778899999999999999999999999963
No 29
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.03 E-value=7.3 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|..... +....+..|...|..+...|++++|...|+++++-.
T Consensus 65 ~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 65 RALDDCDTCIR--LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH--hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 45566655554 455667778889999999999999999999999865
No 30
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=79.65 E-value=21 Score=28.63 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc---CCC---HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT---QPN---PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQA 149 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~---~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A 149 (172)
-...+++++...... +|+.+...+...+.. ..+ ..+...++...+.-...+..|...|.++...|++++|
T Consensus 283 A~~~~~~al~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A 358 (383)
T 3ulq_A 283 AHEYHSKGMAYSQKA----GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKA 358 (383)
T ss_dssp HHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 355566666554432 345444432223322 233 5667777777888888899999999999999999999
Q ss_pred HHHHHHHHHc
Q psy5551 150 NHVFQLGLNA 159 (172)
Q Consensus 150 ~~I~~~Gi~~ 159 (172)
...|++++.-
T Consensus 359 ~~~~~~al~~ 368 (383)
T 3ulq_A 359 SAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=79.40 E-value=6 Score=29.65 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=49.1
Q ss_pred chhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 96 DPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 96 D~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
||.....|...+.. .+++.+.|.-..... ..+..+...|..+...|++++|...|++.++...
T Consensus 114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666677666654 245788888877766 5667778899999999999999999999998653
No 32
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=79.29 E-value=13 Score=27.01 Aligned_cols=50 Identities=4% Similarity=-0.097 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
++...|...... ....+..|...|..+...|++++|...|++++......
T Consensus 106 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 106 KAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 455556555543 44556677788999999999999999999999875433
No 33
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=79.22 E-value=7 Score=29.51 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHHC------CcchHHHHHHHHHHHHHHHc
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSE------NIGTKLAMFYKAWAEVLDAH 143 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~ 143 (172)
-...+++++..+..... .+++....++...+... +++.+.|.-.... +--...+..|...|..+...
T Consensus 88 A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 88 AANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 45666777766543211 44566777777766652 2356666655543 22356778889999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q psy5551 144 NDIKQANHVFQLGLNA 159 (172)
Q Consensus 144 ~~~~~A~~I~~~Gi~~ 159 (172)
|++++|...|++++..
T Consensus 167 ~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEI 182 (311)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999886
No 34
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=78.66 E-value=0.39 Score=26.72 Aligned_cols=7 Identities=71% Similarity=1.896 Sum_probs=5.9
Q ss_pred ccccccc
Q psy5551 4 SCSWPVY 10 (172)
Q Consensus 4 ~~~~pv~ 10 (172)
.|||||-
T Consensus 16 ~cswpvc 22 (29)
T 2lur_A 16 TCSWPVC 22 (29)
T ss_dssp EEETTEE
T ss_pred EecCccc
Confidence 5999985
No 35
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=78.55 E-value=10 Score=24.13 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
++.++|.-+.... ...+..|...+..+...|++++|..+++.++......
T Consensus 53 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 53 EAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHC--CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4666777666543 3445567778999999999999999999999876443
No 36
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=77.96 E-value=11 Score=25.79 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|.-+... ....+..+...|..+...|++++|..+|+.++...
T Consensus 94 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 94 LAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 355555555543 23345566667777777888888888888777764
No 37
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.52 E-value=7.9 Score=25.80 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++.+.|....... ...+..|...|..+...|++++|...|+.++.....
T Consensus 83 ~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 83 KAETEASKAIEKD--GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHT--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhhC--ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3455555554432 334566778889999999999999999999987643
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=77.50 E-value=7.4 Score=27.77 Aligned_cols=46 Identities=9% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+.+.|..+... .......+...|..+...|++++|..+|+.++...
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45555555443 23335566667777777777777777777777654
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=77.22 E-value=8.7 Score=29.45 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++.++|.-.... ....+..|...|..+...|++++|...|+.+++...
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 289 VEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3577777777764 445577888999999999999999999999998753
No 40
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=77.12 E-value=4.2 Score=26.86 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++...|...... ....+..|...|..+...|++++|...|+.++...
T Consensus 36 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 36 DAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3466777766653 44556778889999999999999999999998753
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.24 E-value=13 Score=26.46 Aligned_cols=78 Identities=6% Similarity=-0.002 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc---C----CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT---Q----PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQ 148 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~---~----~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 148 (172)
-...+++++....+ ...+|...+.. . +++.+.|.-+...+.....+..|...|..+...|++++
T Consensus 61 A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 61 AQESFRQALSIKPD---------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHHHHHHHHHCTT---------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCC---------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 45667777665322 22334433332 2 34677888877743445557788889999999999999
Q ss_pred HHHHHHHHHHcCCC
Q psy5551 149 ANHVFQLGLNAHAE 162 (172)
Q Consensus 149 A~~I~~~Gi~~~A~ 162 (172)
|...|+.+++....
T Consensus 132 A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987543
No 42
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=76.22 E-value=11 Score=25.64 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQA 149 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A 149 (172)
-...+++++....+ + ..+|...+.. .+++.++|....... ......|...|..+...|++++|
T Consensus 95 A~~~~~~~~~~~~~------~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 95 AVPLLIKVAEANPI------N---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHHHHHHHCTT------C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCcH------h---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 35556666655322 2 3444444443 234667777766543 44467788899999999999999
Q ss_pred HHHHHHHHHcC
Q psy5551 150 NHVFQLGLNAH 160 (172)
Q Consensus 150 ~~I~~~Gi~~~ 160 (172)
...|+.+++..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999998753
No 43
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=75.74 E-value=14 Score=24.15 Aligned_cols=51 Identities=8% Similarity=-0.158 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHCCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTK-LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++.+.|..+....-... .+..+...|..+...|++++|...|+..+.....
T Consensus 57 ~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45666666665443331 1444556678888999999999999999987643
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=75.62 E-value=14 Score=27.13 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=44.0
Q ss_pred cchhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 95 QDPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 95 nD~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
.++....+|...+.. .+++.+.|....... ...+..|...|..+...|++++|...|+.++.....
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 445555666665553 234566666655433 334667778888888899999999999988875543
No 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=75.14 E-value=8.5 Score=30.63 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=46.0
Q ss_pred HHHHHHHhh---cCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 100 VSLVIKYIG---TQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 100 LkiWi~Ya~---~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
...|+.... ..+++..+|.-+... ....+..|..-|..+...|++++|.+.|++.+.....
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344665542 345688888888876 3446778888899999999999999999999987543
No 46
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=75.02 E-value=15 Score=26.41 Aligned_cols=78 Identities=8% Similarity=-0.048 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc------CCCHHHHHHHHHHCC--------------cchHHHHHHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT------QPNPLEIYNLVYSEN--------------IGTKLAMFYKA 135 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~------~~dp~~if~~L~~~~--------------IG~~~AlfYe~ 135 (172)
-...+++++.. ||.....|...+.. .+++.+.|....... +....+..|..
T Consensus 56 A~~~~~~al~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
T 1hh8_A 56 AEKAFTRSINR---------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 126 (213)
T ss_dssp HHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHH
T ss_pred HHHHHHHHHHh---------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHH
Confidence 35556666654 23445566655544 235777887777643 33345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 136 WAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 136 wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
.|..+...|++++|...|+.++.....
T Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 127 IAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 899999999999999999999987654
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=73.58 E-value=7.1 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|+-.... ....+..|...|..+...|++++|.+.|+++|+..
T Consensus 125 ~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 125 KAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 456666655543 34556667777888888888888888888888753
No 48
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=73.38 E-value=19 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 134 KAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 134 e~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
...|..+...|++++|...|+..+.....
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 45688899999999999999999987644
No 49
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=72.99 E-value=0.87 Score=40.15 Aligned_cols=11 Identities=64% Similarity=1.754 Sum_probs=9.7
Q ss_pred Ccccccccccc
Q psy5551 1 MVYSCSWPVYQ 11 (172)
Q Consensus 1 ~~~~~~~pv~~ 11 (172)
|+||||||++.
T Consensus 167 i~~sc~w~~~~ 177 (404)
T 3hg3_A 167 IVYSCEWPLYM 177 (404)
T ss_dssp CEEEECTGGGG
T ss_pred EEEEeCCCccc
Confidence 79999999875
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=72.93 E-value=12 Score=27.77 Aligned_cols=46 Identities=11% Similarity=-0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+.+.|.-..... ...+..|...|..+...|++++|..+|++++...
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 444555444422 2234445555566666666666666666666543
No 51
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=72.82 E-value=21 Score=25.89 Aligned_cols=119 Identities=8% Similarity=-0.019 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC--
Q psy5551 33 ICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ-- 110 (172)
Q Consensus 33 l~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~-- 110 (172)
..+....|++.+... ++| +.|.....-.. ..|.-..-...+++++....+.. .+.+....+|...+...
T Consensus 21 ~~~A~~~~~~a~~~~--~~~-~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH--KDI-TYLNNRAAAEY----EKGEYETAISTLNDAVEQGREMR--ADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HHHHHHHHHHHHHHS--CCT-HHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--ccH-HHHHHHHHHHH----HcccHHHHHHHHHHHHHhCcccc--cchHHHHHHHHHHHHHHHH
Confidence 445566677777655 444 33333222211 11211234555666665543321 11122245555544431
Q ss_pred ----CCHHHHHHHHHHCC------------------------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 ----PNPLEIYNLVYSEN------------------------IGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ----~dp~~if~~L~~~~------------------------IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++.+.|.-..... +....+..|...|..+...|++++|...|+.++...
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 92 LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 23555555555421 455667777788888888888888888888888754
No 52
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=71.70 E-value=19 Score=25.14 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=46.1
Q ss_pred chhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 96 DPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 96 D~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
|+....+|...+... +++.+.|...... ....+..|-.-|..+...|++++|...|++++.-...
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 556666666655442 3456666665553 4455666777888999999999999999999987543
No 53
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=71.49 E-value=16 Score=22.87 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
++.+.|.-.... ....+..|...|..+...|++++|...|+.++......
T Consensus 56 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 56 KAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 355566655543 33456678888999999999999999999999876543
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=71.47 E-value=14 Score=26.80 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+.++|.-+... ....+..|...|..+...|++++|...|+.+++..
T Consensus 110 A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 110 AKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45555555442 23334556667777777777777777777777654
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=71.23 E-value=23 Score=25.63 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 95 QDPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 95 nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
.+|....+|...+... +++.+.|.-.... ....+..|...|..+...|++++|...|+.++.....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 4666677777776652 2356666665543 3445677778888888899999999999988886544
No 56
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=71.16 E-value=12 Score=25.71 Aligned_cols=63 Identities=14% Similarity=-0.014 Sum_probs=41.4
Q ss_pred chhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 96 DPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 96 D~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
||....+|...+.. .+++...|.-..... ...+..|...+..+...|++++|...|+.++...
T Consensus 48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44445556555543 234666676666543 3445556677888888899999999998888754
No 57
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=70.82 E-value=19 Score=23.78 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 111 PNPLEIYNLVYSENIG-TKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
+++...|.-....+.. ...+..|...+..+...|++++|...|+++++.....
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4566677766664321 5677888899999999999999999999999876443
No 58
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=70.53 E-value=18 Score=26.14 Aligned_cols=48 Identities=8% Similarity=0.031 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++.+.|.......=. .+..|-.-+..+...|++++|...|++.+....
T Consensus 88 ~Ai~~~~~al~l~P~--~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 88 QAADLYAVAFALGKN--DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHHHSSS--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555555443322 333344555566666666666666666666543
No 59
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=70.50 E-value=20 Score=23.58 Aligned_cols=82 Identities=11% Similarity=0.001 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhc---CCC---HHHHHHHH----HHCCcchHHHHHHHHHHHHHHHcC
Q psy5551 75 NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT---QPN---PLEIYNLV----YSENIGTKLAMFYKAWAEVLDAHN 144 (172)
Q Consensus 75 ~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~---~~d---p~~if~~L----~~~~IG~~~AlfYe~wA~~lE~~~ 144 (172)
.-...+++++..+.+. .+.+....++...+.. ..+ +.+.|.-. ...+--...+..|...|..+...|
T Consensus 67 ~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 67 TASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 3466777777766543 2333334555555443 223 44444333 233444567888999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q psy5551 145 DIKQANHVFQLGLNA 159 (172)
Q Consensus 145 ~~~~A~~I~~~Gi~~ 159 (172)
++++|...++++++-
T Consensus 144 ~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEI 158 (164)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999864
No 60
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=70.17 E-value=18 Score=23.05 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
+..|...|..+...|++++|...|+.++.....|
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 112 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCH
Confidence 6677888999999999999999999999976544
No 61
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=69.18 E-value=13 Score=28.12 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcccccccchhHHHHHHHHhhc-CCCHHHHHHHHHHCCcchHHHH
Q psy5551 78 PFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT-QPNPLEIYNLVYSENIGTKLAM 131 (172)
Q Consensus 78 ~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~-~~dp~~if~~L~~~~IG~~~Al 131 (172)
++++.++.++.+ ..|-||.||.+.|+...-. ---|..|-..|..+||...+..
T Consensus 49 e~Ie~vl~~l~~-~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~ 102 (162)
T 3dfg_A 49 EAAQAAVERLAG-EGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVS 102 (162)
T ss_dssp HHHHHHHHHHHH-TTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHH
Confidence 345555555433 3899999999999986543 2459999999999999987653
No 62
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=68.91 E-value=19 Score=22.84 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++.+.|.-..... ...+..|...|..+...|++++|...|+.++.....
T Consensus 30 ~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 30 AAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 3555666555433 334667788899999999999999999999987543
No 63
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=67.39 E-value=23 Score=23.20 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=28.9
Q ss_pred cccccchhHHHHHHHHhhcCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy5551 91 EQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157 (172)
Q Consensus 91 e~Y~nD~RyLkiWi~Ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 157 (172)
..|..=..+++--+.......++..... .|...|..+...|++++|...+++++
T Consensus 63 g~~~~A~~~~~~a~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 63 GEFETASEYYKKTLLLARQLKDRAVEAQ-------------SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444455555555555555555422 22334555566666666666666554
No 64
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=67.09 E-value=10 Score=29.16 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcccccccchhHHHHHHHHhhcC--CCHHHHHHHHHHCCcchHHH
Q psy5551 78 PFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ--PNPLEIYNLVYSENIGTKLA 130 (172)
Q Consensus 78 ~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~--~dp~~if~~L~~~~IG~~~A 130 (172)
..++.++.++. ...|-||.||.+-|+...-.. --|..|-.-|..+||...+.
T Consensus 50 ~~ie~vl~~L~-~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I 103 (177)
T 3e3v_A 50 DYISEIINKLI-DLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIA 103 (177)
T ss_dssp HHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHH
Confidence 34455554433 348999999999999876543 46999999999999998765
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=66.91 E-value=28 Score=24.19 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|...... ....+..|...+..+...|++++|...|++++...
T Consensus 63 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 63 KAAEDAELATVV--DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 466666666554 34457778888999999999999999999999864
No 66
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=66.28 E-value=21 Score=22.14 Aligned_cols=48 Identities=6% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+...|....... ...+..|...|..+...|++++|...|+++++....
T Consensus 25 A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 25 SIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 444454444332 223455677888999999999999999999987654
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=65.97 E-value=15 Score=24.88 Aligned_cols=47 Identities=13% Similarity=-0.058 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
++...|.-.....-....+..+...+..+...|++++|.+.+.....
T Consensus 99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 99 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 46667766666555555566666666667777888888888776543
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=65.23 E-value=32 Score=27.30 Aligned_cols=82 Identities=11% Similarity=-0.078 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC---C---CHHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcCC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ---P---NPLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~---~---dp~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
-...+++++..+.+. .+...-..++...+... . ++.+.|..... .+-....+..|...|..+...|+
T Consensus 282 A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 282 AAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 355666666655433 33334455555555542 2 34444443332 12234456688889999999999
Q ss_pred HHHHHHHHHHHHHcC
Q psy5551 146 IKQANHVFQLGLNAH 160 (172)
Q Consensus 146 ~~~A~~I~~~Gi~~~ 160 (172)
+++|.+.|+.++.-.
T Consensus 359 ~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 359 HERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 69
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=64.80 E-value=22 Score=22.35 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++.++|.-+.... ...+..+...|..+...|++++|..+|+.++....
T Consensus 27 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 27 EAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 3556666655432 23355677888999999999999999999998653
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=64.64 E-value=15 Score=29.16 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
++...|.-+....=......+..+|..++...|++++|..+|+..+..
T Consensus 148 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 345555555544433333444455555555556666666666666655
No 71
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=64.37 E-value=11 Score=25.80 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 127 TKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 127 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
+.-|..+..=|.-.+..|+|++|...|..||.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34577888889999999999999999999986
No 72
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=64.21 E-value=19 Score=25.40 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=43.0
Q ss_pred chhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 96 DPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 96 D~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
||.....|...+.. .+++.+.|.......- ..+..|...|..+...|++++|.+.|++++...
T Consensus 51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45555666665543 2346777777766443 344555667888889999999999999988754
No 73
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=63.85 E-value=14 Score=31.17 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=46.0
Q ss_pred cchh-HHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 95 QDPR-YVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 95 nD~R-yLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
.||. +..+|...++.+ +++.++|.-+...+ ...+..|...+..+...|++++|.+.|++.++...
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 3454 366666666552 34677777776543 44567788888888889999999999988887653
No 74
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=63.62 E-value=22 Score=21.52 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++...|.-..... ...+..|...|..+...|++++|...|++++....
T Consensus 26 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 26 DEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677777776543 34466777889999999999999999999998754
No 75
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=63.58 E-value=17 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcccccccchhHHHHHHHHhhcC-CCHHHHHHHHHHCCcchHHHH
Q psy5551 78 PFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ-PNPLEIYNLVYSENIGTKLAM 131 (172)
Q Consensus 78 ~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~-~dp~~if~~L~~~~IG~~~Al 131 (172)
+.++.+|.++. ...|-||.||...|+...-.. --|..|-.-|..+||...+..
T Consensus 47 ~~i~~vl~~l~-~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i~ 100 (159)
T 3c1d_A 47 EDYERVIAWCH-EHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATE 100 (159)
T ss_dssp HHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHH-HcCCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHHH
Confidence 34445554433 348999999999999876432 359999999999999987753
No 76
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=63.33 E-value=12 Score=25.65 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
+|.-|..-+..++..|++++|.+.|++++.....|
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 34556677889999999999999999999866555
No 77
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=63.27 E-value=23 Score=27.78 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHH
Q psy5551 77 IPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150 (172)
Q Consensus 77 ~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~ 150 (172)
..++++++.. +|.....|...+... +++.+.|.-.... ....+..|...+..+...|++++|.
T Consensus 85 ~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 85 ILFMEAAILQ---------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHh---------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHccccHHHHH
Confidence 4555555543 333455666665542 3467777777664 3455677888999999999999999
Q ss_pred HHHHHHHHcC
Q psy5551 151 HVFQLGLNAH 160 (172)
Q Consensus 151 ~I~~~Gi~~~ 160 (172)
.+|++++...
T Consensus 154 ~~~~~al~~~ 163 (365)
T 4eqf_A 154 EALKNWIKQN 163 (365)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 78
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=63.17 E-value=12 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
.-|.-+..=|.-+++.|+|++|...|+.||.-
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44556677788899999999999999999873
No 79
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=63.05 E-value=50 Score=25.45 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC---C---CHHHHHHHH----HHCCcchHHHHHHHHHHHHHHHcC-
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ---P---NPLEIYNLV----YSENIGTKLAMFYKAWAEVLDAHN- 144 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~---~---dp~~if~~L----~~~~IG~~~AlfYe~wA~~lE~~~- 144 (172)
-...+++++..+...+ .+++....++...+... . ++.+.|.-. ...+--..++..|..-+..+...|
T Consensus 174 A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 174 GIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 4667777777665442 36677777887777652 2 344444332 344455566999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy5551 145 DIKQANHVFQLGLN 158 (172)
Q Consensus 145 ~~~~A~~I~~~Gi~ 158 (172)
.+++|.+.|++++.
T Consensus 252 ~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 252 EEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 57999999999985
No 80
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=62.52 E-value=14 Score=27.46 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++.+.|.-... +....+..|...|..+...|++++|...|++++...
T Consensus 91 ~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 91 SLAIQQYQAAVD--RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 346667766665 334455678888888899999999999999888764
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=62.50 E-value=38 Score=23.92 Aligned_cols=49 Identities=8% Similarity=-0.087 Sum_probs=37.6
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
....|.-.... .-..+..+...|..+...|++++|...|+..++....|
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 46666666543 34456677788999999999999999999999887554
No 82
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=62.11 E-value=13 Score=24.95 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 125 IGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 125 IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
.|...+..|...|..+.+.|++++|...++..+.-.
T Consensus 41 ~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 41 STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 477888999999999999999999999999998754
No 83
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=61.93 E-value=26 Score=21.89 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHCCcchHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 112 NPLEIYNLVYSENIGTKLAM-FYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~Al-fYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
++...|....... ...+. .|...|..+...|++++|.+.|++++.....-
T Consensus 18 ~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 18 NALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3555555554432 33344 66777888899999999999999999876443
No 84
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=61.76 E-value=33 Score=23.02 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++.+.|.-.... ....+..|...|..+...|++++|...|++++.....
T Consensus 65 ~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 65 YALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 355566555543 3445677888999999999999999999999987543
No 85
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=61.57 E-value=18 Score=28.65 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcccccccchhHHHHHHHHhhc--CCCHHHHHHHHHHCCcchHHHH
Q psy5551 78 PFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT--QPNPLEIYNLVYSENIGTKLAM 131 (172)
Q Consensus 78 ~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~--~~dp~~if~~L~~~~IG~~~Al 131 (172)
+.++.++.++. ...|-||.||.+-|+...-. ---|..|-.-|..+||...+..
T Consensus 93 e~i~~vl~~L~-~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~ 147 (221)
T 3d5l_A 93 EFVEPILKKLR-GQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDID 147 (221)
T ss_dssp HHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHH
Confidence 34444444433 34999999999999987644 3469999999999999987753
No 86
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=60.92 E-value=15 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 131 MFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 131 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
..|..-|..+...|++++|.+.|+++|.
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555556666666666655554
No 87
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=60.91 E-value=10 Score=27.61 Aligned_cols=65 Identities=6% Similarity=0.080 Sum_probs=50.0
Q ss_pred cchhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 95 QDPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 95 nD~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
-||.....|...+.. .+++...|..+... ....+.+|...+..+...|++++|...|++++.-..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 367777777666654 24577888777754 345677888899999999999999999999998653
No 88
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=60.61 E-value=41 Score=26.58 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
+++.+.|..+... ....+..+...+..+...|++++|.++|++.+..
T Consensus 118 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 118 EGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp SHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455555555432 3334444555566666666666666666666554
No 89
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.40 E-value=15 Score=24.89 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
-|.-+..=|.-.++.|+|++|...|+.||.-
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555677788899999999999999999873
No 90
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.93 E-value=15 Score=24.64 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
.-|..+..=|.-.+..|+|++|...|..||.-
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888999999999999999999873
No 91
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=59.04 E-value=49 Score=27.41 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 95 QDPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 95 nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
.++....+|...+... +++.+.|....... ...+..|-..|..+...|++++|...|+++++...
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5677778888777652 34677777777644 45566777888899999999999999999998754
No 92
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=59.01 E-value=15 Score=25.89 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=45.3
Q ss_pred chhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 96 DPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 96 D~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
||.-...|...+.. .+++...|...... ....+..|...+..+...|++++|...|++++...
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555556555543 23567777776654 34456667788889999999999999999999865
No 93
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=58.98 E-value=33 Score=25.81 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+.+.|.-.... ....+..|...|..+...|++++|...|+..+.....
T Consensus 225 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 225 ALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 45555554442 2333445556666677777777777777777665433
No 94
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=57.84 E-value=20 Score=30.21 Aligned_cols=46 Identities=7% Similarity=0.134 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
++.++|..+.. +.......|...+..+...|++++|.++|+..+..
T Consensus 391 ~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 391 EARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555555544 23333444555566666666666666666665544
No 95
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=57.60 E-value=12 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q psy5551 134 KAWAEVLDAHNDIKQANHVFQL 155 (172)
Q Consensus 134 e~wA~~lE~~~~~~~A~~I~~~ 155 (172)
..|++++-+.|+.++|+.|=+.
T Consensus 6 aQW~eYYrsiG~~~eAeaIe~q 27 (33)
T 2bn5_A 6 AQWAEYYRSVGKIEEAEAIEKT 27 (33)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHH
Confidence 4799999999999999999543
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=56.75 E-value=9.3 Score=27.34 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHH
Q psy5551 77 IPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150 (172)
Q Consensus 77 ~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~ 150 (172)
...+++++.. ||.....|+.++.. .+++.+.|.-+....=+..-+..+...+..+...|+.++|.
T Consensus 94 ~~~~~~al~~---------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 94 LKRLEQELAA---------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHH---------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHh---------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 5667777754 44555666666654 23577888877776644434456677889999999999999
Q ss_pred HHHHHHHHc
Q psy5551 151 HVFQLGLNA 159 (172)
Q Consensus 151 ~I~~~Gi~~ 159 (172)
..|++.+.+
T Consensus 165 ~~y~~al~~ 173 (176)
T 2r5s_A 165 SKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=56.70 E-value=21 Score=28.75 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=43.1
Q ss_pred chhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 96 DPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 96 D~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+|.....|...+.. .+++.+.|.-+... +...+..|...|..+...|++++|..+|+..+....
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33345555555443 23467777766654 344567777888888888999999999988887654
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=56.55 E-value=20 Score=24.57 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
|.-|..-+..+...|+|++|.+.|+++|+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~ 42 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR 42 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444444455555555555555555543
No 99
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=56.31 E-value=57 Score=23.97 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHCCcchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKL-AMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++.+.|.-.....-.... +..|...+..+...|++++|...|++++....
T Consensus 54 ~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~ 105 (272)
T 3u4t_A 54 DLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105 (272)
T ss_dssp HHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 4577788877774422233 56688999999999999999999999998653
No 100
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=56.31 E-value=19 Score=22.68 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+.+.|.-.... ....+..|...|..+...|++++|...|++++.....
T Consensus 23 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 23 AVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 44444444432 2333566778889999999999999999999987654
No 101
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=56.28 E-value=67 Score=24.75 Aligned_cols=114 Identities=11% Similarity=-0.020 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhc--
Q psy5551 32 AICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT-- 109 (172)
Q Consensus 32 ~l~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~-- 109 (172)
...+....|++.+...........|.....-.. ..|.-..-...+++++... |....+|...+..
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN----LSGEYDKAVDCFTAALSVR---------PNDYLLWNKLGATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHHHHH
Confidence 344556667766655332212334433322222 1122123456666666542 2334455555544
Q ss_pred ----CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 110 ----QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 110 ----~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
.+++.+.|.-.... ....+..|...|..+...|++++|...|++++...
T Consensus 263 ~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23467777776653 44566788899999999999999999999998754
No 102
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=56.16 E-value=40 Score=22.08 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|.-... +....+..|...|..+...|++++|...|++++...
T Consensus 56 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 56 EAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 45666665554 344556778888999999999999999999999865
No 103
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=55.92 E-value=15 Score=28.46 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=41.9
Q ss_pred HHHHHHhhcC---CCH---------HHHHHHHHH------CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 101 SLVIKYIGTQ---PNP---------LEIYNLVYS------ENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 101 kiWi~Ya~~~---~dp---------~~if~~L~~------~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
..|+.|+++. .|| +++|+--.+ ++--...+-+|+.||.+.|. ++.++|.+||+..++.
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei-~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAI-QEPDDARDYFQMARAN 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHH-HCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 4677777763 344 256654433 44556788899999988655 9999999999999764
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=55.29 E-value=56 Score=26.77 Aligned_cols=90 Identities=10% Similarity=-0.062 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhhcccccccchh-H-HHHHHHHh-----------hcCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPR-Y-VSLVIKYI-----------GTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDA 142 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~R-y-LkiWi~Ya-----------~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~ 142 (172)
-...+++++....+........- + .+-++... ...+++...|.-..... ...+..|...|..+..
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 45566666666655544443332 1 11122222 33456777777776643 3445678888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHH
Q psy5551 143 HNDIKQANHVFQLGLNAHAEPIEDL 167 (172)
Q Consensus 143 ~~~~~~A~~I~~~Gi~~~A~P~~~L 167 (172)
.|++++|.+.|+.+++......+.+
T Consensus 475 ~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999999999876655543
No 105
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.64 E-value=23 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 131 MFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 131 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
..|...|..+...|++++|...|++++...
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 68 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD 68 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 455556666666666666666666666654
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=54.45 E-value=68 Score=25.93 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIE 165 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~ 165 (172)
+++...|.-.... ....+..|...|..+...|++++|...|++.+.......+
T Consensus 432 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 432 IEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 3467777766653 4455677888999999999999999999999987655433
No 107
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=54.28 E-value=38 Score=26.81 Aligned_cols=81 Identities=10% Similarity=0.003 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcCC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
-...+++++..+.+ ..+......++...+... +++.+.|.-... .+-....+..|...|..+...|+
T Consensus 242 A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 242 AIEHHQERLRIARE---FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 45566666666554 233333444555544431 234555543332 23333557888899999999999
Q ss_pred HHHHHHHHHHHHHc
Q psy5551 146 IKQANHVFQLGLNA 159 (172)
Q Consensus 146 ~~~A~~I~~~Gi~~ 159 (172)
+++|...|++++..
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 108
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=54.17 E-value=41 Score=21.72 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
..+.|.-..... ...+..+...|..+...|++++|...|++.+.....
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 51 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 344444444332 233456777888899999999999999999987644
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=54.16 E-value=76 Score=24.75 Aligned_cols=121 Identities=8% Similarity=0.015 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcC-CCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC--CC
Q psy5551 36 SSREFELQIRTY-DGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ--PN 112 (172)
Q Consensus 36 ~r~~fE~~i~~~-~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~--~d 112 (172)
....|+..+... ...||-..-.-|.+--. .|-..|.-..-...+++++..+.+... .......+...+... .+
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~g~ 130 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGM-MLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEPLD 130 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHcCC
Confidence 344555555432 34455444333333221 122222222457778888877654321 223344444444332 33
Q ss_pred ---HHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 113 ---PLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 113 ---p~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+.+.|.-... .|--...+..|...+.++...|++++|...|++.+...
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344433221 12223457889999999999999999999999999873
No 110
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=54.15 E-value=75 Score=24.70 Aligned_cols=113 Identities=13% Similarity=0.028 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC
Q psy5551 32 AICLSSREFELQIRTYDGP-DPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ 110 (172)
Q Consensus 32 ~l~~~r~~fE~~i~~~~~d-DPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~ 110 (172)
+..+....|++.+...... || ..|.....-... .|.-..-...+++++... |....+|...+...
T Consensus 192 ~~~~A~~~~~~al~~~p~~~~~-~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 192 VLEGVKELYLEAAHQNGDMIDP-DLQTGLGVLFHL----SGEFNRAIDAFNAALTVR---------PEDYSLWNRLGATL 257 (365)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCH-HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccCH-HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHH
Confidence 3445566677666653221 33 344443332221 121123455666666542 33345666666542
Q ss_pred ------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++...|.-.... ....+..|...+..+...|++++|...|++++...
T Consensus 258 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3477777777664 34457778889999999999999999999998754
No 111
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=53.91 E-value=1e+02 Score=26.55 Aligned_cols=130 Identities=8% Similarity=0.002 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHH---HH
Q psy5551 29 LFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLV---IK 105 (172)
Q Consensus 29 ~~~~l~~~r~~fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiW---i~ 105 (172)
+...+.+.+..||+.|....+--+.-.++-...+....+. .....-..-+.+.++.-...+.=.+|++....- ..
T Consensus 211 ~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~--~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l 288 (372)
T 3ly7_A 211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH--PLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL 288 (372)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC--CCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH
Confidence 3456677888899999765444344443322222222221 111122344444454434445557788876653 22
Q ss_pred HhhcCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 106 YIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 106 Ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
+..-.+.+...+.-....+ ..++-|..-+..++..|++++|.+-|.+++..+..+
T Consensus 289 ~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 289 VKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 2333445667777666665 357788889999999999999999999999987655
No 112
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=53.86 E-value=40 Score=27.00 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|.-+... ....+..|...+..+...|++++|...|++.++..
T Consensus 313 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 313 EAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 466666666543 44566788889999999999999999999999864
No 113
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=53.78 E-value=31 Score=26.76 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|.-+... ....+..|...+..+...|++++|...|++++...
T Consensus 235 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 235 KAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355555555543 33445566677777777777777777777777654
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=53.70 E-value=54 Score=22.87 Aligned_cols=121 Identities=9% Similarity=0.058 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhc--CCCCCChHHHHHH-HHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccch-hHHHHHHHHhh
Q psy5551 33 ICLSSREFELQIRT--YDGPDPLQLRFDY-VQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP-RYVSLVIKYIG 108 (172)
Q Consensus 33 l~~~r~~fE~~i~~--~~~dDPL~~w~~Y-I~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~-RyLkiWi~Ya~ 108 (172)
..+....|++.+.. ..+++|.....-+ +-++ |-..|.-..-...+++++..+.. ..+|+ ....++...+.
T Consensus 42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~lg~ 115 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMV---ERMAGNWDAARRCFLEERELLAS---LPEDPLAASANAYEVAT 115 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHH---cCccHHHHHHHHHHHHH
Confidence 34455667666653 3345554443321 2222 22222222346677777777653 34344 33444444443
Q ss_pred c------CCCHHHHHHHHH----HCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 109 T------QPNPLEIYNLVY----SENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 109 ~------~~dp~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
. .+++...|.-.. ..+--...+..+...|..+...|++++|...++.++.-
T Consensus 116 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3 123444444433 33334455777888999999999999999999998863
No 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=53.59 E-value=44 Score=27.14 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc---C---CCHHHHHHHHHH--------CCcchHHHHHHHHHHHHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT---Q---PNPLEIYNLVYS--------ENIGTKLAMFYKAWAEVLD 141 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~---~---~dp~~if~~L~~--------~~IG~~~AlfYe~wA~~lE 141 (172)
=+..+++++.-++....-..|++.+..|-..+.. . +++...|.-... .++-...+..-..|+.+..
T Consensus 70 Al~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (472)
T 4g1t_A 70 ALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC 149 (472)
T ss_dssp HHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHH
Confidence 4677888887777766667788988888776653 2 234444443322 1222333444566777767
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q psy5551 142 AHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 142 ~~~~~~~A~~I~~~Gi~~~ 160 (172)
..++|++|.+.|++++.-.
T Consensus 150 ~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 150 GGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHhC
Confidence 7788999999999988754
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=52.10 E-value=81 Score=24.46 Aligned_cols=47 Identities=6% Similarity=-0.104 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++...|..... +....+..|-..|..+...|++++|...|++++...
T Consensus 56 ~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 56 QALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555555444 444555666778889999999999999999998753
No 117
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=52.02 E-value=85 Score=24.69 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 131 MFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 131 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
..|...+..+...|++++|...|++.+..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444445555555444444443
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=51.98 E-value=42 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|...... ....+..|...|..+...|++++|...|+.++...
T Consensus 22 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 22 TALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 466777766654 34457778888999999999999999999998753
No 119
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=51.73 E-value=26 Score=22.66 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+..+...|..+...|++++|...|++.+....
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 38 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP 38 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44566778889999999999999999998754
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=51.72 E-value=52 Score=22.89 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=35.2
Q ss_pred chhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcC
Q psy5551 96 DPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHV-FQLGLNAH 160 (172)
Q Consensus 96 D~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I-~~~Gi~~~ 160 (172)
||.....|...+... +++...|..... +....+..|...|.++...|++.+|... ++++++-.
T Consensus 61 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 444555565555442 234555554443 3444555666677777777777665554 36666643
No 121
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=51.30 E-value=41 Score=23.48 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+.+.|..... +.......+...+..+...|++++|.+.|++.++...
T Consensus 92 a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 92 AIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 4455544443 4455566778889999999999999999999998753
No 122
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.79 E-value=25 Score=24.18 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
-|.-+..=|.-++..|+|++|...|..||..
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566677788899999999999999998874
No 123
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.69 E-value=23 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 126 GTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 126 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
+++-|.=|+.=|.-++..|+-.+|.+.|++||..
T Consensus 18 ~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~e 51 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGH 51 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3456777888888899999999999999999974
No 124
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=50.39 E-value=25 Score=22.12 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+.-|..-|..+...|++++|...|+.++.....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 36 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ 36 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455667788999999999999999999987543
No 125
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=50.34 E-value=71 Score=23.31 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+..|...|..+...|++++|...|++++....
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 67888999999999999999999999998764
No 126
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=49.17 E-value=23 Score=25.59 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 127 TKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 127 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
..-|.++..=|.-.+..|+|++|...|..||.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888899999999999999999987
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=49.08 E-value=44 Score=28.68 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=44.5
Q ss_pred hhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 97 PRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 97 ~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
|.....|...+.. .+++.+.|....... ...+..|-..|..+...|++++|.+.|+++++..
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3345555555543 234677777776654 4456667788999999999999999999999865
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=48.75 E-value=60 Score=21.99 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++...|..+... ....+.+|...+..+...|++++|...|++++....
T Consensus 35 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 35 DDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3466666665543 344566777788888899999999999999988653
No 129
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=47.34 E-value=69 Score=23.73 Aligned_cols=82 Identities=11% Similarity=0.008 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc---CCC---HHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcCC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT---QPN---PLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~---~~d---p~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
-...+++++..+.+. .+.+....++...+.. ..+ +...|.-... .+-....+..|...|..+...|+
T Consensus 242 A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 242 ASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456677777665543 3333445555555544 233 4444443332 23344556788899999999999
Q ss_pred HHHHHHHHHHHHHcC
Q psy5551 146 IKQANHVFQLGLNAH 160 (172)
Q Consensus 146 ~~~A~~I~~~Gi~~~ 160 (172)
+++|...|+++++-.
T Consensus 319 ~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 319 HDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998754
No 130
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone, nucleoprotein, RNA replication; 2.10A {Mokola virus}
Probab=47.11 E-value=4 Score=34.48 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHh
Q psy5551 40 FELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYI 107 (172)
Q Consensus 40 fE~~i~~~~~dDPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya 107 (172)
.|+.....+|.||+-++..|+.=+ |- +. ..+-|.-+||+|||=.-.
T Consensus 77 ~eEDf~m~egeDP~~~FQsyLD~v------G~----------qi------Vr~MksGErFfKIWSq~v 122 (303)
T 2wzl_A 77 SEEDNYLSEGQDPLIPFQNFLDEI------GA----------RA------VKRLKTGEGFFRVWSALS 122 (303)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccccccccccCcchHHHHHHHHH------HH----------HH------HHHHhccccHHHHHHHHH
Confidence 344444457999999999997643 11 11 234567789999996544
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=46.60 E-value=69 Score=23.71 Aligned_cols=81 Identities=11% Similarity=-0.021 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC---CC---HHHHHHHHH----HCCcchHHHHHHHHHHHHHHHcCC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ---PN---PLEIYNLVY----SENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~---~d---p~~if~~L~----~~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
-...+++++..+.+ ..+.+....+|...+... .+ +.+.|.-.. ..+-....+..+...|..+...|+
T Consensus 202 A~~~~~~a~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 202 AVIAHEQRLLIAKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 45666666666544 334444455666655542 23 444444332 233344457888899999999999
Q ss_pred HHHHHHHHHHHHHc
Q psy5551 146 IKQANHVFQLGLNA 159 (172)
Q Consensus 146 ~~~A~~I~~~Gi~~ 159 (172)
+++|...|+.++..
T Consensus 279 ~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 279 YEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 132
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.92 E-value=37 Score=22.31 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
.+..|...|..+...|++++|...|+..+....
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 367788889999999999999999999998754
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=45.91 E-value=51 Score=20.33 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++...|.-.... ....+..+...|..+...|++++|...|+.++.....
T Consensus 22 ~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 22 DALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 466677666553 3445677888899999999999999999999987543
No 134
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=44.99 E-value=1.1e+02 Score=24.36 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=34.6
Q ss_pred CHHHHHHHHHH-----CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYS-----ENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~-----~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
.+.+.|.-... ..- ..+..+...|..+...|++++|...|++++.-.
T Consensus 240 ~A~~~~~~al~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPD--LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35555555544 332 226777888999999999999999999999853
No 135
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=43.02 E-value=92 Score=22.48 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+++.+.|...... ....+..|...|..+...|++++|...|+.+++....
T Consensus 59 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 59 KEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 3466777766654 4456778888999999999999999999999987543
No 136
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=42.76 E-value=52 Score=30.37 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred chhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 96 DPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 96 D~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
||.+...|...+... +++.+.|.-... +--..+.-|...|..+...|++++|.+.|+++++-+
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 566667777666542 346666665554 445567778888888999999999999999988865
No 137
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=42.68 E-value=89 Score=22.24 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++.+.|.-+.... ...+..|...|..+...|++++|...|+++++....
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 3455555544432 233445566666666777777777777776665443
No 138
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=42.68 E-value=92 Score=24.69 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHC----CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 112 NPLEIYNLVYSE----NIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 112 dp~~if~~L~~~----~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
++.+.|...... +=-...+.+|...|..+...|++.+|...|++++.-
T Consensus 121 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 172 (383)
T 3ulq_A 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172 (383)
T ss_dssp HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666665543 223457889999999999999999999999999874
No 139
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=42.13 E-value=57 Score=23.85 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++...|.-.... ....+..|...|..+...|++++|...|++.++...
T Consensus 72 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 72 KAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 466666665543 345567788889999999999999999999988653
No 140
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=42.01 E-value=94 Score=23.19 Aligned_cols=63 Identities=11% Similarity=-0.128 Sum_probs=44.5
Q ss_pred hHHHHHHHHhhc---C---CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 98 RYVSLVIKYIGT---Q---PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 98 RyLkiWi~Ya~~---~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
.....|...+.. . +++.+.|.-+... ....+..|...|..+...|++++|...|+..+.....
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344555555543 2 3467777766654 4455677888899999999999999999999986543
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=40.55 E-value=87 Score=21.70 Aligned_cols=34 Identities=12% Similarity=-0.077 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 126 GTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 126 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
-...+..|..-+..+...|++++|...|+.++..
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445667777888899999999999999999875
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=40.30 E-value=43 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCC
Q psy5551 132 FYKAWAEV-LDAHNDI--KQANHVFQLGLNAHA 161 (172)
Q Consensus 132 fYe~wA~~-lE~~~~~--~~A~~I~~~Gi~~~A 161 (172)
.|...|.. +...|++ ++|...|+.++....
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence 34556666 5677887 888888888887653
No 143
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=39.83 E-value=90 Score=26.37 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHCCc-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENI-GTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~I-G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++.+.|.-.....- ....+..|...|..+...|++++|.+.|+++++...
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 446777777666321 226788899999999999999999999999998653
No 144
>1jjz_A Kalata B1; cyclic peptide, cyclotide, disulfide pairing, uterotonic, plant protein; NMR {Oldenlandia affinis} SCOP: g.3.3.1 PDB: 1k48_A 2khb_A 2k7g_A
Probab=39.65 E-value=8.4 Score=21.74 Aligned_cols=6 Identities=83% Similarity=2.239 Sum_probs=5.4
Q ss_pred cccccc
Q psy5551 4 SCSWPV 9 (172)
Q Consensus 4 ~~~~pv 9 (172)
||+|||
T Consensus 21 sC~~~v 26 (29)
T 1jjz_A 21 TCSWPV 26 (29)
T ss_dssp CCCSSB
T ss_pred eeCCcc
Confidence 899998
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=39.60 E-value=81 Score=21.70 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
++.+.|.-.... ....+..|...|..+...|++++|...|++.+.....
T Consensus 29 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 29 KAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 355555555443 3445778888999999999999999999999987643
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=39.54 E-value=92 Score=21.50 Aligned_cols=51 Identities=8% Similarity=-0.024 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
+++...|.......- ..+..|...|..+...|++++|...|+.++......
T Consensus 98 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 446777777666543 445667788999999999999999999999876543
No 147
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=39.22 E-value=54 Score=28.41 Aligned_cols=102 Identities=6% Similarity=0.011 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccc----------cccchhHHHHHHH-HhhcC-------CC-
Q psy5551 52 PLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQ----------YKQDPRYVSLVIK-YIGTQ-------PN- 112 (172)
Q Consensus 52 PL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~----------Y~nD~RyLkiWi~-Ya~~~-------~d- 112 (172)
+|+.|-+=+.=+...-+.+ -+....|.+..=.++...-. =.|-.+.+.||+. .-+.. +.
T Consensus 225 ~l~~WkE~La~i~t~a~~e--~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~~~~~~~~~~~s~ 302 (399)
T 2pm7_A 225 DVSQWKFISKAIQNLYPND--IAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWLSEFPDLEDKLKKDNKTI 302 (399)
T ss_dssp CGGGHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHSHHHHHHHHHHTTCCH
T ss_pred ChhhHHHHHHHHHhcCCcc--HhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHhcchhhhccccccCCc
Confidence 5888888888877655322 01233333333333322110 0356788999987 22110 01
Q ss_pred ----HHH---------HHHHHHH---CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy5551 113 ----PLE---------IYNLVYS---ENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQL 155 (172)
Q Consensus 113 ----p~~---------if~~L~~---~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~ 155 (172)
+.. ||..... .-.+..++.+|.+||.+|..+|++..|.+.+..
T Consensus 303 ~~~~~~~Lqe~iEkv~vl~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 303 YEAHSECMTEFIERFTVFSNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 212 2333221 225677999999999999999999999999975
No 148
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=39.16 E-value=23 Score=24.86 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q psy5551 126 GTKLAMFYKAWAEVLDAH---NDIKQANHVFQLGLNA 159 (172)
Q Consensus 126 G~~~AlfYe~wA~~lE~~---~~~~~A~~I~~~Gi~~ 159 (172)
..+.|.=|+.=|.-.+.. |+-.+|.+.|++||..
T Consensus 12 ~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~e 48 (89)
T 3eab_A 12 FHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEE 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHH
Confidence 345677788888888888 9999999999999974
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=39.06 E-value=71 Score=29.45 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=43.9
Q ss_pred chhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 96 DPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 96 D~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
||.+...|...+... +++.+.|+.... +--..+..|...+..+...|++++|.+.|++.++-
T Consensus 107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 566666776666542 346666666554 44556777888888888899999998888888764
No 150
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=38.89 E-value=1.3e+02 Score=23.18 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
+..|...|..+...|++++|...|+.++.
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44444555555555555555555555443
No 151
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=38.64 E-value=1.2e+02 Score=23.40 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC---CC---HHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcCC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ---PN---PLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~---~d---p~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
-...+++++..+.+. .+......++...+... .+ +.+.|..... .+-....+..|...|..+...|+
T Consensus 246 A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 246 ASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 466677777665543 33444455666655542 23 4444444332 23344457788899999999999
Q ss_pred HHHHHHHHHHHHHc
Q psy5551 146 IKQANHVFQLGLNA 159 (172)
Q Consensus 146 ~~~A~~I~~~Gi~~ 159 (172)
+++|...|+.+++-
T Consensus 323 ~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 323 HDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 152
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=38.35 E-value=73 Score=22.06 Aligned_cols=80 Identities=3% Similarity=-0.033 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcccccccchhHHHHHHHHhhc------CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy5551 79 FLEETLVAFKNIEQYKQDPRYVSLVIKYIGT------QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHV 152 (172)
Q Consensus 79 lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I 152 (172)
=+++.+..|+..-. .+|-.-..|+..+.. .+.+.+.|.-... +-...+..|...+..+...|++++|...
T Consensus 12 ~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 12 DVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34566666554322 344444444444433 2346777776665 4456778888999999999999999999
Q ss_pred HHHHHHcCCC
Q psy5551 153 FQLGLNAHAE 162 (172)
Q Consensus 153 ~~~Gi~~~A~ 162 (172)
|++.++-...
T Consensus 88 ~~~al~~~p~ 97 (150)
T 4ga2_A 88 YRRSVELNPT 97 (150)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9999987643
No 153
>2kvx_A Kalata-B12; plant protein; NMR {Oldenlandia affinis}
Probab=37.84 E-value=8.7 Score=21.50 Aligned_cols=6 Identities=50% Similarity=1.630 Sum_probs=5.4
Q ss_pred cccccc
Q psy5551 4 SCSWPV 9 (172)
Q Consensus 4 ~~~~pv 9 (172)
||+|||
T Consensus 19 sC~~~v 24 (28)
T 2kvx_A 19 SCNYPI 24 (28)
T ss_dssp BCCTTE
T ss_pred ccCCCe
Confidence 899998
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=37.14 E-value=84 Score=20.36 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++...|.-.... ....+.+|...|..+...|++++|...|+.++....
T Consensus 27 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 74 (137)
T 3q49_B 27 EAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74 (137)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 345555554443 334567888889999999999999999999998653
No 155
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=37.00 E-value=1.3e+02 Score=22.62 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++...|.-+... ....+..|...|..+...|++++|...|+.+++...
T Consensus 54 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 54 KAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3466777666654 344557788899999999999999999999998754
No 156
>2fqa_A Violacin 1, violacin A; cystine knot, beta sheet, beta turns, plant protein; NMR {Viola odorata}
Probab=36.99 E-value=6.8 Score=21.76 Aligned_cols=6 Identities=83% Similarity=1.719 Sum_probs=5.3
Q ss_pred cccccc
Q psy5551 4 SCSWPV 9 (172)
Q Consensus 4 ~~~~pv 9 (172)
||+|||
T Consensus 20 sC~~~v 25 (27)
T 2fqa_A 20 SCSYPV 25 (27)
T ss_dssp EEETTE
T ss_pred eeCCcc
Confidence 799997
No 157
>2lam_A Cyclotide CTER M; insecticidal peptide, antiviral protein; NMR {Clitoria ternatea}
Probab=36.77 E-value=6.9 Score=22.08 Aligned_cols=6 Identities=83% Similarity=2.261 Sum_probs=5.3
Q ss_pred cccccc
Q psy5551 4 SCSWPV 9 (172)
Q Consensus 4 ~~~~pv 9 (172)
||+|||
T Consensus 20 sC~~~v 25 (29)
T 2lam_A 20 SCSWPI 25 (29)
T ss_dssp EEETTE
T ss_pred ccCCCe
Confidence 899998
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=36.39 E-value=59 Score=23.26 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
.+.-+..-|..+...|+|++|...|+.++...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 68 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF 68 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999853
No 159
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=35.90 E-value=52 Score=24.61 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIG-TKLAMFYKAWAEVLDA--------HNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG-~~~AlfYe~wA~~lE~--------~~~~~~A~~I~~~Gi~~~A 161 (172)
++.+.|.-+....=+ ...+.-|-.-+..+.. .|++.+|...|++.+....
T Consensus 70 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 70 LAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 466666666654221 1223333344556666 9999999999999998753
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=35.49 E-value=67 Score=20.63 Aligned_cols=50 Identities=8% Similarity=-0.071 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 113 PLEIYNLVYSENIGTK-LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 113 p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+.+.|.-+....=+.. .+..+...|..+...|++++|...|+..+.....
T Consensus 21 A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 21 ASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp HHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4445554444322222 1233445577788899999999999999987644
No 161
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=34.47 E-value=1.1e+02 Score=24.75 Aligned_cols=49 Identities=6% Similarity=-0.063 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+++...|.-+.... ...+..|...|..+...|++++|...|+..+....
T Consensus 56 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 56 KKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45777777777644 45566777889999999999999999999988763
No 162
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=34.46 E-value=76 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.060 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 157 (172)
.+|.||..-|..+-..|+|++|.+-.+...
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 479999999999999999999966655543
No 163
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=34.11 E-value=1.1e+02 Score=25.93 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhc------C-CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHH
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGT------Q-PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQ 148 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~------~-~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~ 148 (172)
+..-+++++..+..... .++.-..+|...+.. . +++.+.|.-.... ....+..|...|..+...|++++
T Consensus 80 ~~~~~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 44556666666654332 233334444444432 2 4466777666553 45567788889999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q psy5551 149 ANHVFQLGLNAHAEP 163 (172)
Q Consensus 149 A~~I~~~Gi~~~A~P 163 (172)
|.+.|+++++....+
T Consensus 156 A~~~~~~al~~~p~~ 170 (474)
T 4abn_A 156 AHTCFSGALTHCKNK 170 (474)
T ss_dssp HHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhhCCCH
Confidence 999999999887553
No 164
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=33.76 E-value=76 Score=18.85 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 130 AMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 130 AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+..|...|..+...|++++|...|++++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 39 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 39 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445556666667777777777777777654
No 165
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=33.39 E-value=1.7e+02 Score=22.69 Aligned_cols=79 Identities=13% Similarity=-0.047 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcCC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
=+..+++++..+.+.. +...-..++...+... +++.+.|.-... .+--...+..|..-+..+...|+
T Consensus 134 A~~~~~~Al~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEE---RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 4677778877766532 1122345555555442 346666665554 22223456688888899999999
Q ss_pred HHHHHHHHHHHH
Q psy5551 146 IKQANHVFQLGL 157 (172)
Q Consensus 146 ~~~A~~I~~~Gi 157 (172)
+.+|...|++++
T Consensus 211 ~~~A~~~~~~al 222 (307)
T 2ifu_A 211 YVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999999999
No 166
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=32.98 E-value=47 Score=26.01 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q psy5551 114 LEIYNLVYSENIGTKLAMFYKAWAEVLDAH 143 (172)
Q Consensus 114 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 143 (172)
..+..||..+||...+|.|=.+|+...|+.
T Consensus 160 ~~l~~YLeeRGI~~~la~fl~~y~~~KE~~ 189 (203)
T 1yqf_A 160 NCVMTYLEKRGVDEKLGEFVVLYSFWAEQQ 189 (203)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999988875
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=32.54 E-value=63 Score=26.96 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 114 LEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 114 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
...|+-+...+-....+.+ --|..++..|++++|..++..||..+
T Consensus 86 ~~~l~~l~~~~~~~~~~~~--~la~i~~~~g~~eeAL~~l~~~i~~~ 130 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELY--LLATAQAILGDLDKSLETCVEGIDND 130 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCCCCcHHHH--HHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 3344444443333344433 34466666666666666666666544
No 168
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.48 E-value=40 Score=26.35 Aligned_cols=64 Identities=13% Similarity=0.016 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhhcCC--CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 97 PRYVSLVIKYIGTQP--NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 97 ~RyLkiWi~Ya~~~~--dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
...+..-+.++.... ++...|.-..... -..+..+...|..+...|++++|...|+..++....
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 444555555554432 3555565555443 344555667788888888888888888888886543
No 169
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=31.46 E-value=54 Score=21.25 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHND 145 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~ 145 (172)
.|-..||.||.+---|++.|..-++.-.+.|..|.
T Consensus 34 edypqifdflenvprgtktahirealrryieeige 68 (70)
T 2q2k_A 34 EDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp TTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC-
T ss_pred hhchHHHHHHHcCCCccchHHHHHHHHHHHHHhcc
Confidence 45668999999999999999999999988887763
No 170
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=31.45 E-value=1.5e+02 Score=21.49 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 131 MFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 131 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
.++...|..+...|++++|...|+++++....
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 34456788999999999999999999987644
No 171
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=31.15 E-value=1.3e+02 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
++.+.|...... ....+..|...|..+...|++++|.+.|+.+++..
T Consensus 55 ~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 55 EAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 355566555543 34556778888999999999999999999999854
No 172
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=30.89 E-value=50 Score=25.43 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAH 143 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 143 (172)
-..+..||..+||-..+|.|=.+|+...|+.
T Consensus 138 q~~l~~yLeeRGI~~~la~fl~~y~~~KEq~ 168 (182)
T 3jv1_A 138 VDSFTSYLSARGVNDTLANFIDQFSLWSEQA 168 (182)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999988875
No 173
>3e4h_A VARV peptide F; cyclotide, circular proteins, cystine knot, cyclization, plant protein, knottin, plant defense; 1.80A {Viola arvensis} SCOP: g.3.3.1 PDB: 2jwm_A 1nb1_A 1znu_A 2kuk_A 2jue_A* 1n1u_A 1orx_A
Probab=29.83 E-value=11 Score=21.31 Aligned_cols=8 Identities=75% Similarity=1.688 Sum_probs=6.0
Q ss_pred cccccccc
Q psy5551 4 SCSWPVYQ 11 (172)
Q Consensus 4 ~~~~pv~~ 11 (172)
||+|||=-
T Consensus 16 sC~~~vC~ 23 (29)
T 3e4h_A 16 SCSWPVCT 23 (29)
T ss_dssp EEETTEEE
T ss_pred EeCCCeee
Confidence 78998843
No 174
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=29.76 E-value=52 Score=25.78 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAH 143 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 143 (172)
-..+..||..+||-..+|.|=..|+...|+.
T Consensus 163 q~~l~~yLeeRGI~~~la~fl~~y~~~KE~~ 193 (209)
T 1p32_A 163 YDHLMDFLADRGVDNTFADELVELSTALEHQ 193 (209)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999888765
No 175
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=29.75 E-value=96 Score=23.93 Aligned_cols=84 Identities=11% Similarity=0.130 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhhcccccccchhHHHHHHH----HhhcCCC---HHHHHHHHHH----CCcchHHHHHHHHHHHHHHHcC
Q psy5551 76 IIPFLEETLVAFKNIEQYKQDPRYVSLVIK----YIGTQPN---PLEIYNLVYS----ENIGTKLAMFYKAWAEVLDAHN 144 (172)
Q Consensus 76 l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~----Ya~~~~d---p~~if~~L~~----~~IG~~~AlfYe~wA~~lE~~~ 144 (172)
-+..+++++..+.+... ...-...+.. |.+...+ +.+.|.--.. .+--...+..|...+.++...|
T Consensus 96 A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 45667777776654321 1122233333 3332233 4444443332 1212234677889999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy5551 145 DIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 145 ~~~~A~~I~~~Gi~~~A~ 162 (172)
++++|...|++.+.....
T Consensus 173 ~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp CHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999986543
No 176
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=29.17 E-value=1.2e+02 Score=25.88 Aligned_cols=46 Identities=4% Similarity=-0.030 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+.+.|...... ....+..|...|..+...|++++|.+.|+++++..
T Consensus 76 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 76 AAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444444432 22334455555566666666666666666665543
No 177
>1pt4_A Kalata B2; cyclotide, circular protein, cyclic cystine knot, CCK, antibiotic; NMR {Oldenlandia affinis} SCOP: g.3.3.1 PDB: 2kch_A 2f2i_A 2f2j_A
Probab=28.83 E-value=11 Score=21.20 Aligned_cols=7 Identities=57% Similarity=1.882 Sum_probs=5.7
Q ss_pred ccccccc
Q psy5551 4 SCSWPVY 10 (172)
Q Consensus 4 ~~~~pv~ 10 (172)
||+|||=
T Consensus 16 sC~~~vC 22 (29)
T 1pt4_A 16 SCTWPIC 22 (29)
T ss_dssp EEETTEE
T ss_pred ccCCCee
Confidence 7899984
No 178
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=28.45 E-value=80 Score=23.19 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++...|.-.... .-..+..|...+..+...|++++|.+.|+++++..
T Consensus 101 ~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 101 EQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 3456666655543 34556777888999999999999999999999877
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=28.13 E-value=1.3e+02 Score=19.90 Aligned_cols=63 Identities=14% Similarity=-0.073 Sum_probs=43.3
Q ss_pred chhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 96 DPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 96 D~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
||.....|...+... +++...|.-.... .-..+..+...|..+...|++++|...|+.+++..
T Consensus 47 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555566776666542 2356666665554 34455677788889999999999999999988754
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=28.01 E-value=87 Score=21.47 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 126 GTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 126 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
....+..|...|..+...|++.+|...++.+|....
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 345667888889999999999999999999998653
No 181
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=27.43 E-value=78 Score=27.30 Aligned_cols=31 Identities=3% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
.+|.-|-..|.++-.+|++++|...|++++.
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4677788999999999999999999999876
No 182
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.33 E-value=1.1e+02 Score=23.67 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=54.1
Q ss_pred ccchhHHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 94 KQDPRYVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 94 ~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
..||....+++.++... +++.+.|.-+....=+..-+.-+...+.+++..|+..+|...|++.+..
T Consensus 213 ~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 213 AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 34677778888888763 4588899988887777666778899999999999999999999998753
No 183
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=27.15 E-value=1.4e+02 Score=21.78 Aligned_cols=52 Identities=4% Similarity=-0.114 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHCCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 111 PNPLEIYNLVYSENIGTK-LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
+++...|.-+....-... .+.-+-.-|..+...|++++|...|+..++....
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 456777777766443332 2233444567788899999999999999886543
No 184
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.13 E-value=1.4e+02 Score=19.82 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHH
Q psy5551 135 AWAEVLDAHNDIKQANHVFQLGLNAHAEPIEDLE 168 (172)
Q Consensus 135 ~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~ 168 (172)
.-.+.|-..|++++|..-|-.+|.-..+|.+.|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456677789999999989999999999999885
No 185
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=27.02 E-value=15 Score=19.81 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=10.3
Q ss_pred cccccccCCCchhh
Q psy5551 8 PVYQIYSGMTVDLI 21 (172)
Q Consensus 8 pv~~~~sg~~~~~~ 21 (172)
+|+|++.||-.+-+
T Consensus 9 nvqplrqgrim~tl 22 (26)
T 4ggd_C 9 NVQPLRQGRIMSTL 22 (26)
T ss_pred ccchhhccchhhhh
Confidence 78999999865433
No 186
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.77 E-value=2.1e+02 Score=21.84 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
..+..|..-+..+...|++++|...|++++.-
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34678888999999999999999999999864
No 187
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=26.58 E-value=81 Score=25.30 Aligned_cols=37 Identities=14% Similarity=-0.036 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q psy5551 127 TKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEP 163 (172)
Q Consensus 127 ~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P 163 (172)
...+..|...+..+...|++++|...|++++......
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~ 180 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE 180 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc
Confidence 4567778888999999999999999999999876443
No 188
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.48 E-value=1.5e+02 Score=25.74 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy5551 110 QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIE 165 (172)
Q Consensus 110 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~ 165 (172)
.+++.++|..|...||--... -|-.-=..+.+.|+.++|.+||..=...+-.|-.
T Consensus 121 ~~~A~~l~~~M~~~g~~Pd~~-tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 121 PEMAFDMVKQMKAFGIQPRLR-SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHcCCCCccc-eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 356899999999998865543 4566666677889999999999998888888854
No 189
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=26.46 E-value=1.2e+02 Score=19.00 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++.+.|....... ...+..|...|..+...|++++|...|++++....
T Consensus 34 ~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 34 QAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp HHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3455555554432 23466777888999999999999999999998654
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=26.37 E-value=94 Score=23.34 Aligned_cols=34 Identities=9% Similarity=-0.078 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
-|..+..-+..+...|+|++|..-|+++|.-...
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 5677788899999999999999999999986544
No 191
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=25.13 E-value=1e+02 Score=24.80 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 126 GTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 126 G~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
....+..|-..|..+...|++++|...|++.+.
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455677888889999999999999999998875
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=24.70 E-value=1.2e+02 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy5551 134 KAWAEVLDAHNDIKQANHVFQLGLNA 159 (172)
Q Consensus 134 e~wA~~lE~~~~~~~A~~I~~~Gi~~ 159 (172)
-.-+..|...|++++|.+.|++++.-
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45688899999999999999999874
No 193
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=24.27 E-value=1.3e+02 Score=31.07 Aligned_cols=88 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcCCCHHHHHHHHHHCCcchHHHHHHHHHHHH
Q psy5551 60 VQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEV 139 (172)
Q Consensus 60 I~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~ 139 (172)
|.-+-..|-..|.-+.++++||+.+.. +.-..|.+-+..=|-.+-.-.|+..+-.|...-+ .-+ ..+-|..
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~----~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd--~~d---~~eIA~I 1058 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLD----NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD--NYD---APDIANI 1058 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcC----CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh--hcc---HHHHHHH
Q ss_pred HHHcCCHHHHHHHHHHH
Q psy5551 140 LDAHNDIKQANHVFQLG 156 (172)
Q Consensus 140 lE~~~~~~~A~~I~~~G 156 (172)
++..|.+++|.++|+++
T Consensus 1059 ai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKF 1075 (1630)
T ss_pred HHhCCCHHHHHHHHHHc
No 194
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.00 E-value=1.3e+02 Score=26.26 Aligned_cols=54 Identities=7% Similarity=-0.030 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchH
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAEPIE 165 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~ 165 (172)
+++.++|..|.+.||--... -|...-..+.+.|+.++|.++|++=...+-+|-.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~-ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEP-ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 46899999999999876554 5777888888999999999999988777777754
No 195
>1bh4_A Circulin A; cyclic peptide, cystine knot, anti-HIV activity; NMR {Chassalia parviflora} SCOP: g.3.3.3 PDB: 2eri_A 2kcg_A 2knm_A 2knn_A* 2kux_A 1vb8_A 1nbj_A
Probab=23.75 E-value=22 Score=20.10 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=6.1
Q ss_pred cccccccc
Q psy5551 3 YSCSWPVY 10 (172)
Q Consensus 3 ~~~~~pv~ 10 (172)
=||+|||=
T Consensus 17 CsC~~~vC 24 (30)
T 1bh4_A 17 CSCKNKVC 24 (30)
T ss_dssp SCCCSSCC
T ss_pred cccCCCee
Confidence 37999984
No 196
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=23.74 E-value=1.3e+02 Score=23.19 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 112 NPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 112 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
++.+.|...... ....+.+|...|..+...|++++|...|+++++...
T Consensus 22 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 69 (281)
T 2c2l_A 22 EAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69 (281)
T ss_dssp HHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 355555555443 223567788899999999999999999999998754
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=23.74 E-value=1.1e+02 Score=25.29 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 129 LAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 129 ~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
.+.-|...|..+...|++++|...|++++.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456688889999999999999999999997
No 198
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=23.47 E-value=2.8e+02 Score=22.00 Aligned_cols=62 Identities=16% Similarity=0.029 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcC------CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 99 YVSLVIKYIGTQ------PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 99 yLkiWi~Ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
...+|...+... +++.+.|.-.... ....+..|-..|..+...|++++|...|+++++....
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 345555555442 3456666666553 3445666777888899999999999999999986543
No 199
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=23.39 E-value=1.3e+02 Score=23.18 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHhhcccccccchhHHHHHHHHhhcCCC---HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 85 VAFKNIEQYKQDPRYVSLVIKYIGTQPN---PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 85 ~~f~~~e~Y~nD~RyLkiWi~Ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
+..-+.+.|.+=..-..+=+...+...| |..-|+ ...-+|..+...|+|.+|...|+..++
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~-------------~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQ-------------LLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHH-------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHH-------------HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444555666555555555555544333 444443 445689999999999999999999765
No 200
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=23.36 E-value=1.1e+02 Score=22.37 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q psy5551 131 MFYKAWAEVLDAHNDIKQANHVFQLGLNAHAE 162 (172)
Q Consensus 131 lfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~ 162 (172)
.....-|.++...|++.+|...|+..|.....
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 33345667777778888888888877776543
No 201
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=23.35 E-value=2e+02 Score=23.85 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAHA 161 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A 161 (172)
+.+.|.-.... --+.+..|-.-+..+...|++++|...|+++|....
T Consensus 151 Al~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 151 EMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 44444444432 233344444445555666666666666666665443
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=22.95 E-value=1e+02 Score=26.96 Aligned_cols=83 Identities=7% Similarity=-0.053 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHhhcccccccchhHHHHHHHHhhcC------CCHHHHHHHHHH---CCcch---HHHHHHHHHHHHHHH
Q psy5551 75 NIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ------PNPLEIYNLVYS---ENIGT---KLAMFYKAWAEVLDA 142 (172)
Q Consensus 75 ~l~~lLErc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~------~dp~~if~~L~~---~~IG~---~~AlfYe~wA~~lE~ 142 (172)
.-.+++++++...... --.+.|-.++..-..+... +++..+|.-... +--|. .+|.-|-..|.++-.
T Consensus 327 eA~~l~~~aL~~~~~~-lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 327 EVVKLCRECLEKQEPV-FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHHTTT-BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3466777777664332 2345555666555544331 235555544321 22232 468889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q psy5551 143 HNDIKQANHVFQLGLN 158 (172)
Q Consensus 143 ~~~~~~A~~I~~~Gi~ 158 (172)
+|++++|...|++++.
T Consensus 406 ~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 406 AGHIEVGHGMICKAYA 421 (490)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999875
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=22.78 E-value=2.1e+02 Score=23.77 Aligned_cols=95 Identities=11% Similarity=0.037 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhcccc---cccchh---HHHHHHHHhhc---CCCHHHHHHHHH
Q psy5551 51 DPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQ---YKQDPR---YVSLVIKYIGT---QPNPLEIYNLVY 121 (172)
Q Consensus 51 DPL~~w~~YI~W~~~~yp~~~~~s~l~~lLErc~~~f~~~e~---Y~nD~R---yLkiWi~Ya~~---~~dp~~if~~L~ 121 (172)
+-++....-+.=... . +-..+-.+.++.+..... --+|.- ...-|+..+.- ..++..+|+-|.
T Consensus 134 ~~lea~~l~vqi~L~----~----~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~ 205 (310)
T 3mv2_B 134 GTTELLLLAIEVALL----N----NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS 205 (310)
T ss_dssp THHHHHHHHHHHHHH----T----TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH----C----CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 556666665554432 1 224444444444433322 112332 33467777654 456899999986
Q ss_pred HCCcch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy5551 122 SENIGT-KLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157 (172)
Q Consensus 122 ~~~IG~-~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi 157 (172)
.+.-.. ...+.|- ..+..|++++|.++++.-+
T Consensus 206 ~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 206 QTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp TTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHH
Confidence 665431 3334444 6889999999999998544
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=22.13 E-value=2.7e+02 Score=22.16 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 111 PNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 111 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
+++.+.|...... ....+..|-..|..+...|++++|...|++++...
T Consensus 247 ~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 247 DEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3467777766653 34455667778888999999999999999998654
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=21.59 E-value=1.1e+02 Score=26.28 Aligned_cols=36 Identities=11% Similarity=-0.143 Sum_probs=29.1
Q ss_pred CCcchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 123 ENIGTK---LAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 123 ~~IG~~---~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
+-.|.. +|.-|..-|..+..+|+|++|...|++.+.
T Consensus 330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 444544 566678889999999999999999999875
No 206
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=21.38 E-value=1.2e+02 Score=25.52 Aligned_cols=33 Identities=15% Similarity=-0.087 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
..+..|...+..+...|+|++|...|+++|+..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~ 298 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 567788889999999999999999999999854
No 207
>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D
Probab=20.98 E-value=63 Score=23.81 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=23.2
Q ss_pred HHHHHhCCCCCC-------CCChHHHHHHHHHHhhccc
Q psy5551 61 QWLEQSYPCLGP-------ETNIIPFLEETLVAFKNIE 91 (172)
Q Consensus 61 ~W~~~~yp~~~~-------~s~l~~lLErc~~~f~~~e 91 (172)
+|+..-.|..++ ...+-.||++|+..|..++
T Consensus 82 KWlLnQIP~~~~~~~~~~d~e~le~LL~~~m~eiige~ 119 (121)
T 4gwp_D 82 KWLLNQIPVTEHSKVTRFDEKQIEELLDNCIETFVAEK 119 (121)
T ss_dssp HHHTCCCCCCSSTTSCCSSCSTHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCcccCCcccccCHHHHHHHHHHHHHHHhccc
Confidence 688888884331 2368999999999998765
No 208
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.97 E-value=2.5e+02 Score=23.24 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy5551 110 QPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGLNAH 160 (172)
Q Consensus 110 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~ 160 (172)
.+++...|.-.....=..-.|.++.. ..+...|++++|.+.|++.|...
T Consensus 182 ~~eAl~~~~kal~ldP~~~~a~~~lg--~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 182 PSQELEFIADILNQDAKNYHAWQHRQ--WVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCHHHHHHHH--HHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCccCHHHHHHHH--HHHHHcCChHHHHHHHHHHHHhC
Confidence 45566666666665544444444433 34555677777777777776654
No 209
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=20.83 E-value=31 Score=26.51 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=45.6
Q ss_pred HHHHHhhcccccccchhHHHHHHHHhhcCCCHHHHHHHHHHCCcchHHHHHHHHHHHHHH
Q psy5551 82 ETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLD 141 (172)
Q Consensus 82 rc~~~f~~~e~Y~nD~RyLkiWi~Ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE 141 (172)
.+++.+++.+.-+.|.=-.|.||..|=+..-=...++.|.++. .-+..||+.||.+..
T Consensus 88 ~~~~~v~~l~~i~T~~Gr~RawIR~aL~ek~L~~~l~~l~~~~--~~l~~~Y~~~All~~ 145 (180)
T 2dwk_A 88 EITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKK--ELLSEFYEVNALMME 145 (180)
T ss_dssp HHHHHHHTCTTCCSHHHHHHHHHHHHHHHTCHHHHHHHHHTCH--HHHTTTBCTTSGGGS
T ss_pred HHHHHHHHhhhcCCcchhHHHHHHHHHHHhHHHHHHHHHHhCh--HHHHhhCCCCccccC
Confidence 4555677778888888888999999977666777888888763 467889999998754
No 210
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=20.59 E-value=1.1e+02 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCcchHHHHHHHHHHHHHHHc
Q psy5551 113 PLEIYNLVYSENIGTKLAMFYKAWAEVLDAH 143 (172)
Q Consensus 113 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 143 (172)
-..+..||..+||-..+|.|=..|+...|+.
T Consensus 183 q~~l~~yLeeRGI~~~la~fl~~y~~~KEq~ 213 (227)
T 3qv0_A 183 QESLEAYLESRGVNEELASFISAYSEFKENN 213 (227)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999988765
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=20.03 E-value=1.3e+02 Score=25.59 Aligned_cols=31 Identities=10% Similarity=-0.001 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy5551 128 KLAMFYKAWAEVLDAHNDIKQANHVFQLGLN 158 (172)
Q Consensus 128 ~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~ 158 (172)
.+|.-|-..|.++-.+|++++|...|++.+.
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4677788999999999999999999999876
Done!