RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5551
(172 letters)
>gnl|CDD|214817 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 homology region 1.
Proteins containing this domain are checkpoint proteins
involved in cell division. This region has been shown to
be essential for the binding of the binding of BUB1 and
MAD3 to CDC20p.
Length = 124
Score = 128 bits (324), Expect = 7e-39
Identities = 49/120 (40%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 38 REFELQIRT-YDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQD 96
+ FE +++ Y+G DPL L Y++W E++YP G E+ ++ LE + F++ E+YK D
Sbjct: 5 QAFEAELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKND 64
Query: 97 PRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156
PRY+ + +KY P E++ +YS+ IGTKLA+FY+ WA++L+A K+A+ V+QLG
Sbjct: 65 PRYLKIWLKYAEYCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 124
>gnl|CDD|191994 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1. Proteins
containing this domain are checkpoint proteins involved
in cell division. This region has been shown to be
essential for the binding of the binding of BUB1 and
MAD3 to CDC20p.
Length = 124
Score = 119 bits (301), Expect = 2e-35
Identities = 49/121 (40%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 38 REFELQIRTY-DGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQD 96
+ FE +I+ Y +G DPL L Y++W E++YP G ++ ++ LE + F++ E+YK D
Sbjct: 4 QSFEEEIQNYEEGDDPLDLWLRYIKWTEEAYPQGGKQSGLLTLLERCVKYFEDDERYKND 63
Query: 97 PRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLG 156
RY+ + +KYI P +I+ +YS+ IGTKLA+FY+ WA +L++ K+A+ VFQLG
Sbjct: 64 VRYLKIWLKYIEYFSEPRDIFQYLYSKGIGTKLALFYEEWASLLESRGKFKKADEVFQLG 123
Query: 157 L 157
+
Sbjct: 124 I 124
>gnl|CDD|188707 cd08753, RGS_PDZRhoGEF, Regulator of G protein signaling (RGS)
domain found in the PDZ-Rho guanine nucleotide exchange
factor (RhoGEF) protein. The RGS domain is an essential
part of the PDZ-RhoGEF (PDZ:Postsynaptic density 95,
Disk large, Zona occludens-1; RhoGEF: Rho guanine
nucleotide exchange factor; alias PRG) protein, a member
of RhoGEFs subfamily of the RGS protein family. The
RhoGEFs are peripheral membrane proteins that regulate
essential cellular processes, including cell shape, cell
migration, and cell cycle progression, as well as gene
transcription by linking signals from heterotrimeric
G-alpha12/13 protein-coupled receptors to Rho GTPase
activation, leading to various cellular responses, such
as actin reorganization and gene expression. RhoGEFs
subfamily includes leukemia-associated RhoGEF protein
(LARG), p115RhoGEF, PDZ-RhoGEF and its rat specific
splice variant GTRAP48. The RGS domain of RhoGEFs has
very little sequence similarity with the canonical RGS
domain of the RGS proteins and is often refered to as RH
(RGS Homology) domain. In contrast to p115RhoGEF and
LARG, PDZ-RhoGEF cannot serve as a GTPase-activating
protein (GAP), due to the mutation of sites in the RGS
domain region that are crucial for GAP activity. RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. RGS
proteins regulate many aspects of embryonic development
such as glial differentiation, embryonic axis formation,
skeletal and muscle development, cell migration during
early embryogenesis, as well as apoptosis, cell
proliferation, and modulation of cardiac development.
Length = 145
Score = 30.2 bits (68), Expect = 0.29
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 70 LGPETNIIP--FLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQ--PNPLEIY 117
+GPE + P F E+ + F+++E+ K P ++ + ++YI +Q P PL Y
Sbjct: 3 IGPEEDYDPGYFNNESDIIFQDLEKLKSRPAHLVVFLRYIFSQADPGPLLFY 54
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 29.4 bits (66), Expect = 0.96
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 18/84 (21%)
Query: 81 EETLVAFKNIE-----QYK-QDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYK 134
E ++A N E Y QD +Y+ +V++Y+ P ++ NL+ + +I K A FY
Sbjct: 93 ERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYM---PGG-DLVNLMSNYDIPEKWARFYT 148
Query: 135 A-WAEVLDA-------HNDIKQAN 150
A LDA H D+K N
Sbjct: 149 AEVVLALDAIHSMGFIHRDVKPDN 172
>gnl|CDD|198350 cd07772, FGGY_NaCK_like, Novosphingobium aromaticivorans
carbohydrate kinase-like proteins; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of uncharacterized bacterial
proteins with similarity to carbohydrate kinase from
Novosphingobium aromaticivorans (NaCK). These proteins
may catalyze the transfer of a phosphate group from ATP
to their carbohydrate substrates. They belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 419
Score = 28.8 bits (65), Expect = 1.6
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 48 DGPDPLQLRFD--YVQWLEQSYPCLGPETNI---IPFLEETLV-AFKNIEQYKQDPRYVS 101
GP+ L + + E P L N + +L+ET AF P+Y +
Sbjct: 95 PGPEDLAAAYYAKRGFFAETGSPRLPGGLNAGRQLYWLKETKPDAFARARYILHYPQYWA 154
Query: 102 LV--------IKYIGTQP---NPLE--IYNLVYSENIGTKLAMFYKAW 136
+ +G NP +LV +E + F A
Sbjct: 155 WRLTGVAASEVTSLGCHTDLWNPRRGDFSSLVDAEGWAGLMPPFRPAG 202
>gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 406
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 137 AEVLDAHNDIKQANHVFQLGLNAHAEPIED 166
EV+D ++K+A+ QLGL A E ++D
Sbjct: 58 TEVMDP-KEVKKADRFIQLGLKAAREAMKD 86
>gnl|CDD|204145 pfam09128, RGS-like, Regulator of G protein signalling-like domain.
Members of this family adopt a structure consisting of
twelve helices that fold into a compact domain that
contains the overall structural scaffold observed in
other RGS proteins and three additional helical elements
that pack closely to it. Helices 1-9 comprise the RGS
(pfam00615) fold, in which helices 4-7 form a classic
antiparallel bundle adjacent to the other helices. Like
other RGS structures, helices 7 and 8 span the length of
the folded domain and form essentially one continuous
helix with a kink in the middle. Helices 10-12 form an
apparently stable C-terminal extension of the structural
domain, and although other RGS proteins lack this
structure, these elements are intimately associated with
the rest of the structural framework by hydrophobic
interactions. Members of the family bind to active
G-alpha proteins, promoting GTP hydrolysis by the alpha
subunit of heterotrimeric G proteins, thereby
inactivating the G protein and rapidly switching off G
protein-coupled receptor signalling pathways.
Length = 188
Score = 27.0 bits (60), Expect = 4.1
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 87 FKNIEQYKQDPRYVSLVIKYIGTQ--PNPLEIY 117
F+++EQ K P ++++ + ++ +Q P+PL Y
Sbjct: 5 FQSLEQLKSRPAHLAVFLHHVLSQFDPSPLLCY 37
>gnl|CDD|215277 PLN02501, PLN02501, digalactosyldiacylglycerol synthase.
Length = 794
Score = 27.3 bits (60), Expect = 4.7
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 82 ETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPL---EIYNLVYSENIGTKLAMFYKAWAE 138
E +F N YK +V+ V + + +P PL + YNL S T+ M Y +
Sbjct: 654 EFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNL--SWEAATQRFMEYSDLDK 711
Query: 139 VLDAHNDIKQA 149
VL+ +D K +
Sbjct: 712 VLNNGDDAKLS 722
>gnl|CDD|225942 COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport
and metabolism].
Length = 641
Score = 27.4 bits (61), Expect = 5.1
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 10/106 (9%)
Query: 11 QIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYPCL 70
+ Y G+ V N+ ++ + LS +FEL +G Y L
Sbjct: 27 RTYHGLLVPSTNLS--HGRYSRVLLSLSDFEL---RVNGYIYRLDTNSYRGGFWPDGIKL 81
Query: 71 GPETNIIPFLEETLVAFKNIEQ-----YKQDPRYVSLVIKYIGTQP 111
+ P +E + QD +V G P
Sbjct: 82 LNSIRVSPLGKEVFKEGGDFILGRSRFLFQDSGTERIVYSNEGDGP 127
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 26.9 bits (60), Expect = 6.6
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 20/54 (37%)
Query: 71 GPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYNLVYSEN 124
GP I+P L ++NI++ V+++I ++P PL +Y + E+
Sbjct: 344 GP---ILPILT-----YENIDE----------VLEFINSRPKPLALY--YFGED 377
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,873,318
Number of extensions: 801916
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 24
Length of query: 172
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 82
Effective length of database: 6,945,742
Effective search space: 569550844
Effective search space used: 569550844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)