RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5551
(172 letters)
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor
suppressor, TPR, apoptosis, cell division, cell cycle,
kinetochore, transferase; 1.80A {Homo sapiens} PDB:
3si5_A
Length = 164
Score = 150 bits (380), Expect = 3e-47
Identities = 50/134 (37%), Positives = 82/134 (61%)
Query: 38 REFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP 97
R FE +IR Y G DPL + Y+ W EQ+YP G E+N+ LE + A + ++Y DP
Sbjct: 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDP 63
Query: 98 RYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157
R+++L +K PL++Y+ ++++ IG LA FY +WAE +A + ++A+ +FQ G+
Sbjct: 64 RFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123
Query: 158 NAHAEPIEDLEAAQ 171
AEP+E L++
Sbjct: 124 QQKAEPLERLQSQH 137
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 140 bits (353), Expect = 3e-43
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 38 REFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLVAFKNIEQYKQDP 97
+ E +++Y G DPL Y+QW+E+++P + +I LE + F + ++Y DP
Sbjct: 11 QMLEAHMQSYKGNDPLGEWERYIQWVEENFP--ENKEYLITLLEHLMKEFLDKKKYHNDP 68
Query: 98 RYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQLGL 157
R++S +K+ + + + +Y+ IGT + Y AWA L+A +++ A+ V Q G+
Sbjct: 69 RFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128
Query: 158 NAHAEPIEDLEAAQ 171
AEP E L+
Sbjct: 129 QNQAEPREFLQQQY 142
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 134 bits (339), Expect = 3e-40
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 37 SREFELQIRTYDGP-DPLQLRFDYVQWLEQSYP-CLGPETNIIPFLEETLVAFKNIEQYK 94
E +I T + DPLQ+ DY++W ++P + ++ LE F YK
Sbjct: 55 RMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYK 114
Query: 95 QDPRYVSLVIKYIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQANHVFQ 154
D RY+ + ++Y+ P+E+++ + +IG + ++FY+ +A ++ ++A+ V+Q
Sbjct: 115 DDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174
Query: 155 LGLNAHAEPIEDLEAA 170
G A+P +
Sbjct: 175 KGKRMKAKPFLRFQQK 190
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 130 bits (327), Expect = 1e-38
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 39 EFELQIRTYDGPDPLQLRFDYVQWLEQSYPCLGPETN---IIPFLEETLVAFKNIEQYKQ 95
E L D DPL L DY+ W+ SY + E+ + +E L+ +++E Y+
Sbjct: 16 EQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRN 75
Query: 96 DPRYVSLVIKYI-----GTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQAN 150
DPR++ + I YI + ++++ IGTKL++FY+ ++++L+ +A
Sbjct: 76 DPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135
Query: 151 HVFQLGLNAHAEPIEDLEAA 170
+ +LG + P L +
Sbjct: 136 VLLELGAENNCRPYNRLLRS 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-08
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 43/178 (24%)
Query: 9 VYQIYSGMTVDLINIEILTYLFTAICLSSREFELQIRTYDGPDPLQLRFDYVQWLEQSYP 68
+YQ Y + DLI F+A LS EL T D + ++WLE P
Sbjct: 176 LYQTYHVLVGDLIK-------FSAETLS----ELIRTTLDAEKVFTQGLNILEWLEN--P 222
Query: 69 CLGPETNIIPFLEETLVAFKNIEQYKQDPRYVSLVIKYIGTQPNPLEIYN-----LVYSE 123
P+ +L ++ I Q YV + K +G P E+ + +S+
Sbjct: 223 SNTPDK---DYLLSIPISCPLIGVI-QLAHYV-VTAKLLGF--TPGELRSYLKGATGHSQ 275
Query: 124 NIGTKLAM--------FYKAWAEVLDAHNDIKQANHVFQLGLNAH-AEPIEDLEAAQM 172
+ T +A+ F+ + + + +F +G+ + A P L + +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITV---------LFFIGVRCYEAYPNTSLPPSIL 324
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 28.1 bits (62), Expect = 1.5
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 5/90 (5%)
Query: 88 KNIEQYKQDPRYVSLVIKYIGTQPNPLEI-----YNLVYSENIGTKLAMFYKAWAEVLDA 142
+++Y P YV I Y+ L K + +
Sbjct: 194 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253
Query: 143 HNDIKQANHVFQLGLNAHAEPIEDLEAAQM 172
D+ V + A E E E A +
Sbjct: 254 IGDLASILKVEKRRFTAFREEYEGKETALL 283
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.0 bits (59), Expect = 3.3
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 49 GPDPLQLRFDYVQWLEQSYPCLGPETNIIPFLEETLV-AFKNIEQYKQDPRYVSLVIKYI 107
G + ++ +Y ++++ + + P + +V + + ++ ++ LVI Y
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLI--RIVSGLELSDTKQKGKKF--LVIAY- 168
Query: 108 GTQPNPLEIYNLVYSENIGTKL 129
E + ENI +L
Sbjct: 169 -------EPF-----ENIAIEL 178
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 26.4 bits (59), Expect = 4.5
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 16/64 (25%)
Query: 39 EFELQIRTYDGPDPLQLRFDYV----------QWLEQSYPCLGPETNIIPFL-----EET 83
+ ++++ P +Q D V P L ++ +T
Sbjct: 70 DEQVKVSASSDPSAVQ-GADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADT 128
Query: 84 LVAF 87
L +
Sbjct: 129 LRSL 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 5.2
Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 57 FDYVQWLEQSYPCLGPETNIIPFLE-ETLVAF-KNIEQYKQD---------PRYVSLVIK 105
D++ ++ L + + + E K ++ QD PR +S++ +
Sbjct: 278 TDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 106 YIGTQPNPLEIYNLVYSENIGTKLAMFYKAWAEVLDAHNDIKQ 148
I + + V + + T + VL+ + ++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEP-AEYRK 373
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 26.0 bits (58), Expect = 7.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 72 PET-NIIPFLEE-TLVAFKNI------EQYKQDPRYV 100
T I PF + TL+ +I + Y +DPR +
Sbjct: 71 ASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSI 107
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 25.7 bits (57), Expect = 9.3
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 28/67 (41%)
Query: 119 LVYSENIGTKLAMFYKAWAEVLDAHN---DIK---QAN-------------HVFQLGLNA 159
LV N G A+F + + DIK AN H LGLN
Sbjct: 256 LVAGANFGRDYAVFEPG------SRHVGLDIKGQNVANPTAMILSSTLMLNH---LGLNE 306
Query: 160 HAEPIED 166
+A I
Sbjct: 307 YATRISK 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,652,625
Number of extensions: 146963
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 31
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)