RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5551
         (172 letters)



>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 190

 Score = 25.1 bits (55), Expect = 4.6
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 87  FKNIEQYKQDPRYVSLVIKYIGTQ--PNPLEIY 117
           F+++EQ K+ P ++  +++++  Q  P PL   
Sbjct: 3   FQSLEQVKRRPAHLMALLQHVALQFEPGPLLCC 35


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 25.2 bits (55), Expect = 5.9
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 145 DIKQANHVFQLGLNAHAEPI 164
            + +ANH   L L+ +A   
Sbjct: 638 GLGEANHAMSLTLDPYACGP 657


>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 307

 Score = 24.8 bits (53), Expect = 6.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 66  SYPCLGPETNIIPFLEETLVAFKNIEQY 93
            Y  L P   I+P  EET +  K I ++
Sbjct: 274 RYGFLLPARQILPTAEETWLGLKAIMEH 301


>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 304

 Score = 24.4 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 72  PETNIIPFLEETLVAFKNIEQY 93
           PE+ I    EET++A K +  Y
Sbjct: 278 PESQIQATCEETMLAIKYVTNY 299


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0467    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,773
Number of extensions: 29284
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)