Query psy5554
Match_columns 272
No_of_seqs 3 out of 5
Neff 1.2
Searched_HMMs 29240
Date Fri Aug 16 20:30:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3du1_X ALL3740 protein, HETL; 91.4 4.1 0.00014 31.6 18.1 16 230-245 237-252 (257)
2 2xt2_A ALBG, MCBG-like protein 75.9 5 0.00017 29.7 5.3 63 183-245 122-184 (200)
3 2o6w_A Repeat five residue (RF 72.4 27 0.00093 25.9 12.1 18 9-26 11-28 (150)
4 2bm5_A MFPA, RV3361C, pentapep 70.2 6.7 0.00023 29.4 4.8 41 203-243 127-167 (186)
5 3pss_A QNR; pentapeptide repea 32.2 1.5E+02 0.0052 21.9 7.5 172 6-177 15-192 (216)
6 2w7z_A EFSQNR, pentapeptide re 18.6 8.4 0.00029 29.4 -2.7 183 2-190 12-194 (214)
7 3nb2_A Secreted effector prote 18.3 5.9E+02 0.02 24.2 9.3 120 38-157 24-150 (613)
8 3pss_A QNR; pentapeptide repea 17.4 3.1E+02 0.011 20.1 8.8 188 60-247 9-202 (216)
9 3nb2_A Secreted effector prote 15.9 7.2E+02 0.024 23.7 10.0 128 18-145 24-158 (613)
10 2w7z_A EFSQNR, pentapeptide re 10.9 36 0.0012 25.9 -1.0 161 83-243 37-197 (214)
No 1
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=91.40 E-value=4.1 Score=31.63 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=7.5
Q ss_pred CccccccCCCceeeeC
Q psy5554 230 GLGLRNCNTGGLIVPK 245 (272)
Q Consensus 230 glglrncntgglivpk 245 (272)
|.-|.+.+--|.++|.
T Consensus 237 ga~l~~a~l~ga~~~~ 252 (257)
T 3du1_X 237 GAILKDAELKGAIMPD 252 (257)
T ss_dssp TCBCTTCBCTTCBCTT
T ss_pred CCEeCCCcccccCCCC
Confidence 3334444445555543
No 2
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=75.91 E-value=5 Score=29.72 Aligned_cols=63 Identities=6% Similarity=0.114 Sum_probs=31.5
Q ss_pred ccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCceeeeC
Q psy5554 183 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLIVPK 245 (272)
Q Consensus 183 lrncntgglglrncntgglglrncntgglglrncntgglglrncntgglglrncntgglivpk 245 (272)
+.+|+--+.-++.++--+.-+++|+--+.-+.+++--+.-++.+.--+.-++..+--|.++..
T Consensus 122 f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga~~~~ 184 (200)
T 2xt2_A 122 MVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSL 184 (200)
T ss_dssp EESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTCEECT
T ss_pred ecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCcEECH
Confidence 333443344444444444444444444444555555555555555555555655555555544
No 3
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=72.40 E-value=27 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=8.0
Q ss_pred ccCCcccccCCCCCCccc
Q psy5554 9 STKGLRNCNTGGLGLRNC 26 (272)
Q Consensus 9 stkgLR~C~T~G~~LR~C 26 (272)
+.+-++.|+-.+.-|+.+
T Consensus 11 ~~~~~~~~~l~~~dL~~~ 28 (150)
T 2o6w_A 11 LERECVGCNLEGVNLPRE 28 (150)
T ss_dssp TSSBCTTCBCTTCBCTTC
T ss_pred hcCCcCCcccCCCCCCCC
Confidence 444455554444444333
No 4
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=70.20 E-value=6.7 Score=29.45 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=16.6
Q ss_pred ccccCCCCccccccCCCCccccccCCCCccccccCCCceee
Q psy5554 203 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLIV 243 (272)
Q Consensus 203 lrncntgglglrncntgglglrncntgglglrncntggliv 243 (272)
+++|+--+.-++.++--+.-|+.++--+.-++..+--|.++
T Consensus 127 f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~ga~~ 167 (186)
T 2bm5_A 127 LRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARV 167 (186)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTTCBC
T ss_pred cCCCccCCCEecCCccCCcccCCCEeeccccccCeecccCc
Confidence 33333333333333333344444444444444444444444
No 5
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=32.22 E-value=1.5e+02 Score=21.85 Aligned_cols=172 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCCCCccccCCCCCCccccCC------CCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCC
Q psy5554 6 APISTKGLRNCNTGGLGLRNCNTGGLGLRNCNTG------GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG 79 (272)
Q Consensus 6 apistkgLR~C~T~G~~LR~C~T~G~~LR~C~T~------G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~ 79 (272)
+.++-.-++.|.-.+--+...+-.+.-++.|.-. +--++.++-...-+..|.-.+.-++.++-.+.-++.|.-.
T Consensus 15 ~~l~~~~f~~~~f~~~~f~~a~l~~~~f~~~~f~~~~~l~~~~f~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~ 94 (216)
T 3pss_A 15 QDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQAL 94 (216)
T ss_dssp GGGSSCEEESCEEESCBCTTCBCTTCEEESCBCCBTTTTBCCBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEEESCBCT
T ss_pred CcccCCEecCCEEeccccccCcccCCEEEEeEeccCCccCCcEeCCCCccCCCcCccCCCCCccCCCCcccCCcccCccc
Q ss_pred CCCcccccCCCCCcccccCCCCCCcccccCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCC
Q psy5554 80 GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG 159 (272)
Q Consensus 80 G~~LRpcttsgg~lRpCttsGg~LRpC~tsGg~LRpCtTsGgpLRpCtTsGgpLRpCtTsGgpLRpC~T~G~~LR~C~T~ 159 (272)
+.-++...-....++.+.-.+-.+..|+-.+-.++...-..--|+.+.-.+--|+...-.+--|+.+.-.+--|+.+.-.
T Consensus 95 ~a~f~~a~l~~~~~~~~~~~~a~~~~~~l~~a~~~~a~l~~~~l~~a~~~~a~l~~a~~~~a~l~~a~~~~a~l~~~~l~ 174 (216)
T 3pss_A 95 GINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQ 174 (216)
T ss_dssp TCBCTTCBCEEEEETTEEEECEEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSCCGGGSBCT
T ss_pred CCCcccCccccccccccceecCEEcccCcccCCCCcCEeCCCeecCCCccCCEecCCEeecccccCCCccCCeecCcccC
Q ss_pred CccccccCCCCccccccC
Q psy5554 160 GLGLRNCNTGGLGLRNCN 177 (272)
Q Consensus 160 Glglrncntgglglrncn 177 (272)
+--|+.++--+.-++..+
T Consensus 175 ~a~l~~a~l~~~~l~~~~ 192 (216)
T 3pss_A 175 GCDLRQCDLPGLDLRRVN 192 (216)
T ss_dssp TCBCTTCCCTTCCTTTSC
T ss_pred CCCccCCEecCcccccCc
No 6
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=18.56 E-value=8.4 Score=29.44 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCcccccccCCcccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCC
Q psy5554 2 PPIVAPISTKGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 81 (272)
Q Consensus 2 ppivapistkgLR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~ 81 (272)
|.|-.++...-... -.....+....-.+.-+..+.-.+.-|..|.-.+--++.|+-.+.-|+.+.-.+--|+.|+-.+-
T Consensus 12 P~l~~~l~~~~~~~-~~~~~~l~~~~~~~~~l~~~~l~~~~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~l~~~~f~~a 90 (214)
T 2w7z_A 12 PNLPEQLPLLTNCQ-LEDEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSG 90 (214)
T ss_dssp ----CCSCEESCCC-CCTTCEEESSEEEEEECCSCEEESCEEEEEEEEEEECTTCEEETCEEEEEEEESCBCTTCBCTTC
T ss_pred CCCCchhccccccc-ccccccccCCEEecceeecCcccCCEeccCEEEcCEEeCCccCCCEecCCEEEeeECcCCCccCC
Q ss_pred CcccccCCCCCcccccCCCCCCcccccCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCc
Q psy5554 82 GLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 161 (272)
Q Consensus 82 ~LRpcttsgg~lRpCttsGg~LRpC~tsGg~LRpCtTsGgpLRpCtTsGgpLRpCtTsGgpLRpC~T~G~~LR~C~T~Gl 161 (272)
-|+.+ .++.|.-.+-.++...-.+-.+..|.-.+--++...-.+--+..|.-.+--++.++-.+.-++.|+-.+.
T Consensus 91 ~l~~~-----~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a 165 (214)
T 2w7z_A 91 SFHRV-----TFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTES 165 (214)
T ss_dssp EEEEE-----EEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTC
T ss_pred EEEee-----EEeCCeeeCCCcCCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccC
Q ss_pred cccccCCCCccccccCCCCccccccCCCC
Q psy5554 162 GLRNCNTGGLGLRNCNTGGLGLRNCNTGG 190 (272)
Q Consensus 162 glrncntgglglrncntgglglrncntgg 190 (272)
-+.+.+--+.-++.++--+.-++..+--|
T Consensus 166 ~f~~a~l~~~~l~~a~l~~~~~~~a~l~g 194 (214)
T 2w7z_A 166 NWLNTSLXGLDFSQNTFERLTFSPNYLSG 194 (214)
T ss_dssp BCTTCCCTTCBCTTSBCSCCBCCGGGCTT
T ss_pred EecCCeeccCCcccCCcCceEcCHHHcCC
No 7
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=18.28 E-value=5.9e+02 Score=24.24 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCcccccCCCCCcccccCCCCCCcccccCCCC----C
Q psy5554 38 TGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG----L 113 (272)
Q Consensus 38 T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LRpcttsgg~lRpCttsGg~LRpC~tsGg~----L 113 (272)
.++..+..+.-.+.-|+.+.-.+.-|+.|+-.+--|+.|.-.+--|....-.+-.++.+.-.+-.|+..+-.+-. +
T Consensus 24 ~~g~~f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L 103 (613)
T 3nb2_A 24 TGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALF 103 (613)
T ss_dssp CSSCCTTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEC
T ss_pred ccCCCcCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCccccee
Q ss_pred ccccCCCCCCccccCCCCCCcc--ccCCCCCCccccC-CCCCCcccc
Q psy5554 114 RNCNTGGLGLRNCNTGGLGLRN--CNTGGLGLRNCNT-GGLGLRNCN 157 (272)
Q Consensus 114 RpCtTsGgpLRpCtTsGgpLRp--CtTsGgpLRpC~T-~G~~LR~C~ 157 (272)
+.|.-.+--|+.+.-.+--+.- |.-.+--|+.+.- .+.-|+.+.
T Consensus 104 ~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~ 150 (613)
T 3nb2_A 104 ENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAI 150 (613)
T ss_dssp TTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCB
T ss_pred ccCEecCCeecccEEeccEEecCccceeccccCCCeeCCCceecCCC
No 8
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=17.40 E-value=3.1e+02 Score=20.13 Aligned_cols=188 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCccccCCCCCCccccCCCCCcccccCCCCCcccccCC------CCCCcccccCCCCCccccCCCCCCccccCCCCCC
Q psy5554 60 GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG------GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 133 (272)
Q Consensus 60 G~~LR~C~T~G~~LR~C~T~G~~LRpcttsgg~lRpCtts------Gg~LRpC~tsGg~LRpCtTsGgpLRpCtTsGgpL 133 (272)
+.-++...-.+.-++.|.-.+--+...+-.+-.+..|.=. +-.++.+.-..-.+..|.-++--++.+.-.+--+
T Consensus 9 ~~d~~~~~l~~~~f~~~~f~~~~f~~a~l~~~~f~~~~f~~~~~l~~~~f~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f 88 (216)
T 3pss_A 9 GVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLEL 88 (216)
T ss_dssp SCBCCGGGGSSCEEESCEEESCBCTTCBCTTCEEESCBCCBTTTTBCCBCTTCBCTTCEEESCBCTTCBCTTCBCTTEEE
T ss_pred cceecCCcccCCEecCCEEeccccccCcccCCEEEEeEeccCCccCCcEeCCCCccCCCcCccCCCCCccCCCCcccCCc
Q ss_pred ccccCCCCCCccccCCCCCCccccCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCCccc
Q psy5554 134 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 213 (272)
Q Consensus 134 RpCtTsGgpLRpC~T~G~~LR~C~T~Glglrncntgglglrncntgglglrncntgglglrncntgglglrncntgglgl 213 (272)
+.|.-.+--++...-...-++.+.-.+--+.+|+--+.-+++.+--.--|+.++--+--|++.+--+.-|+.++--+.-+
T Consensus 89 ~~~~l~~a~f~~a~l~~~~~~~~~~~~a~~~~~~l~~a~~~~a~l~~~~l~~a~~~~a~l~~a~~~~a~l~~a~~~~a~l 168 (216)
T 3pss_A 89 RDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDW 168 (216)
T ss_dssp ESCBCTTCBCTTCBCEEEEETTEEEECEEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSCCG
T ss_pred ccCcccCCCcccCccccccccccceecCEEcccCcccCCCCcCEeCCCeecCCCccCCEecCCEeecccccCCCccCCee
Q ss_pred cccCCCCccccccCCCCccccccCCCceeeeCCc
Q psy5554 214 RNCNTGGLGLRNCNTGGLGLRNCNTGGLIVPKSK 247 (272)
Q Consensus 214 rncntgglglrncntgglglrncntgglivpksk 247 (272)
++.+--+.-|+.++--+.-++..+--|.++....
T Consensus 169 ~~~~l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q 202 (216)
T 3pss_A 169 ASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQ 202 (216)
T ss_dssp GGSBCTTCBCTTCCCTTCCTTTSCCTTCEEEGGG
T ss_pred cCcccCCCCccCCEecCcccccCcccCcEeCHHH
No 9
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=15.88 E-value=7.2e+02 Score=23.67 Aligned_cols=128 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCcccccCCCCC----c
Q psy5554 18 TGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG----L 93 (272)
Q Consensus 18 T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LR~C~T~G~~LRpcttsgg~----l 93 (272)
.++..+..+.-.+.-|+.+.-.+.-|+.|+-.+--|+.|.-.+--|..++-.+--++.+.-.+--|+..+-.+-. +
T Consensus 24 ~~g~~f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L 103 (613)
T 3nb2_A 24 TGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALF 103 (613)
T ss_dssp CSSCCTTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEC
T ss_pred ccCCCcCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCccccee
Q ss_pred ccccCCCCCCcccccCCCCCcc--ccCCCCCCccccC-CCCCCccccCCCCCCcc
Q psy5554 94 RNCNTGGLGLRNCNTGGLGLRN--CNTGGLGLRNCNT-GGLGLRNCNTGGLGLRN 145 (272)
Q Consensus 94 RpCttsGg~LRpC~tsGg~LRp--CtTsGgpLRpCtT-sGgpLRpCtTsGgpLRp 145 (272)
+.|.-.+-.|+.+.-.+-.+.- |.-.+--|+.+.- .+--|+.+.-.+.-+.+
T Consensus 104 ~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~il~ 158 (613)
T 3nb2_A 104 ENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVKELF 158 (613)
T ss_dssp TTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCSSSS
T ss_pred ccCEecCCeecccEEeccEEecCccceeccccCCCeeCCCceecCCCccCCeecC
No 10
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=10.87 E-value=36 Score=25.86 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred cccccCCCCCcccccCCCCCCcccccCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCCCCccccCCCcc
Q psy5554 83 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 162 (272)
Q Consensus 83 LRpcttsgg~lRpCttsGg~LRpC~tsGg~LRpCtTsGgpLRpCtTsGgpLRpCtTsGgpLRpC~T~G~~LR~C~T~Glg 162 (272)
++.++-++..++.-.-.+.-+..|.-.+-.|+...-.+--+..|.-++--++...-.+--++.|.-.+--++..+-.+.-
T Consensus 37 ~~~~~l~~~~l~~~~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~ 116 (214)
T 2w7z_A 37 YQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCL 116 (214)
T ss_dssp EEEEECCSCEEESCEEEEEEEEEEECTTCEEETCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEE
T ss_pred EecceeecCcccCCEeccCEEEcCEEeCCccCCCEecCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCCCEeeeeE
Q ss_pred ccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCCccccccCCCcee
Q psy5554 163 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLI 242 (272)
Q Consensus 163 lrncntgglglrncntgglglrncntgglglrncntgglglrncntgglglrncntgglglrncntgglglrncntggli 242 (272)
+.+|+--+.-++..+--+.-+.+|+--+.-+++++--+.-+++|+--+.-+.+.+--+.-++.++--+.-++..+--|.+
T Consensus 117 f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~~a~l~ga~ 196 (214)
T 2w7z_A 117 FEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLX 196 (214)
T ss_dssp EESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCCGGGCTTCE
T ss_pred EeCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCCcCceEcCHHHcCCcc
Q ss_pred e
Q psy5554 243 V 243 (272)
Q Consensus 243 v 243 (272)
+
T Consensus 197 ~ 197 (214)
T 2w7z_A 197 V 197 (214)
T ss_dssp E
T ss_pred c
Done!