Query psy5554
Match_columns 272
No_of_seqs 3 out of 5
Neff 1.2
Searched_HMMs 13730
Date Fri Aug 16 20:30:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5554.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5554hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o0wa2 d.50.1.1 (A:168-236) R 7.2 34 0.0025 20.9 -0.6 13 244-256 50-62 (69)
2 d1gyta2 c.56.5.3 (A:179-503) L 7.1 99 0.0072 25.4 2.2 17 255-271 63-79 (325)
3 d1wj4a_ d.15.1.2 (A:) Hypothet 4.7 1.7E+02 0.013 19.8 2.0 29 241-269 23-51 (124)
4 d2nuga2 d.50.1.1 (A:151-218) R 4.6 59 0.0043 19.9 -0.6 13 244-256 49-61 (68)
5 d2dixa1 d.50.1.1 (A:7-79) Inte 4.2 85 0.0062 19.4 -0.1 12 245-256 51-62 (73)
6 d1lama1 c.56.5.3 (A:160-484) L 4.0 2E+02 0.015 23.2 2.2 15 257-271 64-78 (325)
7 d2b7va1 d.50.1.1 (A:1-71) dsRN 3.6 81 0.0059 19.8 -0.6 12 245-256 49-60 (71)
8 d1di2a_ d.50.1.1 (A:) Double-s 3.6 81 0.0059 19.4 -0.6 12 245-256 50-61 (69)
9 d1kzqa1 b.6.2.1 (A:3-131) Majo 3.5 2.4E+02 0.017 18.7 1.9 30 241-270 93-128 (129)
10 d1rq8a_ d.68.4.1 (A:) Hypothet 3.5 2.1E+02 0.015 18.9 1.6 9 263-271 45-53 (96)
No 1
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.20 E-value=34 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=10.8
Q ss_pred eCCccchhhhccc
Q psy5554 244 PKSKRGAQENASR 256 (272)
Q Consensus 244 pkskrgaqenasr 256 (272)
-+||+.|+++|++
T Consensus 50 g~sKK~Aeq~AA~ 62 (69)
T d1o0wa2 50 GRTKKEAEKEAAR 62 (69)
T ss_dssp ESSHHHHHHHHHH
T ss_pred eCCHHHHHHHHHH
Confidence 4789999999875
No 2
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal domain {Escherichia coli, PepA [TaxId: 562]}
Probab=7.10 E-value=99 Score=25.40 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.4
Q ss_pred cccCCCceeEEEeeccC
Q psy5554 255 SRSENEPCLVKIKFTPN 271 (272)
Q Consensus 255 srsenepclvkikftpn 271 (272)
.-|+++|++|.|++.|+
T Consensus 63 ~GS~~~p~li~l~y~~~ 79 (325)
T d1gyta2 63 QGSQNESLMSVIEYKGN 79 (325)
T ss_dssp HTSSSCCEEEEEEEECC
T ss_pred eccCCCCCceEEEecCc
Confidence 44789999999999875
No 3
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.70 E-value=1.7e+02 Score=19.78 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=16.6
Q ss_pred eeeeCCccchhhhccccCCCceeEEEeec
Q psy5554 241 LIVPKSKRGAQENASRSENEPCLVKIKFT 269 (272)
Q Consensus 241 livpkskrgaqenasrsenepclvkikft 269 (272)
+-+|+.+..+++-...+...-|.|.|+|.
T Consensus 23 ~~~~~e~~~~~~~~~d~~~p~~~l~iRlP 51 (124)
T d1wj4a_ 23 LEMPPEKADGVVEGIDVNGPKAQLMLRYP 51 (124)
T ss_dssp CSCCCCCCCCCCCCCCCSSCEEEEEEECT
T ss_pred ccCCccccccccCCCCCCCCceEEEEECC
Confidence 34455555555544434444588888874
No 4
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=4.64 E-value=59 Score=19.85 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=10.3
Q ss_pred eCCccchhhhccc
Q psy5554 244 PKSKRGAQENASR 256 (272)
Q Consensus 244 pkskrgaqenasr 256 (272)
-+||+.|+.+|++
T Consensus 49 g~sKK~Aeq~AA~ 61 (68)
T d2nuga2 49 GKSKKEAEQRAAE 61 (68)
T ss_dssp ESSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 3688999988875
No 5
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.18 E-value=85 Score=19.38 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=9.6
Q ss_pred CCccchhhhccc
Q psy5554 245 KSKRGAQENASR 256 (272)
Q Consensus 245 kskrgaqenasr 256 (272)
+||+.|+++|.+
T Consensus 51 ~sKK~Aeq~AA~ 62 (73)
T d2dixa1 51 TSKKLAKHRAAE 62 (73)
T ss_dssp SCTTHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 688888888865
No 6
>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.96 E-value=2e+02 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=0.0
Q ss_pred cCCCceeEEEeeccC
Q psy5554 257 SENEPCLVKIKFTPN 271 (272)
Q Consensus 257 senepclvkikftpn 271 (272)
|+++|++|.+++.|+
T Consensus 64 S~~~p~li~l~y~~~ 78 (325)
T d1lama1 64 SEEPPVFLEIHYKGS 78 (325)
T ss_dssp SSSCCEEEEEEEECS
T ss_pred CCCCCcceEEeeccc
No 7
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.61 E-value=81 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCccchhhhccc
Q psy5554 245 KSKRGAQENASR 256 (272)
Q Consensus 245 kskrgaqenasr 256 (272)
+||+.|+.+|.+
T Consensus 49 ~SKK~Ak~~AA~ 60 (71)
T d2b7va1 49 RNKKLAKARAAQ 60 (71)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
No 8
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=3.60 E-value=81 Score=19.36 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCccchhhhccc
Q psy5554 245 KSKRGAQENASR 256 (272)
Q Consensus 245 kskrgaqenasr 256 (272)
+||+.|+.+|.+
T Consensus 50 ~sKK~Aeq~AA~ 61 (69)
T d1di2a_ 50 TSKQVAKRVAAE 61 (69)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
No 9
>d1kzqa1 b.6.2.1 (A:3-131) Major surface antigen p30, SAG1 {Toxoplasma gondii [TaxId: 5811]}
Probab=3.54 E-value=2.4e+02 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=0.0
Q ss_pred eeeeCCccchhhhc------cccCCCceeEEEeecc
Q psy5554 241 LIVPKSKRGAQENA------SRSENEPCLVKIKFTP 270 (272)
Q Consensus 241 livpkskrgaqena------srsenepclvkikftp 270 (272)
|-||++..-..+-. ..+..+.|.|+|...+
T Consensus 93 Ltip~~~lP~~dk~f~~gC~~~~~~~~C~V~VtV~a 128 (129)
T d1kzqa1 93 LTVPIEKFPVTTQTFVVGCIKGDDAQSCMVTVTVQA 128 (129)
T ss_dssp EECCGGGCCSSCEEEEEEEESSCGGGCEEEEEEECC
T ss_pred EEecCCCCCCCcEEEEEeeecCCCCCcCEEEEEEcc
No 10
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Probab=3.52 E-value=2.1e+02 Score=18.92 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=0.0
Q ss_pred eEEEeeccC
Q psy5554 263 LVKIKFTPN 271 (272)
Q Consensus 263 lvkikftpn 271 (272)
||||||..+
T Consensus 45 LIKvk~~~~ 53 (96)
T d1rq8a_ 45 LIKVHVLQN 53 (96)
T ss_dssp EEEEEECCC
T ss_pred eeEEEecCC
Done!