RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5554
         (272 letters)



>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function
           unknown].
          Length = 238

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 64/218 (29%), Positives = 69/218 (31%), Gaps = 14/218 (6%)

Query: 14  RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLR-NCNTGGLG 72
            N     L       G L   N N  GL L   N  G  L N N  G  L    +  G  
Sbjct: 27  ANLLGADLQGSELQLGDLNFENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGAD 86

Query: 73  LRNCNTGGLGLRNCNTGGLGLRN---CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG 129
           L   N  G  L   N  G  L N    N  G  L   N     L N N  G  L   N  
Sbjct: 87  LEGANLRGANLSGANLSGANLSNATRANLSGADLSGAN-----LSNANLTGANLSGANLN 141

Query: 130 GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG 189
           G  L N N  G  L   +     L   +  G  L   +  G  L   N  G  LRN N  
Sbjct: 142 GANLSNANLSGADLSGAD-----LSGADLSGANLSGADLRGANLSGANLSGADLRNANLS 196

Query: 190 GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 227
           G  L   +  G  L N N GG  L   N  G  L    
Sbjct: 197 GADLSGADLTGANLVNANLGGANLFGANLLGADLSGAT 234



 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 60/204 (29%), Positives = 66/204 (32%), Gaps = 14/204 (6%)

Query: 8   ISTKGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLR-NCNTGGLGLRNCNTGGLGLRNC 66
           +      N N  GL L   N  G  L N N  G  L    +  G  L   N  G  L   
Sbjct: 41  LGDLNFENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGA 100

Query: 67  NTGGLGLRN---CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 123
           N  G  L N    N  G  L   N     L N N  G  L   N  G  L N N  G  L
Sbjct: 101 NLSGANLSNATRANLSGADLSGAN-----LSNANLTGANLSGANLNGANLSNANLSGADL 155

Query: 124 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 183
              +     L   +  G  L   +  G  L   N  G  LRN N  G  L   +  G  L
Sbjct: 156 SGAD-----LSGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANL 210

Query: 184 RNCNTGGLGLRNCNTGGLGLRNCN 207
            N N GG  L   N  G  L    
Sbjct: 211 VNANLGGANLFGANLLGADLSGAT 234



 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 53/181 (29%), Positives = 57/181 (31%), Gaps = 14/181 (7%)

Query: 64  RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLR-NCNTGGLG 122
            N     L       G L   N N  GL L   N  G  L N N  G  L    +  G  
Sbjct: 27  ANLLGADLQGSELQLGDLNFENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGAD 86

Query: 123 LRNCNTGGLGLRNCNTGGLGLRN---CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG 179
           L   N  G  L   N  G  L N    N  G  L   N     L N N  G  L   N  
Sbjct: 87  LEGANLRGANLSGANLSGANLSNATRANLSGADLSGAN-----LSNANLTGANLSGANLN 141

Query: 180 GLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTG 239
           G  L N N  G  L   +     L   +  G  L   +  G  L   N  G  LRN N  
Sbjct: 142 GANLSNANLSGADLSGAD-----LSGADLSGANLSGADLRGANLSGANLSGADLRNANLS 196

Query: 240 G 240
           G
Sbjct: 197 G 197


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,368,269
Number of extensions: 1269208
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 61
Length of query: 272
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 177
Effective length of database: 6,723,972
Effective search space: 1190143044
Effective search space used: 1190143044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)